Psyllid ID: psy7142

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------131
Protein Sequence
MSAAKRIRIASVDSTSVHPRQLDWNKCCLCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKATLLSRNAMWHRSCRLRFTSTRIRRLEKRKSSLPAPPSPPPAPQISTTFTRSSSTTPKDLKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLTAKSKPTTQNVAESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVRDSRNSRTRREQGAPLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDLGSTRIPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHAKSGISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQLTLEDEE
Secondary Structure (PSIPRED)
cccccEEEEEEcccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEccccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccEEEEEEccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHHccccccHHHccccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEEcHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHccccccEEEcccccccccHHHHHHccccHHHHHHHHHHHHHHccccEEEEEEEcEEEEEccccccEEccccccccccccHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHEEEEEccccccccccccccEEEEEEccccccccccccccccccHcHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHccccccccccccccEEEEEEEccccccccccccEEEEEcccccccEEEEEEcccccHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcHHHHHHcccccEEEEEEccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEccccHHHHccccHHHHHHHHHHHccccccccccccHHEEHHHHHHHcHHHHHHHcccccccccccccccEEEEEEHHHHHccHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHHHHHHcccEcccHHcccEEEEEEEEccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEccccccccEEEEEEHHHccccccccccccEEEcHHHccHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccEEEEcHHHHHEcccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHcccccEEEEcccccccHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEccEEEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccccccEEEEEccccccEEEEEHHHHHHHHcHHHHHHHHHHHHHcccccHHHHcccccHHHHHHHHccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccEEEEcccccccHHHHHHHHHHcccccccccccccHHHcccccHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
msaakririasvdstsvhprqldwnkcclcqldtneeltsptnnkdkkrvDESYKSLSETLMALKyyddlppnldldllnegqglKATLLSRNAMWHRSCRLRFTSTRIRRLEkrksslpappspppapqisttftrsssttpkdlKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSltakskpttqnvaesEHLCSVMAFEYIAQLIRDKlhsngaqyvfkmPSLISAYKRNLEILLgreassqeVHSTRLRQRILCtfpqlqahksgrEYILVQTGTNVHQDFisevedvtdgdaaSYFKLTRSLRREIAKVScsfsgsfegecqeasvpPVLIAVLNLLLygstnnqtdtkqpVLTIAQLLILNFRVRVrdsrnsrtrreqgaplpMYLALSAysnnrssksvddmHQLGLSISYKRLHKTISGLCQLqserakeeglvcpsnlkkdlftigaydnidhnptsttskesfhgtSISIFQCRaennlgtkrefhstfndvdlgstripellysfstvkpkflhnknpplpkctEELANDLtkgltmdsVYTKELHWLKHADEIvntetngsecldvipdnnnqsldVSWAAFHAsrhhaksgissestVDSILKVTHVKKARMFHEFTALTLYSLLNEaynsnspqvtLEEWVKEQCVkskthrhlhheqypafQNEFMSNVNKLKDTftaagnpfqetsDELIsldsrvvsDEECVKMLRDSEARGILLYKTFVSErlsegsktnifaplksnKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRkldmenffkhenstyppslssnghlrhalgkadilQPLEKLMNLerntfsdrcdvvvcdgaalihatpprnsrtfegycsQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLRevrgksqrlqvtpnspvprnwseflknnhnKEELFSLLGKYLIENVKNVRVVTNIGTkyassesntsflegldcsafeeaDGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLgteksvalrgfhafsgcdtvstfafhgkqtaWKTWNSCDYVTSAFVAiskplpelgDELLQDLEQFVVYMYSksstgmtldkTRQHLSqyeekpfdrlpptsEALRQHALRAAYQgghiwgqcmdplaeipspdgwgwikedsewvanwtclptiwkgcrdlvkckcktgcsstsncsckrsnvdcvpvlcsncngcsnmsqltledee
Flexible Loop (DISEMBL)
msaakririasvdstsvhprqldWNKCCLCQLDtneeltsptnnkdkkrvdeSYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKATllsrnamwhrscrlrftstriRRLEkrksslpappspppapqisttftrsssttpkdLKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLTAKSKPTTQNVAESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTFpqlqahksGREYILVQTGTNVHQDFIsevedvtdgdAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTnnqtdtkqPVLTIAQLLIlnfrvrvrdsrnsrtrreqgaplpmYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHstfndvdlgstRIPELLYSFStvkpkflhnknpplpkCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHaksgissestvdSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLrdseargiLLYKTFVserlsegsktnifaplksnkiriFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALihatpprnsrtfeGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSlrevrgksqrlqvtpnspvprnWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGtkyassesntsfLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEekpfdrlppTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTgcsstsncsckrsnVDCVPVLCSncngcsnmsqltledee
Low Complexity Region (SEG)
MSAAKRIRIASVDSTSVHPRQLDWNKCCLCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYYddlppnldldllnEGQGLKATLLSRNAMWHRSCRLRFTSTRIRRLEKRKsslpappspppapQIsttftrsssttPKDLKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLTAKSKPTTQNVAESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFrvrvrdsrnsrtrrEQGAPLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDLGSTRIPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHAKSGISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKplpelgdellqdleqFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQLTLEDEE
Disordered region (IsUnstruct)
*****************HPRQLDWNKCCLCQLD**************************TLMALKYYDDLPPNLDLDLLNEGQGLKATLLSRNAMWHRSCRLRFTSTR*************************************LKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLT**********AESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREA****VHSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRV*******************L******************QLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNID***********FHGTSISIFQCRAENNLGTKREFHSTFNDVDLGSTRIPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHAS************TVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTA***********LISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFN************VHSLQNDVHLFQRCLTVSMNRKLDMENFF*****************RHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSL*************************WSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYS***********************************HALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCS***********
Disordered Region (DISOPRED)
**********SVDSTSVHPRQLDWNKCCLCQLDTN****************ESYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKATLLSRNAMWHRSCRLRFT*****************************************KQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFN***********************CSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEI*************TRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTN*******PVLTIAQLLILNFRVRVR***********GAPLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRA***************************LYSFSTVKPKFLHNKNPPL**CTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHH**SGISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKI*******************LQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPD**********************PVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYE*******PPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNG*************
Disordered Region (DISEMBL)
MSAAKRIRIASVDSTSVHPRQLDWNKCCLCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKATLLSRNAMWHRSCRLRFTSTRIRRLE***************PQISTTFTRSSSTTPKDLKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLT**********AESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVR**********QGAPLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPT*********GTSISIFQCRAENNLGTKREFHSTFNDVDLGSTRIPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFH*************STVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCK***********KRSNVDCVPVLCSNCNGCSNMSQLTLEDEE
Disordered Region (DISPRO)
*******R*ASVDSTSVHPRQLDWNKCCLCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKATLLSRNAMWHRSCRLRFTSTRIRRLEKRKS***********PQISTTFTRSSSTTPKDLKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLTAKS*PTTQNVAESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVRD***********APLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPT**TS*ESFHGTSISIFQCRAE**********STF******STRIPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHAKSGISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKS*THRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSN**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSAAKRIRIASVDSTSVHPRQLDWNKCCLCQLDTNEELTSPTNNKDKKRVDESYKSLSETLMALKYYDDLPPNLDLDLLNEGQGLKATLLSRNAMWHRSCRLRFTSTRIRRLEKRKSSLPAPPSPPPAPQISTTFTRSSSTTPKDLKQYVCFLCTKTDVAEKLTNVMTLEAADTMRKWAWELKKFELAGLLQGDLIALEGKYHKLCHTQLFNEYMRSLTAKSKPTTQNVAESEHLCSVMAFEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTFPQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSGSFEGECQEASVPPVLIAVLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVRDSRNSRTRREQGAPLPMYLALSAYSNNRSSKSVDDMHQLGLSISYKRLHKTISGLCQLQSERAKEEGLVCPSNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDLGSTRIPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLTKGLTMDSVYTKELHWLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHAKSGISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQLTLEDEE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1309
260804463	1477	hypothetical protein BRAFLDRAFT_76362 [B	0.430	0.381	0.383	1e-107
340385049	842	PREDICTED: hypothetical protein LOC10063	0.440	0.685	0.377	1e-102
443716490	1395	hypothetical protein CAPTEDRAFT_216620 [	0.433	0.407	0.357	3e-89
390343919	556	PREDICTED: uncharacterized protein LOC10	0.385	0.906	0.356	2e-77
443685664	636	hypothetical protein CAPTEDRAFT_223408 [	0.413	0.850	0.298	3e-67
260822613	1209	hypothetical protein BRAFLDRAFT_72537 [B	0.334	0.362	0.333	3e-65
156398132	1142	predicted protein [Nematostella vectensi	0.388	0.444	0.313	1e-61
156392279	1554	predicted protein [Nematostella vectensi	0.329	0.277	0.325	3e-58
156381299	1141	predicted protein [Nematostella vectensi	0.303	0.347	0.338	2e-54
291238911	1049	PREDICTED: hypothetical protein [Saccogl	0.359	0.448	0.284	4e-46

>gi|260804463|ref|XP_002597107.1| hypothetical protein BRAFLDRAFT_76362 [Branchiostoma floridae] gi|229282370|gb|EEN53119.1| hypothetical protein BRAFLDRAFT_76362 [Branchiostoma floridae]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/607 (38%), Positives = 335/607 (55%), Gaps = 44/607 (7%)

Query: 709  HHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEAR 768
            HHEQ  + Q  F S V  L       GNPF+E S +L+ L SR + D+E V+ L   + +
Sbjct: 900  HHEQTRSTQRLFASQVKCLVAVIENMGNPFEEESQDLLRLHSRDIMDKESVECLTSIQLK 959

Query: 769  GILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEMVHSLQNDVHLFQRC 828
            G   Y  FV+ERL   +K  I A +  NK+ IFN+   K       +  L+N+  LF R 
Sbjct: 960  GQEQYNAFVNERLKTNAKP-ISACITRNKMVIFNKQSTKTKGADRKISLLRNESSLFARL 1018

Query: 829  LTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGK-ADILQPLEKLMNLERNTFSDR 887
                  R+ D++NFF HEN  +PPSLSS G+LR  LGK +D++  LE   +  R+   D 
Sbjct: 1019 YISCQTREGDLDNFFSHENHPFPPSLSSYGNLR--LGKKSDLMTCLETATS-TRHVRPD- 1074

Query: 888  CDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLK 947
             D  + DGA +++   P   +TF  Y ++ F   I    E     R+D+VWD Y  +SLK
Sbjct: 1075 SDASILDGAVIVNMLRPGVCKTFGEYATKIFVPYIQR--EQEQTRRVDIVWDQYIDNSLK 1132

Query: 948  NSLREVR--GKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTN 1005
               R+ R  G+SQR +V   SP+P NW +FL++N NK+ELF  L   L+           
Sbjct: 1133 AQTRDKRAVGQSQRRRVEETSPIPNNWQQFLRSNDNKKELFDHLNATLL----------- 1181

Query: 1006 IGTKYASSESNTSFLEG------------LDCSAFEEADGRIILHIRDAVLQGAKKVLVR 1053
               K AS+E N    +G            +D    EEAD RI++H+ DA  +G +++LVR
Sbjct: 1182 ---KSASTEQNLVVTDGPNVRCVPPRDTEIDPCNHEEADSRIMVHVADAANEGFRRILVR 1238

Query: 1054 TVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHA 1113
            +VDTDV VLA++   +L +    EL+++   GK  R+ AAHEI+  LG +KS+AL  FHA
Sbjct: 1239 SVDTDVVVLAVATVQQLASI---ELWIAFGTGKDFRYIAAHEISQTLGPQKSLALPVFHA 1295

Query: 1114 FSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSK 1173
            F+GCDTVS F+  GK+TAWK W + D  T+ F  +      + DE    LE F + ++ +
Sbjct: 1296 FTGCDTVSQFSHIGKKTAWKVWETHDEFTATFYDLHSSPHHISDEAETALEYFTILLFDR 1355

Query: 1174 SSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSP 1233
            +ST  ++++ R+HL   + +P   LPPT  AL QH  RA  QGGH WG+   P  ++PSP
Sbjct: 1356 TSTCSSINQLRKHLFTRKNRPMSSLPPTQAALHQHMRRAILQGGHHWGRNTTPCRQLPSP 1415

Query: 1234 DGWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSN 1293
              WGW  E+ EW   WT LP   + C +L+KCKC+T C++   C C ++ + C  V C  
Sbjct: 1416 AEWGWTGEE-EWRPLWTTLPEAVESCPELLKCKCRTRCTA---CKCAQAQLKCT-VYCGC 1470

Query: 1294 CNGCSNM 1300
               C+N+
Sbjct: 1471 RGECTNV 1477

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|340385049|ref|XP_003391023.1| PREDICTED: hypothetical protein LOC100633611, partial [Amphimedon queenslandica]

 Score =  381 bits (979), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 342/601 (56%), Gaps = 24/601 (3%)

Query: 703  KTHRH----LHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEEC 758
            K H+H    LHH+Q  + Q  F  +V  L +      NPF E S +L+ LD++ + DE  
Sbjct: 255  KWHKHSSETLHHDQTKSTQLRFSQHVKSLVEVIEDMENPFLEESKDLLRLDTKDIMDEVV 314

Query: 759  VKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQM-KKKRNTDKEMVHS 817
            V  +  +E +G   Y TFV+ RL+    T +  P+K NK+ +F++   K+++     V S
Sbjct: 315  VSSICHAEEKGKEQYHTFVTNRLAH-RITPLSDPIKKNKLPLFSRPPTKEKSKSSLKVSS 373

Query: 818  LQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLM 877
            L++DV LF R      +R  D+++FF HEN + PPSLSS G LRH   KAD+L  LE   
Sbjct: 374  LKSDVSLFSRLYIACQSRDGDLDDFFCHENQSAPPSLSSFGKLRHG-NKADLLNCLENC- 431

Query: 878  NLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVV 937
             +E        +V + DGAA+++   P  ++TF  Y  + F   I   ++  +  R+D+V
Sbjct: 432  -VESAATQPDAEVTILDGAAVVNFLKPLAAKTFNDYAIKVFLPYIEKQLQHVT--RLDIV 488

Query: 938  WDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIE-N 996
            WD Y  +SLK   R  RGK  R +V  ++ +P NW +FL+N+ NK ELF+ L  ++    
Sbjct: 489  WDRYIANSLKCHTRSNRGKGIRRRVEASANIPSNWHQFLRNDMNKTELFAFLITHIRHLQ 548

Query: 997  VKNVRVVTNIGTKYASSES-NTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTV 1055
            + N +V+T  G +     S +TS L   D    EEAD RIILH+ DA+ +G  K+L+RTV
Sbjct: 549  LTNKQVITTNGLEVLCIPSQDTSHLAPSD---HEEADTRIILHLSDAINKGFNKILIRTV 605

Query: 1056 DTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFS 1115
            DTDV VL ++   ++K   +E+L+++   GK  R+   H+I  ++G  K  AL  FHA++
Sbjct: 606  DTDVFVLLLAAAAKMK---IEKLWIAFGTGKNFRYIPVHDIVTSIGAVKCRALPMFHAYT 662

Query: 1116 GCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSS 1175
            GCDTVS+F+  GK++AW TW   D VT  F+A+S    ++ D  L+ LE+F + +Y ++S
Sbjct: 663  GCDTVSSFSTRGKKSAWDTWKVYDKVTETFIALSTGPAQISDGDLEVLERFTILLYDRTS 722

Query: 1176 TGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDG 1235
              + +++ R+HL   + +  D +PPT  AL QH  RA YQGGH WG+       +PSP+ 
Sbjct: 723  KAICINEARKHLFSKKGRSMDAIPPTKAALIQHIRRAVYQGGHCWGKVYQAAMNLPSPEN 782

Query: 1236 WGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCN 1295
            WGW  + ++W   WT LP      R+L+ C CK GC     C CKR+ + C   LC +C 
Sbjct: 783  WGWT-DTNDWKPLWTTLPEAGASSRELLCCNCKKGCRGL--CKCKRAALKCT-ALC-HCG 837

Query: 1296 G 1296
            G
Sbjct: 838  G 838

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|443716490|gb|ELU07992.1| hypothetical protein CAPTEDRAFT_216620 [Capitella teleta]

 Score =  337 bits (863), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 212/593 (35%), Positives = 306/593 (51%), Gaps = 25/593 (4%)

Query: 709  HHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSR-VVSDEECVKMLRDSEA 767
            HHEQ PA Q +F + V  L       GNPF E +++L  LD++ +V   E VK +     
Sbjct: 824  HHEQRPAVQKKFATEVKALTSVLMEIGNPFNEDTEDLFVLDTKEIVVLSETVKNI---GT 880

Query: 768  RGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQMKKKRNTDKEM-VHSLQNDVHLFQ 826
             G   Y TFV ER  E +K  I   +  NK+++F++      +  +M +  L+ D  LF 
Sbjct: 881  LGKQQYLTFVKERFEERTKA-ITDVIPKNKLKLFSRPAAPTPSKHKMQLDMLKRDCGLFS 939

Query: 827  RCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSD 886
            R       R  +++ FF HE    PPSL+  G +R A  KADIL  + +    + +T   
Sbjct: 940  RLYVACQIRDGNLDEFFAHEIQASPPSLAQGGQMR-ATSKADILTCIYQN---DVSTCYP 995

Query: 887  RCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSL 946
              DV++ DGAA++H   P  S TF+ Y    F   I+  I +    R+D+VWD+Y P SL
Sbjct: 996  TVDVLILDGAAVVHMLNPGPSTTFQQYVDCIFLPYIVNKISNIK--RLDIVWDVYDPHSL 1053

Query: 947  KNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYL--IENVKNVRVVT 1004
            K S RE RG   R +V   S +P+ W EFL N+ NK +LF LL   +  +  V    +  
Sbjct: 1054 KASTRERRGHGVRRRVVLKSRIPKMWKEFLCNDENKSDLFHLLSHAVNSLAPVPGKEIYA 1113

Query: 1005 NIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAI 1064
             +G    ++  N S    +     EEAD R+ILH+ DAV +G K  ++RTVDTDV ++A 
Sbjct: 1114 TLGADVLTTSENIS---AISPCTHEEADTRVILHLHDAVQKGLKTAMIRTVDTDVVIIAA 1170

Query: 1065 SFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFA 1124
            S +  +K     +L+++   G+  R    HEI   LG  +  +L  FHA +GCDTVS F 
Sbjct: 1171 SAFTTIKP---AKLWIAFGSGRNFRHLPVHEIVNCLGFSRCSSLPLFHAMTGCDTVSAFY 1227

Query: 1125 FHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTR 1184
              GK+TAW+TW S   VT AF         +    +  LE+FV+ +Y KSS    +++ R
Sbjct: 1228 GRGKRTAWETWQSYPEVTEAFQKCVSS-DTVSKTCMSLLERFVILLYDKSSKATDVNEAR 1286

Query: 1185 QHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSE 1244
            +H+   + +  + +PPT  AL QH  RA  Q   IW    + +     P  WGW+KE S+
Sbjct: 1287 KHIFTQKARSLENIPPTQAALEQHVKRAVLQA-KIWNNSTEAVPSAIDPSKWGWVKEGSQ 1345

Query: 1245 WVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCNGC 1297
            W   WT LP   K C +L+ C CK GC+    C CK++ + C   LC    GC
Sbjct: 1346 WKPLWTSLPEAAKCCYELIHCGCKKGCN--GRCKCKKAGLKCTS-LCVCGGGC 1395

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|390343919|ref|XP_003725994.1| PREDICTED: uncharacterized protein LOC100891484 [Strongylocentrotus purpuratus]

 Score =  298 bits (762), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 188/528 (35%), Positives = 278/528 (52%), Gaps = 24/528 (4%)

Query: 726  KLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGS 785
            +L  T    G+PF E   EL+ L SR  +D+  V+ ++  EA G   Y+T+  E L E S
Sbjct: 18   QLMKTINEYGSPFLEDHSELLVLYSRECADKSVVETVQHIEALGSDQYQTYKREVLIEKS 77

Query: 786  KTNIFAPLKSNKIRIFNQ-MKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFK 844
            KT I AP+K N + +F   +K K N   E + SL+NDV LF      +  R  D   FF 
Sbjct: 78   KT-IHAPIKKNSLPLFKTPVKAKGNRKTEKIASLRNDVSLFGHMYIANQLRDGDPAVFFS 136

Query: 845  HENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPP 904
            HEN  YPPS+S++  LR    K+ +L  L      E      + D  + DGAAL+H  P 
Sbjct: 137  HENQAYPPSISNSRKLRLTSSKSKLLTCLNTNGQGEPPA---QVDCKIFDGAALVHGLPA 193

Query: 905  RNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTP 964
             +  TFE Y    F+  +   ++     R+D+VWD Y   S+K S R+ RG   R  V  
Sbjct: 194  TSVSTFEDYARTVFKPVLNRELQGVR--RLDLVWDRYLACSIKESTRQKRGSGVRTNVAS 251

Query: 965  NSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLD 1024
             + +P  W +FL+++ NKEELF+ L        + V        K     S TS +   D
Sbjct: 252  KTKMPVKWKDFLQDSTNKEELFAFL-------TQTVAAGECPKGKELYVTSGTSVITRGD 304

Query: 1025 CSAFE-----EADGRIILHIRDAVLQGAKKVLVRTVDTDV-AVLAISFYFELKNYGLEEL 1078
            C   E     EAD RII+H++ A  +G+KK+++RTVDTD+ A+L       +  Y   ++
Sbjct: 305  CEPMEDCTHEEADTRIIVHLQHAAERGSKKIVIRTVDTDIIAILVGQLPSLIVEYPDIDI 364

Query: 1079 FVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSC 1138
            +V+   GK    +  + I  NLG +KS+AL  FHA++GCDT S F   GK++AW+ W S 
Sbjct: 365  WVAFGMGKNFCHYNINNICRNLGEDKSLALPLFHAYTGCDTTSCFLAKGKKSAWRVWKSY 424

Query: 1139 DYVTSAFVA-ISKPL--PELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPF 1195
              VT AF+  +  P    ++  E  + LE+F V +Y  +S  +++++ R+ L   +++  
Sbjct: 425  PEVTQAFLHFVDHPFRAVDVSCEHFRHLERFTVLLYDITSNLLSVNEARRELFCKKKRSL 484

Query: 1196 DRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDS 1243
            + +PPT +AL QH  R  YQGG IW  C      +P P+GWGW  ED+
Sbjct: 485  ENIPPTQDALLQHIKRVLYQGG-IWTTCRQAQPSVPPPEGWGWTMEDN 531

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|443685664|gb|ELT89202.1| hypothetical protein CAPTEDRAFT_223408 [Capitella teleta]

 Score =  264 bits (674), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 180/604 (29%), Positives = 305/604 (50%), Gaps = 63/604 (10%)

Query: 702  SKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKM 761
            SK     HHEQYP +Q +F  +V  L   F   GNPF E S +L+ LD  ++  ++ +  
Sbjct: 88   SKDQSTRHHEQYPQYQKKFKEDVLNLIQAFEDLGNPFLEESADLLDLDQSIMMPDDVINN 147

Query: 762  LRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIF-NQMKKKRNTDKEMVHSLQN 820
            +R   + G  LY  F++ER+ +  K      LK   +R+F + +K K  + K  + +L++
Sbjct: 148  VRKISSFGRELYNKFLNERVFD-QKVPFNETLKEVNLRLFKDVLKSKSKSTKATISALKD 206

Query: 821  DVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLE 880
            +       L  +   +   ++ F HE+S +PP+L+ +G + H+  K+++L  L     ++
Sbjct: 207  EHSKASHLLLAAQGGRPISDDLFGHESSKFPPALTKDGVIYHS-TKSEMLDCL----CVQ 261

Query: 881  RNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDL 940
                +      + DGA ++    P+NS TF  YC+  F + ++ M+++   DR+D+V+D+
Sbjct: 262  EKQVAPDTTCALLDGAVVVQMLRPKNSTTFGDYCADVFLQYVLTMLKT--KDRVDIVFDV 319

Query: 941  YFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYL--IENVK 998
            Y  +SLK+ +R+ RG   R +VT ++ +P NW+ FL+ + NK+ELF  + +Y+  +    
Sbjct: 320  YKDNSLKSGIRQQRGTGIRRRVTLSTKIPGNWASFLRVSQNKQELFIEISQYMKTVTLPA 379

Query: 999  NVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTD 1058
              R+V  +  +       +  L  L   + EEAD RI+LH+ +AV             T 
Sbjct: 380  GKRIVCTLLEECLVVPEGSLNLSSLAPCSHEEADTRILLHLANAV-----------ACTT 428

Query: 1059 VAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCD 1118
            V VLA+                                A  +  +++ +L  FHA SGCD
Sbjct: 429  VVVLAVR-------------------------------ATQILKDQTPSLLAFHALSGCD 457

Query: 1119 TVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLP-ELGDELLQDLEQFVVYMYSKSSTG 1177
            TVS+F   GK++AW+ W +C  +TSA + +S P+  +    +L  +E FV  +Y   S  
Sbjct: 458  TVSSFFGKGKRSAWQAWQACPDLTSALLELSSPVSHDSVKRVLPIIETFVTRLYGVESVD 517

Query: 1178 MTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCM--DPLAEIPSPDG 1235
            + ++  R+ L   + K F ++PP+S+AL+ H LRA +Q   +WG  +  DPL  +PSP+ 
Sbjct: 518  L-VNAARKTLFLNKGKQFVQIPPSSDALQLHLLRAVHQSAFVWGGLLIRDPL--VPSPEE 574

Query: 1236 WGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNCN 1295
            WGW +  S +V ++  LP +     +L  C CK+ C     C C  +   C+  LC  C 
Sbjct: 575  WGWQRSGSAFVPHYISLPPLSSSLPELSFCSCKSVCKRP--CKCIVNEQVCIS-LCF-CR 630

Query: 1296 GCSN 1299
            G  N
Sbjct: 631  GQCN 634

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|260822613|ref|XP_002606696.1| hypothetical protein BRAFLDRAFT_72537 [Branchiostoma floridae] gi|229292040|gb|EEN62706.1| hypothetical protein BRAFLDRAFT_72537 [Branchiostoma floridae]

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/456 (33%), Positives = 242/456 (53%), Gaps = 18/456 (3%)

Query: 686  SPQVT--LEEWVKEQCVKSKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSD 743
             PQV+  +E++      K       HH Q    Q  FM NV KL        NPFQE + 
Sbjct: 748  GPQVSHLVEQYEAASEAKEAVEPTSHHNQTSQAQRVFMENVKKLTQVLKELSNPFQEETR 807

Query: 744  ELISLDSRVVSDEECVKMLRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFNQ 803
            +L+SLD++ ++    V++L     RG   ++ F+ E L     T  + P+K N +  F Q
Sbjct: 808  DLLSLDTKDIAHPSVVELLSTHYERGRTSFQQFM-EGLQNREVTTFYDPIKKNMVDFFRQ 866

Query: 804  MKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHA 863
                 +  K  V  L+ D  LF +      +R+ D++ FF+HEN  +P SLS  G L + 
Sbjct: 867  EPASTDASKRKV--LKEDCQLFSKLFISCQSRECDLQEFFRHENQQFPASLSEGGKL-YT 923

Query: 864  LGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIM 923
              K+ +   LE  + +       + D ++ DG+AL++   PR S+TFE Y   +    ++
Sbjct: 924  SQKSQLAAILESKVTIP--DVEPQADTIIIDGSALVNTLLPRTSKTFEDYAILD----VL 977

Query: 924  GMIESCSAD--RIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHN 981
             ++++ S    R D+V+D+Y P SLK   R  RG   + +VT    +P NW  FL+ + N
Sbjct: 978  PIVQAYSTKYKRTDIVFDVYKPSSLKGETRLKRGHGAKRRVTNRGRIPSNWRNFLRESDN 1037

Query: 982  KEELFSLLGKYLIE-NVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIR 1040
            K ELF  L   + + +  N+ +VT       ++ + T  LEG+   + EEAD RI +H R
Sbjct: 1038 KTELFRFLADKITQMSTPNLVIVTR---DEDAASNRTISLEGIAPCSQEEADTRIFVHAR 1094

Query: 1041 DAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNL 1100
             AV +G+K ++V+  DTD+ V+A+S    ++ +GL +L+V+   G   R+F  H++  ++
Sbjct: 1095 HAVQEGSKVLMVKASDTDILVIALSVLPLIQQFGLLQLWVAFGQGYNLRWFPIHDLYFSI 1154

Query: 1101 GTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWN 1136
            G EKS  +  FHAF+GCD VS F   GK++AW+TWN
Sbjct: 1155 GMEKSKGILFFHAFTGCDVVSGFRGKGKKSAWQTWN 1190

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156398132|ref|XP_001638043.1| predicted protein [Nematostella vectensis] gi|156225160|gb|EDO45980.1| predicted protein [Nematostella vectensis]

 Score =  245 bits (626), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 187/596 (31%), Positives = 270/596 (45%), Gaps = 88/596 (14%)

Query: 702  SKTHRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKM 761
            S+T    +HE   + Q  F   VN L D     GNPF +   EL++LDSR   D E  + 
Sbjct: 622  SETGDRTNHETGLSSQKTFKIQVNNLIDVIRKMGNPFLDNFPELVTLDSRDCMDNEVAET 681

Query: 762  LRDSEARGILLYKTFVSERLSEGSKTNIFAPLKSNKIRIF-NQMKKKRNTDKEMVHSLQN 820
            + + +A G   Y +F+ + + + +   I   LK NK+ +F  Q    ++   + +  LQN
Sbjct: 682  IVNLDALGKSQYSSFLKDVIKDRT-VAIGKSLKQNKLPLFRKQASHNKSKQSKTISLLQN 740

Query: 821  DVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLE 880
            +V LF +      +R  D+  FF HE   +PPSLS  G LR    K+D       L+NL+
Sbjct: 741  NVALFAQMYIAMQSRDADLREFFSHEVQPFPPSLSEFGSLRLPTAKSD-------LLNLK 793

Query: 881  RNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDL 940
              T   R       G  L         R  EG                    +I   W  
Sbjct: 794  EATREKR-------GTGL--------RRKVEG------------------GTKIPPKWME 820

Query: 941  YFPDSLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNV 1000
            +        LR+ R K +  Q          W    K              Y+   V   
Sbjct: 821  F--------LRDPRNKQKLFQFLSVKVAEFPWFTVRKE------------VYITSGVS-- 858

Query: 1001 RVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAV-LQGAKKVLVRTVDTDV 1059
              VT+IG++ A            DCS  EEAD RI++HIR AV    AK+V+VRTVDTD+
Sbjct: 859  --VTSIGSEAAMP----------DCS-HEEADTRIVVHIRHAVETSHAKEVIVRTVDTDI 905

Query: 1060 AVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDT 1119
             V+    + +LK+     L+V+   G+  R+ + + I   LG  + +AL  FHA SGCDT
Sbjct: 906  VVILAGKFHQLKSQPELHLWVAYGMGRHFRYLSINTICEGLGEARFIALPVFHALSGCDT 965

Query: 1120 VSTFAFHGKQTAWKTWNSCDYVTSA--FVAISKPLPE--LGDELLQDLEQFVVYMYSKSS 1175
             S+F   GK TAW+TW+    VT    F+A++ P  +  L  E  + +E+F V +Y K S
Sbjct: 966  TSSFYGKGKLTAWQTWDIYKDVTPTLQFLALN-PFHQLTLDSEHFKRIERFTVILYDKLS 1024

Query: 1176 TGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDG 1235
                ++  R  L     +  D+LPPT + L QH  R  YQ G IW         +PSPD 
Sbjct: 1025 PFACINDARMELFCKNNRAMDKLPPTKDTLLQHVKRCIYQAG-IWTSSEISQPVLPSPDQ 1083

Query: 1236 WGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLC 1291
            + WIKE   WV  W  +P + K C +L KC  K  C   + C C +++++C  +LC
Sbjct: 1084 FAWIKEAGTWVPGWITIPEVSKACSELTKCNSKGVC---TRCKCIKAHLECT-LLC 1135

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|156392279|ref|XP_001635976.1| predicted protein [Nematostella vectensis] gi|156223075|gb|EDO43913.1| predicted protein [Nematostella vectensis]

 Score =  234 bits (597), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 151/464 (32%), Positives = 240/464 (51%), Gaps = 33/464 (7%)

Query: 709  HHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLRDSEAR 768
            HHE   ++Q  F  +V  L +     GNPF+++S ++  LD++VV+ EE V  +R  E  
Sbjct: 804  HHEDEVSYQRAFQKDVKSLTNVLEEYGNPFEDSSRDISVLDTKVVAGEEGVIRMRMMEEL 863

Query: 769  GILLYKTFVSERLSEGSKTNIFAPLKSNKIRIFN--QMKKKRNTDKEMVHSLQNDVHLFQ 826
            G   ++TF+SERL E  K  +  P+  NK+  F     K+K++  ++ + S+++D  LF 
Sbjct: 864  GKKQWETFISERLVEQIKP-LKDPISRNKLAFFETSSKKRKKSKGQQQLSSMKSDCSLFS 922

Query: 827  RCLTVSMNRKLDMENFFKHENSTYPPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSD 886
            R       R  ++E FF+HEN   PPS                        +    T   
Sbjct: 923  RLFIACQTRDGNLEEFFEHENQACPPS------------------------DKPTRTAPA 958

Query: 887  RCDVVVCDGAALIHATPPR-NSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDS 945
              DV++ DGA L +   P    +TF  Y ++ F   I   ++     RID+VWD Y   S
Sbjct: 959  NPDVIIFDGAVLENMIKPSPEDKTFSDYTARRFVPYIEAQLQQTK--RIDLVWDEYVESS 1016

Query: 946  LKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTN 1005
            LK + RE RG   R +V   + +PRNW  FL+++ NK++LF LL   +       + + +
Sbjct: 1017 LKVTTREARGHGVRQRVASGNKLPRNWRCFLRDSQNKQDLFQLLANCVASINSGEKCIVS 1076

Query: 1006 IGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAIS 1065
               +   S      ++ +   + EEAD R+ LH+  A+  G+ +V++RTVDTDV V+A++
Sbjct: 1077 SFRQGTLSSIPIEEVKRITPCSHEEADTRMFLHVAHALSSGSTRVVLRTVDTDVLVIAVA 1136

Query: 1066 FYFELK--NYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTF 1123
            ++ +L+  +    EL+++   G   R+ AAHE+A +  T    A   FHAF+GCDTVS F
Sbjct: 1137 YFQKLQMLSQASVELWLAFGTGAYLRYIAAHEVAGSF-TGNVAAFLTFHAFTGCDTVSCF 1195

Query: 1124 AFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFV 1167
               GKQ A +TW+    VT  F A++    E+ DE +  LE++V
Sbjct: 1196 YGKGKQKALETWHIYPEVTPVFAAMASAPSEMLDEWMSILERYV 1239

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|156381299|ref|XP_001632203.1| predicted protein [Nematostella vectensis] gi|156219255|gb|EDO40140.1| predicted protein [Nematostella vectensis]

 Score =  221 bits (564), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/425 (33%), Positives = 214/425 (50%), Gaps = 28/425 (6%)

Query: 879  LERNTFSDRCDVVVCDGAALIHATPPRNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVW 938
             ER +F+ R    +    A+ HA    N+ T +G     F+        S S        
Sbjct: 739  FERGSFTVRKFSRIFSAIAIDHAHEQNNAMTRDGDVDDFFRHENQACPPSQSNQG----- 793

Query: 939  DLYFPD--SLKNSLREVRGKSQRLQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIEN 996
            +L  P   S  ++ R  RG   R  ++P+ P+P NWS+FL+N+ NK +LF+ L       
Sbjct: 794  NLRLPQKKSELDTTRGNRGAGVRRCISPSCPIPSNWSDFLRNSENKTQLFNFLD------ 847

Query: 997  VKNVRVVTNIGTKYASSESNTSFLEGLDCS--AFEEADGRIILHIRDAVLQGAKKVLVRT 1054
                  +  I T Y  S   T   +  D S  + EEAD R+ILH++DA  QG  K+ VRT
Sbjct: 848  -----TMKQIITTYEKSVRCTVQRDTTDLSPCSHEEADSRVILHVKDAHDQGFTKIAVRT 902

Query: 1055 VDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAF 1114
            VDTDV VL+++    L      +L+V+ + G   R  AAH     L T  S  L  F  F
Sbjct: 903  VDTDVLVLSVAVLPLLPIQ--PKLWVAFDTGANFRCIAAH--MPFLQTLVSKCLERFRIF 958

Query: 1115 SGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKS 1174
                    F   GK+TA++TW     VT  F+A + P  E+ D  +  +E+F V +Y ++
Sbjct: 959  MPSQAAIQFKGKGKKTAFETWKLYPEVTDVFIAPTVP-EEVSDIHMATIERFTVLLYDRT 1017

Query: 1175 STGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPD 1234
            S+ +T+++ ++ L   + +P + LPP+  AL +H  RAAYQ GH WGQ +     +PSP+
Sbjct: 1018 SSKLTVNEAKKQLFAQKGRPLEALPPSKAALLEHTKRAAYQAGHCWGQSLARSPVLPSPE 1077

Query: 1235 GWGWIKEDSEWVANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDCVPVLCSNC 1294
             WGW   D +W   WT LP + + C++L++C CK G   T  CSC++  + C   LCS  
Sbjct: 1078 HWGWALSDGKWEPYWTALPDVTRVCQELIRCGCKKG--YTGRCSCQKVGLRCT-ALCSCD 1134

Query: 1295 NGCSN 1299
              C N
Sbjct: 1135 EECDN 1139

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|291238911|ref|XP_002739369.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 148/520 (28%), Positives = 239/520 (45%), Gaps = 49/520 (9%)

Query: 792  PLKSNKIRIFNQMKKKRNTDKE-MVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTY 850
            P+K+NK++ F+ M KK+  +       L+ D  LF R + ++  R L ME+   H     
Sbjct: 520  PIKTNKLKTFSNMCKKKEVNSSGRAIILKADRSLFGRIIVMAQGRNLQMEDILTHPLGPL 579

Query: 851  PPSLSSNGHLRHALGKADILQPLEKLMNLERNTFSDRCDVVVCDGAALIHATPPRNSRTF 910
            P +LS+   L     KA +   L+  + +      +   V+  DG  L+      +  TF
Sbjct: 580  PWALSTPEGLLRKTNKATLATGLQTNVTVAETLLENSASVI--DGMNLVQRVKG-DQITF 636

Query: 911  EGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQ--RLQVTPNSPV 968
                +       M + E   ++RIDVV+D Y  +S+KNS R +RG+     LQ    + +
Sbjct: 637  GNIANTVLS---MALREGSQSNRIDVVFDTYKENSIKNSERSLRGEETGYSLQSITATQI 693

Query: 969  PRNWSEFLKNNHNKEELFSLL--------------GKYLIENVKNVRVVTNIGTKYASSE 1014
             R W  FL   +NK  L + +               K L  NV ++         Y  + 
Sbjct: 694  VRQWRNFLTRVNNKSSLITFIVSEWRKEEYRERLQKKVLYANVNDI--------CYRITS 745

Query: 1015 SNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYG 1074
             ++  +  L C+  EEADGR++LH   A  +G + V++ + DTDV +++++FY ++    
Sbjct: 746  QSSEEVPDLQCTQ-EEADGRLLLHAAHATEEGYQAVVICSEDTDVFIMSLAFYDKIGASV 804

Query: 1075 LEELFVSLNYGKKQR--FFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAW 1132
             ++      YG + R       +++  +G +   AL G HAF+GCDTVS FA  GK +A 
Sbjct: 805  FQK------YGTRTRTKIIDIGKVSAAIGIDVCRALIGMHAFTGCDTVSAFAGKGKASAL 858

Query: 1133 KTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTLDKTRQHL--SQY 1190
            +   S       F+ + +    L  EL+  LE F   +Y   ++   ++  R HL  ++ 
Sbjct: 859  RFMTSNRETQDIFLQLGQEWT-LSQELMNKLEAFTCTLYGPKASSSKVNDLRYHLFCAKK 917

Query: 1191 EEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGWGWIKEDSE----WV 1246
             E    +LPP  + L +HA RA YQ G IW +C++   +IPSP G GW  E  E     V
Sbjct: 918  GEIESHQLPPCRDCLVKHAQRANYQAG-IWRRCLEQDPQIPSPIGKGWKIEKFEGTEQLV 976

Query: 1247 ANWTCLPTIWKGCRDLVKCKCKTGCSSTSNCSCKRSNVDC 1286
             +W       +   DL+ C C   C   S C C  + + C
Sbjct: 977  VHWMDGQPAPQAILDLLACNCTRKC-VLSKCVCMTNGLKC 1015

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1309
cd00128	316	XPG Xeroderma pigmentosum G N- and I-regions (XPGN	97.69
smart00475	259	53EXOc 5'-3' exonuclease.	97.57
COG0258	310	Exo 5'-3' exonuclease (including N-terminal domain	97.44
cd00008	240	53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas	97.4
PRK14976	281	5'-3' exonuclease; Provisional	97.27
PTZ00217	393	flap endonuclease-1; Provisional	97.18
PRK09482	256	flap endonuclease-like protein; Provisional	96.99
TIGR03674	338	fen_arch flap structure-specific endonuclease. End	96.92
KOG2519|consensus	449		96.87
PRK05755	880	DNA polymerase I; Provisional	96.62
KOG2518|consensus	556		96.49
PRK03980	292	flap endonuclease-1; Provisional	96.43
TIGR00593	887	pola DNA polymerase I. This family is based on the	95.42
PF03638	42	TCR: Tesmin/TSO1-like CXC domain, cysteine-rich do	94.5
PHA00439	286	exonuclease	92.6
PF05991	166	NYN_YacP: YacP-like NYN domain; InterPro: IPR01029	92.12
TIGR00600	1034	rad2 DNA excision repair protein (rad2). All prote	88.06

>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases

Probab=97.69  E-value=7.7e-05  Score=86.35  Aligned_cols=96  Identities=21%  Similarity=0.213  Sum_probs=72.0

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccC-C-CceeeeehhHHHHhhcccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNY-G-KKQRFFAAHEIAVNLGTEKSV 1106 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~-g-~~~r~i~i~~i~~~lG~~~~~ 1106 (1309)
                      -|||-.+.    .-+..|. ...|.|+|+|++++..           ..++..+.. + ...+.|+...+.+.+|-. -.
T Consensus       149 ~EAdaq~a----~l~~~g~-v~~i~S~DsD~l~fg~-----------~~vi~~~~~~~~~~~~~~~~~~~~~~lgl~-~~  211 (316)
T cd00128         149 YEAEAQCA----YLAKKGL-VDAIITEDSDLLLFGA-----------PRVYRNLFDSGAKPVEEIDLEKILKELGLT-RE  211 (316)
T ss_pred             cCHHHHHH----HHHhCCC-eeEEEecCCCeeeecC-----------ceEEEecccCCCCceEEEEHHHHHHHcCCC-HH
Confidence            48887642    2334453 5578899999998752           234443332 2 367889999999999753 34


Q ss_pred             cccccccccCCcccccccccchhhHhhhhhccchH
Q psy7142        1107 ALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYV 1141 (1309)
Q Consensus      1107 al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~ 1141 (1309)
                      -++-|=+++|||.+..+.|+|-++|+++++++..+
T Consensus       212 q~id~~~L~G~Dy~~gv~giG~k~A~~li~~~~~~  246 (316)
T cd00128         212 KLIDLAILLGCDYTEGIPGIGPVTALKLIKKYGDI  246 (316)
T ss_pred             HHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCh
Confidence            57888899999999999999999999999988775

XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.

>smart00475 53EXOc 5'-3' exonuclease

Probab=97.57  E-value=0.00056  Score=77.59  Aligned_cols=106  Identities=19%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCC-CceeeeehhHHHHhhcccccccc
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYG-KKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g-~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      |||-.|-.=|..+..+| ..++|.|.|.|.+-+.--   .      ..+|.. ..+ ...+.++...+.+.+|- .-..+
T Consensus       107 EADD~iatla~~~~~~g-~~~~IvS~DkDl~ql~~~---~------v~~~~~-~~~~~~~~~~~~~~v~~~~Gv-~p~q~  174 (259)
T smart00475      107 EADDVIATLAKKAEAEG-YEVRIVSGDKDLLQLVSD---K------VSVLDP-TKGIKEFELYTPENVIEKYGL-TPEQI  174 (259)
T ss_pred             CHHHHHHHHHHHHHhCC-CeEEEEeCCCcHhhcCCC---C------EEEEec-cCCCCccEEEcHHHHHHHhCc-CHHHH
Confidence            89887655455555555 477888999998766411   0      123432 232 23467999999999985 23457


Q ss_pred             cccccccC--CcccccccccchhhHhhhhhccchHHHHHHH
Q psy7142        1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVA 1147 (1309)
Q Consensus      1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~ 1147 (1309)
                      +-+.|+.|  ||..+...|+|.++|.++++++..+-..+..
T Consensus       175 ~d~~aL~GD~sDnipGV~GIG~KtA~~Ll~~ygsle~i~~~  215 (259)
T smart00475      175 IDYKALMGDSSDNIPGVPGIGEKTAAKLLKEFGSLENILEN  215 (259)
T ss_pred             HHHHHHhCCcccCCCCCCCCCHHHHHHHHHHhCCHHHHHHH
Confidence            78899999  8999999999999999999998877555544

>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair]

Probab=97.44  E-value=0.0013  Score=76.34  Aligned_cols=229  Identities=20%  Similarity=0.249  Sum_probs=138.1

Q ss_pred             cceEEeccceee----cccCC--CCccchhhhhHHHHHHHHHhhhcccCCCeeEEEEeccCCCCchhhhhhccCCCCcee
Q psy7142         888 CDVVVCDGAALI----HATPP--RNSRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQ  961 (1309)
Q Consensus       888 ~~~~IiDG~alv----h~l~~--~~~~tF~~ya~~~f~~yv~~~~~~~~~~ridVVFD~Y~~~SlK~~eR~kRGs~~~~~  961 (1309)
                      ..++.|||+.++    |++++  .+..-+..=+-..|..++.+.+.......+-||||. .++..|.++-++|=..-.. 
T Consensus        11 ~~l~~IDg~~~lyr~~~a~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~vFD~-~~~tfR~~~~~~yK~~R~~-   88 (310)
T COG0258          11 GKLLLIDGSSLLYRALHALPQPLGNPLGDPTGAVSGFLGMLYRLIRLLEPTHPVVVFDG-KPPTFRHELLEEYKANREK-   88 (310)
T ss_pred             CcEEEEechHHHHHHHHhcchhcCCCCCCCccHHHHHHHHHHHHHHhcCCCcEEEEEcC-CCCcchHHHHHHHHhCCCc-
Confidence            478899996554    45543  211211111566777777777776666889999999 8888887776654221100 


Q ss_pred             ecCCCCCCcchhhhhcccCchhhhHHHHHHHHHhhccceEEEEecCceeeeccCCccccccCCCCcccccchHHHHHHHH
Q psy7142         962 VTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRD 1041 (1309)
Q Consensus       962 V~~~t~iP~nW~~FLsn~~NK~eLi~fL~~~~~e~~~~k~vVt~~G~~v~~~~~~~~~~~~l~~c~hEEADTrIilHa~~ 1041 (1309)
                           ..|.+...          =+..+.+.+.+          .|..++.             ..--|||--|=--|..
T Consensus        89 -----~~p~~l~~----------q~~~i~~~~~~----------~~~~~l~-------------~~G~eadd~i~t~A~~  130 (310)
T COG0258          89 -----EMPDELAP----------QIPILTELLVA----------LGIPLLE-------------LMGIEADDPIETLAQK  130 (310)
T ss_pred             -----cCHHHHHH----------HHHHHHHHHHH----------hCcHhhh-------------cCCCCcchhHHHHHHH
Confidence                 12322111          12223333332          1211211             1122477766655666


Q ss_pred             HHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCcee-eeehhHHHHhh-cccccccccccccccC--C
Q psy7142        1042 AVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQR-FFAAHEIAVNL-GTEKSVALRGFHAFSG--C 1117 (1309)
Q Consensus      1042 a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r-~i~i~~i~~~l-G~~~~~al~~~HAftG--c 1117 (1309)
                      |...|+ .+.|.|.|.|.+.+.--           .+.+..+..+... ++++..+.+.+ |.... -|+-+=|++|  |
T Consensus       131 a~~~g~-~~~I~S~DkD~lql~~~-----------~~~~~~~~~~~~~~~~~~~~~~e~~~g~~p~-qliD~~~L~Gd~s  197 (310)
T COG0258         131 AYKKGD-VVLIISGDKDLLQLVSP-----------NVLVINGKKGEPEKFLDLEEVEEKFKGLTPE-QLIDLKALVGDSS  197 (310)
T ss_pred             HHhcCC-eEEEEeCCcchhhhcCC-----------CcEEEeccCCCCcccCCHHHHHHHHcCCCHH-HHHHHHHHhCCcc
Confidence            665555 67777999998887622           3444444433322 68899999998 65544 8899999999  9


Q ss_pred             cccccccccchhhHhhhhhccchHHHHHHHhcCCCCchhHHHHHHHHHHhhh
Q psy7142        1118 DTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDELLQDLEQFVVY 1169 (1309)
Q Consensus      1118 Dtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~~~~~~l~ee~f~~lErFvc~ 1169 (1309)
                      |.++.-.|+|.++|+++++.+..+-..+..+...+....+......|.+.+.
T Consensus       198 DnipGV~GIG~ktA~~Ll~~~gs~e~i~~~~~~~~~~~~~~l~~~~~~afl~  249 (310)
T COG0258         198 DNIPGVKGIGPKTALKLLQEYGSLEGLYENLDIIKKKTREKLLEDKEKAFLS  249 (310)
T ss_pred             cCCCCCCCcCHHHHHHHHHHhCCHHHHHHhhhhhcchhhHHHHHHHHHHhcC
Confidence            9999999999999999999988665545443221222233345555555543

>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes

Probab=97.40  E-value=0.002  Score=72.32  Aligned_cols=105  Identities=20%  Similarity=0.263  Sum_probs=77.1

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      -|||=.|-.=|..+..+| ..++|.|.|.|.+-+.       .    ..+++....  +.+.|+...+.+.+|.. -.-+
T Consensus       107 ~EADD~ia~la~~~~~~g-~~~~I~S~DkD~~ql~-------~----~~v~~~~~~--~~~~i~~~~v~~~~g~~-p~q~  171 (240)
T cd00008         107 YEADDVIGTLAKKAEAEG-YKVVIVSGDKDLLQLV-------S----DNVKVVSPM--KKKLVTEENVIEKYGVT-PAQI  171 (240)
T ss_pred             cCHHHHHHHHHHHHHHcC-CeEEEEeCCCChhhhC-------C----CCEEEEeCC--CceEEeHHHHHHHhCcC-HHHH
Confidence            489987654444445555 5788889999988764       1    234333222  34578999898888853 3457


Q ss_pred             cccccccC--CcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      +-|.|+.|  ||..+..-|+|.++|.++++++..+...+..+
T Consensus       172 ~d~~~L~GD~sDnipGv~GiG~ktA~~Ll~~~gsle~i~~~~  213 (240)
T cd00008         172 IDYKALMGDSSDNIPGVPGIGEKTAAKLLKEYGSLEGILENL  213 (240)
T ss_pred             HHHHHHcCCcccCCCCCCccCHHHHHHHHHHhCCHHHHHHhH
Confidence            78899999  99999999999999999999988876666554

They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.

>PRK14976 5'-3' exonuclease; Provisional

Probab=97.27  E-value=0.0052  Score=70.65  Aligned_cols=107  Identities=20%  Similarity=0.252  Sum_probs=77.9

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhccccccccc
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALR 1109 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al~ 1109 (1309)
                      |||=-|-.=+..+..+| ..|+|.|.|.|.+.|.--   .      ..+|.. ..+..++.|+...+.+.+|-. -.-++
T Consensus       113 EADDviatla~~~~~~g-~~v~IvS~DkDl~ql~~~---~------v~~~~~-~~~~~~~~~~~~~v~~~~gv~-p~q~~  180 (281)
T PRK14976        113 EADDLIGSLAKKLSKQN-ITVLIYSSDKDLLQLVNE---N------TDVLLK-KKGTSHFILNTNNFFELYGIE-PKQII  180 (281)
T ss_pred             CHHHHHHHHHHHHHHCC-CeEEEEeCCCCcCccCCC---C------eEEEEe-cCCCCcEEEcHHHHHHHhCcC-HHHHH
Confidence            89876544444455555 467899999999887510   0      223332 334336789999999999852 23477


Q ss_pred             ccccccC--CcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1110 GFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1110 ~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      -+.|+.|  ||..+...|+|.++|.++++++..+...+..+
T Consensus       181 d~~aL~GD~sDnipGVpGIG~KtA~~LL~~~gsle~i~~~~  221 (281)
T PRK14976        181 DYKGLVGDSSDNIKGVKGIGPKTAIKLLNKYGNIENIYENI  221 (281)
T ss_pred             HHHHHhCCccCCCCCCCcccHHHHHHHHHHcCCHHHHHHhH
Confidence            8899999  99999999999999999999988876655543

>PTZ00217 flap endonuclease-1; Provisional

Probab=97.18  E-value=0.0016  Score=77.89  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=74.7

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      .|||-.+    +.-+..|. ...|.|+|+|++++..-   .+-    -++...-+.+....+|+...+.+.+|-. -.-+
T Consensus       159 ~EAdaq~----A~L~~~g~-v~~ViS~D~D~l~fg~~---~vi----~~l~~~~~~~~~~~~~~~~~v~~~~gl~-~~q~  225 (393)
T PTZ00217        159 CEAEAQC----AELVKKGK-VYAVATEDMDALTFGTP---VLL----RNLNFSEAKKRPIQEINLSTVLEELGLS-MDQF  225 (393)
T ss_pred             cCHHHHH----HHHHHCCC-eEEEeCCCcCeeecCCc---EEE----EcccccccCCCCeEEEEHHHHHHHhCCC-HHHH
Confidence            3888753    22334555 45678999999987622   100    0111111123346789999999998753 2456


Q ss_pred             cccccccCCcccccccccchhhHhhhhhccchHHHHHHHhc
Q psy7142        1109 RGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAIS 1149 (1309)
Q Consensus      1109 ~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~ 1149 (1309)
                      +-|=+++|||.+..+.|+|-++|+++++++..+...+..+.
T Consensus       226 id~~iL~G~Dy~pgi~GIG~ktA~~Li~~~gsle~il~~~~  266 (393)
T PTZ00217        226 IDLCILCGCDYCDTIKGIGPKTAYKLIKKYKSIEEILEHLD  266 (393)
T ss_pred             HHHHHHhCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHHH
Confidence            77889999999999999999999999999988766655543

>PRK09482 flap endonuclease-like protein; Provisional

Probab=96.99  E-value=0.0049  Score=69.91  Aligned_cols=200  Identities=17%  Similarity=0.239  Sum_probs=121.7

Q ss_pred             ceEEeccceeecccCCCC--ccchhhhhHHHHHHHHHhhhcccCCCeeEEEEeccCCCCchhhhhhccCCCCceeec---
Q psy7142         889 DVVVCDGAALIHATPPRN--SRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVT---  963 (1309)
Q Consensus       889 ~~~IiDG~alvh~l~~~~--~~tF~~ya~~~f~~yv~~~~~~~~~~ridVVFD~Y~~~SlK~~eR~kRGs~~~~~V~---  963 (1309)
                      .+++|||++++++---..  +..+ .-|-.-|...+.+.+...+...+-|+||.-.+.+           +.|+++.   
T Consensus         4 ~llLiDg~~l~~R~~~a~~~~~g~-t~av~gf~~~l~~ll~~~~p~~i~v~fD~~~~~~-----------~fR~~l~p~Y   71 (256)
T PRK09482          4 HLLIIDALNLIRRIHAVQPSPNDI-NACVETCQHALDKLIRHSQPTHAVAVFDGDARSS-----------GWRHQLLPDY   71 (256)
T ss_pred             eEEEEeCcHHHHHHHhCCCCCCCc-chHHHHHHHHHHHHHHHcCCCEEEEEEeCCCCCc-----------ccHHHHhHHH
Confidence            489999999998641101  1222 4455677888888887667788999999743211           1222222   


Q ss_pred             --CCCCCCcchhhhhcccCchhhhHHHHHHHHHhhccceEEEEecCceeeeccCCccccccCCCCcccccchHHHHHHHH
Q psy7142         964 --PNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRD 1041 (1309)
Q Consensus       964 --~~t~iP~nW~~FLsn~~NK~eLi~fL~~~~~e~~~~k~vVt~~G~~v~~~~~~~~~~~~l~~c~hEEADTrIilHa~~ 1041 (1309)
                        ...+.|..+..-+          ..+ +.+.+.         .|-.+...             .-=|||=-|--=|..
T Consensus        72 Ka~R~~~Pe~l~~Q~----------~~i-~~~l~~---------~gi~~~~~-------------~g~EADDvIatla~~  118 (256)
T PRK09482         72 KAGRKPMPEALQQGL----------PAI-RAAFEE---------LGIDSWHA-------------DGNEADDLIATLAVK  118 (256)
T ss_pred             hcCCCCCcHHHHHHH----------HHH-HHHHHh---------CCCCEecc-------------CCcCHHHHHHHHHHH
Confidence              1123454433311          111 122211         13222111             123788766554555


Q ss_pred             HHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccccccccccC--Ccc
Q psy7142        1042 AVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSG--CDT 1119 (1309)
Q Consensus      1042 a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al~~~HAftG--cDt 1119 (1309)
                      +..+|+ .|+|.|.|.|.+-|.       .    ..+++-...  +.++++...+.+.+|-. -.-++-|.|+.|  +|.
T Consensus       119 ~~~~~~-~v~I~S~DKDl~Qlv-------~----~~v~~~~~~--~~~~~~~~~v~~~~Gv~-P~q~~D~~aL~GD~sDn  183 (256)
T PRK09482        119 VAQAGH-QATIVSTDKGYCQLL-------S----PTIQIRDYF--QKRWLDAPFIEQEFGVE-PQQLPDYWGLAGISSSK  183 (256)
T ss_pred             HHHCCC-eEEEEECCCCccccC-------C----CCeEEEecc--ccccCCHHHHHHHhCCC-HHHHHHHHHHhCCCccC
Confidence            555664 688889999976553       1    233322111  23568999999999853 244567789999  889


Q ss_pred             cccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1120 VSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1120 ts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      .+.-.|+|.++|.++++++..+-..+..+
T Consensus       184 IpGVpGIG~KtA~~LL~~~gsle~i~~~~  212 (256)
T PRK09482        184 IPGVAGIGPKSAAELLNQFRSLENIYESL  212 (256)
T ss_pred             CCCCCCcChHHHHHHHHHhCCHHHHHHhH
Confidence            99999999999999999988876666554

>TIGR03674 fen_arch flap structure-specific endonuclease

Probab=96.92  E-value=0.0047  Score=72.69  Aligned_cols=104  Identities=18%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCC----------ceeeeehhHHHHh
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGK----------KQRFFAAHEIAVN 1099 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~----------~~r~i~i~~i~~~ 1099 (1309)
                      |||..    ++..+..|. ...|.|+|.|++.+..-..  +     -+++. .|.++          ....|+..++.+.
T Consensus       152 EAeaq----~a~L~~~g~-vd~v~S~D~D~l~fg~~~v--i-----~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~v~~~  218 (338)
T TIGR03674       152 EGEAQ----AAYMAKKGD-VDYVGSQDYDSLLFGAPRL--V-----RNLTI-SGKRKLPGKNIYVEVKPELIELEEVLSE  218 (338)
T ss_pred             cHHHH----HHHHHHCCC-eeEEecCCcCeeeecCCEE--E-----Eeccc-ccccCCCcccccccccceeeeHHHHHHH
Confidence            88864    333445563 4477899999999863211  0     01111 12110          3456899999998


Q ss_pred             hcccccccccccccccCCcccccccccchhhHhhhhhccchHHHHHHH
Q psy7142        1100 LGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVA 1147 (1309)
Q Consensus      1100 lG~~~~~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~ 1147 (1309)
                      +|-. -..++-+=+++|||......|+|.++|++++++|..+...+..
T Consensus       219 lgl~-~~q~id~~iL~G~dyn~Gv~GIG~ktA~kli~~~gsie~il~~  265 (338)
T TIGR03674       219 LGIT-REQLIDIAILVGTDYNEGVKGIGPKTALKLIKEHGDLEKVLKA  265 (338)
T ss_pred             hCCC-HHHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHh
Confidence            8742 3456777889999999999999999999999998887665554

Endonuclease that cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Has 5'-endo-/exonuclease and 5'-pseudo-Y-endonuclease activities. Cleaves the junction between single and double-stranded regions of flap DNA

>KOG2519|consensus

Probab=96.87  E-value=0.0014  Score=78.24  Aligned_cols=178  Identities=20%  Similarity=0.174  Sum_probs=112.8

Q ss_pred             CCCeeEEEEeccCCCCchhhhhhccCC---CCc--eeecCCCCCCcchhhhhcccCchhhhHHHHHHHHHhhccceEEEE
Q psy7142         930 SADRIDVVWDLYFPDSLKNSLREVRGK---SQR--LQVTPNSPVPRNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVT 1004 (1309)
Q Consensus       930 ~~~ridVVFD~Y~~~SlK~~eR~kRGs---~~~--~~V~~~t~iP~nW~~FLsn~~NK~eLi~fL~~~~~e~~~~k~vVt 1004 (1309)
                      ++. .-+|||+-.+ -||+.|+.||+.   ++.  .+.+..+..+.+|.+|.+...-=+.=+..=++.+.+. -++.+++
T Consensus        74 gi~-Pv~VfDG~pP-~lKs~e~~kR~~rr~~a~~~~~~~~e~~~~~~~~k~~~r~vkvtk~~~dEak~LL~l-mGIp~i~  150 (449)
T KOG2519|consen   74 GIK-PVYVFDGKPP-DLKSQELAKRSERRSEADKELKPAKEAGAKENMEKFFSRLVKVTKQHNDEAKRLLSL-MGIPVLD  150 (449)
T ss_pred             CCc-EEEEECCCCC-CcchHHHHHHHHHhhhhhhhhhhHHHhhhHHHHHHHHHHHhhhcchhhHHHHHHHHH-cCCeeec
Confidence            444 5599999988 999999999974   333  2333455667888888776422111111222333321 1233333


Q ss_pred             ecCceeeeccCCccccccCCCCcccccchHHHHHHHHHHhcCC-eeEEEEecCCCeeeehhhhhhhhhccCccceEEEcc
Q psy7142        1005 NIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGA-KKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLN 1083 (1309)
Q Consensus      1005 ~~G~~v~~~~~~~~~~~~l~~c~hEEADTrIilHa~~a~~~g~-~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g 1083 (1309)
                      .                      ..||      ||.+|+.... ..-.+.++|.|.+-+..-   .+.    .++-...|
T Consensus       151 a----------------------p~EA------EAqCA~Lnk~g~V~~~at~DsD~l~fg~~---~~l----r~l~~s~~  195 (449)
T KOG2519|consen  151 A----------------------PGEA------EAQCAALNKAGKVYAVATEDSDALTFGAP---VKL----RHLIHSLA  195 (449)
T ss_pred             C----------------------CchH------HHHHHHHhhcCceeeeeccccchhhccCH---HHH----HHhccchh
Confidence            2                      1122      5666665444 566788999996554422   111    12223367


Q ss_pred             CCCceeeeehhHHHHhhcccccccccccccccCCcccccccccchhhHhhhhhccchHHHHHH
Q psy7142        1084 YGKKQRFFAAHEIAVNLGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFV 1146 (1309)
Q Consensus      1084 ~g~~~r~i~i~~i~~~lG~~~~~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~ 1146 (1309)
                      .|.-+.-|+...|.+.||-.. ..+..+=.++|||.-+...|+|+.+|+++++++.+.+..+.
T Consensus       196 ~~~pv~e~~~~~il~~l~l~~-~~fidL~lLlGCDYc~~I~Gig~~~al~lir~~~~i~~ile  257 (449)
T KOG2519|consen  196 SGLPVSEYDMSRILEGLGLSR-ESFIDLCLLLGCDYCPTIRGIGPKKALKLIRQHGDIENILE  257 (449)
T ss_pred             cCCCeEEeeHHHHHHHhcccH-HHHHHHHHHhcCcccccccccChHHHHHHHHHhcCHHHHhh
Confidence            777777789999999886532 23445556899999999999999999999999988766554

>PRK05755 DNA polymerase I; Provisional

Probab=96.62  E-value=0.029  Score=73.85  Aligned_cols=108  Identities=21%  Similarity=0.243  Sum_probs=79.6

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhccccccccc
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALR 1109 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al~ 1109 (1309)
                      |||-.|-.=|..+...| ..|+|.|.|.|.+-|.--   .      ..+|...+ +...+.++...+.+.+|-. -.-++
T Consensus       109 EADD~ia~la~~~~~~~-~~~~i~S~DkD~~ql~~~---~------v~~~~~~~-~~~~~~~~~~~v~~~~g~~-p~q~~  176 (880)
T PRK05755        109 EADDVIGTLAKQAEAAG-YEVLIVTGDKDLLQLVDD---N------VTLLDTMG-VSKNEELDPEEVVEKYGVT-PEQII  176 (880)
T ss_pred             cHHHHHHHHHHHHHhCC-CcEEEEcCCCChhhhCCC---C------EEEeeccC-CCCCeEEcHHHHHHHHCcC-HHHHH
Confidence            89987654455555555 478899999998877511   1      23343332 2345679999999999842 34578


Q ss_pred             ccccccC--CcccccccccchhhHhhhhhccchHHHHHHHhc
Q psy7142        1110 GFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAIS 1149 (1309)
Q Consensus      1110 ~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~ 1149 (1309)
                      -+.|+.|  ||..+..-|+|.++|.++++++..+...+..+.
T Consensus       177 d~~~L~GD~sDnipGv~GiG~ktA~~Ll~~~gsle~i~~~~~  218 (880)
T PRK05755        177 DYLALMGDSSDNIPGVPGIGEKTAAKLLQEYGSLEGLYENLD  218 (880)
T ss_pred             HHHHHhCCccCCCCCCCCccHHHHHHHHHHcCCHHHHHHhHH
Confidence            8999999  799999999999999999999998877666544

>KOG2518|consensus

Probab=96.49  E-value=0.011  Score=71.77  Aligned_cols=120  Identities=19%  Similarity=0.259  Sum_probs=74.6

Q ss_pred             ccccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE---ccCCCceeeeehhHHHHhhccc-
Q psy7142        1028 FEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS---LNYGKKQRFFAAHEIAVNLGTE- 1103 (1309)
Q Consensus      1028 hEEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~---~g~g~~~r~i~i~~i~~~lG~~- 1103 (1309)
                      .=|||..|..=    ..+|.-..|| |+|.|++|.+.-           .+.++   +|.|--   |+..++....|-. 
T Consensus       148 PyEADAQlayL----~~~~~i~~II-TEDSDLl~fGc~-----------~vifK~d~~G~~le---~~~~~l~~~~~l~~  208 (556)
T KOG2518|consen  148 PYEADAQLAYL----EREGIVDAII-TEDSDLLVFGCK-----------KVIFKMDSFGNGLE---INRSKLPECKPLGD  208 (556)
T ss_pred             CccccchhHHH----HhcCcceEEE-eccccccccCch-----------hheeeccCCCCccc---ccHhhhhhcccccc
Confidence            34788886432    2556655555 899999998633           33333   444433   3666665554433 


Q ss_pred             cc--ccccccccccCCcccccccccchhhHhhhhhccchHHHHHHHhc-CCCCchhHHHHHHHHHH
Q psy7142        1104 KS--VALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAIS-KPLPELGDELLQDLEQF 1166 (1309)
Q Consensus      1104 ~~--~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~-~~~~~l~ee~f~~lErF 1166 (1309)
                      ..  .-+..+=.|||||.+++.-|.|=.+|.|++..+...-.....+. ..--.+.++-+...|+.
T Consensus       209 ~~~~ekfr~mciLSGCDYl~slpGvGl~tA~k~l~k~~~~d~vi~~~~~~~~l~Vpd~y~~~F~~A  274 (556)
T KOG2518|consen  209 KFTEEKFRRMCILSGCDYLSSLPGVGLATAHKLLSKYNTPDRVIISHLLKKKLTVPDDYIENFERA  274 (556)
T ss_pred             ccCHHHHHHHHHhcCCcccccCccccHHHHHHHHHhcCcHHHHHHHHHhccCCcCCHHHHHHHHHH
Confidence            11  12455667999999999999999999999999888655443221 11123455555555544

>PRK03980 flap endonuclease-1; Provisional

Probab=96.43  E-value=0.0088  Score=69.15  Aligned_cols=97  Identities=18%  Similarity=0.135  Sum_probs=68.4

Q ss_pred             HHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCC----------CceeeeehhHHHHhhccccccccccc
Q psy7142        1042 AVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYG----------KKQRFFAAHEIAVNLGTEKSVALRGF 1111 (1309)
Q Consensus      1042 a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g----------~~~r~i~i~~i~~~lG~~~~~al~~~ 1111 (1309)
                      -+..|. ...|.|+|.|+|.+..-.   +-    -++++ .|.+          .....|+.+++.+.+|-. -.-++-|
T Consensus       113 L~~~g~-vd~V~S~D~D~l~fg~~~---vi----r~l~~-~~~~~~p~~~~~~~~~~e~~~~~~vl~~lgl~-~~q~id~  182 (292)
T PRK03980        113 MAKKGD-AWAVGSQDYDSLLFGAPR---LV----RNLTI-SGKRKLPGKNVYVEVKPELIELEEVLKELGIT-REQLIDI  182 (292)
T ss_pred             HHHCCC-eEEEecCCcCeeeecCCE---EE----Eeecc-cccccCccccccccccceeeeHHHHHHHhCCC-HHHHHHH
Confidence            335564 446789999999987321   10    11222 2221          135578999999998753 3456777


Q ss_pred             ccccCCcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1112 HAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1112 HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      =+++|||......|+|-++|+++++++..+...+..+
T Consensus       183 ~iL~G~Dy~~GI~GIG~ktA~kLi~~~~sle~i~~~~  219 (292)
T PRK03980        183 AILVGTDYNPGIKGIGPKTALKLIKKHGDLEKVLEER  219 (292)
T ss_pred             HHhcCCCCCCCCCCccHHHHHHHHHHCCCHHHHHHhc
Confidence            8899999999999999999999999998876665543

>TIGR00593 pola DNA polymerase I

Probab=95.42  E-value=0.12  Score=67.99  Aligned_cols=109  Identities=18%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE-ccCCCceeeeehhHHHHhhccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS-LNYGKKQRFFAAHEIAVNLGTEKSVA 1107 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~-~g~g~~~r~i~i~~i~~~lG~~~~~a 1107 (1309)
                      -|||=.|--=|..+..+|+ .|+|.|.|.|.+-|.-           .++++- ..++...+.++...+.+.+|-. -.-
T Consensus       106 ~EADDiIatla~~~~~~g~-~v~IvS~DkDllQLv~-----------~~v~~~~~~~~~~~~~~~~~~v~~~~Gv~-p~q  172 (887)
T TIGR00593       106 YEADDVIATLAKQAEKEGY-EVRIISGDKDLLQLVS-----------DNVKVLIPKGKTSFTEITPEYVVEKYGVT-PDQ  172 (887)
T ss_pred             ccHHHHHHHHHHHHHhCCC-cEEEEECCCChhhcCC-----------CCEEEEeccCCCCceEEcHHHHHHHhCCC-HHH
Confidence            3898876554555556665 5888899999877641           123322 2222245678999999999853 334


Q ss_pred             ccccccccC--CcccccccccchhhHhhhhhccchHHHHHHHhcC
Q psy7142        1108 LRGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISK 1150 (1309)
Q Consensus      1108 l~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~~ 1150 (1309)
                      ++-+-|+.|  ||..+..-|+|.++|.|+++++..+...+..+.+
T Consensus       173 ~~D~~aL~GD~sDnIpGVpGIG~KtA~kLL~~ygsle~i~~~~~~  217 (887)
T TIGR00593       173 LVDLKALVGDSSDNIPGVKGIGEKTAAKLLQEFGSLENIYENLDQ  217 (887)
T ss_pred             HHHHHHHcCCcccCCCCCCCcCHHHHHHHHHHcCCHHHHHHHHHH
Confidence            677899999  5999999999999999999999998777766543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03638 TCR: Tesmin/TSO1-like CXC domain, cysteine-rich domain; InterPro: IPR005172 This entry includes proteins that have two copies of a cysteine rich motif as follows: C-X-C-X4-C-X3-YC-X-C-X6-C-X3-C-X-C-X2-C

Probab=94.50  E-value=0.021  Score=47.81  Aligned_cols=39  Identities=28%  Similarity=0.750  Sum_probs=33.7

Q ss_pred             cccccccCC-CCCCCCcccccccCCcccccccCCCCCCCCCCC
Q psy7142        1261 DLVKCKCKT-GCSSTSNCSCKRSNVDCVPVLCSNCNGCSNMSQ 1302 (1309)
Q Consensus      1261 eLi~C~Ck~-gC~~~~~C~C~k~gl~Ct~~~C~~c~~C~N~~~ 1302 (1309)
                      +...|+|++ +|.- .-|.|..+|..|++ .|.| .+|.|.++
T Consensus         2 ~~~gC~Ckks~Clk-~YC~Cf~~g~~C~~-~C~C-~~C~N~~~   41 (42)
T PF03638_consen    2 KKKGCNCKKSKCLK-LYCECFQAGRFCTP-NCKC-QNCKNTEE   41 (42)
T ss_pred             CCCCCcccCcChhh-hhCHHHHCcCcCCC-Cccc-CCCCCcCC
Confidence            457899965 9996 59999999999999 9998 79999875

The family includes Tesmin Q9Y4I5 from SWISSPROT [] and TSO1 Q9LE32 from SWISSPROT []. This group of proteins is called a CXC domain in [].

>PHA00439 exonuclease

Probab=92.60  E-value=0.91  Score=52.63  Aligned_cols=86  Identities=21%  Similarity=0.220  Sum_probs=52.8

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      -|||=.|-.=|..+..+|+..|+|.|.|-|.+=|.       .   ...+|..  .+. .  +.       ++++...-+
T Consensus       119 ~EADDvIgtla~~~~~~g~~~vvIvS~DKDl~QLv-------~---~~~~~~~--~~~-~--~~-------~~~~~p~~~  176 (286)
T PHA00439        119 LEGDDVMGIIGTNPSLFGFKKAVLVSCDKDFKTIP-------N---CDFLWCT--TGN-I--LT-------QTPETADRW  176 (286)
T ss_pred             ccHHHHHHHHHHHHHHCCCCeEEEEeCCCCHhhcC-------c---ceEEEcc--CCc-e--EE-------cCcccHHHH
Confidence            48888775555556667777899999999976552       1   0112221  111 1  10       111211223


Q ss_pred             cccccccC--CcccccccccchhhHhhhhhc
Q psy7142        1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNS 1137 (1309)
Q Consensus      1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~ 1137 (1309)
                      +-+-|+.|  .|..+-..|+| ++|.+++++
T Consensus       177 ~d~~AL~GDsSDNIPGVpGIG-KTA~kLL~~  206 (286)
T PHA00439        177 HLFQTIKGDSTDGYSGIPGWG-DTAEAFLEN  206 (286)
T ss_pred             HhhhhcccccccCCCCCCCcC-HHHHHHHhC
Confidence            34557777  67777889999 999999987

>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana

Probab=92.12  E-value=0.41  Score=51.21  Aligned_cols=53  Identities=25%  Similarity=0.261  Sum_probs=36.0

Q ss_pred             EEeccceeecccCCCC---ccchhhhhHHHHHHHHHhhhcccCCCeeEEEEeccCCC
Q psy7142         891 VVCDGAALIHATPPRN---SRTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPD  944 (1309)
Q Consensus       891 ~IiDG~alvh~l~~~~---~~tF~~ya~~~f~~yv~~~~~~~~~~ridVVFD~Y~~~  944 (1309)
                      +||||.=++|+.|.-.   ...--+-|+..++..+..+.. ....++.||||.|...
T Consensus         1 LlIDGYNli~~~~~l~~~~~~~~l~~aR~~Li~~L~~y~~-~~~~~v~VVFDa~~~~   56 (166)
T PF05991_consen    1 LLIDGYNLIHAWPELRSLAERGDLEAARERLIEMLSEYAQ-FSGYEVIVVFDAYKVP   56 (166)
T ss_pred             CeEcchhhhCCCHHHHhhcCcCCHHHHHHHHHHHHHHHhc-ccCCEEEEEEeCCcCC
Confidence            4899999999954211   111224566677777766554 5668999999999764

The function of this family is unknown.

>TIGR00600 rad2 DNA excision repair protein (rad2)

Probab=88.06  E-value=0.77  Score=61.13  Aligned_cols=95  Identities=18%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE-ccCCCceeeeehhHHHHhhccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS-LNYGKKQRFFAAHEIAVNLGTEKSVA 1107 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~-~g~g~~~r~i~i~~i~~~lG~~~~~a 1107 (1309)
                      -|||..+    +.-...|. .-.|.|+|.|+|+.+.-           .++.. ++.++...+|...++...||-. -..
T Consensus       793 ~EAEAqc----A~L~~~G~-vd~V~TeDsD~llFGa~-----------~v~rn~~~~~~~ve~~~~~~i~~~lglt-~~q  855 (1034)
T TIGR00600       793 MEAEAQC----AILDLLDQ-TSGTITDDSDIWLFGAR-----------HVYKNFFNQNKFVEYYQYVDIHNQLGLD-RNK  855 (1034)
T ss_pred             ccHHHHH----HHHHhCCC-eEEEEccccceeccCCc-----------eeeecccCCCCceEEeeHHHHHHHhCCC-HHH
Confidence            5777643    22234455 56677999999977532           22211 2344456678888888888753 256


Q ss_pred             ccccccccCCcccccccccchhhHhhhhhccch
Q psy7142        1108 LRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDY 1140 (1309)
Q Consensus      1108 l~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~ 1140 (1309)
                      |..|=.+.|||.+....|+|-++|+++++.+..
T Consensus       856 li~laiL~G~DY~~GI~GIGpktAl~li~~~~~  888 (1034)
T TIGR00600       856 LINLAYLLGSDYTEGIPTVGPVSAMEILNEFPG  888 (1034)
T ss_pred             HHHHHHeeCCCCCCCCCcccHHHHHHHHHHcCC
Confidence            777888999999999999999999999998773

All proteins in this family for which functions are known are flap endonucleases that generate the 3' incision next to DNA damage as part of nucleotide excision repair. This family is related to many other flap endonuclease families including the fen1 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1309
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3ooi_A	232	Histone-lysine N-methyltransferase, H3 lysine-36 l	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 3e-12
 Identities = 101/708 (14%), Positives = 193/708 (27%), Gaps = 220/708 (31%)

Query: 597  HWLKHADEIVNTETNGSE--CLDVIPDNNN---QSLDVSWAAFHASRHHAKSGISSESTV 651
            H   H D     ET   +    D++    +    + D         +   KS +S E  +
Sbjct: 2    HHHHHMD----FETGEHQYQYKDILSVFEDAFVDNFDCKDV-----QDMPKSILSKEE-I 51

Query: 652  DSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEE-------WVKEQCVKSKT 704
            D I+                L L+  L  +      Q  +EE       ++       + 
Sbjct: 52   DHIIMSKDAVSG-------TLRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103

Query: 705  HRHLHHEQYPAFQNEFMSNVNKLKDTFTAAGNPFQETSDELISLDSRVVSDEECVKMLR- 763
               +    Y   ++   ++                             VS  +    LR 
Sbjct: 104  QPSMMTRMYIEQRDRLYNDNQVFAKYN---------------------VSRLQPYLKLRQ 142

Query: 764  ----DSEARGILLY------KT-FVSERLSEGSKTNIFAPLKSNKIRIFNQMK-KKRNTD 811
                   A+ +L+       KT    +          +        +IF  +  K  N+ 
Sbjct: 143  ALLELRPAKNVLIDGVLGSGKTWVALDVCLS------YKVQCKMDFKIF-WLNLKNCNSP 195

Query: 812  KEMVHSLQNDVHLFQRCLTVSMNRKLDMENFFKHENSTYPPSLSSN---GHLRHALGKAD 868
            + ++  LQ             +  ++D  N+    + +    L  +     LR  L    
Sbjct: 196  ETVLEMLQK------------LLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 869  ILQPLEKLMNLER----NTFSDRC-------DVVVCDGAALIHATPPR---NSRTFEGYC 914
                L  L+N++     N F+  C          V D  +    T      +S T     
Sbjct: 243  YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 915  SQEFQRTIMGMI------ESCS----------------ADRIDVVWDLYFPDSLKNSLR- 951
             +      +         E  +                    D  W     D L   +  
Sbjct: 303  VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIES 361

Query: 952  --------EVRGKSQRLQVTP-NSPVPRN-----WSEFLKNNHNKEELFSLLGKY-LIEN 996
                    E R    RL V P ++ +P       W + +K++     + + L KY L+E 
Sbjct: 362  SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVVNKLHKYSLVE- 418

Query: 997  VKNVRVVTNIGTKYASSESNTSFLEGLDCSAFEEADGRIILHIRDAVLQGAKKVL----- 1051
             K               + +T  +  +      + +    LH         + ++     
Sbjct: 419  -KQ-------------PKESTISIPSIYLELKVKLENEYALH---------RSIVDHYNI 455

Query: 1052 VRTVDT-DVAVLAISFYF---------ELKNYGLEELF--VSLNYGKKQRFFAAHEIAVN 1099
             +T D+ D+    +  YF          +++     LF  V L++    RF        +
Sbjct: 456  PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF----RFLEQKIRHDS 511

Query: 1100 LGTEKSVALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKPLPELGDEL 1159
                 S ++         +T+    F+             Y+       + P  E    L
Sbjct: 512  TAWNASGSI--------LNTLQQLKFYKP-----------YICD-----NDPKYE---RL 544

Query: 1160 LQDLEQFVVYMYSKSSTGMTLDKTRQHLSQYEEKPFDRLPPTSEALRQ 1207
            +  +  F+  +          D  R  L   +E  F+      EA +Q
Sbjct: 545  VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE------EAHKQ 586

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 2e-10
 Identities = 88/659 (13%), Positives = 203/659 (30%), Gaps = 190/659 (28%)

Query: 485  SNLKKDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDL 544
             ++ K + +    D+I  +  + +        ++ +F           ++F      ++ 
Sbjct: 39   QDMPKSILSKEEIDHIIMSKDAVSG-------TLRLFWTLLSKQEEMVQKFVEEVLRINY 91

Query: 545  G--------STRIPELLY-SFSTVKPKFLHNKNPPLPK---CTEELANDLTKGLTMDSVY 592
                       R P ++   +   + + L+N N    K      +    L + L      
Sbjct: 92   KFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150

Query: 593  TK-ELH--------WLKHADEIVNTETNGSECLDVIPDNNNQSLDVSWAAFHASRHHAKS 643
                +         W+  A ++  +         V    + +   + W            
Sbjct: 151  KNVLIDGVLGSGKTWV--ALDVCLSY-------KVQCKMDFK---IFWLNL--------- 189

Query: 644  GISSESTVDSILKVTHVKKARMFHEFTALTLYSLLNEAYNSNSPQVTLEEWVKEQCVKSK 703
               + ++ +++L++                L   ++  + S S   +  +      ++++
Sbjct: 190  --KNCNSPETVLEML-------------QKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAE 233

Query: 704  THRHLHHEQYPAFQNEF--MSNVNKLK--DTF---------TAAGNPFQETSDELISLDS 750
              R L  + Y    N    + NV   K  + F         T     F++ +D L +  +
Sbjct: 234  LRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQVTDFLSAATT 286

Query: 751  RVVSDEECVKMLRDSEARGILLYKTFVSERLS----EGSKTN-----IFAPLKSNKIRIF 801
              +S +     L   E + +LL   ++  R      E   TN     I A    + +  +
Sbjct: 287  THISLDHHSMTLTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 802  NQMKKKRNTDKEMVHSLQNDVHLFQRCLTVSMNRKL--DMENFFKHENSTYPPS-LSSNG 858
            +   K  N DK     L   +      L  +  RK+   +  F    ++  P   LS   
Sbjct: 345  DNW-KHVNCDK-----LTTIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPTILLSL-- 394

Query: 859  HLRHALGKADILQPLEKLMN---LERNTFSDRC---DVVV-----CDGAALIHATPPRNS 907
             +   + K+D++  + KL     +E+           + +      +    +H +   + 
Sbjct: 395  -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453

Query: 908  RTFEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSP 967
               + + S           +      +D  +  +    LKN                   
Sbjct: 454  NIPKTFDS-----------DDLIPPYLDQYFYSHIGHHLKN------------------- 483

Query: 968  VPRNWSEFLKNNHNKEELFSLLGKYL----IENVKNVRVVTNIGTKYASSESNTSFLEGL 1023
                       +  +  LF ++  +L    +E  K    + +  T + +S S  + L+ L
Sbjct: 484  ---------IEHPERMTLFRMV--FLDFRFLEQ-K----IRHDSTAWNASGSILNTLQQL 527

Query: 1024 ---------DCSAFEEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAI----SFYFE 1069
                     +   +E    R++  I D  L   ++ L+ +  TD+  +A+       FE
Sbjct: 528  KFYKPYICDNDPKYE----RLVNAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 7e-09
 Identities = 64/416 (15%), Positives = 123/416 (29%), Gaps = 123/416 (29%)

Query: 862  HALGKADILQPLEK----------LMNLERNTFSDR-CDVVVCDGAALIHATPPRNSRT- 909
            H     DIL   E           + ++ ++  S    D ++         +    S T 
Sbjct: 14   HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--------MSKDAVSGTL 65

Query: 910  --FEGYCSQEFQRTIMGMIESCSADRIDVVWDLYFPDSLKNSLREVRGKSQRLQVTPNSP 967
              F    S++ +  +   +E     RI+  + L                   ++     P
Sbjct: 66   RLFWTLLSKQ-EEMVQKFVEE--VLRINYKF-LM----------------SPIKTEQRQP 105

Query: 968  VP--RNWSEFLKNNHNKEELFSLLGKYLIENVKNVRVVTNIGTKYASSESNTSFLEGLDC 1025
                R + E     +N  ++F+   KY   NV  ++    +             L  L  
Sbjct: 106  SMMTRMYIEQRDRLYNDNQVFA---KY---NVSRLQPYLKLRQA----------LLELR- 148

Query: 1026 SAFEEADGRIILHIRDAVLQGA-KKVLVRTVDTDVAVLAIS----FYFELKNYG------ 1074
                     +++      + G+ K  +   V     V        F+  LKN        
Sbjct: 149  -----PAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 1075 --LEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVALRGF---HAFSGC----DTVSTFAF 1125
              L++L   ++     R   +  I + + + ++  LR       +  C      V     
Sbjct: 200  EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVLLNVQN--- 255

Query: 1126 HGKQTAWKTWNSCDY-----VTSAFVAISKPLPELGDELLQDLEQFVVYMYSKSSTGMTL 1180
                   K WN+ +      +T+ F  ++        + L       + +    S  +T 
Sbjct: 256  ------AKAWNAFNLSCKILLTTRFKQVT--------DFLSAATTTHISL-DHHSMTLTP 300

Query: 1181 DKTRQHLSQYEEKPFDRLPPTSEALRQHALRAAYQGGHIWGQCMDPLAEIPSPDGW 1236
            D+ +  L +Y +     LP   E L  +  R +     I     D LA     D W
Sbjct: 301  DEVKSLLLKYLDCRPQDLPR--EVLTTNPRRLSI----IAESIRDGLATW---DNW 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 2e-06
 Identities = 87/651 (13%), Positives = 175/651 (26%), Gaps = 220/651 (33%)

Query: 241 FEYIAQLIRDKLHSNGAQYVFKMPSLISAYKRNLEILLGREASSQEVHSTRLRQRILCTF 300
            + +  + +  L      ++      +S   R    LL                      
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---------------------- 72

Query: 301 PQLQAHKSGREYILVQTGTNVHQDFISEVEDVTDGDAASYFKLTRSLRREIAKVSCSFSG 360
                               + Q F   VE+V   +   Y  L   ++            
Sbjct: 73  ---------------SKQEEMVQKF---VEEVLRIN---YKFLMSPIKT----------- 100

Query: 361 SFEGECQEASVPPVL-IAVLNLLLYGSTNNQTDTK------QPVLTIAQLLILNFRVRVR 413
               E ++ S+   + I   + L     +NQ   K      QP L + Q L         
Sbjct: 101 ----EQRQPSMMTRMYIEQRDRL---YNDNQVFAKYNVSRLQPYLKLRQAL--------- 144

Query: 414 DSRNSRTRREQGAPLP-M------YLALSAYSNNRSSKSVDDMHQLGLS-ISYKRLHKTI 465
                  R  +   +  +      ++AL    + +    V       +  ++ K  +   
Sbjct: 145 ----LELRPAKNVLIDGVLGSGKTWVALDVCLSYK----VQCKMDFKIFWLNLKNCNSPE 196

Query: 466 SGLCQLQS-----ERAKEEGLVCPSNLK----------KDLFTIGAYDN----IDH--NP 504
           + L  LQ      +          SN+K          + L     Y+N    + +  N 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 505 TSTTSKESFHGTSISIFQCR---------AENNLGTKREFHSTFNDVDLGSTRIPELLYS 555
            +     +F+        C+           + L      H + +   +  T   E+   
Sbjct: 257 KAW---NAFN------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSL 306

Query: 556 FSTVKPKFLHNKNPPLPKCTEELA-NDLTKGLTMDSVYTKELHW--LKH--ADEIVNTET 610
                 K+L  +   LP+  E L  N     +  +S+      W   KH   D++     
Sbjct: 307 LL----KYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 611 NGSECLD------------VIPDNNN---QSLDVSWAAFHASRHHAKSGISSESTVDSIL 655
           +    L+            V P + +     L + W                +S V  ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD------------VIKSDVMVVV 408

Query: 656 KVTHVKK--ARMFHEFTALTLYSLLNE--AYNSNSPQV---TLEEWVKEQCVKSKT---- 704
              H      +   E T +++ S+  E      N   +    ++ +   +   S      
Sbjct: 409 NKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 705 ------HRHL-HH-------EQYPAFQN-----EFMSNVNKLKDTFTAAGNPFQETSDEL 745
                 + H+ HH       E+   F+       F+    K++   TA         + L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDSTAWNAS-GSILNTL 524

Query: 746 ISLDSR----VVSDEECVKMLRDSEARGILLYKTFV---SERLSEGSKTNI 789
             L         +D +  +++             F+    E L     T++
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA--------ILDFLPKIEENLICSKYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 7e-05
 Identities = 84/620 (13%), Positives = 177/620 (28%), Gaps = 127/620 (20%)

Query: 62  MALKYYDDLPPNL-----DLDLLNEGQGLKATLLSRN-----AMWHRSCRLRFTSTRIRR 111
              +Y D L         + D  +     K+ L                        +  
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 112 LEKR------KSSLPAPPSPPPAPQISTTFTRSSSTTPKDLKQYVCFLCTKTDVAEKLTN 165
            ++       +  L           I T   R  S   +   +    L     V  K  N
Sbjct: 74  KQEEMVQKFVEEVL-RINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKY-N 130

Query: 166 VMTLEAADTMRKWAWELKKFELAGLLQGDLIALE-----GKYHKLCHTQLFNEYMRS--- 217
           V  L+    +R+   EL+            + ++     GK      T +  +   S   
Sbjct: 131 VSRLQPYLKLRQALLELRP--------AKNVLIDGVLGSGK------TWVALDVCLSYKV 176

Query: 218 ----------LTAKSKPTTQNVAES-EHLCSVMAFEYIAQL---IRDKLHSNGAQYVFKM 263
                     L  K+  + + V E  + L   +   + ++       KL  +  Q   + 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 264 PSLISAYKRNLEILLGREASSQEVHST-RLRQRILCTFPQLQAHKSGREYILVQTGTNVH 322
                 Y+  L +L      + +  +   L  +IL T       K   +++   T T++ 
Sbjct: 237 LLKSKPYENCLLVL--LNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSAATTTHIS 290

Query: 323 QDFISEVEDVTDGDAASYFKL-----TRSLRREIAKVSCSFSGSFEGECQEASVPPVLIA 377
            D  S    +T  +  S          + L RE+   +                 P  ++
Sbjct: 291 LDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTN-----------------PRRLS 331

Query: 378 VLNLLLYGSTNNQTDTKQPVLTIAQLLILNFRVRVRDSRNSRTRREQ------GAPLPMY 431
           ++   +        + K  V       I+   + V +    R   ++       A +P  
Sbjct: 332 IIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 432 LALSAYSNNRSSKSVDD-MHQL-GLSISYKRLHKTISGLCQLQSE-RAKEEGLVCPSNLK 488
           L LS    +     V   +++L   S+  K+  ++   +  +  E + K E       L 
Sbjct: 391 L-LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---ALH 446

Query: 489 KDLFTIGAYDNIDHNPTSTTSKESFHGTSISIFQCRAENNLGTKREFHSTFNDVDLGSTR 548
           + +  +  Y+      +               +     +++G     H    +     T 
Sbjct: 447 RSI--VDHYNIPKTFDSDDLIPPYLDQY---FY-----SHIG----HHLKNIEHPERMTL 492

Query: 549 IPELLYSFSTVKPKFLHNKNPPLPKCTEELANDLT-----KGLTMDS--VYTKELHWLKH 601
              +   F  ++ K  H+        +  + N L      K    D+   Y + ++ +  
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTA--WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 602 ADEIVNTETN--GSECLDVI 619
              +   E N   S+  D++
Sbjct: 551 F--LPKIEENLICSKYTDLL 568

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 4/49 (8%)

Query: 1255 IWKGCRDLVKCKCK----TGCSSTSNCSCKRSNVDCVPVLCSNCNGCSN 1299
                  ++ +C CK      C   S C  +    +C P +C     C N
Sbjct: 35   FTADLSEIPRCNCKATDENPCGIDSECINRMLLYECHPTVCPAGGRCQN 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1309
1a76_A	326	Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea	97.13
2izo_A	346	FEN1, flap structure-specific endonuclease; hydrol	96.98
3qe9_Y	352	Exonuclease 1; exonuclease, hydrolase-DNA complex;	96.88
1rxw_A	336	Flap structure-specific endonuclease; helical clam	96.82
1ul1_X	379	Flap endonuclease-1; protein complex, DNA-binding	96.81
1b43_A	340	Protein (FEN-1); nuclease, DNA repair, DNA replica	96.71
3ory_A	363	Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco	96.41
1bgx_T	832	TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi	95.8
1exn_A	290	5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent	95.7
3q8k_A	341	Flap endonuclease 1; helix-3 turn-helix, hydrophob	94.28

>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A

Probab=97.13  E-value=0.00078  Score=76.87  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEcc-CCCceeeeehhHHHHhhcccccccc
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLN-YGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g-~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      |||-.|-.-    +..|. .+.|.|+|.|++.+..           ..+++... .|+....|+..++.+.+|-. -.-+
T Consensus       152 EAD~~ia~L----a~~g~-~~~I~S~D~Dll~~~~-----------~~v~~~~~~~~~~~~~~~~~~v~~~~gl~-~~q~  214 (326)
T 1a76_A          152 EGEAQASYM----AKKGD-VWAVVSQDYDALLYGA-----------PRVVRNLTTTKEMPELIELNEVLEDLRIS-LDDL  214 (326)
T ss_dssp             CHHHHHHHH----HHTTS-SSEEECSSSGGGGGTC-----------SEEEESSSSCSSCCEEEEHHHHHHHHTCC-HHHH
T ss_pred             cHHHHHHHH----HHCCC-EEEEecCCcccceecC-----------CEEEEeecCCCCceEEEEHHHHHHHcCCC-HHHH
Confidence            899865332    22355 5667899999988852           22333332 24567889999999999853 3457


Q ss_pred             cccccccCCcccc-cccccchhhHhhhhhccchHHHHH
Q psy7142        1109 RGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTSAF 1145 (1309)
Q Consensus      1109 ~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~~f 1145 (1309)
                      +-+=+++|||..+ .+.|+|.++|+|++++ ..+...+
T Consensus       215 id~~~L~GsD~~p~GvpGiG~ktA~kli~~-gsle~i~  251 (326)
T 1a76_A          215 IDIAIFMGTDYNPGGVKGIGFKRAYELVRS-GVAKDVL  251 (326)
T ss_dssp             HHHHHHHCCTTSTTTTTTCCHHHHHHHHHH-TCHHHHH
T ss_pred             HHHHHHcCCCCCCCCCCCcCHHHHHHHHHc-CCHHHHH
Confidence            7888999999999 9999999999999998 6655544

>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus}

Probab=96.98  E-value=0.00072  Score=77.84  Aligned_cols=101  Identities=17%  Similarity=0.140  Sum_probs=68.0

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEc---cCC----C------ceeeeehhHH
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSL---NYG----K------KQRFFAAHEI 1096 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~---g~g----~------~~r~i~i~~i 1096 (1309)
                      |||-.|-.=    +..|. .+.|.|+|.|++.+..-           .+++..   |.+    +      ....|+...+
T Consensus       149 EADa~ia~L----a~~g~-~~~I~S~D~D~l~~~~~-----------~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~v  212 (346)
T 2izo_A          149 EGEAEAAYL----NKLGL-SWAAASQDYDAILFGAK-----------RLVRNLTITGKRKLPNKDVYVEIKPELIETEIL  212 (346)
T ss_dssp             CHHHHHHHH----HHTTS-SSEEECSSSHHHHTTCS-----------EEEESSCC-----------CCCCCCEEEEHHHH
T ss_pred             cHHHHHHHH----HhCCC-eEEEECCCCCcceecCC-----------eEEEEecccccccCcccccccccceEEEEHHHH
Confidence            899875322    23565 56778999999877621           122211   211    1      3567999999


Q ss_pred             HHhhcccccccccccccccCCcccc-cccccchhhHhhhhhccchHHHHHHH
Q psy7142        1097 AVNLGTEKSVALRGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTSAFVA 1147 (1309)
Q Consensus      1097 ~~~lG~~~~~al~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~~f~~ 1147 (1309)
                      .+.+|-. -..++-+-+++|||..+ .+.|+|-++|+|+++++..+...+..
T Consensus       213 ~~~~gl~-~~q~id~~~L~G~D~~p~Gv~GIG~KtA~kLi~~~gsle~i~~~  263 (346)
T 2izo_A          213 LKKLGIT-REQLIDIGILIGTDYNPDGIRGIGPERALKIIKKYGKIEKAMEY  263 (346)
T ss_dssp             HHHHTCC-HHHHHHHHHHHCCSSSTTCSTTCCHHHHHHHHHHSSCC------
T ss_pred             HHHcCCC-HHHHHHHHHHcCCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHH
Confidence            9999852 34577788999999999 99999999999999988765444443

>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*

Probab=96.88  E-value=0.0029  Score=73.17  Aligned_cols=102  Identities=17%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHH--HHhhcccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEI--AVNLGTEKSV 1106 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i--~~~lG~~~~~ 1106 (1309)
                      -|||-.|-.=    +.+|. .+.|.|+|+|++.+..           ..+.+.....++...|+...+  .+.+|.....
T Consensus       149 ~EADaqiA~L----a~~g~-~~~I~S~D~Dll~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  212 (352)
T 3qe9_Y          149 YEADAQLAYL----NKAGI-VQAIITEDSALLAFGC-----------KKVILKMDQFGNGLEIDQARLGMCRQLGDVFTE  212 (352)
T ss_dssp             SCHHHHHHHH----HHTTS-CSEEECSCGGGGGGTC-----------SEEEESCCTTSEEEEEEGGGGTTCCTTCSSCCH
T ss_pred             cchHHHHHHH----HHCCC-eEEEEeCCcCcccccC-----------CeEEEeccCCCCcEEEeHHHHHHHHHhCCCCCH
Confidence            4899876332    23555 4577899999887752           123333322222223555554  4566633222


Q ss_pred             -cccccccccCCcccccccccchhhHhhhhhcc--chHHHHHH
Q psy7142        1107 -ALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSC--DYVTSAFV 1146 (1309)
Q Consensus      1107 -al~~~HAftGcDtts~f~g~gK~~~~K~l~~~--~~~q~~f~ 1146 (1309)
                       -++-+=+++|||..+.+.|+|.++|+|+++++  .++-..+.
T Consensus       213 ~q~id~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~  255 (352)
T 3qe9_Y          213 EKFRYMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIK  255 (352)
T ss_dssp             HHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHT
T ss_pred             HHHHHHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHH
Confidence             36777889999999999999999999999998  45544443

>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A

Probab=96.82  E-value=0.0008  Score=77.09  Aligned_cols=96  Identities=16%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             hcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE-----ccCC---C-ceeeeehhHHHHhhcccccccccccccc
Q psy7142        1044 LQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS-----LNYG---K-KQRFFAAHEIAVNLGTEKSVALRGFHAF 1114 (1309)
Q Consensus      1044 ~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~-----~g~g---~-~~r~i~i~~i~~~lG~~~~~al~~~HAf 1114 (1309)
                      .+|. .+.|.|+|.|++.+..-   .+-    -++.+.     ++.|   . ....|+...+.+.+|-. -.-++-+-++
T Consensus       161 ~~g~-~~~I~S~D~Dllql~~~---~v~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~gl~-~~q~id~~~L  231 (336)
T 1rxw_A          161 AKGD-VEYTGSQDYDSLLFGSP---RLA----RNLAITGKRKLPGKNVYVDVKPEIIILESNLKRLGLT-REQLIDIAIL  231 (336)
T ss_dssp             HTTS-SSEEECSSSHHHHTTCS---EEE----ESCCC-------------CCCCEEEEHHHHHHHHTCC-HHHHHHHHHH
T ss_pred             HcCC-eeEEEcCCCCcceecCC---eEE----EeccccccccCCccccccccceEEeEHHHHHHHcCCC-HHHHHHHHhh
Confidence            5665 56678999999877631   110    011111     1111   1 45679999999999853 3457888899


Q ss_pred             cCCcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1115 SGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1115 tGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      +|||..+.+.|+|.++|.|+++++..+...+..+
T Consensus       232 ~GsD~ipGv~GiG~KtA~kLl~~~gsle~i~~~~  265 (336)
T 1rxw_A          232 VGTDYNEGVKGVGVKKALNYIKTYGDIFRALKAL  265 (336)
T ss_dssp             HCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred             cCCCCCCCCCCcCHHHHHHHHHHcCCHHHHHHhC
Confidence            9999999999999999999999987776655554

>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2

Probab=96.81  E-value=0.0013  Score=76.54  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=74.8

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEc---cCC-CceeeeehhHHHHhhccccc
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSL---NYG-KKQRFFAAHEIAVNLGTEKS 1105 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~---g~g-~~~r~i~i~~i~~~lG~~~~ 1105 (1309)
                      |||-.|-.=+..    |. .+.|.|+|+|++.+..           ..+++..   +.+ .....|+...+.+.+|-. -
T Consensus       157 EADd~iA~La~~----g~-~~~iiS~D~Dll~~g~-----------~~v~~~~~~~~~~k~~~~~~~~~~v~~~~gl~-~  219 (379)
T 1ul1_X          157 EAEASCAALVKA----GK-VYAAATEDMDCLTFGS-----------PVLMRHLTASEAKKLPIQEFHLSRILQELGLN-Q  219 (379)
T ss_dssp             CHHHHHHHHHHH----TS-SSEEECSCTHHHHTTC-----------SEEEECSSCCC-CCCCEEEEEHHHHHHHHTCC-H
T ss_pred             cHHHHHHHHHhc----CC-eEEEEecCcCcccccc-----------ceEEEEecccccCcCCeEEEeHHHHHHHhCCC-H
Confidence            899876544333    43 4678899999888762           1233322   122 236789999999999853 2


Q ss_pred             ccccccccccCCcccccccccchhhHhhhhhccchHHHHHHHhc
Q psy7142        1106 VALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAIS 1149 (1309)
Q Consensus      1106 ~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~ 1149 (1309)
                      .-++-+-+++|||++..+.|+|-++|+++++.+..+...+..+.
T Consensus       220 ~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~~gsle~i~~~~~  263 (379)
T 1ul1_X          220 EQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLD  263 (379)
T ss_dssp             HHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCC
T ss_pred             HHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHHcCCHHHHHHHHH
Confidence            34777889999999999999999999999999988766555543

>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A

Probab=96.71  E-value=0.0021  Score=73.81  Aligned_cols=98  Identities=16%  Similarity=0.154  Sum_probs=70.2

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccC-CC------------ceeeeehhH
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNY-GK------------KQRFFAAHE 1095 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~-g~------------~~r~i~i~~ 1095 (1309)
                      -|||-.|-.=+    ..|. .+.|.|+|.|++++..           ..+++.... |+            ....|+...
T Consensus       151 ~EADa~iA~La----~~g~-~~~i~S~D~D~l~~g~-----------~~v~~~~~~~~~~~~p~~~~~v~~~~~~~~~~~  214 (340)
T 1b43_A          151 SEGEAQAAYMA----AKGS-VYASASQDYDSLLFGA-----------PRLVRNLTITGKRKLPGKNVYVEIKPELIILEE  214 (340)
T ss_dssp             SCHHHHHHHHH----HHTS-SSEEECSSSHHHHTTC-----------SEEEESTTTCEEEECTTSSCEEEECCEEEEHHH
T ss_pred             hhHHHHHHHHH----HcCC-EEEEEccCCCcceecC-----------cEEEEEeccCCCccCcccccccccceeEEEHHH
Confidence            48998664322    2454 5677899999987752           123332221 11            345789999


Q ss_pred             HHHhhcccccccccccccccCCcccc-cccccchhhHhhhhhccchHHH
Q psy7142        1096 IAVNLGTEKSVALRGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTS 1143 (1309)
Q Consensus      1096 i~~~lG~~~~~al~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~ 1143 (1309)
                      +.+.+|-. -.-++-+=+++|||.++ .+.|.|-++|+|+++++..+..
T Consensus       215 v~~~~gl~-~~q~id~~~L~G~Dy~p~gv~GiG~ktA~kli~~~gsle~  262 (340)
T 1b43_A          215 VLKELKLT-REKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDPLA  262 (340)
T ss_dssp             HHHHHTCC-HHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTCSSGGG
T ss_pred             HHHHhCCC-HHHHHHHHHhcCCCCCCCCCCCccHHHHHHHHHHcCCHHH
Confidence            99999853 34477788899999999 9999999999999999876543

>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}

Probab=96.41  E-value=0.0022  Score=74.48  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=67.8

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE-----ccCCC----ceeeeehhHHHHhh
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS-----LNYGK----KQRFFAAHEIAVNL 1100 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~-----~g~g~----~~r~i~i~~i~~~l 1100 (1309)
                      |||-.|    +.-+++|. .+.|.|+|+|++.+..-   .+-    .++.+.     ++.+.    ....|+...+.+.+
T Consensus       166 EADaqi----A~La~~g~-~~~I~S~D~D~l~fg~~---~v~----~~l~~~~~~~~p~~~~~v~~~~~~~~~~~v~~~~  233 (363)
T 3ory_A          166 EGEAQA----AYIVKKGD-AYASASQDYDSLLFGSP---KLV----RNLTISGRRKLPRKNEYVEVKPELIELDKLLVQL  233 (363)
T ss_dssp             CHHHHH----HHHHHTTS-CSEEECSSSHHHHTTCS---EEE----ESTTTCEEEECSSTTCEEEECCEEEEHHHHHHHH
T ss_pred             cHHHHH----HHHHHCCC-eEEEECCCcCccccCCC---eEE----EEeeccccccCCccccccccceEEEcHHHHHHHh
Confidence            677754    22234555 56778999999887532   110    011100     11111    24789999999999


Q ss_pred             cccccccccccccccCCcccc-cccccchhhHhhhhhccchHHH
Q psy7142        1101 GTEKSVALRGFHAFSGCDTVS-TFAFHGKQTAWKTWNSCDYVTS 1143 (1309)
Q Consensus      1101 G~~~~~al~~~HAftGcDtts-~f~g~gK~~~~K~l~~~~~~q~ 1143 (1309)
                      |-. -.-++-+=+++|||..+ .+.|+|.++|+|+++++..+-.
T Consensus       234 gl~-~~q~id~~~L~GsDy~p~GVpGIG~KtA~kLl~~~gsle~  276 (363)
T 3ory_A          234 GIT-LENLIDIGILLGTDYNPDGFEGIGPKKALQLVKAYGGIEK  276 (363)
T ss_dssp             TCC-HHHHHHHHHHHCBTTBTTCSTTCCHHHHHHHHHHHTSSTT
T ss_pred             CcC-HHHHHHHHHHhCCCCCCCCCCCcCHHHHHHHHHHcCCHHH
Confidence            853 33467788899999999 9999999999999998766543

>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*

Probab=95.80  E-value=0.0062  Score=77.62  Aligned_cols=98  Identities=19%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      .|||-.|-.=+..+..+|. .|+|.|.|.|.+.+.-   +.      ..+|..  +|   ..|+...+.+.+|-. -.-+
T Consensus       116 ~EADD~iatLa~~~~~~G~-~v~IvS~DkDllql~~---~~------v~~~~~--~g---~~~~~~~v~~~~gv~-p~q~  179 (832)
T 1bgx_T          116 YEADDVLASLAKKAEKEGY-EVRILTADKDLYQLLS---DR------IHVLHP--EG---YLITPAWLWEKYGLR-PDQW  179 (832)
T ss_dssp             SCHHHHHHHHHHHHHHHTC-CBCCCCSSTTCCTTCC---TT------BCBCCS--SS---CCBCSTTHHHHTCCC-GGGT
T ss_pred             ccHHHHHHHHHHHHHHcCC-eEEEEeCCCChhhcCc---CC------EEEEeC--CC---cEEcHHHHHHHHCcC-HHHH
Confidence            4999988777777777886 5668899999988751   11      122322  33   568888999999843 2347


Q ss_pred             cccccccC--CcccccccccchhhHhhhhhccchHH
Q psy7142        1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVT 1142 (1309)
Q Consensus      1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q 1142 (1309)
                      +-+-+++|  ||..+...|+|.++|.|+++.+..+.
T Consensus       180 id~~~L~GD~sDnipGVpGIG~KtA~kLl~~~gsle  215 (832)
T 1bgx_T          180 ADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLE  215 (832)
T ss_dssp             TTTTTSSCCSSSCCCCCCCSSSCTTTTTGGGTTSSC
T ss_pred             HHHHHhcCCccccCCCCCCcCchHHHHHHHHCCCHH
Confidence            78899999  99999999999999999999876653

>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A

Probab=95.70  E-value=0.015  Score=65.68  Aligned_cols=109  Identities=15%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             cccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEEccCCCceeeeehhHHHHhhcccccccc
Q psy7142        1029 EEADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVSLNYGKKQRFFAAHEIAVNLGTEKSVAL 1108 (1309)
Q Consensus      1029 EEADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~~g~g~~~r~i~i~~i~~~lG~~~~~al 1108 (1309)
                      -|||-.|-.=|..+..+|. .|+|.|.|-|.+-|.-   +.      ..+| .++   ..+.++...+.+.+|-.--.-+
T Consensus       126 ~EADDviatLa~~~~~~G~-~v~IvS~DkDl~Qlv~---~~------v~v~-~~~---~~~~~~~~~v~ek~Gv~p~~q~  191 (290)
T 1exn_A          126 VEADDMAAYIVKLIGHLYD-HVWLISTDGDWDTLLT---DK------VSRF-SFT---TRREYHLRDMYEHHNVDDVEQF  191 (290)
T ss_dssp             BCHHHHHHHHHHHHGGGSS-CEEEECSCGGGGGGCC---SS------EEEE-ETT---TTEEECGGGHHHHHSSSSHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCC-cEEEEeCCCChhhcCC---CC------EEEE-ECC---CCEEEcHHHHHHHcCCCHHHHH
Confidence            3899988777777777777 6778999999776641   11      1233 222   5577899999999984321256


Q ss_pred             cccccccC--CcccccccccchhhHhhhhhccchHHHHHHHhcCC
Q psy7142        1109 RGFHAFSG--CDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAISKP 1151 (1309)
Q Consensus      1109 ~~~HAftG--cDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l~~~ 1151 (1309)
                      +-+.|+.|  ||..+...|+|.++|.|+++++-.+-..+..+...
T Consensus       192 iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~gsle~i~~~~~~~  236 (290)
T 1exn_A          192 ISLKAIMGDLGDNIRGVEGIGAKRGYNIIREFGNVLDIIDQLPLP  236 (290)
T ss_dssp             HHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHHCSHHHHHHHCSCS
T ss_pred             HHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHcCCHHHHHHHHHHh
Confidence            77889999  99999999999999999999998887777776543

>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*

Probab=94.28  E-value=0.022  Score=65.60  Aligned_cols=102  Identities=16%  Similarity=0.104  Sum_probs=73.2

Q ss_pred             ccchHHHHHHHHHHhcCCeeEEEEecCCCeeeehhhhhhhhhccCccceEEE--cc--CCCceeeeehhHHHHhhccccc
Q psy7142        1030 EADGRIILHIRDAVLQGAKKVLVRTVDTDVAVLAISFYFELKNYGLEELFVS--LN--YGKKQRFFAAHEIAVNLGTEKS 1105 (1309)
Q Consensus      1030 EADTrIilHa~~a~~~g~~~vvI~t~DTDVlVi~l~~~~~l~~~~~~~l~~~--~g--~g~~~r~i~i~~i~~~lG~~~~ 1105 (1309)
                      |||-.|-.=    +..|. .++|.|.|+|++++..           ..++..  +.  .+...+.|+...+.+.+|-. -
T Consensus       157 EADd~ia~L----a~~g~-v~~i~s~D~D~l~~~~-----------~~v~~~~~~~~~~~~~~~~~~~~~v~~~~gl~-~  219 (341)
T 3q8k_A          157 EAEASCAAL----VKAGK-VYAAATEDMDCLTFGS-----------PVLMRHLTASEAKKLPIQEFHLSRILQELGLN-Q  219 (341)
T ss_dssp             CHHHHHHHH----HHTTS-SSEEECSCTHHHHTTC-----------SEEEESCCCCSSCCCEEEEEEHHHHHHHHTCC-H
T ss_pred             cHHHHHHHH----HhcCC-eEEEEcCCccccccCC-----------cEEEEcccccccCCCceEEEcHHHHHHHhCCC-H
Confidence            899876432    23454 5556799999988862           123322  21  22346889999999999853 3


Q ss_pred             ccccccccccCCcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1106 VALRGFHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1106 ~al~~~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      .-++-+=+++|||.+..+.|+|.++|+|+++.+..+...+..+
T Consensus       220 ~q~id~~~L~G~D~~~gipGiG~KtA~kll~~~gsle~i~~~~  262 (341)
T 3q8k_A          220 EQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRL  262 (341)
T ss_dssp             HHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCSHHHHHHHS
T ss_pred             HHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHcCCHHHHHHHH
Confidence            3467788999999999999999999999999888776555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1309
d1rxwa1	105	Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc	82.09

>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: SAM domain-like
superfamily: 5' to 3' exonuclease, C-terminal subdomain
family: 5' to 3' exonuclease, C-terminal subdomain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.09  E-value=0.24  Score=45.33  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=32.5

Q ss_pred             cccccCCcccccccccchhhHhhhhhccchHHHHHHHh
Q psy7142        1111 FHAFSGCDTVSTFAFHGKQTAWKTWNSCDYVTSAFVAI 1148 (1309)
Q Consensus      1111 ~HAftGcDtts~f~g~gK~~~~K~l~~~~~~q~~f~~l 1148 (1309)
                      |=|+.|||.++...|+|-++|+|++++|..+-..+..+
T Consensus         9 ~~~L~GsDn~pGV~GIG~ktA~kli~~~gsle~i~~~~   46 (105)
T d1rxwa1           9 IAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKAL   46 (105)
T ss_dssp             HHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHH
T ss_pred             HHHHhCCCCCCCCCCcCHHHHHHHHHHhCCHHHHHHHH
Confidence            44789999999999999999999999988876655554