Psyllid ID: psy7171

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPSA
Secondary Structure (PSIPRED)
ccEEEEEEcccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEHccccHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHcccccccccccccc
Coil and Loop (DISEMBL)
MLGVVGLRMGDDHLAIACWlfpvplrlseindvafinpaNVVFVYMLVRELvdgdkidseSQLQAVVLTCLYLSYSymgneisyplkpflvedCKEKFWDRCLHIVNNMSSSmlrinaepgfFTEIFTELKacgtstpstglapsa
Flexible Loop (DISEMBL)
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKacgtstpstglapsa
Low Complexity Region (SEG)
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPSA
Disordered region (IsUnstruct)
***VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG************
Disordered Region (DISOPRED)
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTE*****************
Disordered Region (DISEMBL)
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG************
Disordered Region (DISPRO)
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKAC*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAPSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
O35926	369	Cyclin-dependent kinase 5	yes	N/A	0.821	0.325	0.591	4e-37
Q28199	307	Cyclin-dependent kinase 5	no	N/A	0.767	0.364	0.626	1e-36
P61810	307	Cyclin-dependent kinase 5	no	N/A	0.767	0.364	0.626	1e-36
P61809	307	Cyclin-dependent kinase 5	no	N/A	0.767	0.364	0.626	1e-36
Q15078	307	Cyclin-dependent kinase 5	yes	N/A	0.767	0.364	0.626	1e-36
Q4KYY2	307	Cyclin-dependent kinase 5	N/A	N/A	0.767	0.364	0.617	1e-35
Q13319	367	Cyclin-dependent kinase 5	no	N/A	0.753	0.299	0.609	2e-35
Q22695	356	Cyclin-dependent kinase 5	yes	N/A	0.856	0.351	0.472	5e-29

>sp|O35926|CD5R2_MOUSE Cyclin-dependent kinase 5 activator 2 OS=Mus musculus GN=Cdk5r2 PE=3 SV=2

 Score =  153 bits (386), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/120 (59%), Positives = 89/120 (74%)

Query: 25  LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISY 84
           L L    D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISY
Sbjct: 220 LLLQGWQDQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISY 279

Query: 85  PLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAP 144
           PLKPFLVE  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G +  STG  P
Sbjct: 280 PLKPFLVEPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPP 339

Activator of CDK5/TPKII.
Mus musculus (taxid: 10090)

>sp|Q28199|CD5R1_BOVIN Cyclin-dependent kinase 5 activator 1 OS=Bos taurus GN=CDK5R1 PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 90/115 (78%), Gaps = 3/115 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
           YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Bos taurus (taxid: 9913)

>sp|P61810|CD5R1_RAT Cyclin-dependent kinase 5 activator 1 OS=Rattus norvegicus GN=Cdk5r1 PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 90/115 (78%), Gaps = 3/115 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
           YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Rattus norvegicus (taxid: 10116)

>sp|P61809|CD5R1_MOUSE Cyclin-dependent kinase 5 activator 1 OS=Mus musculus GN=Cdk5r1 PE=1 SV=1

 Score =  151 bits (382), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 90/115 (78%), Gaps = 3/115 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
           YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Mus musculus (taxid: 10090)

>sp|Q15078|CD5R1_HUMAN Cyclin-dependent kinase 5 activator 1 OS=Homo sapiens GN=CDK5R1 PE=1 SV=1

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 90/115 (78%), Gaps = 3/115 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
           YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct: 236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Homo sapiens (taxid: 9606)

>sp|Q4KYY2|CD5R1_SPECI Cyclin-dependent kinase 5 activator 1 OS=Spermophilus citellus GN=CDK5R1 PE=2 SV=1

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/115 (61%), Positives = 89/115 (77%), Gaps = 3/115 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
           Y+GNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT+ F++LK
Sbjct: 236 YVGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQAFSDLK 290

p35 is a neuron specific activator of CDK5. The complex p35/CDK5 is required for neurite outgrowth and cortical lamination. Involved in dendritic spine morphogenesis by mediating the EFNA1-EPHA4 signaling. Activator of TPKII.

Spermophilus citellus (taxid: 9997)

>sp|Q13319|CD5R2_HUMAN Cyclin-dependent kinase 5 activator 2 OS=Homo sapiens GN=CDK5R2 PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 84/110 (76%)

Query: 25  LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISY 84
           L L    D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISY
Sbjct: 220 LLLQGWQDQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISY 279

Query: 85  PLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 134
           PLKPFLVE  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G
Sbjct: 280 PLKPFLVEPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEG 329

Activator of CDK5/TPKII.

Homo sapiens (taxid: 9606)

>sp|Q22695|CD5R1_CAEEL Cyclin-dependent kinase 5 activator 1 OS=Caenorhabditis elegans GN=cdka-1 PE=2 SV=2

 Score =  126 bits (316), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 90/129 (69%), Gaps = 4/129 (3%)

Query: 12  DHLAIACWLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDK--IDSESQLQAVV 67
           D   +  WL  V   L L    D+AFINPAN+VF+++LVR+++  ++  I +  +L A +
Sbjct: 227 DPAHLVTWLRSVDRSLLLQGWQDIAFINPANLVFIFLLVRDVLPDERHLIHTLEELHAWI 286

Query: 68  LTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIF 127
           L+CLY+SYSYMGNEISYPLKPFL+ + +  FW+RC+ +V + S  ML +N+   FF+E+F
Sbjct: 287 LSCLYVSYSYMGNEISYPLKPFLIGNDRNTFWNRCVAMVTSHSRQMLLLNSSSTFFSEVF 346

Query: 128 TELKACGTS 136
           T+LK C +S
Sbjct: 347 TDLKHCSSS 355

Activator of a CDK5/TPKII-like kinase.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
380029934	606	PREDICTED: uncharacterized protein LOC10	0.863	0.207	0.736	1e-48
350402354	360	PREDICTED: cyclin-dependent kinase 5 act	0.897	0.363	0.673	1e-46
328780175	360	PREDICTED: cyclin-dependent kinase 5 act	0.897	0.363	0.673	1e-46
118788678	164	AGAP008533-PA [Anopheles gambiae str. PE	0.835	0.743	0.768	3e-46
195146852	441	GL18974 [Drosophila persimilis] gi|19410	0.821	0.272	0.747	3e-46
383848540	360	PREDICTED: cyclin-dependent kinase 5 act	0.821	0.333	0.776	3e-46
157107174	496	cyclin-dependent kinase 5 activator [Aed	0.821	0.241	0.719	3e-46
340711405	360	PREDICTED: cyclin-dependent kinase 5 act	0.897	0.363	0.666	4e-46
5051998	474	Cdk5 activator-like protein [Drosophila	0.821	0.253	0.747	5e-46
24583339	472	Cdk5 activator-like protein, isoform A [	0.821	0.254	0.747	5e-46

>gi|380029934|ref|XP_003698618.1| PREDICTED: uncharacterized protein LOC100863474 [Apis florea]

 Score =  197 bits (500), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 98/133 (73%), Positives = 106/133 (79%), Gaps = 7/133 (5%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    DVAFINPANVVF+YMLVRELVDGD+  SE +LQA VLTCLYLSYS
Sbjct: 462 WLRTVDRSLLLQGWQDVAFINPANVVFIYMLVRELVDGDEA-SERELQATVLTCLYLSYS 520

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT- 135
           YMGNEISYPLKPFL+ED K+KFWDRCL IVN +SS MLRIN+EPGFFTE+FTELKACG  
Sbjct: 521 YMGNEISYPLKPFLIEDSKDKFWDRCLLIVNRLSSEMLRINSEPGFFTEVFTELKACGAG 580

Query: 136 ---STPSTGLAPS 145
              S P TGL  S
Sbjct: 581 DRGSLPGTGLERS 593

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402354|ref|XP_003486455.1| PREDICTED: cyclin-dependent kinase 5 activator 1-like [Bombus impatiens]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 109/147 (74%), Gaps = 16/147 (10%)

Query: 3   GVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQ 62
            V+ LR  D  L +  W            DVAFINPANVVF+YMLVRELVDGD+  SE +
Sbjct: 213 AVMWLRTVDRSLLLQGW-----------QDVAFINPANVVFIYMLVRELVDGDEA-SERE 260

Query: 63  LQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGF 122
           LQA VLTCLYLSYSYMGNEISYPLKPFL+ED K+KFWDRCL IVN +SS MLRIN+EPGF
Sbjct: 261 LQATVLTCLYLSYSYMGNEISYPLKPFLIEDSKDKFWDRCLLIVNRLSSEMLRINSEPGF 320

Query: 123 FTEIFTELKACGT----STPSTGLAPS 145
           FTE+FTELKACG     S P TGL  S
Sbjct: 321 FTEVFTELKACGAGDRGSLPGTGLERS 347

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780175|ref|XP_394967.4| PREDICTED: cyclin-dependent kinase 5 activator 1 [Apis mellifera]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 99/147 (67%), Positives = 109/147 (74%), Gaps = 16/147 (10%)

Query: 3   GVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQ 62
            V+ LR  D  L +  W            DVAFINPANVVF+YMLVRELVDGD+  SE +
Sbjct: 213 AVMWLRTVDRSLLLQGW-----------QDVAFINPANVVFIYMLVRELVDGDEA-SERE 260

Query: 63  LQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGF 122
           LQA VLTCLYLSYSYMGNEISYPLKPFL+ED K+KFWDRCL IVN +SS MLRIN+EPGF
Sbjct: 261 LQATVLTCLYLSYSYMGNEISYPLKPFLIEDSKDKFWDRCLLIVNRLSSEMLRINSEPGF 320

Query: 123 FTEIFTELKACGT----STPSTGLAPS 145
           FTE+FTELKACG     S P TGL  S
Sbjct: 321 FTEVFTELKACGAGDRGSLPGTGLERS 347

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118788678|ref|XP_316905.3| AGAP008533-PA [Anopheles gambiae str. PEST] gi|116122861|gb|EAA12555.4| AGAP008533-PA [Anopheles gambiae str. PEST]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/125 (76%), Positives = 104/125 (83%), Gaps = 3/125 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    DVAFINPANVVFVYMLVRELVDG++   E++LQA VLTCLYLSYS
Sbjct: 32  WLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRELVDGEET-KEAELQAAVLTCLYLSYS 90

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
           YMGNEISYPLKPFLVED K+KFWDRCL IVN +SS+MLRINAEPGFFTEIFTELKACG S
Sbjct: 91  YMGNEISYPLKPFLVEDSKDKFWDRCLLIVNRLSSNMLRINAEPGFFTEIFTELKACGMS 150

Query: 137 TPSTG 141
           T +  
Sbjct: 151 TNANA 155

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195146852|ref|XP_002014398.1| GL18974 [Drosophila persimilis] gi|194106351|gb|EDW28394.1| GL18974 [Drosophila persimilis]

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 92/123 (74%), Positives = 100/123 (81%), Gaps = 3/123 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    DVAFINPANVVFVYMLVR+LVDG++   ES LQA VLTCLYLSYS
Sbjct: 311 WLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRDLVDGEE-SKESDLQASVLTCLYLSYS 369

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
           YMGNEISYPLKPFLVED K+KFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG  
Sbjct: 370 YMGNEISYPLKPFLVEDSKDKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQY 429

Query: 137 TPS 139
            PS
Sbjct: 430 HPS 432

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848540|ref|XP_003699907.1| PREDICTED: cyclin-dependent kinase 5 activator 1-like [Megachile rotundata]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/125 (77%), Positives = 103/125 (82%), Gaps = 5/125 (4%)

Query: 25  LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISY 84
           L L    DVAFINPANVVFVYMLVRELVDGD+  SE +LQA VLTCLYLSYSYMGNEISY
Sbjct: 224 LLLQGWQDVAFINPANVVFVYMLVRELVDGDEA-SERELQATVLTCLYLSYSYMGNEISY 282

Query: 85  PLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT----STPST 140
           PLKPFLVED K+KFWDRCL IVN +SS MLRIN+EPGFFTEIFTELKACG     S P +
Sbjct: 283 PLKPFLVEDSKDKFWDRCLLIVNRLSSKMLRINSEPGFFTEIFTELKACGAGDRGSLPGS 342

Query: 141 GLAPS 145
           GL  S
Sbjct: 343 GLERS 347

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107174|ref|XP_001649657.1| cyclin-dependent kinase 5 activator [Aedes aegypti] gi|108879638|gb|EAT43863.1| AAEL004717-PA [Aedes aegypti]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/132 (71%), Positives = 104/132 (78%), Gaps = 12/132 (9%)

Query: 3   GVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQ 62
            V+ LR  D  L +  W            DVAFINPANVVFVYMLVRELVDG++   E++
Sbjct: 360 AVMWLRAVDRSLLLQGW-----------QDVAFINPANVVFVYMLVRELVDGEET-KEAE 407

Query: 63  LQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGF 122
           LQA VLTCLYLSYSYMGNEISYPLKPFLVED K+KFWDRCL IVN +SS+MLRINAEPGF
Sbjct: 408 LQAAVLTCLYLSYSYMGNEISYPLKPFLVEDSKDKFWDRCLLIVNRLSSNMLRINAEPGF 467

Query: 123 FTEIFTELKACG 134
           FTEIFTELKACG
Sbjct: 468 FTEIFTELKACG 479

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711405|ref|XP_003394266.1| PREDICTED: cyclin-dependent kinase 5 activator 1-like [Bombus terrestris]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 108/147 (73%), Gaps = 16/147 (10%)

Query: 3   GVVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQ 62
            V+ LR  D  L +  W            DVAFINPANVVF+YMLVRELVDGD+  SE +
Sbjct: 213 AVMWLRTVDRSLLLQGW-----------QDVAFINPANVVFIYMLVRELVDGDEA-SERE 260

Query: 63  LQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGF 122
           LQ  VLTCLYLSYSYMGNEISYPLKPFL+ED K+KFWDRCL IVN +SS MLRIN+EPGF
Sbjct: 261 LQVTVLTCLYLSYSYMGNEISYPLKPFLIEDSKDKFWDRCLLIVNRLSSEMLRINSEPGF 320

Query: 123 FTEIFTELKACGT----STPSTGLAPS 145
           FTE+FTELKACG     S P TGL  S
Sbjct: 321 FTEVFTELKACGAGDRGSLPGTGLERS 347

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|5051998|gb|AAD38395.1| Cdk5 activator-like protein [Drosophila melanogaster]

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/123 (74%), Positives = 99/123 (80%), Gaps = 3/123 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    DVAFINPANVVFVYMLVRELV G++   ES LQA VLTCLYLSYS
Sbjct: 345 WLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRELVSGEE-SKESDLQASVLTCLYLSYS 403

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
           YMGNEISYPLKPFLVED KEKFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG  
Sbjct: 404 YMGNEISYPLKPFLVEDSKEKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQY 463

Query: 137 TPS 139
            P+
Sbjct: 464 HPT 466

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24583339|ref|NP_523535.2| Cdk5 activator-like protein, isoform A [Drosophila melanogaster] gi|442627197|ref|NP_001260320.1| Cdk5 activator-like protein, isoform B [Drosophila melanogaster] gi|7110520|gb|AAF36977.1|AF231134_1 cyclin-dependent kinase 5 regulatory subunit [Drosophila melanogaster] gi|7297654|gb|AAF52906.1| Cdk5 activator-like protein, isoform A [Drosophila melanogaster] gi|440213638|gb|AGB92855.1| Cdk5 activator-like protein, isoform B [Drosophila melanogaster]

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 92/123 (74%), Positives = 99/123 (80%), Gaps = 3/123 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    DVAFINPANVVFVYMLVRELV G++   ES LQA VLTCLYLSYS
Sbjct: 343 WLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRELVSGEE-SKESDLQASVLTCLYLSYS 401

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
           YMGNEISYPLKPFLVED KEKFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG  
Sbjct: 402 YMGNEISYPLKPFLVEDSKEKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQY 461

Query: 137 TPS 139
            P+
Sbjct: 462 HPT 464

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
FB|FBgn0027491	474	Cdk5alpha "Cdk5 activator-like	0.821	0.253	0.747	4.5e-43
ZFIN|ZDB-GENE-060503-468	317	si:dkeyp-92c9.2 "si:dkeyp-92c9	0.794	0.365	0.652	1.3e-36
UNIPROTKB|Q28199	307	CDK5R1 "Cyclin-dependent kinas	0.767	0.364	0.626	6.5e-35
UNIPROTKB|Q15078	307	CDK5R1 "Cyclin-dependent kinas	0.767	0.364	0.626	6.5e-35
UNIPROTKB|F2Z529	307	CDK5R1 "Uncharacterized protei	0.767	0.364	0.626	6.5e-35
MGI|MGI:101764	307	Cdk5r1 "cyclin-dependent kinas	0.767	0.364	0.626	6.5e-35
RGD|629472	307	Cdk5r1 "cyclin-dependent kinas	0.767	0.364	0.626	6.5e-35
UNIPROTKB|E2RJ45	307	CDK5R1 "Uncharacterized protei	0.767	0.364	0.617	8.3e-35
MGI|MGI:1330828	369	Cdk5r2 "cyclin-dependent kinas	0.828	0.327	0.595	1.1e-34
RGD|1562530	289	Cdk5r2 "cyclin-dependent kinas	0.828	0.418	0.595	1.1e-34

FB|FBgn0027491 Cdk5alpha "Cdk5 activator-like protein" [Drosophila melanogaster (taxid:7227)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 92/123 (74%), Positives = 99/123 (80%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    DVAFINPANVVFVYMLVRELV G++   ES LQA VLTCLYLSYS
Sbjct:   345 WLRAVDRSLLLQGWQDVAFINPANVVFVYMLVRELVSGEE-SKESDLQASVLTCLYLSYS 403

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
             YMGNEISYPLKPFLVED KEKFWDRCL IVN +S  ML+INAEPGFFTE+FTELK+CG  
Sbjct:   404 YMGNEISYPLKPFLVEDSKEKFWDRCLVIVNKLSDKMLKINAEPGFFTEVFTELKSCGQY 463

Query:   137 TPS 139
              P+
Sbjct:   464 HPT 466

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0030426 "growth cone" evidence=IDA

GO:0007409 "axonogenesis" evidence=IGI;IMP

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IPI

GO:0030424 "axon" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

GO:0070059 "intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress" evidence=IGI

ZFIN|ZDB-GENE-060503-468 si:dkeyp-92c9.2 "si:dkeyp-92c9.2" [Danio rerio (taxid:7955)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 77/118 (65%), Positives = 92/118 (77%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D AF+ PANVVFVYML R++VDGD + SE +LQA++LTCLYLSYS
Sbjct:   187 WLRAVDRSLLLQGWQDQAFVTPANVVFVYMLCRDVVDGDSVSSEHELQAILLTCLYLSYS 246

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 134
             YMGNEISYPLKPFLVE  KE FWDRCL I++  S+ MLRINA+P FFT++F +LK+ G
Sbjct:   247 YMGNEISYPLKPFLVEAGKEAFWDRCLAIIDVTSAKMLRINADPHFFTQVFADLKSEG 304

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

UNIPROTKB|Q28199 CDK5R1 "Cyclin-dependent kinase 5 activator 1" [Bos taurus (taxid:9913)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 72/115 (62%), Positives = 90/115 (78%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct:   177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
             YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0045296 "cadherin binding" evidence=ISS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISS

GO:0007420 "brain development" evidence=ISS

GO:0007413 "axonal fasciculation" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0030426 "growth cone" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0030182 "neuron differentiation" evidence=ISS

GO:0043292 "contractile fiber" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0007158 "neuron cell-cell adhesion" evidence=ISS

GO:0001764 "neuron migration" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

UNIPROTKB|Q15078 CDK5R1 "Cyclin-dependent kinase 5 activator 1" [Homo sapiens (taxid:9606)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 72/115 (62%), Positives = 90/115 (78%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct:   177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
             YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045296 "cadherin binding" evidence=ISS

GO:0007158 "neuron cell-cell adhesion" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0030425 "dendrite" evidence=ISS

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISS

GO:0043197 "dendritic spine" evidence=ISS

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0009790 "embryo development" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0031594 "neuromuscular junction" evidence=ISS

GO:0043292 "contractile fiber" evidence=ISS

GO:0030182 "neuron differentiation" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0030426 "growth cone" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0043025 "neuronal cell body" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISS

GO:0007411 "axon guidance" evidence=ISS;TAS

GO:0007413 "axonal fasciculation" evidence=ISS

GO:0007420 "brain development" evidence=ISS;NAS

GO:0001764 "neuron migration" evidence=ISS

GO:0045664 "regulation of neuron differentiation" evidence=NAS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISS

GO:0019901 "protein kinase binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IDA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IDA

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0014069 "postsynaptic density" evidence=ISS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISS

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=TAS

GO:0004672 "protein kinase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|F2Z529 CDK5R1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 72/115 (62%), Positives = 90/115 (78%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct:   177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
             YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007158 "neuron cell-cell adhesion" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

MGI|MGI:101764 Cdk5r1 "cyclin-dependent kinase 5, regulatory subunit 1 (p35)" [Mus musculus (taxid:10090)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 72/115 (62%), Positives = 90/115 (78%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct:   177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
             YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0001764 "neuron migration" evidence=IGI;IDA

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0007049 "cell cycle" evidence=ISO

GO:0007158 "neuron cell-cell adhesion" evidence=IMP

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=ISO

GO:0007411 "axon guidance" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0008092 "cytoskeletal protein binding" evidence=TAS

GO:0009790 "embryo development" evidence=ISO

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016301 "kinase activity" evidence=ISO

GO:0016310 "phosphorylation" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=ISO

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=ISO;IMP;TAS

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021549 "cerebellum development" evidence=IGI;IMP

GO:0021722 "superior olivary nucleus maturation" evidence=IGI

GO:0021766 "hippocampus development" evidence=IGI

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=IMP

GO:0021819 "layer formation in cerebral cortex" evidence=IGI

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0030517 "negative regulation of axon extension" evidence=IGI

GO:0031175 "neuron projection development" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IDA

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0043292 "contractile fiber" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISO

GO:0045296 "cadherin binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046875 "ephrin receptor binding" evidence=ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IMP

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IMP

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=ISO;TAS

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IDA

RGD|629472 Cdk5r1 "cyclin-dependent kinase 5, regulatory subunit 1 (p35)" [Rattus norvegicus (taxid:10116)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 72/115 (62%), Positives = 90/115 (78%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct:   177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 235

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
             YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0001764 "neuron migration" evidence=ISO;ISS

GO:0004693 "cyclin-dependent protein serine/threonine kinase activity" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0007049 "cell cycle" evidence=IDA

GO:0007158 "neuron cell-cell adhesion" evidence=ISO;ISS

GO:0007213 "G-protein coupled acetylcholine receptor signaling pathway" evidence=IDA

GO:0007411 "axon guidance" evidence=ISO;ISS

GO:0007413 "axonal fasciculation" evidence=ISO;ISS

GO:0007420 "brain development" evidence=IEP;ISO;ISS

GO:0009790 "embryo development" evidence=IDA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IDA;TAS

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=ISO;IDA

GO:0018105 "peptidyl-serine phosphorylation" evidence=ISO

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA;ISO

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0021549 "cerebellum development" evidence=IEA;ISO

GO:0021722 "superior olivary nucleus maturation" evidence=IEA;ISO

GO:0021766 "hippocampus development" evidence=IEA;ISO

GO:0021799 "cerebral cortex radially oriented cell migration" evidence=ISO

GO:0021819 "layer formation in cerebral cortex" evidence=IEA;ISO

GO:0030182 "neuron differentiation" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030517 "negative regulation of axon extension" evidence=ISO

GO:0031175 "neuron projection development" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA;ISO

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA;ISO

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043292 "contractile fiber" evidence=IDA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IDA

GO:0043539 "protein serine/threonine kinase activator activity" evidence=ISO;IDA

GO:0045296 "cadherin binding" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046875 "ephrin receptor binding" evidence=IPI

GO:0048013 "ephrin receptor signaling pathway" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0048675 "axon extension" evidence=TAS

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=ISO;ISS

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA;ISO

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA;ISO

UNIPROTKB|E2RJ45 CDK5R1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 71/115 (61%), Positives = 90/115 (78%)

Query:    19 WLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
             WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQA++LTCLYLSYS
Sbjct:   177 WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAILLTCLYLSYS 235

Query:    77 YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELK 131
             YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK
Sbjct:   236 YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLK 290

GO:0090314 "positive regulation of protein targeting to membrane" evidence=IEA

GO:0070507 "regulation of microtubule cytoskeleton organization" evidence=IEA

GO:0061001 "regulation of dendritic spine morphogenesis" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0033136 "serine phosphorylation of STAT3 protein" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0021819 "layer formation in cerebral cortex" evidence=IEA

GO:0021766 "hippocampus development" evidence=IEA

GO:0021722 "superior olivary nucleus maturation" evidence=IEA

GO:0021549 "cerebellum development" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018107 "peptidyl-threonine phosphorylation" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA

GO:0007413 "axonal fasciculation" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007158 "neuron cell-cell adhesion" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

MGI|MGI:1330828 Cdk5r2 "cyclin-dependent kinase 5, regulatory subunit 2 (p39)" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 72/121 (59%), Positives = 90/121 (74%)

Query:    25 LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISY 84
             L L    D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISY
Sbjct:   220 LLLQGWQDQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISY 279

Query:    85 PLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAP 144
             PLKPFLVE  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G +  STG  P
Sbjct:   280 PLKPFLVEPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPP 339

Query:   145 S 145
             S
Sbjct:   340 S 340

GO:0001764 "neuron migration" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=TAS

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IMP;TAS

GO:0021549 "cerebellum development" evidence=IGI

GO:0021722 "superior olivary nucleus maturation" evidence=IGI

GO:0021766 "hippocampus development" evidence=IGI

GO:0021819 "layer formation in cerebral cortex" evidence=IGI

GO:0045860 "positive regulation of protein kinase activity" evidence=IGI

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=IDA

GO:0071902 "positive regulation of protein serine/threonine kinase activity" evidence=TAS

RGD|1562530 Cdk5r2 "cyclin-dependent kinase 5, regulatory subunit 2 (p39)" [Rattus norvegicus (taxid:10116)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 72/121 (59%), Positives = 90/121 (74%)

Query:    25 LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISY 84
             L L    D AFI PAN+VFVY+L RE + GD++ S ++LQA  LTCLYL+YSYMGNEISY
Sbjct:   141 LLLQGWQDQAFITPANLVFVYLLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISY 200

Query:    85 PLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPSTGLAP 144
             PLKPFLVE  KE+FW RCL ++  +S  MLR+NA+P FFT++F +LK  G +  STG  P
Sbjct:   201 PLKPFLVEPDKERFWQRCLRLIQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASTGGPP 260

Query:   145 S 145
             S
Sbjct:   261 S 261

GO:0001764 "neuron migration" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0016533 "cyclin-dependent protein kinase 5 holoenzyme complex" evidence=IEA

GO:0016534 "cyclin-dependent protein kinase 5 activator activity" evidence=IEA;ISO

GO:0021549 "cerebellum development" evidence=ISO

GO:0021722 "superior olivary nucleus maturation" evidence=ISO

GO:0021766 "hippocampus development" evidence=ISO

GO:0021819 "layer formation in cerebral cortex" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0045956 "positive regulation of calcium ion-dependent exocytosis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35926	CD5R2_MOUSE	No assigned EC number	0.5916	0.8219	0.3252	yes	N/A
Q15078	CD5R1_HUMAN	No assigned EC number	0.6260	0.7671	0.3648	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	146
pfam03261	314	pfam03261, CDK5_activator, Cyclin-dependent kinase	5e-66

>gnl|CDD|217461 pfam03261, CDK5_activator, Cyclin-dependent kinase 5 activator protein

 Score =  202 bits (516), Expect = 5e-66
 Identities = 77/120 (64%), Positives = 95/120 (79%), Gaps = 3/120 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D AFI PANVVFVY+L R+++ G+ + +E +LQA +LTCLYLSYS
Sbjct: 195 WLRSVDRSLLLQGWQDQAFITPANVVFVYLLCRDVLSGE-VATEHELQAWLLTCLYLSYS 253

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTS 136
           YMGNEISYPLKPFLVE+ KE FWDRCL I+N++SS MLRINA+P FFT++FT+LK  G+S
Sbjct: 254 YMGNEISYPLKPFLVENDKEAFWDRCLAIINSLSSKMLRINADPHFFTQVFTDLKNEGSS 313

Length = 314

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF03261	346	CDK5_activator: Cyclin-dependent kinase 5 activato	100.0
KOG3932|consensus	357		100.0

>PF03261 CDK5_activator: Cyclin-dependent kinase 5 activator protein; InterPro: IPR004944 These proteins are neuron specific activators of cyclin-dependent kinase 5 (CDK5) []

Probab=100.00  E-value=3.7e-80  Score=529.90  Aligned_cols=126  Identities=65%  Similarity=1.084  Sum_probs=104.0

Q ss_pred             CChhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcc
Q psy7171          11 DDHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKP   88 (146)
Q Consensus        11 ~d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKP   88 (146)
                      -|+.++|||||+||  ||||||||||||||||||||||||||+|++| ++||+||||+||||||||||||||||||||||
T Consensus       219 ~~~~~~vmWlR~vDRsLLlqgwqd~~fi~pan~vf~yml~r~~~~~~-~~~~~~l~~~~l~cly~sysy~gneisyplkp  297 (346)
T PF03261_consen  219 FSPGDVVMWLRAVDRSLLLQGWQDQAFINPANVVFVYMLCRDVVSGE-VSSERELQAIVLTCLYLSYSYMGNEISYPLKP  297 (346)
T ss_dssp             --THHHHHHHHHHHHHHHHTTS-SS-S--HHHHHHHHHHHHHHS-TT---SHHHHHHHHHHHHHHHHHHH-SSS---SGG
T ss_pred             CCccceEeehhhcCHHHHhccccccceeccchhhhhHHHHHHhhccc-cCCHHHHHHHHHHHHHHHhhhcCcccccccCC
Confidence            37899999999999  9999999999999999999999999999885 79999999999999999999999999999999


Q ss_pred             cccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcCCCC
Q psy7171          89 FLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTST  137 (146)
Q Consensus        89 FLve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~~~  137 (146)
                      ||||++||+||||||+|||++|+||||||+|||||||||+|||+||+.+
T Consensus       298 flv~~~~~~fw~~~~~~~~~~s~~ml~~n~~~~~ft~~~~~lk~~~~~~  346 (346)
T PF03261_consen  298 FLVEESKEAFWDRCLSIINRLSAKMLRINADPHFFTEVFTDLKNEGQSE  346 (346)
T ss_dssp             G--SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTT----
T ss_pred             eeecccHHHHHHHHHHHHHHhhHHHhhhcCCCchHHHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999999999999753

They form a heterodimer with the catalytic subunit (CDK5) [].; GO: 0016534 cyclin-dependent protein kinase 5 activator activity, 0016533 cyclin-dependent protein kinase 5 holoenzyme complex; PDB: 3O0G_D 1H4L_E 1UNH_D 1UNL_E 1UNG_E.

>KOG3932|consensus

Probab=100.00  E-value=1.1e-79  Score=526.42  Aligned_cols=126  Identities=62%  Similarity=1.067  Sum_probs=123.1

Q ss_pred             Chhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCccc
Q psy7171          12 DHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPF   89 (146)
Q Consensus        12 d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKPF   89 (146)
                      |..++|+|||+||  ||||||||||||||||||||||||||++++||++|++||||++||||||||||||||||||||||
T Consensus       221 dpgd~V~WlRsVDRSLLLQGWQD~aFInPANlVFvylLvRdvlsg~e~~s~~eLqA~~LtCLYlsYSYMGNEISYPLKPF  300 (357)
T KOG3932|consen  221 DPGDLVTWLRSVDRSLLLQGWQDQAFINPANLVFVYLLVRDVLSGEEIHSLEELQAWILTCLYLSYSYMGNEISYPLKPF  300 (357)
T ss_pred             CccchhHHHHhhhHHHHhhhccccccccchheehhhhhHHhhcCchhhccHHHHHHHHHHHHHHHHHhhcccccccccce
Confidence            7889999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcCCCC
Q psy7171          90 LVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTST  137 (146)
Q Consensus        90 Lve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~~~  137 (146)
                      |||++||+||||||.|||++|.+||+||||||||||||+|||+|+..+
T Consensus       301 LVe~dke~FWdRCl~~vn~lS~qML~lNadp~fFteVFtdLK~cs~~~  348 (357)
T KOG3932|consen  301 LVENDKETFWDRCLAMVNSLSRQMLLLNADPHFFTEVFTDLKNCSSSE  348 (357)
T ss_pred             eecccHHHHHHHHHHHHHHhhHHHhhhcCCCchHHHHHHHhhhcccch
Confidence            999999999999999999999999999999999999999999996543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
1ung_D	208	Structural Mechanism For The Inhibition Of Cdk5-P25		4e-37
3o0g_D	149	Crystal Structure Of Cdk5:p25 In Complex With An At		6e-37
1h4l_D	147	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		8e-37

>pdb|1UNG|D Chain D, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 208

Iteration: 1
 Score =  150 bits (378), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 93/128 (72%), Gaps = 12/128 (9%)
Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 76  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 123
Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 124 QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 183
Query: 124 TEIFTELK 131
           T++F++LK
Sbjct: 184 TQVFSDLK 191

>pdb|3O0G|D Chain D, Crystal Structure Of Cdk5:p25 In Complex With An Atp Analogue Length = 149

Iteration: 1
 Score =  149 bits (376), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 93/128 (72%), Gaps = 12/128 (9%)
Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 31  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 78
Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 79  QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 138
Query: 124 TEIFTELK 131
           T++F++LK
Sbjct: 139 TQVFSDLK 146

>pdb|1H4L|D Chain D, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 147

Iteration: 1
 Score =  149 bits (375), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 93/128 (72%), Gaps = 12/128 (9%)
Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 29  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 76
Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 77  QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 136
Query: 124 TEIFTELK 131
           T++F++LK
Sbjct: 137 TQVFSDLK 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
1unl_D	208	Cyclin-dependent kinase 5 activator 1; inhibitor,	1e-60
3o0g_D	149	Cyclin-dependent kinase 5 activator 1; kinase acti	3e-59

>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D* Length = 208

 Score =  184 bits (469), Expect = 1e-60
 Identities = 74/140 (52%), Positives = 94/140 (67%), Gaps = 12/140 (8%)

Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 76  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 123

Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 124 QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 183

Query: 124 TEIFTELKACGTSTPSTGLA 143
           T++F++LK          L 
Sbjct: 184 TQVFSDLKNESGQEDKKRLL 203

>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1h4l_D Length = 149

 Score =  179 bits (455), Expect = 3e-59
 Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 12/130 (9%)

Query: 4   VVGLRMGDDHLAIACWLFPVPLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQL 63
           V+ LR  D  L +  W            D  FI PANVVF+YML R+++  + + S+ +L
Sbjct: 31  VLWLRSVDRSLLLQGW-----------QDQGFITPANVVFLYMLCRDVISSE-VGSDHEL 78

Query: 64  QAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFF 123
           QAV+LTCLYLSYSYMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +F
Sbjct: 79  QAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYF 138

Query: 124 TEIFTELKAC 133
           T++F++LK  
Sbjct: 139 TQVFSDLKNE 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3o0g_D	149	Cyclin-dependent kinase 5 activator 1; kinase acti	100.0
1unl_D	208	Cyclin-dependent kinase 5 activator 1; inhibitor,	100.0

>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D

Probab=100.00  E-value=1.5e-85  Score=512.40  Aligned_cols=123  Identities=59%  Similarity=1.037  Sum_probs=119.9

Q ss_pred             CChhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcc
Q psy7171          11 DDHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKP   88 (146)
Q Consensus        11 ~d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKP   88 (146)
                      -++.++|||+|+||  ||||||||||||||||||||||||||+|+++ ++||+||||+||||||||||||||||||||||
T Consensus        25 ~~p~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~-~~se~eLqa~~lTCLYlsYSYmGNEISYPLKP  103 (149)
T 3o0g_D           25 LSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKP  103 (149)
T ss_dssp             CCTHHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCSHHHHHHHHHHHHHHHHHHHCSSSCCCSGG
T ss_pred             CCcchhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence            36789999999999  9999999999999999999999999999865 79999999999999999999999999999999


Q ss_pred             cccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcC
Q psy7171          89 FLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG  134 (146)
Q Consensus        89 FLve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~  134 (146)
                      ||||++||+|||||++|||++|+||||||+|||||||||+|||+||
T Consensus       104 Flv~~~k~~FW~rcl~iin~~S~~ML~iN~dp~~Ftevf~eLK~~~  149 (149)
T 3o0g_D          104 FLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNES  149 (149)
T ss_dssp             GCCCSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTC
T ss_pred             hhhcccHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999986

>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*

Probab=100.00  E-value=1.3e-82  Score=515.03  Aligned_cols=128  Identities=56%  Similarity=0.992  Sum_probs=120.4

Q ss_pred             CChhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcc
Q psy7171          11 DDHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKP   88 (146)
Q Consensus        11 ~d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKP   88 (146)
                      -+..++|||||+||  ||||||||||||||||||||||||||+|++| ++||+||||+||||||||||||||||||||||
T Consensus        70 ~~p~d~VmWLR~VDRsLLLQGWQD~aFI~PaNvVFvYmL~R~~v~~~-~~te~eLqa~vLTCLYlsYSYmGNEISYPLKP  148 (208)
T 1unl_D           70 LSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKP  148 (208)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGG
T ss_pred             CCccceehhHHhhhHHHHHccccccccccchhhhhHHHHHHHHcccc-cCCHHHHHHHHHHHHHHHHHhhCccccccCcc
Confidence            47889999999999  9999999999999999999999999999765 79999999999999999999999999999999


Q ss_pred             cccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcCCCCCC
Q psy7171          89 FLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGTSTPS  139 (146)
Q Consensus        89 FLve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~~~~~  139 (146)
                      ||||++||+|||||+.|||++|+||||||+|||||||||+|||+|+..+.+
T Consensus       149 Flve~~ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~eLK~~~~~~~~  199 (208)
T 1unl_D          149 FLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESGQEDK  199 (208)
T ss_dssp             GCCSSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTC-----
T ss_pred             eeecCCHHHHHHHHHHHHHhhchhhheecCCccHHHHHHHHHHhcccccch
Confidence            999999999999999999999999999999999999999999999987543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1unld_	150	a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human	8e-64

>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: CDK5 activator 1 (NCK5a, p25)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  190 bits (483), Expect = 8e-64
 Identities = 72/118 (61%), Positives = 90/118 (76%), Gaps = 3/118 (2%)

Query: 19  WLFPV--PLRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYS 76
           WL  V   L L    D  FI PANVVF+YML R+++  + + S+ +LQAV+LTCLYLSYS
Sbjct: 33  WLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYS 91

Query: 77  YMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACG 134
           YMGNEISYPLKPFLVE CKE FWDRCL ++N MSS ML+INA+P +FT++F++LK   
Sbjct: 92  YMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNES 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1unld_	150	CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens	100.0
d1ay7b_	89	Barstar (barnase inhibitor) {Bacillus amyloliquefa	82.38

>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: CDK5 activator 1 (NCK5a, p25)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-85  Score=508.76  Aligned_cols=124  Identities=58%  Similarity=1.025  Sum_probs=119.9

Q ss_pred             CChhhhhhhhcccc--ccccCCcccccccChhHHHHHHHHHhhhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcc
Q psy7171          11 DDHLAIACWLFPVP--LRLSEINDVAFINPANVVFVYMLVRELVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKP   88 (146)
Q Consensus        11 ~d~~~~v~WlR~VD--LLLQGWQD~~FI~PANvVFvYmL~rd~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKP   88 (146)
                      -+..++|+|+|+||  ||||||||||||||||||||||||||+|+++ ++||+||||++|||||||||||||||||||||
T Consensus        25 ~~p~d~v~WlR~VDRsLLLQGWQD~~Fi~PaNvVFvYmL~Re~v~~~-~~se~eLqa~vLtCLYlsYSYmGnEISYPLKP  103 (150)
T d1unld_          25 LSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSE-VGSDHELQAVLLTCLYLSYSYMGNEISYPLKP  103 (150)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTTSCSSCSCCHHHHHHHHHHHHHHSCTT-CCCHHHHHHHHHHHHHHHHHHHCSSSCCCSGG
T ss_pred             CCccchhhhHHhhhHHHHHhhhhhccccCccceeehHHHHHHhcCcc-ccCHHHHHHHHHHHHHHHHHhcCcccccCCcc
Confidence            36789999999999  9999999999999999999999999999876 69999999999999999999999999999999


Q ss_pred             cccccchhHhhhHHHHHHhhccccchhccCCcchhHHHHHHHHhcCC
Q psy7171          89 FLVEDCKEKFWDRCLHIVNNMSSSMLRINAEPGFFTEIFTELKACGT  135 (146)
Q Consensus        89 FLve~~ke~FW~rcl~Ii~~~S~~MLriNadp~fFTevF~eLK~~~~  135 (146)
                      ||||++||+|||||+.|||++|+||||||+|||||||||+|||++|.
T Consensus       104 FLve~~k~~FWdRCl~Iin~~S~kML~iN~dp~fFtevf~dLK~~g~  150 (150)
T d1unld_         104 FLVESCKEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSDLKNESG  150 (150)
T ss_dssp             GCCSSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTTC-
T ss_pred             eeecccHHHHHHHHHHHHHHHhHHHhhhcCCcchHHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999974

>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Barstar-like
superfamily: Barstar-related
family: Barstar-related
domain: Barstar (barnase inhibitor)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=82.38  E-value=0.74  Score=30.34  Aligned_cols=70  Identities=23%  Similarity=0.377  Sum_probs=43.3

Q ss_pred             hhcCCcCCCHHHHHHHHHHHHHHhhhccCccccccCcccccccchhHhhhHHHHHHhhccccchhc------cCCcchhH
Q psy7171          51 LVDGDKIDSESQLQAVVLTCLYLSYSYMGNEISYPLKPFLVEDCKEKFWDRCLHIVNNMSSSMLRI------NAEPGFFT  124 (146)
Q Consensus        51 ~v~~~~i~se~eLqa~vLTCLYLsYSYmGNEISYPLKPFLve~~ke~FW~rcl~Ii~~~S~~MLri------Nadp~fFT  124 (146)
                      +|++..|.|.++++..+-..|           ++|  .+- ..|-|+||| |+.=...+.-.+.-.      +.+|..|.
T Consensus         4 vidg~~i~~~~~~~~~~~~~l-----------~~p--~~~-G~N~DAl~D-~ltd~~~~P~~i~~~~~~~~~~~~~~~~~   68 (89)
T d1ay7b_           4 VINGEQIRSISDLHQTLKKEL-----------ALP--EYY-GENLDALWD-CLTGWVEYPLVLEWRQFEQSKQLTENGAE   68 (89)
T ss_dssp             EEEGGGCCSHHHHHHHHHHHT-----------TCC--TTC-CSSHHHHHH-HHHHTSCSSEEEEEETHHHHHHHTTTHHH
T ss_pred             EEECccCCCHHHHHHHHHHHc-----------CCC--ccc-CCCHHHHHH-HHcCCCCCCeEEEEeccHHHhhhCHHHHH
Confidence            467788999999988765554           444  222 568999999 885333333222222      24555666


Q ss_pred             ---HHHHHHHhcCC
Q psy7171         125 ---EIFTELKACGT  135 (146)
Q Consensus       125 ---evF~eLK~~~~  135 (146)
                         ++|+|...+..
T Consensus        69 ~li~il~da~ee~~   82 (89)
T d1ay7b_          69 SVLQVFREAKAEGC   82 (89)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCC
Confidence               67777766643