Psyllid ID: psy7115

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEITAR
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEEEEccccccEEEEccccccccccccEEEEcccccEEEEEEEEccccEEEEccccccccccEEEEEEcccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccEEEHHHccccccccEEEEEcccccEEEEEHHHHcccccccEEEEEcccEEEEEEEEEccccEEEEEEEcccccccccEEEEEccccEEEEEEEcc
Coil and Loop (DISEMBL)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNiyksvslsdmehkgesqmftypcrcgaefcieeqdtegdgsddniliACDTCSLLLEITARCGAEfcieeqdtkgdssegnilIACDTCSLLLEITAR
Flexible Loop (DISEMBL)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQdtkgdssegniliaCDTCSllleitar
Low Complexity Region (SEG)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEITAR
Disordered region (IsUnstruct)
****INEAWNIL**************************************QMFTYPCRCGAEFCIEEQD****GSDDNILIACDTCSLLLEITARCGAEFCIEEQ*******EGNILIACDTCSLLLEI***
Disordered Region (DISOPRED)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAE****************ILIACDTCSLLLEIT**
Disordered Region (DISEMBL)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEITAR
Disordered Region (DISPRO)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEITAR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEITAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q54CI5	170	DPH4 homolog OS=Dictyoste	yes	N/A	0.659	0.511	0.384	1e-09
Q0VBY7	148	DnaJ homolog subfamily C	yes	N/A	0.681	0.608	0.302	2e-07
Q91ZF0	196	DnaJ homolog subfamily C	yes	N/A	0.651	0.438	0.293	5e-06
Q6P3W2	148	DnaJ homolog subfamily C	yes	N/A	0.651	0.581	0.293	2e-05
Q74Z32	82	Diphthamide biosynthesis	yes	N/A	0.431	0.695	0.377	3e-05
Q6CMG4	82	Diphthamide biosynthesis	yes	N/A	0.431	0.695	0.377	4e-05
Q6FXS6	82	Diphthamide biosynthesis	yes	N/A	0.424	0.682	0.366	8e-05
Q9UUG3	139	Diphthamide biosynthesis	yes	N/A	0.613	0.582	0.296	8e-05
Q3E840	82	Diphthamide biosynthesis	yes	N/A	0.424	0.682	0.370	9e-05

>sp|Q54CI5|DPH4_DICDI DPH4 homolog OS=Dictyostelium discoideum GN=dph4 PE=3 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGA 61
           F  I  AW  LKD+  RK Y+S LL Q++   ++   + L DME   E+  + YPCRCG 
Sbjct: 79  FNDIQIAWETLKDDLLRKQYDSLLLEQKRQKYSVSDEIDLDDMEFIEENSEYVYPCRCGD 138

Query: 62  EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            + I E D   +GSD   ++ C  CSL +++
Sbjct: 139 HYIITE-DQLSEGSD---VVCCSGCSLSIKV 165

Stimulates the ATPase activity of several Hsp70-type chaperones.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0VBY7|DJC24_BOVIN DnaJ homolog subfamily C member 24 OS=Bos taurus GN=DNAJC24 PE=2 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 54/96 (56%), Gaps = 6/96 (6%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I++AW IL +E+ +K Y+ Q       +M  +   + L +M    +   F+  CRCG
Sbjct: 58  FIEIDQAWKILGNEETKKEYDLQRHEDDLRNMGPVDARIYLEEMSWNEDDHSFSLSCRCG 117

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARC 96
            ++ + +     D +++  LI+CDTCSL++E+   C
Sbjct: 118 GKYSVSK-----DEAEEVTLISCDTCSLIIELLHYC 148

Stimulates the ATPase activity of several Hsp70-type chaperones.

Bos taurus (taxid: 9913)

>sp|Q91ZF0|DJC24_MOUSE DnaJ homolog subfamily C member 24 OS=Mus musculus GN=Dnajc24 PE=1 SV=3

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I++AW IL +E+ +K Y+ Q    +  ++  +   V L +M      + F   CRCG
Sbjct: 106 FIEIDQAWKILGNEETKKKYDLQRHEDELRNVGPVDAQVRLEEMSWNQGDESFFLSCRCG 165

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            ++ + +     D + +  LI+CD CSL++E+
Sbjct: 166 GKYTVSK-----DEAQEATLISCDACSLIVEL 192

Stimulates the ATPase activity of several Hsp70-type chaperones.

Mus musculus (taxid: 10090)

>sp|Q6P3W2|DJC24_HUMAN DnaJ homolog subfamily C member 24 OS=Homo sapiens GN=DNAJC24 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 6/92 (6%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I++AW IL +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG
Sbjct: 58  FIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCG 117

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            ++ + +     D +++  LI+CDTCSL++E+
Sbjct: 118 GKYSVSK-----DEAEEVSLISCDTCSLIIEL 144

Stimulates the ATPase activity of several Hsp70-type chaperones.

Homo sapiens (taxid: 9606)

>sp|Q74Z32|DPH3_ASHGO Diphthamide biosynthesis protein 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPH3 PE=3 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          M++Y  V + DM    ++Q+FTYPC CG  F I   D   DG D   +  C +CSL++++
Sbjct: 1  MSVYDEVEIEDMTFDPDTQLFTYPCPCGDRFQISIDDM-CDGED---IAVCPSCSLMIKV 56

Query: 93 T 93
           
Sbjct: 57 V 57

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q6CMG4|DPH3_KLULA Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DPH3 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          M+ Y  V + DM    ++Q+FTYPC CG  F I   D   DG D   +  C +CSL++++
Sbjct: 1  MSTYDEVEIEDMTFDPDTQIFTYPCPCGDRFQISIDDMY-DGED---IAVCPSCSLMIQV 56

Query: 93 T 93
           
Sbjct: 57 V 57

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FXS6|DPH3_CANGA Diphthamide biosynthesis protein 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DPH3 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          M+ Y  + + DM    +SQMFTYPC CG  F    Q    D  D   +  C +CSL++++
Sbjct: 1  MSTYDQIEIEDMTFHPDSQMFTYPCPCGDRF----QILLDDMFDGEAIAVCPSCSLMIDV 56

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q9UUG3|DPH4_SCHPO Diphthamide biosynthesis protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph4 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 10/91 (10%)

Query: 4   KINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG--A 61
           ++ EA+ +L  EK+R+ Y+   + Q++   + Y  V LS+ E + ++  + YPCRCG   
Sbjct: 48  QVKEAYQVLSSEKDRQQYQ---IKQEEESSHYYSIVDLSEFE-ELDNGSYYYPCRCGDLG 103

Query: 62  EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            + + E D E + S    ++ C  CSL +++
Sbjct: 104 GYVVTEDDLENNRS----VVPCMGCSLTIQV 130

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q3E840|DPH3_YEAST Diphthamide biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KTI11 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 91
          M+ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 1  MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55

Query: 92 IT 93
          + 
Sbjct: 56 VV 57

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. Required for conferring sensitivity to K.lactis zymocin.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
330840953	157	hypothetical protein DICPUDRAFT_83095 [D	0.659	0.554	0.395	1e-09
330845463	141	hypothetical protein DICPUDRAFT_13347 [D	0.659	0.617	0.395	1e-09
157112326	157	hypothetical protein AaeL_AAEL000936 [Ae	0.681	0.573	0.305	2e-09
281211055	142	DNAJ heat shock N-terminal domain-contai	0.666	0.619	0.358	5e-09
89266909	99	zinc finger, CSL-type containing 3 [Xeno	0.651	0.868	0.347	7e-09
284447355	145	DnaJ (Hsp40) homolog, subfamily C, membe	0.651	0.593	0.347	8e-09
384251044	160	DnaJ-domain-containing protein [Coccomyx	0.674	0.556	0.354	1e-08
170066895	150	zinc finger [Culex quinquefasciatus] gi|	0.681	0.6	0.284	2e-08
260826488	166	hypothetical protein BRAFLDRAFT_90371 [B	0.712	0.566	0.317	7e-08
66801011	170	DNAJ heat shock N-terminal domain-contai	0.659	0.511	0.384	8e-08

>gi|330840953|ref|XP_003292471.1| hypothetical protein DICPUDRAFT_83095 [Dictyostelium purpureum] gi|325077278|gb|EGC31001.1| hypothetical protein DICPUDRAFT_83095 [Dictyostelium purpureum]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGA 61
           F +I ++W  LKD+  RK Y++ LL QQ+   ++   V L DME+  E   +TYPCRCG 
Sbjct: 65  FNEIQKSWETLKDDALRKQYDALLLEQQRQKYSVSDEVDLDDMEYLEEEGQYTYPCRCGD 124

Query: 62  EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           ++ I    TE   S+ N ++ C  CSL ++I
Sbjct: 125 QYII----TEDQLSEGNDVVCCSGCSLSIKI 151

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|330845463|ref|XP_003294604.1| hypothetical protein DICPUDRAFT_13347 [Dictyostelium purpureum] gi|325074900|gb|EGC28867.1| hypothetical protein DICPUDRAFT_13347 [Dictyostelium purpureum]

 Score = 68.2 bits (165), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGA 61
           F +I ++W  LKD+  RK Y++ LL QQ+   ++   V L DME+  E   +TYPCRCG 
Sbjct: 53  FNEIQKSWETLKDDALRKQYDALLLEQQRQKYSVSDEVDLDDMEYLEEEGQYTYPCRCGD 112

Query: 62  EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           ++ I    TE   S+ N ++ C  CSL ++I
Sbjct: 113 QYII----TEDQLSEGNDVVCCSGCSLSIKI 139

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|157112326|ref|XP_001657497.1| hypothetical protein AaeL_AAEL000936 [Aedes aegypti] gi|108883770|gb|EAT47995.1| AAEL000936-PA [Aedes aegypti]

 Score = 67.4 bits (163), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 60/95 (63%), Gaps = 5/95 (5%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I+EAW +L+DE+ R++Y+++L+ +  +    + + +  +D  H+ E   + + CRCG
Sbjct: 67  FIRIDEAWKVLRDEEARRVYDAELMQRTCREEYFVNEVLRRADFRHEQEEDYYYHTCRCG 126

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR 95
             + +     E  G+D++  IACD CSL++++ A+
Sbjct: 127 GLYVL----PENLGADESCYIACDECSLVVQVNAK 157

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281211055|gb|EFA85221.1| DNAJ heat shock N-terminal domain-containing protein [Polysphondylium pallidum PN500]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 1   MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG 60
           MF KI +AW  L+D + R  Y++ LL  Q+   +I   V L DME+  +   F+YPCRC 
Sbjct: 48  MFQKIQQAWECLRDPENRSKYDAYLLENQRQKYSISDEVDLDDMEYNEDLSQFSYPCRCN 107

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            ++ I+E   E  G +   + +C  CSL +++
Sbjct: 108 GQYTIDESQLEN-GEE---IASCQNCSLTIKV 135

Source: Polysphondylium pallidum PN500

Species: Polysphondylium pallidum

Genus: Polysphondylium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|89266909|emb|CAJ82223.1| zinc finger, CSL-type containing 3 [Xenopus (Silurana) tropicalis]

 Score = 65.5 bits (158), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 2  FLKINEAWNILKDEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCG 60
          F++IN+AW IL +E+ +K Y+ Q    + T M  +   V   D+    E+ ++++PCRCG
Sbjct: 12 FIEINQAWKILGNEEAKKAYDLQQREAELTKMWPVDNQVHWEDLSWDPETMVYSFPCRCG 71

Query: 61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            + + E D +     D  L+ CD+CSL++EI
Sbjct: 72 GSYAMTESDRK-----DVSLVNCDSCSLIIEI 98

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|284447355|ref|NP_001037943.2| DnaJ (Hsp40) homolog, subfamily C, member 24 [Xenopus (Silurana) tropicalis] gi|197246665|gb|AAI68456.1| dnajc24 protein [Xenopus (Silurana) tropicalis]

 Score = 65.1 bits (157), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 6/92 (6%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++IN+AW IL +E+ +K Y+ Q    + T M  +   V   D+    E+ ++++PCRCG
Sbjct: 58  FIEINQAWKILGNEEAKKAYDLQQREAELTKMWPVDNQVHWEDLSWDPETMVYSFPCRCG 117

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
             + + E D +     D  L+ CD+CSL++EI
Sbjct: 118 GSYAMTESDRK-----DVSLVNCDSCSLIIEI 144

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|384251044|gb|EIE24522.1| DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQM----FTYP 56
           FL++ +AW +LKD   R  Y   L++Q  Q  + +   V L DM       +    FTYP
Sbjct: 57  FLRVQQAWEVLKDTHRRAAYNQLLVAQALQKELAVSAEVDLDDMLCHDNPIVALCTFTYP 116

Query: 57  CRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           CRCG+ F + E D   D   D+ L+ C  CSL + +
Sbjct: 117 CRCGSSFTLSEADLSEDS--DSALVQCQNCSLAIRV 150

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|170066895|ref|XP_001868266.1| zinc finger [Culex quinquefasciatus] gi|167863074|gb|EDS26457.1| zinc finger [Culex quinquefasciatus]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 61/95 (64%), Gaps = 5/95 (5%)

Query: 2   FLKINEAWNILKDEKERKLYESQLL-SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I+EAW +L+D++ R++Y+++L+ S  +    + ++++ ++  H+ E   + + CRCG
Sbjct: 60  FIRIDEAWKVLRDDQARRVYDAELMQSTCREEYFVNETLTRAEFRHEEEEGYYYHTCRCG 119

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR 95
             + +     +G G D++  I CD CSL++++ A+
Sbjct: 120 GLYVL----PDGLGPDESCYIGCDECSLVVQVNAK 150

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260826488|ref|XP_002608197.1| hypothetical protein BRAFLDRAFT_90371 [Branchiostoma floridae] gi|229293548|gb|EEN64207.1| hypothetical protein BRAFLDRAFT_90371 [Branchiostoma floridae]

 Score = 62.0 bits (149), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 10/104 (9%)

Query: 1   MFLKINEAWNILKDEKERKLYESQL----LSQQQTHMNIYKSVSLSDMEHKGESQMFTYP 56
           MF+ +++AW  L D   RK Y+++L    +SQ+     + + ++L+DM++     +++YP
Sbjct: 58  MFVAVDKAWKTLGDPTLRKEYDARLNEKTISQE---FPVDEEITLADMDYDEGEGVYSYP 114

Query: 57  CRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEF 100
           CRCG ++ + E + E DG D  ++I C TCSL + +     A+ 
Sbjct: 115 CRCGDDYSVCEDEVE-DGRD--VVICCSTCSLTVRVQGVSSADV 155

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66801011|ref|XP_629431.1| DNAJ heat shock N-terminal domain-containing protein [Dictyostelium discoideum AX4] gi|74996463|sp|Q54CI5.1|DPH4_DICDI RecName: Full=DPH4 homolog; AltName: Full=DnaJ homolog subfamily C member 24 gi|60462839|gb|EAL61039.1| DNAJ heat shock N-terminal domain-containing protein [Dictyostelium discoideum AX4]

 Score = 62.0 bits (149), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 4/91 (4%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGA 61
           F  I  AW  LKD+  RK Y+S LL Q++   ++   + L DME   E+  + YPCRCG 
Sbjct: 79  FNDIQIAWETLKDDLLRKQYDSLLLEQKRQKYSVSDEIDLDDMEFIEENSEYVYPCRCGD 138

Query: 62  EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            + I E D   +GSD   ++ C  CSL +++
Sbjct: 139 HYIITE-DQLSEGSD---VVCCSGCSLSIKV 165

Source: Dictyostelium discoideum AX4

Species: Dictyostelium discoideum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
DICTYBASE|DDB_G0292980	170	dph4 "diphthamide biosynthesis	0.659	0.511	0.384	1.9e-12
ZFIN|ZDB-GENE-040426-1153	149	dnajc24 "DnaJ (Hsp40) homolog,	0.659	0.583	0.326	1.3e-11
UNIPROTKB|Q0VBY7	148	DNAJC24 "DnaJ homolog subfamil	0.681	0.608	0.302	3.2e-10
MGI|MGI:1919522	196	Dnajc24 "DnaJ (Hsp40) homolog,	0.651	0.438	0.293	9.7e-09
UNIPROTKB|Q6P3W2	148	DNAJC24 "DnaJ homolog subfamil	0.651	0.581	0.293	1.2e-08
POMBASE|SPAC926.05c	139	dph4 "diphthamide biosynthesis	0.613	0.582	0.296	6.8e-08
TAIR|locus:2124685	174	AT4G10130 [Arabidopsis thalian	0.507	0.385	0.342	6.1e-07
UNIPROTKB|Q1LZC9	82	DPH3 "DPH3 homolog" [Bos tauru	0.401	0.646	0.333	1e-06
UNIPROTKB|E2R4V8	82	DPH3 "Uncharacterized protein"	0.401	0.646	0.333	1e-06
SGD|S000007587	82	KTI11 "Zn-ribbon protein requi	0.416	0.670	0.377	1e-06

DICTYBASE|DDB_G0292980 dph4 "diphthamide biosynthesis protein 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/91 (38%), Positives = 51/91 (56%)

Query:     2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGA 61
             F  I  AW  LKD+  RK Y+S LL Q++   ++   + L DME   E+  + YPCRCG 
Sbjct:    79 FNDIQIAWETLKDDLLRKQYDSLLLEQKRQKYSVSDEIDLDDMEFIEENSEYVYPCRCGD 138

Query:    62 EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
              + I E D   +GSD   ++ C  CSL +++
Sbjct:   139 HYIITE-DQLSEGSD---VVCCSGCSLSIKV 165

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1153 dnajc24 "DnaJ (Hsp40) homolog, subfamily C, member 24" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 30/92 (32%), Positives = 55/92 (59%)

Query:     2 FLKINEAWNILKDEKERKLYESQLLS-QQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG 60
             F+ I++AW IL +E+ R  Y  QL + + +    +   ++L DM    E++ ++Y CRCG
Sbjct:    58 FIDIDQAWKILSNEESRNEYNLQLRACELKQSWPVDAHITLDDMNWDYETECYSYTCRCG 117

Query:    61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
              EF +E+ +T+    +   ++ CD+CSL +E+
Sbjct:   118 GEFILEKDETQ----EVETVVCCDSCSLSIEV 145

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0VBY7 DNAJC24 "DnaJ homolog subfamily C member 24" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 29/96 (30%), Positives = 53/96 (55%)

Query:     2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
             F++I++AW IL +E+ +K Y+ Q       +M  +   + L +M    +   F+  CRCG
Sbjct:    58 FIEIDQAWKILGNEETKKEYDLQRHEDDLRNMGPVDARIYLEEMSWNEDDHSFSLSCRCG 117

Query:    61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARC 96
              ++ + + + E     +  LI+CDTCSL++E+   C
Sbjct:   118 GKYSVSKDEAE-----EVTLISCDTCSLIIELLHYC 148

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1919522 Dnajc24 "DnaJ (Hsp40) homolog, subfamily C, member 24" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/92 (29%), Positives = 51/92 (55%)

Query:     2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
             F++I++AW IL +E+ +K Y+ Q    +  ++  +   V L +M      + F   CRCG
Sbjct:   106 FIEIDQAWKILGNEETKKKYDLQRHEDELRNVGPVDAQVRLEEMSWNQGDESFFLSCRCG 165

Query:    61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
              ++ + +     D + +  LI+CD CSL++E+
Sbjct:   166 GKYTVSK-----DEAQEATLISCDACSLIVEL 192

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q6P3W2 DNAJC24 "DnaJ homolog subfamily C member 24" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 27/92 (29%), Positives = 50/92 (54%)

Query:     2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
             F++I++AW IL +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG
Sbjct:    58 FIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCG 117

Query:    61 AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
              ++ + + + E     +  LI+CDTCSL++E+
Sbjct:   118 GKYSVSKDEAE-----EVSLISCDTCSLIIEL 144

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPAC926.05c dph4 "diphthamide biosynthesis protein Dph4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query:     4 KINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG--A 61
             ++ EA+ +L  EK+R+ Y+   + Q++   + Y  V LS+ E       + YPCRCG   
Sbjct:    48 QVKEAYQVLSSEKDRQQYQ---IKQEEESSHYYSIVDLSEFEELDNGSYY-YPCRCGDLG 103

Query:    62 EFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
              + + E D E + S    ++ C  CSL +++
Sbjct:   104 GYVVTEDDLENNRS----VVPCMGCSLTIQV 130

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2124685 AT4G10130 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 24/70 (34%), Positives = 38/70 (54%)

Query:     2 FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDM--EHKGESQMFTYPCRC 59
             FLKI +AW +L D + R +Y++ L S +   +     +S+ DM  E  G+     Y CRC
Sbjct:    56 FLKIQKAWEVLSDAELRVVYDNDLRSSRHDGITA-DEISIEDMSVEITGDVIDLFYQCRC 114

Query:    60 GAEFCIEEQD 69
             G  FC++  +
Sbjct:   115 GDYFCVDSSE 124

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

UNIPROTKB|Q1LZC9 DPH3 "DPH3 homolog" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query:    36 YKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
             +  V + D ++  +S+ + YPC CG  FCI ++D E +G D   +  C +CSL++++
Sbjct:     5 HDEVEIEDFQYDEDSETYFYPCPCGDNFCITKEDLE-NGED---VATCPSCSLIIKV 57

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051099 "positive regulation of binding" evidence=IEA

GO:0050709 "negative regulation of protein secretion" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2R4V8 DPH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query:    36 YKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
             +  V + D ++  +S+ + YPC CG  FCI ++D E +G D   +  C +CSL++++
Sbjct:     5 HDEVEIEDFQYDEDSETYFYPCPCGDNFCITKEDLE-NGED---VATCPSCSLIIKV 57

GO:0051099 "positive regulation of binding" evidence=IEA

GO:0050709 "negative regulation of protein secretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

SGD|S000007587 KTI11 "Zn-ribbon protein required for synthesis of diphthamide on eEF2" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/61 (37%), Positives = 35/61 (57%)

Query:    33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 91
             M+ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct:     1 MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55

Query:    92 I 92
             +
Sbjct:    56 V 56

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0009055 "electron carrier activity" evidence=IDA

GO:0005506 "iron ion binding" evidence=IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0002098 "tRNA wobble uridine modification" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VBY7	DJC24_BOVIN	No assigned EC number	0.3020	0.6818	0.6081	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam05207	55	pfam05207, zf-CSL, CSL zinc finger	6e-10
COG5216	67	COG5216, COG5216, Uncharacterized conserved protei	2e-05
pfam00226	63	pfam00226, DnaJ, DnaJ domain	0.002

>gnl|CDD|191232 pfam05207, zf-CSL, CSL zinc finger

 Score = 51.1 bits (123), Expect = 6e-10
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 39 VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          V L D E   E   F YPCRCG EF I E+D E    +  +++ C +CSL +++
Sbjct: 3  VELEDFEFDEEEGSFYYPCRCGDEFEITEEDLE----EGEVVVQCPSCSLWIKV 52

This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine. Length = 55

>gnl|CDD|227541 COG5216, COG5216, Uncharacterized conserved protein [Function unknown]

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          M+ Y  + + D     E + FTYPC CG  F I  +D      +  ++  C +CSL++ +
Sbjct: 1  MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLR----NGEVVARCPSCSLIVCV 56

Length = 67

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 34.4 bits (80), Expect = 0.002
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 1  MFLKINEAWNILKDEKERKLY 21
           F +INEA+ +L D ++R +Y
Sbjct: 42 KFKEINEAYEVLSDPEKRAIY 62

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	99.84
KOG2923|consensus	67		99.81
COG5216	67	Uncharacterized conserved protein [Function unknow	99.66
KOG0712|consensus	337		98.92
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	98.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	98.56
PRK14298	377	chaperone protein DnaJ; Provisional	98.52
KOG0715|consensus	288		98.4
KOG0713|consensus	336		98.27
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.27
PRK14296	372	chaperone protein DnaJ; Provisional	98.09
PRK14288	369	chaperone protein DnaJ; Provisional	98.06
PRK14279	392	chaperone protein DnaJ; Provisional	97.99
KOG0718|consensus	546		97.95
PRK14286	372	chaperone protein DnaJ; Provisional	97.91
PRK14287	371	chaperone protein DnaJ; Provisional	97.9
PRK14282	369	chaperone protein DnaJ; Provisional	97.85
PRK14291	382	chaperone protein DnaJ; Provisional	97.84
PRK14276	380	chaperone protein DnaJ; Provisional	97.83
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	97.83
PRK14283	378	chaperone protein DnaJ; Provisional	97.82
PRK14277	386	chaperone protein DnaJ; Provisional	97.8
PRK14280	376	chaperone protein DnaJ; Provisional	97.78
PRK14299	291	chaperone protein DnaJ; Provisional	97.77
PRK14285	365	chaperone protein DnaJ; Provisional	97.76
PRK14297	380	chaperone protein DnaJ; Provisional	97.71
PRK14301	373	chaperone protein DnaJ; Provisional	97.7
PRK14284	391	chaperone protein DnaJ; Provisional	97.69
PRK14278	378	chaperone protein DnaJ; Provisional	97.68
PRK14294	366	chaperone protein DnaJ; Provisional	97.67
PRK14295	389	chaperone protein DnaJ; Provisional	97.63
PRK14281	397	chaperone protein DnaJ; Provisional	97.62
KOG0691|consensus	296		97.62
KOG0716|consensus	279		97.54
PRK10767	371	chaperone protein DnaJ; Provisional	97.54
PRK10266	306	curved DNA-binding protein CbpA; Provisional	97.52
PRK14290	365	chaperone protein DnaJ; Provisional	97.49
PRK14289	386	chaperone protein DnaJ; Provisional	97.49
PRK14292	371	chaperone protein DnaJ; Provisional	97.48
PRK14293	374	chaperone protein DnaJ; Provisional	97.45
PRK14300	372	chaperone protein DnaJ; Provisional	97.45
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	97.28
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	97.27
KOG0717|consensus	508		97.24
PRK01356	166	hscB co-chaperone HscB; Provisional	97.15
PRK05014	171	hscB co-chaperone HscB; Provisional	97.11
PRK00294	173	hscB co-chaperone HscB; Provisional	97.06
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	97.04
KOG0719|consensus	264		96.94
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	96.83
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	96.67
PRK03578	176	hscB co-chaperone HscB; Provisional	96.65
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	96.24
KOG0720|consensus	490		96.07
KOG0714|consensus	306		95.91
PHA03102	153	Small T antigen; Reviewed	95.85
PRK01773	173	hscB co-chaperone HscB; Provisional	95.78
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.62
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	93.23
KOG0550|consensus	486		92.99
KOG0624|consensus	504		92.92
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	91.73
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	91.45
KOG3192|consensus	168		90.38
PF05180	66	zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc	90.1
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	88.32
KOG0722|consensus	329		87.13
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	86.93
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	85.39
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	83.92
PHA02624	647	large T antigen; Provisional	83.68
KOG0721|consensus	230		82.56
PF07709	14	SRR: Seven Residue Repeat; InterPro: IPR011714 Thi	81.82
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	81.67

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.84  E-value=2.6e-21  Score=123.91  Aligned_cols=55  Identities=44%  Similarity=0.947  Sum_probs=48.5

Q ss_pred             ccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEec
Q psy7115          37 KSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR   95 (132)
Q Consensus        37 d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~   95 (132)
                      |+|+|+||.++++.+.|+|+||||+.|.|++++|+++    ..+|+|++|||||+|+|+
T Consensus         1 dev~l~d~~~~~~~~~~~y~CRCG~~f~i~e~~l~~~----~~iv~C~sCSL~I~V~~~   55 (55)
T PF05207_consen    1 DEVSLDDMEFDEEEGVYSYPCRCGGEFEISEEDLEEG----EVIVQCDSCSLWIRVNYD   55 (55)
T ss_dssp             -EEETTTSEEETTTTEEEEEETTSSEEEEEHHHHHCT------EEEETTTTEEEEEE--
T ss_pred             CeEEhhhceecCCCCEEEEcCCCCCEEEEcchhccCc----CEEEECCCCccEEEEEeC
Confidence            5789999999998889999999999999999999998    899999999999999984

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>KOG2923|consensus

Probab=99.81  E-value=1.3e-20  Score=123.54  Aligned_cols=61  Identities=31%  Similarity=0.683  Sum_probs=57.0

Q ss_pred             cccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCCc
Q psy7115          34 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGA   98 (132)
Q Consensus        34 ~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e   98 (132)
                      .++++|.|+||+|+++++.|+|||+||+.|+|++++|++|    ..+++|++|||.|+|+|+..+
T Consensus         2 ~~ydeVeiedfe~~~e~~~y~yPCpCGDrf~It~edL~~g----e~Va~CpsCSL~I~ViYd~ed   62 (67)
T KOG2923|consen    2 SFYDEVEIEDFEFDEENQTYYYPCPCGDRFQITLEDLENG----EDVARCPSCSLIIRVIYDKED   62 (67)
T ss_pred             cccceEEeecceeccCCCeEEcCCCCCCeeeecHHHHhCC----CeeecCCCceEEEEEEeCHHH
Confidence            4679999999999999999999999999999999999999    899999999999999997554

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=8.3e-17  Score=104.57  Aligned_cols=60  Identities=28%  Similarity=0.711  Sum_probs=56.1

Q ss_pred             cccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCC
Q psy7115          34 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCG   97 (132)
Q Consensus        34 ~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~   97 (132)
                      .++++|.++||.|..++..|+|||.||+.|+|++++|.+|    ..+..||+|||-|.|+|+.+
T Consensus         2 sfYDEieiedftf~~e~~~ftyPCPCGDRFeIsLeDl~~G----E~VArCPSCSLiv~vvyd~e   61 (67)
T COG5216           2 SFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNG----EVVARCPSCSLIVCVVYDAE   61 (67)
T ss_pred             CccceeEeeeeEEcCCCceEEecCCCCCEeEEEHHHhhCC----ceEEEcCCceEEEEEEecHH
Confidence            4789999999999998899999999999999999999999    89999999999999999643

>KOG0712|consensus

Probab=98.92  E-value=9.3e-10  Score=92.50  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=28.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhhhc
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQTH   32 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~~~   32 (132)
                      ||++|.+||+|||||+||+.||+++.+..+.+
T Consensus        43 kfkei~~AyevLsd~ekr~~yD~~g~~~~~~g   74 (337)
T KOG0712|consen   43 KFKEISQAYEVLSDPEKREIYDQYGEEGLQGG   74 (337)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence            79999999999999999999999998776443

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=1.2e-09  Score=92.86  Aligned_cols=30  Identities=30%  Similarity=0.459  Sum_probs=27.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQ   30 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~   30 (132)
                      ||++|++||||||||+||++||+.+.....
T Consensus        46 KFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484          46 KFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             HHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            699999999999999999999998887654

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=98.56  E-value=3.4e-08  Score=85.07  Aligned_cols=88  Identities=17%  Similarity=0.179  Sum_probs=49.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhhhcccccccccccCcEEcCccceEeeeccCCCe---EEEeeccccCCCCCC
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAE---FCIEEQDTEGDGSDD   77 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~~~~~~~d~v~LdDm~~~e~~~~~~~~CRCGg~---f~It~edL~~G~~~~   77 (132)
                      +|++|++||+|||||+||+.||..+......+....+..++.+..|+.+. .-..+-|-.+.   +.|++++++.|....
T Consensus        66 ~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d~~d~f~~~Fggg~-~~~~~~rg~di~~~l~vtLee~~~G~~~~  144 (421)
T PTZ00037         66 KFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADASDLFDLIFGGGR-KPGGKKRGEDIVSHLKVTLEQIYNGAMRK  144 (421)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcchhhhHHHhhcccc-ccccccCCCCEEEEeeeeHHHHhCCCceE
Confidence            59999999999999999999999776432111111122233333343211 00112232232   778899999886421


Q ss_pred             ---ceEEECCCCCce
Q psy7115          78 ---NILIACDTCSLL   89 (132)
Q Consensus        78 ---~~vv~C~sCSL~   89 (132)
                         ...+.|+.|+..
T Consensus       145 i~~~r~~~C~~C~G~  159 (421)
T PTZ00037        145 LAINKDVICANCEGH  159 (421)
T ss_pred             EEeeccccccccCCC
Confidence               123455555443

>PRK14298 chaperone protein DnaJ; Provisional

Probab=98.52  E-value=4.8e-08  Score=82.84  Aligned_cols=27  Identities=30%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+.+..
T Consensus        46 ~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298         46 KFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             HHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            599999999999999999999997653

>KOG0715|consensus

Probab=98.40  E-value=2.1e-07  Score=76.73  Aligned_cols=28  Identities=43%  Similarity=0.633  Sum_probs=26.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|.+|||||+|+++|++||..+..+
T Consensus        84 kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   84 KFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            6999999999999999999999999875

>KOG0713|consensus

Probab=98.27  E-value=4.2e-07  Score=76.40  Aligned_cols=30  Identities=30%  Similarity=0.466  Sum_probs=27.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQ   30 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~   30 (132)
                      +|++|+.||||||||++|+.||..++....
T Consensus        58 ~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   58 KFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            599999999999999999999999986644

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.27  E-value=7.6e-07  Score=74.53  Aligned_cols=27  Identities=33%  Similarity=0.530  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        41 ~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349        41 KFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             HHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            589999999999999999999997654

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14296 chaperone protein DnaJ; Provisional

Probab=98.09  E-value=1.3e-06  Score=73.99  Aligned_cols=27  Identities=33%  Similarity=0.463  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||+||+.||+.+..
T Consensus        45 ~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296         45 KMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             HHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            599999999999999999999997654

>PRK14288 chaperone protein DnaJ; Provisional

Probab=98.06  E-value=1.9e-06  Score=72.92  Aligned_cols=27  Identities=44%  Similarity=0.619  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||++|+.||+.+..
T Consensus        45 ~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288         45 KFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            599999999999999999999997754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=97.99  E-value=2.9e-06  Score=72.38  Aligned_cols=26  Identities=31%  Similarity=0.486  Sum_probs=24.2

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|++||+|||||+||+.||+++.
T Consensus        51 ~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279         51 RFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            59999999999999999999999864

>KOG0718|consensus

Probab=97.95  E-value=4.1e-06  Score=73.38  Aligned_cols=30  Identities=23%  Similarity=0.468  Sum_probs=27.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQ   30 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~   30 (132)
                      +|+.|++||||||||.+|+.||..+.+...
T Consensus        54 ~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen   54 KFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            599999999999999999999999987644

>PRK14286 chaperone protein DnaJ; Provisional

Probab=97.91  E-value=5.2e-06  Score=70.34  Aligned_cols=27  Identities=33%  Similarity=0.524  Sum_probs=24.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||++|+.||+.+..
T Consensus        46 ~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (372)
T PRK14286         46 KFKEATEAYEILRDPKKRQAYDQFGKA   72 (372)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHhCch
Confidence            599999999999999999999997754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=97.90  E-value=5.2e-06  Score=70.30  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||++|+.||+++..
T Consensus        45 ~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287         45 KFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             HHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            599999999999999999999997754

>PRK14282 chaperone protein DnaJ; Provisional

Probab=97.85  E-value=6.5e-06  Score=69.57  Aligned_cols=27  Identities=30%  Similarity=0.543  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||++|+.||..+..
T Consensus        47 ~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282         47 KFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             HHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            599999999999999999999997653

>PRK14291 chaperone protein DnaJ; Provisional

Probab=97.84  E-value=7.3e-06  Score=69.60  Aligned_cols=27  Identities=41%  Similarity=0.641  Sum_probs=24.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||.+|+.||+++..
T Consensus        44 ~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291         44 KFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            599999999999999999999997764

>PRK14276 chaperone protein DnaJ; Provisional

Probab=97.83  E-value=7.3e-06  Score=69.55  Aligned_cols=27  Identities=22%  Similarity=0.440  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||++|+.||+++..
T Consensus        45 ~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276         45 KYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             HHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            599999999999999999999997754

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=97.83  E-value=1e-05  Score=51.43  Aligned_cols=22  Identities=45%  Similarity=0.841  Sum_probs=20.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLYE   22 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD   22 (132)
                      .|..|++||++|+||.+|+.||
T Consensus        43 ~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen   43 KFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHhcC
Confidence            3789999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14283 chaperone protein DnaJ; Provisional

Probab=97.82  E-value=8.1e-06  Score=69.18  Aligned_cols=27  Identities=30%  Similarity=0.535  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||.+|+.||+.+..
T Consensus        46 ~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283         46 KFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             HHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            599999999999999999999997653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=97.80  E-value=9.7e-06  Score=68.93  Aligned_cols=27  Identities=37%  Similarity=0.545  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||.+|+.||.++..
T Consensus        47 ~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277         47 KFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            599999999999999999999997653

>PRK14280 chaperone protein DnaJ; Provisional

Probab=97.78  E-value=1.1e-05  Score=68.48  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||.+|+.||+++..
T Consensus        45 ~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280         45 KFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             HHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            589999999999999999999997754

>PRK14299 chaperone protein DnaJ; Provisional

Probab=97.77  E-value=1.2e-05  Score=66.06  Aligned_cols=27  Identities=33%  Similarity=0.657  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+|||||.+|+.||..+..
T Consensus        45 ~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299         45 KFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            589999999999999999999997764

>PRK14285 chaperone protein DnaJ; Provisional

Probab=97.76  E-value=1.1e-05  Score=68.32  Aligned_cols=27  Identities=26%  Similarity=0.486  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||++|+.||.++..
T Consensus        45 ~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285         45 IFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             HHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            599999999999999999999997754

>PRK14297 chaperone protein DnaJ; Provisional

Probab=97.71  E-value=1e-05  Score=68.58  Aligned_cols=27  Identities=30%  Similarity=0.514  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+++..
T Consensus        46 ~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297         46 KFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             HHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            599999999999999999999997654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=97.70  E-value=1.3e-05  Score=67.90  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||.++..
T Consensus        46 ~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301         46 KFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            599999999999999999999997754

>PRK14284 chaperone protein DnaJ; Provisional

Probab=97.69  E-value=1.8e-05  Score=67.48  Aligned_cols=27  Identities=26%  Similarity=0.500  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||++|+.||+.+..
T Consensus        43 ~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284         43 RFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            599999999999999999999997754

>PRK14278 chaperone protein DnaJ; Provisional

Probab=97.68  E-value=1.4e-05  Score=67.87  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=24.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|++||+||+||++|+.||+.+.
T Consensus        44 ~f~~i~~Ay~vL~d~~~r~~YD~~G~   69 (378)
T PRK14278         44 KFKEISVAYEVLSDPEKRRIVDLGGD   69 (378)
T ss_pred             HHHHHHHHHHHhchhhhhhhhhccCC
Confidence            59999999999999999999998764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=97.67  E-value=2.1e-05  Score=66.42  Aligned_cols=27  Identities=30%  Similarity=0.543  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+++..
T Consensus        46 ~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294         46 LFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            489999999999999999999998754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=97.63  E-value=2.5e-05  Score=66.59  Aligned_cols=23  Identities=48%  Similarity=0.830  Sum_probs=22.2

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLYES   23 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~   23 (132)
                      +|++|++||+||+||.+|+.||+
T Consensus        51 ~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295         51 RFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             HHHHHHHHHHHHCchhhHHHHHH
Confidence            59999999999999999999998

>PRK14281 chaperone protein DnaJ; Provisional

Probab=97.62  E-value=2.1e-05  Score=67.13  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        45 ~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281         45 HFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            599999999999999999999997754

>KOG0691|consensus

Probab=97.62  E-value=3.3e-05  Score=64.23  Aligned_cols=29  Identities=31%  Similarity=0.529  Sum_probs=26.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQ   29 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~   29 (132)
                      +|+++++||+||+||.+|++||..+....
T Consensus        47 kFq~L~eAy~VL~D~~~R~~YDk~~k~~~   75 (296)
T KOG0691|consen   47 KFQELSEAYEVLSDEESRAAYDKLRKSGS   75 (296)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence            59999999999999999999999988653

>KOG0716|consensus

Probab=97.54  E-value=4.5e-05  Score=62.78  Aligned_cols=29  Identities=31%  Similarity=0.422  Sum_probs=26.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQ   29 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~   29 (132)
                      ||++|++||+||+||.+|..||.++....
T Consensus        73 kf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   73 KFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             HHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            69999999999999999999999977554

>PRK10767 chaperone protein DnaJ; Provisional

Probab=97.54  E-value=3.5e-05  Score=65.03  Aligned_cols=27  Identities=30%  Similarity=0.513  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+.+..
T Consensus        46 ~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767         46 KFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             HHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            589999999999999999999987654

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=97.52  E-value=4.9e-05  Score=62.73  Aligned_cols=26  Identities=35%  Similarity=0.693  Sum_probs=24.0

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|++||+||+||.+|+.||..+.
T Consensus        45 ~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266         45 RFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            59999999999999999999998764

>PRK14290 chaperone protein DnaJ; Provisional

Probab=97.49  E-value=3.5e-05  Score=65.07  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=24.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        46 ~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290         46 KFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             HHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            599999999999999999999987653

>PRK14289 chaperone protein DnaJ; Provisional

Probab=97.49  E-value=5.5e-05  Score=64.23  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=24.6

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        47 ~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289         47 KFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            599999999999999999999997653

>PRK14292 chaperone protein DnaJ; Provisional

Probab=97.48  E-value=4.1e-05  Score=64.62  Aligned_cols=27  Identities=33%  Similarity=0.535  Sum_probs=24.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+++..
T Consensus        43 ~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292         43 KFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             HHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            589999999999999999999997643

>PRK14293 chaperone protein DnaJ; Provisional

Probab=97.45  E-value=5.4e-05  Score=64.09  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=24.0

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|++||+||+||.+|+.||.++.
T Consensus        44 ~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293         44 RFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             HHHHHHHHHHHHhchHHHHHHhhccc
Confidence            58999999999999999999998765

>PRK14300 chaperone protein DnaJ; Provisional

Probab=97.45  E-value=5.3e-05  Score=64.19  Aligned_cols=27  Identities=37%  Similarity=0.587  Sum_probs=24.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+++..
T Consensus        44 ~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300         44 KFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             HHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            589999999999999999999997653

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.28  E-value=0.00027  Score=45.05  Aligned_cols=51  Identities=25%  Similarity=0.580  Sum_probs=31.0

Q ss_pred             EeeccccCCCCCCceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          65 IEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        65 It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      |++++|.-.........+| .|+....|.-.         ..+++     ++++.|++|||.|+|.
T Consensus         3 v~l~d~~~~~~~~~~~y~C-RCG~~f~i~e~---------~l~~~-----~~iv~C~sCSL~I~V~   53 (55)
T PF05207_consen    3 VSLDDMEFDEEEGVYSYPC-RCGGEFEISEE---------DLEEG-----EVIVQCDSCSLWIRVN   53 (55)
T ss_dssp             EETTTSEEETTTTEEEEEE-TTSSEEEEEHH---------HHHCT-------EEEETTTTEEEEEE
T ss_pred             EEhhhceecCCCCEEEEcC-CCCCEEEEcch---------hccCc-----CEEEECCCCccEEEEE
Confidence            4455554322223578899 99887443321         12222     8999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=97.27  E-value=0.00012  Score=69.01  Aligned_cols=28  Identities=39%  Similarity=0.547  Sum_probs=25.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|.+||+|||||.+|+.||..+...
T Consensus       614 kFq~I~EAYeVLSDp~kRk~YD~~G~~G  641 (1136)
T PTZ00341        614 KFKKINEAYQILGDIDKKKMYNKFGYDG  641 (1136)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence            5999999999999999999999977654

>KOG0717|consensus

Probab=97.24  E-value=0.00018  Score=63.05  Aligned_cols=28  Identities=32%  Similarity=0.497  Sum_probs=25.2

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|+.||+|||||..|+=||....+-
T Consensus        51 ~F~~i~aAYeVLSdp~eR~wyd~hreqi   78 (508)
T KOG0717|consen   51 QFQLIQAAYEVLSDPQERAWYDSHREQI   78 (508)
T ss_pred             HHHHHHHHHHHhcChHhhhhHHHHHHHH
Confidence            4999999999999999999999877643

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=97.15  E-value=0.00033  Score=53.62  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      |..|++||+||+||.+|+.|+..+..
T Consensus        50 s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356         50 ASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            56899999999999999999888753

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=97.11  E-value=0.00029  Score=54.03  Aligned_cols=27  Identities=30%  Similarity=0.303  Sum_probs=24.0

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      |..|++||++|+||.+|+.|+..+...
T Consensus        51 s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014         51 AATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             HHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            678999999999999999999877643

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=97.06  E-value=0.00036  Score=53.80  Aligned_cols=27  Identities=30%  Similarity=0.349  Sum_probs=24.4

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      |..|++||+||+||.+|+.|+..+...
T Consensus        54 s~~IN~AY~~L~~p~~Ra~YlL~l~g~   80 (173)
T PRK00294         54 SASLNEAYQTLKSPPRRARYLLALSGH   80 (173)
T ss_pred             HHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            679999999999999999999988753

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=97.04  E-value=0.00037  Score=52.78  Aligned_cols=26  Identities=31%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      |..|++||++|+||.+|+.|+..+..
T Consensus        39 s~~iN~AY~~L~~p~~Ra~ylL~l~g   64 (157)
T TIGR00714        39 STTLNQAYQTLKDPLMRAEYMLSLHG   64 (157)
T ss_pred             HHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            67899999999999999999998874

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0719|consensus

Probab=96.94  E-value=0.00036  Score=56.74  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=25.2

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++++.||.||+|.++|+.||..+.-.
T Consensus        58 kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   58 KFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            6999999999999999999999877543

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.00065  Score=50.30  Aligned_cols=25  Identities=40%  Similarity=0.577  Sum_probs=23.0

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQL   25 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l   25 (132)
                      +|+.|++||+||+||.+|+.||..+
T Consensus        49 ~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214          49 KFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             HHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            5899999999999999999999853

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=96.67  E-value=0.00091  Score=62.00  Aligned_cols=28  Identities=32%  Similarity=0.461  Sum_probs=25.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||++|+||.+|+.||..+...
T Consensus        43 kFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835        43 IFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            4899999999999999999999977643

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=96.65  E-value=0.0015  Score=50.52  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=24.0

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +..|++||++|+||.+|+.|+..+...
T Consensus        56 s~~iN~AY~tL~~p~~Ra~Yll~l~G~   82 (176)
T PRK03578         56 ATRANEAYQTLRDPLKRARYLLHLRGV   82 (176)
T ss_pred             HHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence            478999999999999999999877644

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=96.24  E-value=0.0021  Score=53.66  Aligned_cols=25  Identities=36%  Similarity=0.458  Sum_probs=22.7

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      |+.||+||+||+|+.+|.+||+--.
T Consensus        91 Fk~iqkA~evL~D~~~R~qyDS~df  115 (379)
T COG5269          91 FKLIQKAREVLGDRKLRLQYDSNDF  115 (379)
T ss_pred             HHHHHHHHHHhccHHHHhhcccccc
Confidence            8899999999999999999997544

>KOG0720|consensus

Probab=96.07  E-value=0.0046  Score=54.35  Aligned_cols=28  Identities=29%  Similarity=0.541  Sum_probs=25.6

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLSQQ   29 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~~~   29 (132)
                      |+.++.||++|+|+++|++||..+....
T Consensus       277 fk~Lq~Afevig~~~kR~eYd~e~~ken  304 (490)
T KOG0720|consen  277 FKKLQVAFEVIGDSVKRKEYDLELKKEN  304 (490)
T ss_pred             HHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence            8999999999999999999999887553

>KOG0714|consensus

Probab=95.91  E-value=0.0017  Score=50.45  Aligned_cols=26  Identities=38%  Similarity=0.612  Sum_probs=24.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|.+||+||+||.+|+.||....
T Consensus        46 ~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen   46 KFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             HHhhhhccccccCCHHHhhhccccCc
Confidence            58999999999999999999999887

>PHA03102 Small T antigen; Reviewed

Probab=95.85  E-value=0.0022  Score=48.73  Aligned_cols=28  Identities=4%  Similarity=-0.009  Sum_probs=24.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||++|+|+.+|+.||......
T Consensus        45 ~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102         45 KMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4899999999999999999999877544

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=95.78  E-value=0.0064  Score=46.91  Aligned_cols=24  Identities=33%  Similarity=0.253  Sum_probs=21.4

Q ss_pred             hhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           3 LKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         3 ~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      ..|++||.+|+||-+|++|=..+.
T Consensus        53 s~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773         53 AEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             HHHHHHHHHHCChHHHHHHHHHhc
Confidence            369999999999999999977766

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.62  E-value=0.02  Score=33.12  Aligned_cols=34  Identities=15%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             eec-cCCCeEEEeeccccCCCCCCceEEECCCCCceEEE
Q psy7115          55 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI   92 (132)
Q Consensus        55 ~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV   92 (132)
                      ..| +|+..|.|..+.+...    ...+.|++|...+.|
T Consensus         3 ~~CP~C~~~~~v~~~~~~~~----~~~v~C~~C~~~~~~   37 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLGAN----GGKVRCGKCGHVWYA   37 (38)
T ss_pred             EECCCCCCEEEeCHHHcCCC----CCEEECCCCCCEEEe
Confidence            568 9999999999988754    347999999987765

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=93.23  E-value=0.082  Score=30.75  Aligned_cols=30  Identities=20%  Similarity=0.665  Sum_probs=25.2

Q ss_pred             ec-cCCCeEEEeeccccCCCCCCceEEECCCCCce
Q psy7115          56 PC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLL   89 (132)
Q Consensus        56 ~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~   89 (132)
                      .| +|+..|.|..+.+-..    ...++|+.|+-.
T Consensus         4 ~Cp~C~~~y~i~d~~ip~~----g~~v~C~~C~~~   34 (36)
T PF13717_consen    4 TCPNCQAKYEIDDEKIPPK----GRKVRCSKCGHV   34 (36)
T ss_pred             ECCCCCCEEeCCHHHCCCC----CcEEECCCCCCE
Confidence            58 9999999999988865    568999999743

>KOG0550|consensus

Probab=92.99  E-value=0.049  Score=47.85  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=22.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQL   25 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l   25 (132)
                      +|++|-+||.+||||.+|..||...
T Consensus       416 kFkevgeAy~il~d~~kr~r~dsg~  440 (486)
T KOG0550|consen  416 KFKEVGEAYTILSDPMKRVRFDSGQ  440 (486)
T ss_pred             HHHHHHHHHHHhcCHHHHhhccccc
Confidence            6999999999999999999999643

>KOG0624|consensus

Probab=92.92  E-value=0.051  Score=47.20  Aligned_cols=24  Identities=25%  Similarity=0.552  Sum_probs=22.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQ   24 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~   24 (132)
                      ||..|..|=|||+||++|+++|..
T Consensus       439 KFIDIAAAKEVLsd~EkRrqFDnG  462 (504)
T KOG0624|consen  439 KFIDIAAAKEVLSDPEKRRQFDNG  462 (504)
T ss_pred             hhhhHHHHHHhhcCHHHHhhccCC
Confidence            699999999999999999999964

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=91.73  E-value=0.31  Score=30.55  Aligned_cols=35  Identities=31%  Similarity=0.692  Sum_probs=25.1

Q ss_pred             eEeeec-cCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEec
Q psy7115          52 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITAR   95 (132)
Q Consensus        52 ~~~~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~   95 (132)
                      ...|.| |||-.|.+    +..     ...+.|+-|+-+|-+.-.
T Consensus         4 ~~~Y~C~~Cg~~~~~----~~~-----~~~irCp~Cg~rIl~K~R   39 (49)
T COG1996           4 MMEYKCARCGREVEL----DQE-----TRGIRCPYCGSRILVKER   39 (49)
T ss_pred             eEEEEhhhcCCeeeh----hhc-----cCceeCCCCCcEEEEecc
Confidence            568999 99999822    212     345899999988876543

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=91.45  E-value=0.22  Score=28.97  Aligned_cols=32  Identities=16%  Similarity=0.585  Sum_probs=26.2

Q ss_pred             eec-cCCCeEEEeeccccCCCCCCceEEECCCCCceE
Q psy7115          55 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLL   90 (132)
Q Consensus        55 ~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~i   90 (132)
                      -.| .|+..|.|+.+.|..+    ...|.|+.|.-..
T Consensus         3 i~CP~C~~~f~v~~~~l~~~----~~~vrC~~C~~~f   35 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLPAG----GRKVRCPKCGHVF   35 (37)
T ss_pred             EECCCCCceEEcCHHHcccC----CcEEECCCCCcEe
Confidence            358 8999999999998876    5689999997543

>KOG3192|consensus

Probab=90.38  E-value=0.17  Score=39.01  Aligned_cols=26  Identities=35%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             hhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           3 LKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         3 ~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      .++++||.+|.||-+|+.|=..+...
T Consensus        59 a~lnkAY~TLk~pL~RA~Yilkl~g~   84 (168)
T KOG3192|consen   59 AELNKAYDTLKDPLARARYLLKLKGQ   84 (168)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhCC
Confidence            46899999999999999998777653

>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.10  E-value=0.33  Score=32.17  Aligned_cols=35  Identities=20%  Similarity=0.563  Sum_probs=24.6

Q ss_pred             Eeeec-cCCCe--EEEeeccccCCCCCCceEEECCCCCceEE
Q psy7115          53 FTYPC-RCGAE--FCIEEQDTEGDGSDDNILIACDTCSLLLE   91 (132)
Q Consensus        53 ~~~~C-RCGg~--f~It~edL~~G~~~~~~vv~C~sCSL~ik   91 (132)
                      ..+.| .|+..  -.|+...-..|    .++|+||+|.-+=.
T Consensus         3 l~FTC~~C~~Rs~~~~sk~aY~~G----vViv~C~gC~~~Hl   40 (66)
T PF05180_consen    3 LTFTCNKCGTRSAKMFSKQAYHKG----VVIVQCPGCKNRHL   40 (66)
T ss_dssp             EEEEETTTTEEEEEEEEHHHHHTS----EEEEE-TTS--EEE
T ss_pred             EEEEcCCCCCccceeeCHHHHhCC----eEEEECCCCcceee
Confidence            56889 99965  66777766677    89999999987633

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=88.32  E-value=0.7  Score=26.51  Aligned_cols=32  Identities=25%  Similarity=0.712  Sum_probs=23.2

Q ss_pred             eEeeec-cCCCeEEEeeccccCCCCCCceEEECCCCCce
Q psy7115          52 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLL   89 (132)
Q Consensus        52 ~~~~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~   89 (132)
                      .|.|.| .||..|.+...--.      ...+.|+.|+-.
T Consensus         3 ~Y~y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~~   35 (41)
T smart00834        3 IYEYRCEDCGHTFEVLQKISD------DPLATCPECGGD   35 (41)
T ss_pred             CEEEEcCCCCCEEEEEEecCC------CCCCCCCCCCCc
Confidence            488999 99999887754211      346789999864

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>KOG0722|consensus

Probab=87.13  E-value=0.27  Score=41.03  Aligned_cols=28  Identities=39%  Similarity=0.654  Sum_probs=25.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      .|..|.+||++|.|.+.|+.||-.+.+.
T Consensus        74 ~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   74 LFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             hhhhhhcccccccchhhHHhHHHHhcCc
Confidence            4899999999999999999999888754

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=86.93  E-value=1.4  Score=28.00  Aligned_cols=36  Identities=33%  Similarity=0.731  Sum_probs=27.1

Q ss_pred             eec-cCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCC
Q psy7115          55 YPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCG   97 (132)
Q Consensus        55 ~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~   97 (132)
                      ..| +||..+.|....+  |     .++.|+.|...+.|.....
T Consensus         3 ~~CP~CG~~iev~~~~~--G-----eiV~Cp~CGaeleVv~~~p   39 (54)
T TIGR01206         3 FECPDCGAEIELENPEL--G-----ELVICDECGAELEVVSLDP   39 (54)
T ss_pred             cCCCCCCCEEecCCCcc--C-----CEEeCCCCCCEEEEEeCCC
Confidence            368 9999888854433  4     3779999999999876654

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=85.39  E-value=1.8  Score=26.22  Aligned_cols=31  Identities=26%  Similarity=0.626  Sum_probs=23.1

Q ss_pred             eeec-cCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEe
Q psy7115          54 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITA   94 (132)
Q Consensus        54 ~~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~   94 (132)
                      .|.| +||..|.+.     .     ...+.|+.|.-.|-...
T Consensus         2 ~Y~C~~Cg~~~~~~-----~-----~~~irC~~CG~rIlyK~   33 (44)
T smart00659        2 IYICGECGRENEIK-----S-----KDVVRCRECGYRILYKK   33 (44)
T ss_pred             EEECCCCCCEeecC-----C-----CCceECCCCCceEEEEe
Confidence            5889 999988776     1     24589999997765443

present in RNA polymerase I, II and III

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=83.92  E-value=1.6  Score=25.88  Aligned_cols=31  Identities=29%  Similarity=0.803  Sum_probs=23.2

Q ss_pred             eEeeec-cCCCeEEEeeccccCCCCCCceEEECCCCCc
Q psy7115          52 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL   88 (132)
Q Consensus        52 ~~~~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL   88 (132)
                      .|.|.| .||..|++...--+      ...+.|+.|.-
T Consensus         3 ~Yey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (42)
T PF09723_consen    3 IYEYRCEECGHEFEVLQSISE------DDPVPCPECGS   34 (42)
T ss_pred             CEEEEeCCCCCEEEEEEEcCC------CCCCcCCCCCC
Confidence            488999 89999877654211      35689999986

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PHA02624 large T antigen; Provisional

Probab=83.68  E-value=0.53  Score=43.20  Aligned_cols=21  Identities=10%  Similarity=0.186  Sum_probs=20.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLY   21 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~Y   21 (132)
                      +|++|++||++|+|+.+|+.|
T Consensus        51 kfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         51 KMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHHHHHHhcHHHhhhc
Confidence            589999999999999999999

>KOG0721|consensus

Probab=82.56  E-value=1  Score=36.52  Aligned_cols=27  Identities=30%  Similarity=0.389  Sum_probs=24.3

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      |.+|.+||+-|+|+.+|+.|-.++...
T Consensus       142 ~~~I~KAY~aLTD~~sreN~ekYG~PD  168 (230)
T KOG0721|consen  142 FEAIAKAYQALTDKKSRENWEKYGNPD  168 (230)
T ss_pred             HHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence            789999999999999999999887644

>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins

Probab=81.82  E-value=1.1  Score=20.78  Aligned_cols=13  Identities=31%  Similarity=0.524  Sum_probs=11.3

Q ss_pred             ChhhHHHHHHhcC
Q psy7115           1 MFLKINEAWNILK   13 (132)
Q Consensus         1 kF~~I~eAyevLs   13 (132)
                      +|.+|..||+.|+
T Consensus         2 ~~~~V~~aY~~l~   14 (14)
T PF07709_consen    2 KFEKVKNAYEQLS   14 (14)
T ss_pred             cHHHHHHHHHhcC
Confidence            5899999999885

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=81.67  E-value=1.6  Score=26.54  Aligned_cols=37  Identities=24%  Similarity=0.691  Sum_probs=24.9

Q ss_pred             eEeeec-cCCCeEEEeeccccCCCCCCceEEECCCCCc-eE-EEEe
Q psy7115          52 MFTYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSL-LL-EITA   94 (132)
Q Consensus        52 ~~~~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL-~i-kV~~   94 (132)
                      .|.|.| .||..|++... +..     ...+.|+.|.- .+ +|..
T Consensus         3 ~Yey~C~~Cg~~fe~~~~-~~~-----~~~~~CP~Cg~~~~~r~~s   42 (52)
T TIGR02605         3 IYEYRCTACGHRFEVLQK-MSD-----DPLATCPECGGEKLRRLLS   42 (52)
T ss_pred             CEEEEeCCCCCEeEEEEe-cCC-----CCCCCCCCCCCCceeEEec
Confidence            488999 89999987632 111     24577999985 45 4443

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		2e-06
1yws_A	82	Solution Structure Of Ybl071w-A From Saccharomyces		8e-06
1yop_A	83	The Solution Structure Of Kti11p Length = 83		3e-05
2jr7_A	89	Solution Structure Of Human Desr1 Length = 89		7e-04

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I++AW IL +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG
Sbjct: 59  FIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCG 118
Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            ++ + +     D +++  LI+CDTCSL++E+
Sbjct: 119 GKYSVSK-----DEAEEVSLISCDTCSLIIEL 145

>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces Cerevisiae Length = 82

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 91
          M+ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 1  MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55
Query: 92 IT 93
          + 
Sbjct: 56 VV 57

>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p Length = 83

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDGSDDNILIACDTCSLLLE 91
          ++ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 2  VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 56
Query: 92 IT 93
          + 
Sbjct: 57 VV 58

>pdb|2JR7|A Chain A, Solution Structure Of Human Desr1 Length = 89

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 35 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           +  V + D ++  +S+ + YPC CG  F I ++D E +G D   +  C +CSL++++
Sbjct: 4  FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE-NGED---VATCPSCSLIIKV 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-18
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	1e-11
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	5e-11
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	1e-10

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 74.9 bits (184), Expect = 2e-18
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 2   FLKINEAWNILKDEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCG 60
           F++I++AW IL +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG
Sbjct: 59  FIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCG 118

Query: 61  AEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
            ++ + + + E     +  LI+CDTCSL++E+
Sbjct: 119 GKYSVSKDEAE-----EVSLISCDTCSLIIEL 145

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Length = 83

 Score = 55.6 bits (134), Expect = 1e-11
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          ++ Y  + + DM  + E+QMFTYPC CG  F I   D      +   +  C +CSL++++
Sbjct: 2  VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 57

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Length = 83

 Score = 54.1 bits (130), Expect = 5e-11
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 27 SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTC 86
          S        +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +C
Sbjct: 3  SGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSC 58

Query: 87 SLLLEI 92
          SL++++
Sbjct: 59 SLIIKV 64

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Length = 89

 Score = 53.0 bits (127), Expect = 1e-10
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 35 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4  FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE----NGEDVATCPSCSLIIKV 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.91
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	99.85
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	99.84
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	99.82
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	98.28
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	98.27
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	98.24
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	98.23
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	98.2
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	98.2
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	98.2
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	98.19
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	98.12
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	98.11
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	98.1
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	98.09
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	98.06
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	98.05
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	97.91
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	97.9
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	97.88
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.85
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	97.85
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	97.81
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	97.67
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	97.61
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	97.35
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.95
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	96.88
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	96.86
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	96.82
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	96.64
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	93.98
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	91.64
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	90.31
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	81.56

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.91  E-value=1.4e-24  Score=161.13  Aligned_cols=90  Identities=30%  Similarity=0.647  Sum_probs=80.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhhhc-ccccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCce
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQTH-MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNI   79 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~~~-~~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~   79 (132)
                      +|++|++||+||+||.+|+.||..+.....+. +.....+.+++|.+.++...|+++||||+.|.|++++|..|     .
T Consensus        58 ~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~~~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~-----~  132 (155)
T 2l6l_A           58 KFIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEV-----S  132 (155)
T ss_dssp             HHHHHHHHHHHSSSHHHHCHHHHHHHHHHHHTTCSSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHC-----C
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHcchhhccccccccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCC-----C
Confidence            48999999999999999999999998765443 56678889999999988889999999999999999999875     6


Q ss_pred             EEECCCCCceEEEEec
Q psy7115          80 LIACDTCSLLLEITAR   95 (132)
Q Consensus        80 vv~C~sCSL~ikV~~~   95 (132)
                      +|+|++||||++|+|.
T Consensus       133 ~v~C~sCSl~~~v~~~  148 (155)
T 2l6l_A          133 LISCDTCSLIIELLHY  148 (155)
T ss_dssp             EEECSSSSCEEEEECC
T ss_pred             EEECCCCceEEEEEEc
Confidence            8999999999999986

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=99.85  E-value=5e-22  Score=137.41  Aligned_cols=69  Identities=25%  Similarity=0.533  Sum_probs=61.2

Q ss_pred             cccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCCcceeecccc
Q psy7115          34 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQD  106 (132)
Q Consensus        34 ~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~~~~~~~  106 (132)
                      .++++|+|+||.|+++++.|+||||||+.|.|++++|++|    ..+++|++|||||+|+|+..+...++++.
T Consensus         3 ~vydeV~LeDm~~de~~~~y~ypCrCGd~F~IteedLe~g----e~iv~C~sCSL~IkV~y~~~~~~~~~~~~   71 (89)
T 2jr7_A            3 VFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENG----EDVATCPSCSLIIKVIYDKDQFVSGETVP   71 (89)
T ss_dssp             SCSCEEETTTSEEETTTTEEEEECTTSSEEEEEHHHHHHT----CCEEECTTTCCEEEEECCHHHHCCSSCCC
T ss_pred             cceeEEEHHHcEEcCCCCEEEEcCCCCCEEEECHHHHhCC----CEEEECCCCccEEEEEEcccccccccccc
Confidence            4789999999999998889999999999999999999988    68999999999999999877765444433

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=99.84  E-value=5.2e-22  Score=135.80  Aligned_cols=63  Identities=32%  Similarity=0.645  Sum_probs=58.6

Q ss_pred             cccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCCcce
Q psy7115          34 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEF  100 (132)
Q Consensus        34 ~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~  100 (132)
                      .++++|+|+||.|+++++.|+||||||+.|.|++++|.+|    ..+++|++|||||+|+|...+..
T Consensus         3 ~~~dev~leDm~~de~~~~y~ypCrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~~~~d~~   65 (83)
T 1yop_A            3 STYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVFDKEDLA   65 (83)
T ss_dssp             SCSBCCBGGGSEEETTTTEEEEEETTTEEEEEEHHHHHTT----CCEEECSSSCCEEECBCCSSHHH
T ss_pred             ceeeEEEHHHcEEcCCCCEEEEeCCCCCeEEECHHHHhCC----CEEEECCCCccEEEEEEcccccc
Confidence            3789999999999998889999999999999999999988    78999999999999999887764

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=99.82  E-value=2.9e-21  Score=132.09  Aligned_cols=64  Identities=25%  Similarity=0.596  Sum_probs=58.9

Q ss_pred             ccccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCCcce
Q psy7115          33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEF  100 (132)
Q Consensus        33 ~~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~  100 (132)
                      ..++++|+|+||.|+++...|+||||||+.|.|++++|++|    ..+++|++|||||||+|+..+..
T Consensus         9 ~~~~dev~LeDm~~de~~~~y~y~CrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~~~~~~~   72 (83)
T 1wge_A            9 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIYDKDQFM   72 (83)
T ss_dssp             CCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEECCHHHHH
T ss_pred             ceeeEEEEHHHceEccCCCEEEEeCCCCCEEEECHHHHhCC----CEEEECCCCceEEEEEecccccc
Confidence            46889999999999988889999999999999999999988    78999999999999999876654

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=98.28  E-value=2.4e-07  Score=60.07  Aligned_cols=26  Identities=35%  Similarity=0.652  Sum_probs=23.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|++||+||+||.+|+.||..+.
T Consensus        47 ~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A           47 QFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            48999999999999999999998764

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=2.8e-07  Score=63.28  Aligned_cols=28  Identities=32%  Similarity=0.561  Sum_probs=25.2

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        59 ~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           59 RFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            4899999999999999999999977643

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=98.24  E-value=4.5e-07  Score=61.44  Aligned_cols=30  Identities=33%  Similarity=0.605  Sum_probs=26.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQQ   30 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~~   30 (132)
                      +|++|++||+||+||.+|+.||..+.....
T Consensus        47 ~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   76 (92)
T 2o37_A           47 KFKEISEAFEILNDPQKREIYDQYGLEAAR   76 (92)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence            489999999999999999999998876644

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=98.23  E-value=5.8e-07  Score=58.67  Aligned_cols=28  Identities=25%  Similarity=0.508  Sum_probs=25.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||++|+||.+|+.||..+...
T Consensus        44 ~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A           44 KFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            4899999999999999999999887654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=4.2e-07  Score=59.93  Aligned_cols=27  Identities=30%  Similarity=0.560  Sum_probs=24.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||++|+||.+|+.||..+..
T Consensus        52 ~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A           52 RFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             HHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            489999999999999999999987643

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=4.3e-07  Score=59.45  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=24.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        48 ~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A           48 AFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            489999999999999999999987754

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=4.6e-07  Score=63.53  Aligned_cols=29  Identities=34%  Similarity=0.426  Sum_probs=26.2

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQ   29 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~   29 (132)
                      +|++|++||+||+||.+|+.||+.+....
T Consensus        62 ~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           62 TFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            48999999999999999999999887653

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=3.5e-07  Score=59.96  Aligned_cols=27  Identities=33%  Similarity=0.539  Sum_probs=24.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        49 ~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A           49 KFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            489999999999999999999987653

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=98.12  E-value=7.5e-07  Score=59.78  Aligned_cols=27  Identities=30%  Similarity=0.540  Sum_probs=24.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||++|+||.+|+.||..+..
T Consensus        58 ~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           58 RFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            489999999999999999999987754

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=98.11  E-value=8.6e-07  Score=61.60  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=25.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        61 ~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           61 RFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            4899999999999999999999988643

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=7.9e-07  Score=59.66  Aligned_cols=29  Identities=34%  Similarity=0.430  Sum_probs=25.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQ   29 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~   29 (132)
                      +|++|++||++|+||.+|+.||..+....
T Consensus        48 ~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A           48 KFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             HHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            48999999999999999999999886543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=98.09  E-value=9.5e-07  Score=60.92  Aligned_cols=28  Identities=25%  Similarity=0.516  Sum_probs=24.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        45 ~f~~I~~AY~vL~d~~~R~~YD~~g~~~   72 (99)
T 2lgw_A           45 KFKEVAEAYEVLSDKHKREIYDRYGREG   72 (99)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            4899999999999999999999987654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.06  E-value=1.1e-06  Score=59.22  Aligned_cols=28  Identities=32%  Similarity=0.555  Sum_probs=25.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        52 ~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A           52 KFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            4899999999999999999999887544

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.05  E-value=1.5e-06  Score=60.72  Aligned_cols=28  Identities=32%  Similarity=0.434  Sum_probs=25.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        59 ~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           59 KFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            4899999999999999999999877654

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=97.91  E-value=3.5e-06  Score=64.04  Aligned_cols=25  Identities=32%  Similarity=0.424  Sum_probs=24.0

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQL   25 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l   25 (132)
                      +|++|++||+||+||.+|+.||..+
T Consensus        57 ~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           57 QSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             GGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcChHHHHHHHHHH
Confidence            5999999999999999999999988

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=97.88  E-value=3.6e-06  Score=63.27  Aligned_cols=28  Identities=29%  Similarity=0.338  Sum_probs=25.3

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        50 ~f~~In~AY~vL~dp~~R~~Yd~~l~g~   77 (171)
T 1fpo_A           50 QSATINQAWQTLRHPLMRAEYLLSLHGF   77 (171)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence            4899999999999999999999988644

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.85  E-value=5.5e-06  Score=61.83  Aligned_cols=28  Identities=46%  Similarity=0.592  Sum_probs=25.5

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||++|+||.+|+.||+.+...
T Consensus        44 ~f~~i~~Ay~~L~~~~~r~~yd~~~~~~   71 (210)
T 3apq_A           44 DFLKINRAYEVLKDEDLRKKYDKYGEKG   71 (210)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHhcccc
Confidence            4899999999999999999999988654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=97.85  E-value=7.9e-07  Score=61.28  Aligned_cols=29  Identities=28%  Similarity=0.454  Sum_probs=25.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQQ   29 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~~   29 (132)
                      +|++|++||+||+||.+|+.||..+....
T Consensus        45 ~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A           45 KFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             HHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            48999999999999999999999886543

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=97.81  E-value=5.5e-06  Score=64.15  Aligned_cols=28  Identities=25%  Similarity=0.247  Sum_probs=24.8

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||+||+||.+|+.||..+...
T Consensus        92 ~f~~In~AY~vLsdp~~R~~Yd~~l~G~  119 (207)
T 3bvo_A           92 HSTLVNDAYKTLLAPLSRGLYLLKLHGI  119 (207)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence            4899999999999999999999877643

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=97.67  E-value=4.5e-06  Score=63.45  Aligned_cols=26  Identities=12%  Similarity=-0.006  Sum_probs=24.0

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      +|++|++||+||+||.+|+.||+.+.
T Consensus        51 ~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           51 KMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             TTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             HHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            59999999999999999999998664

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=97.61  E-value=8.3e-06  Score=66.98  Aligned_cols=27  Identities=37%  Similarity=0.694  Sum_probs=0.0

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||+.+..
T Consensus        69 ~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           69 KFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            599999999999999999999997543

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=97.35  E-value=1.1e-05  Score=57.12  Aligned_cols=23  Identities=13%  Similarity=0.157  Sum_probs=21.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLYES   23 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~   23 (132)
                      +|++|++||+||+||.+|+.||.
T Consensus        48 ~f~~I~~AYevL~d~~~R~~~~~   70 (114)
T 1gh6_A           48 KMKKMNTLYKKMEDGVKYAHQPD   70 (114)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHHCCHHHHHHhhh
Confidence            69999999999999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.95  E-value=9.1e-05  Score=65.09  Aligned_cols=28  Identities=46%  Similarity=0.592  Sum_probs=18.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|++|++||++|+||.+|+.||+.+...
T Consensus        63 ~f~~i~~ay~~L~~~~~r~~yd~~~~~~   90 (780)
T 3apo_A           63 DFLKINRAYEVLKDEDLRKKYDKYGEKG   90 (780)
T ss_dssp             -----CTHHHHHHSHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhhcccc
Confidence            5899999999999999999999987644

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=96.88  E-value=0.00071  Score=46.30  Aligned_cols=51  Identities=24%  Similarity=0.504  Sum_probs=31.1

Q ss_pred             EeeccccCCCCCCceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          65 IEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        65 It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      |..++|.-........-+|+ |.-...|.-...         ++     |.++++|++|||.|+|.
T Consensus         8 V~LeDm~~de~~~~y~ypCr-CGd~F~IteedL---------e~-----ge~iv~C~sCSL~IkV~   58 (89)
T 2jr7_A            8 VEIEDFQYDEDSETYFYPCP-CGDNFSITKEDL---------EN-----GEDVATCPSCSLIIKVI   58 (89)
T ss_dssp             EETTTSEEETTTTEEEEECT-TSSEEEEEHHHH---------HH-----TCCEEECTTTCCEEEEE
T ss_pred             EEHHHcEEcCCCCEEEEcCC-CCCEEEECHHHH---------hC-----CCEEEECCCCccEEEEE
Confidence            34455442211235688998 977654443221         11     34699999999999985

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=96.86  E-value=0.00088  Score=45.27  Aligned_cols=52  Identities=23%  Similarity=0.475  Sum_probs=32.9

Q ss_pred             EEeeccccCCCCCCceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          64 CIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        64 ~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      .|..++|.-.........+|+ |.-...|.-...         +     .|.+++.|++|||.|+|.
T Consensus        14 ev~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL---------~-----~ge~iv~C~sCSL~I~V~   65 (83)
T 1wge_A           14 EVEIEDFQYDEDSETYFYPCP-CGDNFAITKEDL---------E-----NGEDVATCPSCSLIIKVI   65 (83)
T ss_dssp             EEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHH---------H-----TTCCEEECTTTCCEEEEE
T ss_pred             EEEHHHceEccCCCEEEEeCC-CCCEEEECHHHH---------h-----CCCEEEECCCCceEEEEE
Confidence            455666653222235688998 976654443221         1     134699999999999985

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=96.82  E-value=0.00041  Score=46.92  Aligned_cols=38  Identities=24%  Similarity=0.531  Sum_probs=26.8

Q ss_pred             ceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          78 NILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        78 ~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      ....+|+ |+-...|.-...         +     .|.+++.|++|||.|+|.
T Consensus        21 ~y~ypCr-CGd~F~it~edL---------~-----~ge~iv~C~sCSL~I~V~   58 (83)
T 1yop_A           21 MFTYPCP-CGDRFQIYLDDM---------F-----EGEKVAVCPSCSLMIDVV   58 (83)
T ss_dssp             EEEEEET-TTEEEEEEHHHH---------H-----TTCCEEECSSSCCEEECB
T ss_pred             EEEEeCC-CCCeEEECHHHH---------h-----CCCEEEECCCCccEEEEE
Confidence            5678998 985554443221         1     246899999999999874

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=96.64  E-value=0.00019  Score=47.31  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=18.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLY   21 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~Y   21 (132)
                      +|++|++||++|+||.+|..+
T Consensus        51 ~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           51 LMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            499999999999999999764

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=93.98  E-value=0.0061  Score=40.95  Aligned_cols=19  Identities=16%  Similarity=0.221  Sum_probs=16.8

Q ss_pred             ChhhHHHHHHhcCChhHHH
Q psy7115           1 MFLKINEAWNILKDEKERK   19 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~   19 (132)
                      +|++|++||+||+|+..|.
T Consensus        59 ~F~~I~~AYevL~~~~~r~   77 (88)
T 1iur_A           59 VFKHLQNEINRLEKQAFLD   77 (88)
T ss_dssp             HHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHhhcccc
Confidence            4999999999999998773

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=91.64  E-value=0.14  Score=36.93  Aligned_cols=37  Identities=35%  Similarity=0.754  Sum_probs=25.3

Q ss_pred             ceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          78 NILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        78 ~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      ....+|+ |...-.|..   ++.  +    .|      +++.|.+|||.|+|.
T Consensus       110 ~f~~~Cr-CG~~f~i~~---~~l--~----~~------~~v~C~sCSl~~~v~  146 (155)
T 2l6l_A          110 SFYLSCR-CGGKYSVSK---DEA--E----EV------SLISCDTCSLIIELL  146 (155)
T ss_dssp             EEEEECS-SSCEEEEET---THH--H----HC------CEEECSSSSCEEEEE
T ss_pred             EEEEcCC-CCCeEEecH---HHh--C----CC------CEEECCCCceEEEEE
Confidence            5678998 986644332   111  1    11      899999999999875

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}

Probab=90.31  E-value=0.21  Score=34.69  Aligned_cols=36  Identities=25%  Similarity=0.705  Sum_probs=29.9

Q ss_pred             ceEeeec-cCCCe--EEEeeccccCCCCCCceEEECCCCCceE
Q psy7115          51 QMFTYPC-RCGAE--FCIEEQDTEGDGSDDNILIACDTCSLLL   90 (132)
Q Consensus        51 ~~~~~~C-RCGg~--f~It~edL~~G~~~~~~vv~C~sCSL~i   90 (132)
                      ....+.| .|+..  -.|+....+.|    .++|+|++|.-+=
T Consensus        10 ~~l~FTC~~C~tRs~k~iSk~aY~~G----vViv~C~gC~n~H   48 (100)
T 2e2z_A           10 MMIAFTCKKCNTRSSHTMSKQAYEKG----TVLISCPHCKVRH   48 (100)
T ss_dssp             EEEEEEETTTTEEEEEEEEHHHHHTS----EEEEECTTTCCEE
T ss_pred             EEEEEEccCCCCcchhhcCHHHhhCC----EEEEEcCCCccce
Confidence            3578999 99974  88888888888    8999999999763

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=81.56  E-value=0.21  Score=30.30  Aligned_cols=31  Identities=19%  Similarity=0.508  Sum_probs=19.9

Q ss_pred             eeec-cCCCeEEEeeccccCCCCCCceEEECCCCCceEE
Q psy7115          54 TYPC-RCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLE   91 (132)
Q Consensus        54 ~~~C-RCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ik   91 (132)
                      .|.| |||-.|  +.++|+.-     .-+-|+-|...|-
T Consensus         3 iY~C~rCg~~f--s~~el~~l-----P~IrCpyCGyrii   34 (48)
T 4ayb_P            3 VYRCGKCWKTF--TDEQLKVL-----PGVRCPYCGYKII   34 (48)
T ss_dssp             --CCCCTTTTC--CCCCSCCC-----SSSCCTTTCCSCE
T ss_pred             EEEeeccCCCc--cHHHHhhC-----CCcccCccCcEEE
Confidence            5789 999988  44555431     2367999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1ywsa1	82	g.41.17.1 (A:1-82) Diphthamide biosynthesis protei	5e-12
d1wgea1	70	g.41.17.1 (A:8-77) DelGEF-interacting protein 1, D	4e-11

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 82

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.5 bits (134), Expect = 5e-12
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 33 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
          M+ Y  + + DM  + E+QMFTYPC CG  F I   D      +   +  C +CSL++++
Sbjct: 1  MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 56

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (127), Expect = 4e-11
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 35 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEI 92
           +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4  FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSCSLIIKV 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	99.86
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	99.85
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	98.42
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	98.02
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	97.76
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	97.26
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	97.1
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	97.0
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	87.76

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.3e-23  Score=141.65  Aligned_cols=61  Identities=33%  Similarity=0.694  Sum_probs=57.3

Q ss_pred             cccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCCc
Q psy7115          34 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGA   98 (132)
Q Consensus        34 ~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e   98 (132)
                      .++++|+|+||.|+++++.|+||||||+.|.|++++|++|    +.+++|++|||||||+|+.++
T Consensus         2 s~ydev~LeDm~~ded~~~~~ypCrCGd~F~it~~dLe~g----e~v~~C~sCSL~IrVif~~ed   62 (82)
T d1ywsa1           2 STYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVFDKED   62 (82)
T ss_dssp             CCCCEEETTTSEEETTTTEEEECCSSSSCEEEEHHHHHTT----CCEEEETTTTEEEEEECCHHH
T ss_pred             ccccEEEecceEEeCCCCEEEeccccCCeEEEcHHHHhCC----CeEEeCCCCceEEEEEechhH
Confidence            4789999999999999899999999999999999999998    789999999999999997654

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.9e-23  Score=135.16  Aligned_cols=61  Identities=26%  Similarity=0.642  Sum_probs=56.7

Q ss_pred             cccccccccCcEEcCccceEeeeccCCCeEEEeeccccCCCCCCceEEECCCCCceEEEEecCCc
Q psy7115          34 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDGSDDNILIACDTCSLLLEITARCGA   98 (132)
Q Consensus        34 ~~~d~v~LdDm~~~e~~~~~~~~CRCGg~f~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e   98 (132)
                      .++++|+|+||.|+++++.|+||||||+.|.|++++|++|    +.+++|++|||||||+|+.++
T Consensus         3 ~~~dev~leD~~~dee~~~~~ypCpCGd~F~it~~dLe~g----e~V~~C~sCSL~ikVif~~e~   63 (70)
T d1wgea1           3 VFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIYDKDQ   63 (70)
T ss_dssp             CCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEECCHHH
T ss_pred             ceEEEEEeeeeeEeCCCCEEEeCCCCCCeEEECHHHHhCC----CeEEeCCCCceEEEEEEChHH
Confidence            4689999999999999899999999999999999999998    889999999999999997544

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=5.5e-08  Score=62.57  Aligned_cols=27  Identities=30%  Similarity=0.522  Sum_probs=24.7

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||.++..
T Consensus        45 ~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_          45 KFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            389999999999999999999988754

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.7e-08  Score=62.64  Aligned_cols=28  Identities=25%  Similarity=0.508  Sum_probs=25.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLSQ   28 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~~   28 (132)
                      +|+.|++||+||+||.+|+.||+.+...
T Consensus        44 ~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_          44 KFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            3899999999999999999999877654

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=9.8e-07  Score=56.32  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=22.9

Q ss_pred             hhhHHHHHHhcCChhHHHHHHHHhh
Q psy7115           2 FLKINEAWNILKDEKERKLYESQLL   26 (132)
Q Consensus         2 F~~I~eAyevLsdp~~R~~YD~~l~   26 (132)
                      |..|++||+||+||.+|++|+..+.
T Consensus        51 ~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1          51 SATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            7899999999999999999988764

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=97.76  E-value=6.7e-07  Score=61.31  Aligned_cols=27  Identities=11%  Similarity=-0.041  Sum_probs=24.1

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHhhh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQLLS   27 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l~~   27 (132)
                      +|++|++||+||+||.+|+.||..+..
T Consensus        48 ~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_          48 KMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            699999999999999999999975543

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00011  Score=46.80  Aligned_cols=52  Identities=23%  Similarity=0.477  Sum_probs=33.2

Q ss_pred             EEeeccccCCCCCCceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          64 CIEEQDTEGDGSDDNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        64 ~It~edL~~G~~~~~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      +|..+++.-........-||+ |.-.-.|.-..         .++     |.+|++|+||||.|+|.
T Consensus         7 ev~leD~~~dee~~~~~ypCp-CGd~F~it~~d---------Le~-----ge~V~~C~sCSL~ikVi   58 (70)
T d1wgea1           7 EVEIEDFQYDEDSETYFYPCP-CGDNFAITKED---------LEN-----GEDVATCPSCSLIIKVI   58 (70)
T ss_dssp             EEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHH---------HHT-----TCCEEECTTTCCEEEEE
T ss_pred             EEEeeeeeEeCCCCEEEeCCC-CCCeEEECHHH---------HhC-----CCeEEeCCCCceEEEEE
Confidence            345555543222345788999 98655554311         222     47899999999999984

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00014  Score=47.61  Aligned_cols=39  Identities=21%  Similarity=0.509  Sum_probs=27.8

Q ss_pred             CceEEECCCCCceEEEEecCCcceeeccccccCCCCCccEEEEcCCceeeEEEe
Q psy7115          77 DNILIACDTCSLLLEITARCGAEFCIEEQDTKGDSSEGNILIACDTCSLLLEIT  130 (132)
Q Consensus        77 ~~~vv~C~sCSL~ikV~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (132)
                      ....-+|+ |.-...|.-..         .++     |.+|++|++|||.|+|.
T Consensus        19 ~~~~ypCr-CGd~F~it~~d---------Le~-----ge~v~~C~sCSL~IrVi   57 (82)
T d1ywsa1          19 QMFTYPCP-CGDRFQIYLDD---------MFE-----GEKVAVCPSCSLMIDVV   57 (82)
T ss_dssp             TEEEECCS-SSSCEEEEHHH---------HHT-----TCCEEEETTTTEEEEEE
T ss_pred             CEEEeccc-cCCeEEEcHHH---------HhC-----CCeEEeCCCCceEEEEE
Confidence            35678999 98765554321         222     46889999999999985

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=97.00  E-value=3.2e-05  Score=50.05  Aligned_cols=24  Identities=17%  Similarity=0.302  Sum_probs=21.9

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHH
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQ   24 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~   24 (132)
                      +|++|++||++|+||.+|..||..
T Consensus        51 ~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          51 LMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHCCHHHHHHHccC
Confidence            489999999999999999999854

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.03  Score=36.05  Aligned_cols=22  Identities=14%  Similarity=0.339  Sum_probs=16.4

Q ss_pred             ChhhHHHHHHhcCChhHHHHHHHHh
Q psy7115           1 MFLKINEAWNILKDEKERKLYESQL   25 (132)
Q Consensus         1 kF~~I~eAyevLsdp~~R~~YD~~l   25 (132)
                      +|+.|++||++|++   |+.||+..
T Consensus        59 ~f~~i~~Ay~~L~~---~~~~d~~~   80 (88)
T d1iura_          59 VFKHLQNEINRLEK---QAFLDQNA   80 (88)
T ss_dssp             HHHHHHHHHHHHHH---HTTCSSSS
T ss_pred             HHHHHHHHHHHHHH---HHHhhccc
Confidence            49999999999974   45555443