Psyllid ID: psy7189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Protein Sequence
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDKYKKDLKSS
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQfvsnnkftiEEEETLKKNLASLKRLSEdiynkkyprtfqtsasglngkecNTLLSQEFLDAMREDSKGMFSKLFKRKDKYKKDLKSS
Flexible Loop (DISEMBL)
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTraqfvsnnkftieeeetLKKNLASLKRLsediynkkyprtfqtsasglngkeCNTLLSQEFLDAMREDSKgmfsklfkrkdkykkdlkss
Low Complexity Region (SEG)
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKGMfsklfkrkdkykkdlksS
Disordered region (IsUnstruct)
*CYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEE*******LA*LKRLSEDIYNKKYP**************CNTLL*********************************
Disordered Region (DISOPRED)
*CYLYQVVVIYWVGEGKKYRDFAEYLRELTRA**********E**ETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQ*******************************
Disordered Region (DISEMBL)
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKR***********
Disordered Region (DISPRO)
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDK********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCYLYQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDKYKKDLKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	120	2.2.26 [Sep-21-2011]
Q9BRT2	126	Mitochondrial nucleoid fa	yes	N/A	0.783	0.746	0.372	1e-08
Q3SZ13	136	Mitochondrial nucleoid fa	yes	N/A	0.783	0.691	0.372	2e-08
Q9CQY6	136	Mitochondrial nucleoid fa	yes	N/A	0.783	0.691	0.372	7e-08
Q6PBU7	129	Mitochondrial nucleoid fa	yes	N/A	0.791	0.736	0.305	3e-07
B5DFN3	136	Mitochondrial nucleoid fa	yes	N/A	0.783	0.691	0.351	4e-07
Q0VFC7	124	Mitochondrial nucleoid fa	yes	N/A	0.816	0.790	0.277	6e-05

>sp|Q9BRT2|MNF1_HUMAN Mitochondrial nucleoid factor 1 OS=Homo sapiens GN=MNF1 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR   
Sbjct: 18  VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRPRD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + L+ ++E  KGM+ KL
Sbjct: 78  TSFSGLSLEEYKLILSTDTLEELKEIDKGMWKKL 111

Homo sapiens (taxid: 9606)

>sp|Q3SZ13|MNF1_BOVIN Mitochondrial nucleoid factor 1 OS=Bos taurus GN=MNF1 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR  +
Sbjct: 18  VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDEMYESLARLHSNYYKHKYPRPRE 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + LD  +E +KG + KL
Sbjct: 78  TSFSGLSLEEYKLILSTDTLDEFKEMNKGTWKKL 111

Bos taurus (taxid: 9913)

>sp|Q9CQY6|MNF1_MOUSE Mitochondrial nucleoid factor 1 OS=Mus musculus GN=Mnf1 PE=1 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 47/94 (50%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       I E E   +   SL RL  + Y  KYPR   
Sbjct: 18  VDETKRGRDLGAYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRPRD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + L+  +E +K M+ KL
Sbjct: 78  TSFSGLSVEEYKLILSTDTLEEFQEMNKSMWKKL 111

Mus musculus (taxid: 10090)

>sp|Q6PBU7|MNF1_DANRE Mitochondrial nucleoid factor 1 OS=Danio rerio GN=mnf1 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 49/95 (51%)

Query: 15  EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTS 74
           E KK RD   +LR+   + F       I + E   +   SL R++ ++Y +K+PR   TS
Sbjct: 20  ESKKGRDLGTFLRQRVASAFREGENTQISDPEKCDQMYESLARINSNVYKEKFPRAKDTS 79

Query: 75  ASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKR 109
            +G+  +EC  LL+   +    E+ KG++  L +R
Sbjct: 80  FTGVTVEECRLLLATGSMQQTDEEKKGLWKTLMER 114

Danio rerio (taxid: 7955)

>sp|B5DFN3|MNF1_RAT Mitochondrial nucleoid factor 1 OS=Rattus norvegicus GN=Mnf1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR   
Sbjct: 18  VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRPRD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + L+  +E +K ++ KL
Sbjct: 78  TSFSGLSVEEYKLILSTDTLEEFQEMNKSVWRKL 111

Rattus norvegicus (taxid: 10116)

>sp|Q0VFC7|MNF1_XENTR Mitochondrial nucleoid factor 1 OS=Xenopus tropicalis GN=mnf1 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E +  RD   ++R+     F       +++ +   +  ASL R++ + Y +KYPR   
Sbjct: 18  VDETRVGRDLGAFIRQRVAQAFREGESTQVDDPDACDEMYASLNRMNTNYYREKYPRLQD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDKY 113
           TS + +  +E   +L+ + L  M E  KGM+ +L   +DK+
Sbjct: 78  TSFTEVTAEEYKMVLASDNLKQMEEMKKGMWKRL---RDKF 115

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
91094747	451	PREDICTED: similar to s-adenosyl-methyl	0.85	0.226	0.350	3e-08
170057826	1479	s-adenosyl-methyl transferase mraw [Cule	0.816	0.066	0.306	7e-08
194741006	102	GF17543 [Drosophila ananassae] gi|190626	0.8	0.941	0.352	1e-07
307211744	125	Uncharacterized protein C6orf125 [Harpeg	0.725	0.696	0.333	1e-07
347968636	103	AGAP013130-PA [Anopheles gambiae str. PE	0.708	0.825	0.313	2e-07
312373366	182	hypothetical protein AND_17512 [Anophele	0.633	0.417	0.337	2e-07
345778580	136	PREDICTED: uncharacterized protein C6orf	0.783	0.691	0.382	3e-07
195055512	104	GH14879 [Drosophila grimshawi] gi|193892	0.666	0.769	0.4	4e-07
395832176	136	PREDICTED: mitochondrial nucleoid factor	0.783	0.691	0.382	4e-07
426352774	126	PREDICTED: mitochondrial nucleoid factor	0.783	0.746	0.372	4e-07

>gi|91094747|ref|XP_971437.1| PREDICTED: similar to s-adenosyl-methyl transferase mraw [Tribolium castaneum] gi|270010790|gb|EFA07238.1| hypothetical protein TcasGA2_TC010595 [Tribolium castaneum]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 12/114 (10%)

Query: 4   LYQVVVIYWVGEGKKYRDFAEYLR-ELTRA----QFVSNNKFTIEEEETLKKNLASLKRL 58
           + Q++  + V EGK  RD  E+LR ++T+A    +F +N K+             SL+RL
Sbjct: 11  ILQLLEKWPVEEGKVGRDLGEFLRTKITKAYKENKFEANQKY-------WDSQYISLQRL 63

Query: 59  SEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDK 112
             + YN KYPR   +SA+GL  ++C   LS EFL  ++E+ +  + K+F  K K
Sbjct: 64  VNNDYNIKYPRLLSSSATGLTAEQCKLALSNEFLKELQEEDRPFYKKIFSFKSK 117

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 3/101 (2%)

Query: 13   VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
            V + K  RD  +YLR+  +A     N   +++E  ++++  SL+ +  D++ K +PR+  
Sbjct: 1046 VDQSKIGRDLGQYLRDQLKAVLGGTNIIAVKDERLVRQH-QSLENIVNDVHLKAHPRSLN 1104

Query: 73   TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKLFKRKDKY 113
            ++A+GL+G++C  +LS EFL+ +  + +G F KL  R  ++
Sbjct: 1105 STATGLSGEQCREVLSSEFLEYL--NKEGGFEKLGLRGGRW 1143

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194741006|ref|XP_001952980.1| GF17543 [Drosophila ananassae] gi|190626039|gb|EDV41563.1| GF17543 [Drosophila ananassae]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 9/105 (8%)

Query: 1   MCYLYQV---VVIYWVGE-GKKYRDFAEYLR-ELTRAQFVSNNKFTIEEEETLKKNLASL 55
           M  LYQ    V+  W  +  K  RD  E +R ++T+   +         ++ L   + +L
Sbjct: 1   MSALYQRFLKVLEKWPADKSKAGRDLGEQIRKQVTKLTSLKGG----ATDQGLDLQIGAL 56

Query: 56  KRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSK 100
           +RLS ++Y +KYPRTF ++A+GL   +CN +LS EFL  + E SK
Sbjct: 57  ERLSNNVYLRKYPRTFDSTATGLTAAQCNQVLSSEFLQYLNEGSK 101

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211744|gb|EFN87739.1| Uncharacterized protein C6orf125 [Harpegnathos saltator]

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 50/87 (57%)

Query: 21  DFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNG 80
           D  +++R+  +  F      T  ++E   +  ASL RLS + + ++Y RT  ++ASGL+ 
Sbjct: 25  DLGQHIRDQLKIAFAKGESATQVDQERCNRYYASLNRLSSNYHGQRYKRTLLSTASGLDR 84

Query: 81  KECNTLLSQEFLDAMREDSKGMFSKLF 107
           K+CN +L+ E L+   E+ KGM  K +
Sbjct: 85  KQCNLVLTPEMLEYFNEEDKGMIEKYY 111

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968636|ref|XP_003436253.1| AGAP013130-PA [Anopheles gambiae str. PEST] gi|333467912|gb|EGK96760.1| AGAP013130-PA [Anopheles gambiae str. PEST]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 1/86 (1%)

Query: 11 YWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
          + V + K  RD  +YLR+       S+N   ++++  L++   SL+ +  D++  +YPRT
Sbjct: 15 WPVDKSKVGRDLGQYLRDQLTVVLGSSNIVAVKDDR-LQRQFHSLENIVNDVHANRYPRT 73

Query: 71 FQTSASGLNGKECNTLLSQEFLDAMR 96
           +++A+GL G++C  +LS EFL+ ++
Sbjct: 74 LKSTATGLTGEQCREVLSTEFLEIIQ 99

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373366|gb|EFR21122.1| hypothetical protein AND_17512 [Anopheles darlingi]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 1/77 (1%)

Query: 20  RDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLN 79
           RD  +YLR+  +A   S+N   ++++  L     +L+ +  D++ KKYPR   ++A+GL+
Sbjct: 98  RDLGQYLRDQLKAVLGSSNIIAVKDDR-LNGQFRALENIVNDVHAKKYPRALSSTATGLS 156

Query: 80  GKECNTLLSQEFLDAMR 96
           G++C  +LS EFL  ++
Sbjct: 157 GEQCREVLSTEFLQILQ 173

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345778580|ref|XP_003431746.1| PREDICTED: uncharacterized protein C6orf125 homolog [Canis lupus familiaris]

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 48/94 (51%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       I E E   +   SL RL  + Y  KYPR   
Sbjct: 18  VDESKRGRDLGTYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRPRD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + L+  +E +KGM+ KL
Sbjct: 78  TSFSGLSVEEYKLILSTDTLEEFKEMNKGMWKKL 111

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195055512|ref|XP_001994661.1| GH14879 [Drosophila grimshawi] gi|193892424|gb|EDV91290.1| GH14879 [Drosophila grimshawi]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 10/90 (11%)

Query: 8  VVIYWVGEGKKY-RDFAEYLRE----LTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDI 62
          V+  W  E  K  RD  E +R+    LT A  +SN K T E    L + + +L+RLS+++
Sbjct: 11 VLEKWPAEQTKVGRDLGEQIRKQVTRLTDASSLSNEK-TAE----LNRQIDALERLSKNV 65

Query: 63 YNKKYPRTFQTSASGLNGKECNTLLSQEFL 92
          Y KKYPR ++++A+GL   +C+ +LS EFL
Sbjct: 66 YAKKYPRRYESTATGLTAAQCSQVLSSEFL 95

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395832176|ref|XP_003789151.1| PREDICTED: mitochondrial nucleoid factor 1 [Otolemur garnettii]

 Score = 58.9 bits (141), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 48/94 (51%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       I E E   +   SL RL  + Y  KYPR   
Sbjct: 18  VDETKRGRDLGTYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRPRD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + L+  +E +KGM+ KL
Sbjct: 78  TSFSGLSVEEYKLILSTDTLEEFKEMNKGMWKKL 111

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426352774|ref|XP_004043883.1| PREDICTED: mitochondrial nucleoid factor 1 [Gorilla gorilla gorilla]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 48/94 (51%)

Query: 13  VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQ 72
           V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR   
Sbjct: 18  VDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRPRD 77

Query: 73  TSASGLNGKECNTLLSQEFLDAMREDSKGMFSKL 106
           TS SGL+ +E   +LS + L+ ++E  KGM+ KL
Sbjct: 78  TSFSGLSLEEYKLILSTDTLEELKEIDKGMWKKL 111

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	120
UNIPROTKB|E2RKL7	136	MNF1 "Uncharacterized protein"	0.758	0.669	0.380	6.6e-10
UNIPROTKB|Q3SZ13	136	MNF1 "Mitochondrial nucleoid f	0.75	0.661	0.373	1.4e-09
UNIPROTKB|Q9BRT2	126	MNF1 "Mitochondrial nucleoid f	0.758	0.722	0.369	1.4e-09
UNIPROTKB|F1RZQ9	136	MNF1 "Uncharacterized protein"	0.758	0.669	0.369	3.6e-09
MGI|MGI:1914517	136	Mnf1 "mitochondrial nucleoid f	0.758	0.669	0.369	5.9e-09
ZFIN|ZDB-GENE-040426-1726	129	zgc:73238 "zgc:73238" [Danio r	0.733	0.682	0.306	1.6e-08
RGD|1306917	136	Mnf1 "mitochondrial nucleoid f	0.758	0.669	0.347	2e-08
UNIPROTKB|Q0VFC7	124	mnf1 "Mitochondrial nucleoid f	0.758	0.733	0.282	7.8e-07
UNIPROTKB|F1NC48	326	F1NC48 "Uncharacterized protei	0.5	0.184	0.333	0.00029

UNIPROTKB|E2RKL7 MNF1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 35/92 (38%), Positives = 46/92 (50%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W V E K+ RD   YLR+     F       I E E   +   SL RL  + Y  KYPR 
Sbjct:    16 WPVDESKRGRDLGTYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRP 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKGM 102
               TS SGL+ +E   +LS + L+  +E +KGM
Sbjct:    76 RDTSFSGLSVEEYKLILSTDTLEEFKEMNKGM 107

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3SZ13 MNF1 "Mitochondrial nucleoid factor 1" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 34/91 (37%), Positives = 46/91 (50%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR 
Sbjct:    16 WPVDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDEMYESLARLHSNYYKHKYPRP 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKG 101
              +TS SGL+ +E   +LS + LD  +E +KG
Sbjct:    76 RETSFSGLSLEEYKLILSTDTLDEFKEMNKG 106

GO:0042645 "mitochondrial nucleoid" evidence=ISS

UNIPROTKB|Q9BRT2 MNF1 "Mitochondrial nucleoid factor 1" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 34/92 (36%), Positives = 46/92 (50%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR 
Sbjct:    16 WPVDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRP 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKGM 102
               TS SGL+ +E   +LS + L+ ++E  KGM
Sbjct:    76 RDTSFSGLSLEEYKLILSTDTLEELKEIDKGM 107

GO:0042645 "mitochondrial nucleoid" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1RZQ9 MNF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 34/92 (36%), Positives = 45/92 (48%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W + E K+ RD   YLR+     F       I E E   +   SL RL  + Y  KYPR 
Sbjct:    16 WPLDETKRGRDLGAYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRP 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKGM 102
               TS SGL+ +E   +LS + LD  +E  KG+
Sbjct:    76 RDTSFSGLSLEEYKLILSTDTLDEFKEMDKGV 107

GO:0042645 "mitochondrial nucleoid" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1914517 Mnf1 "mitochondrial nucleoid factor 1" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 34/92 (36%), Positives = 45/92 (48%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W V E K+ RD   YLR+     F       I E E   +   SL RL  + Y  KYPR 
Sbjct:    16 WPVDETKRGRDLGAYLRQRVAQAFREGENTQIAEPEACDQMYESLARLHSNYYKHKYPRP 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKGM 102
               TS SGL+ +E   +LS + L+  +E +K M
Sbjct:    76 RDTSFSGLSVEEYKLILSTDTLEEFQEMNKSM 107

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0042645 "mitochondrial nucleoid" evidence=ISO

ZFIN|ZDB-GENE-040426-1726 zgc:73238 "zgc:73238" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/88 (30%), Positives = 45/88 (51%)

Query:    15 EGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTS 74
             E KK RD   +LR+   + F       I + E   +   SL R++ ++Y +K+PR   TS
Sbjct:    20 ESKKGRDLGTFLRQRVASAFREGENTQISDPEKCDQMYESLARINSNVYKEKFPRAKDTS 79

Query:    75 ASGLNGKECNTLLSQEFLDAMREDSKGM 102
              +G+  +EC  LL+   +    E+ KG+
Sbjct:    80 FTGVTVEECRLLLATGSMQQTDEEKKGL 107

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0042645 "mitochondrial nucleoid" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IEA

RGD|1306917 Mnf1 "mitochondrial nucleoid factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 32/92 (34%), Positives = 45/92 (48%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W V E K+ RD   YLR+     F       + E E   +   SL RL  + Y  KYPR 
Sbjct:    16 WPVDETKRGRDLGAYLRQRVAQAFREGENTQVAEPEACDQMYESLARLHSNYYKHKYPRP 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKGM 102
               TS SGL+ +E   +LS + L+  +E +K +
Sbjct:    76 RDTSFSGLSVEEYKLILSTDTLEEFQEMNKSV 107

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0042645 "mitochondrial nucleoid" evidence=ISO;ISS

UNIPROTKB|Q0VFC7 mnf1 "Mitochondrial nucleoid factor 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 26/92 (28%), Positives = 45/92 (48%)

Query:    12 W-VGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRT 70
             W V E +  RD   ++R+     F       +++ +   +  ASL R++ + Y +KYPR 
Sbjct:    16 WPVDETRVGRDLGAFIRQRVAQAFREGESTQVDDPDACDEMYASLNRMNTNYYREKYPRL 75

Query:    71 FQTSASGLNGKECNTLLSQEFLDAMREDSKGM 102
               TS + +  +E   +L+ + L  M E  KGM
Sbjct:    76 QDTSFTEVTAEEYKMVLASDNLKQMEEMKKGM 107

GO:0042645 "mitochondrial nucleoid" evidence=ISS

UNIPROTKB|F1NC48 F1NC48 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
 Identities = 20/60 (33%), Positives = 32/60 (53%)

Query:    42 IEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNGKECNTLLSQEFLDAMREDSKG 101
             I + ET  +   SL R+  + Y  KYPR   TS +G+  ++C  +L+ + L  M +  KG
Sbjct:   248 IADPETCDQMYESLVRIHNNYYKNKYPRLKDTSFTGVTVQDCKMILATDILKQMEDMKKG 307


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      120       103   0.00091  102 3  11 22  0.43    30
                                                     29  0.49    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  110 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.30u 0.11s 15.41t   Elapsed:  00:00:01
  Total cpu time:  15.30u 0.11s 15.41t   Elapsed:  00:00:01
  Start:  Thu Aug 15 17:32:03 2013   End:  Thu Aug 15 17:32:04 2013

GO:0008440 "inositol-1,4,5-trisphosphate 3-kinase activity" evidence=IEA

GO:0000831 "inositol hexakisphosphate 6-kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0032958 "inositol phosphate biosynthetic process" evidence=IEA

GO:0046488 "phosphatidylinositol metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B5DFN3	MNF1_RAT	No assigned EC number	0.3510	0.7833	0.6911	yes	N/A
Q9BRT2	MNF1_HUMAN	No assigned EC number	0.3723	0.7833	0.7460	yes	N/A
Q6PBU7	MNF1_DANRE	No assigned EC number	0.3052	0.7916	0.7364	yes	N/A
Q9CQY6	MNF1_MOUSE	No assigned EC number	0.3723	0.7833	0.6911	yes	N/A
Q3SZ13	MNF1_BOVIN	No assigned EC number	0.3723	0.7833	0.6911	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	120
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	83.03
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	82.89

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=83.03  E-value=3.5  Score=25.83  Aligned_cols=42  Identities=21%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             HHHHHHHhhcCCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHH
Q psy7189           5 YQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLA   53 (120)
Q Consensus         5 fl~L~e~W~D~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~   53 (120)
                      +|+-|..|     +.-+..++++.+|...|+.+.+  +.||+..++.++
T Consensus        10 lLR~~~~~-----~~~~~r~~~~~~ir~~Fr~~~~--~td~~~i~~~l~   51 (61)
T PF13232_consen   10 LLREASKF-----PDYNFRSYFRRRIRDRFRRNKN--VTDPEKIAKLLK   51 (61)
T ss_pred             HHHHhhhc-----CCcchHHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence            45556666     2223339999999999998777  468887766654

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=82.89  E-value=5.1  Score=24.51  Aligned_cols=43  Identities=19%  Similarity=0.217  Sum_probs=31.1

Q ss_pred             HHHHHHHhhcCCcccccHHHHHHHHHHHHhhhCCCcChhhHHHHHHHHHH
Q psy7189           5 YQVVVIYWVGEGKKYRDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLAS   54 (120)
Q Consensus         5 fl~L~e~W~D~tK~gRDLG~~lR~~v~~~F~~g~~t~~~d~e~c~k~~~S   54 (120)
                      +|+.+..|     ++.+.-.+++..|+..|+++...  +||+..+..+..
T Consensus        10 lLR~~~~~-----~~~~~r~~~~~~iR~~Fr~n~~~--~d~~~I~~~l~~   52 (59)
T PF05347_consen   10 LLRAARSF-----PDDSEREYIRAEIRQEFRKNRNE--TDPEKIEELLKK   52 (59)
T ss_pred             HHHHHHHc-----CCcchHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHH
Confidence            44555555     33337889999999999998884  688887766543

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	120
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 22/140 (15%), Positives = 39/140 (27%), Gaps = 33/140 (23%)

Query: 10  IYW--VGEGKKYRDFAEYLREL---------TRAQFVSNNKFTIEEEETLKKNLASLKRL 58
           I+W  +          E L++L         +R+   SN K  I   +   + L   K  
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 59  SE------DIYNKKYPRTFQ-------TS-----ASGLNGKECNTLLSQEFLDAMRED-S 99
                   ++ N K    F        T+        L+      +        +  D  
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 100 KGMFSKLFKRKDKYKKDLKS 119
           K +  K    +    +DL  
Sbjct: 304 KSLLLKYLDCR---PQDLPR 320

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00