Psyllid ID: psy7191

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410---
Protein Sequence
MDNSVLPGPSSTQFGLEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIPSDSDLKLRVAMKKESNKANVSQ
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHcccccccHHHHHccccccccccEEEEEcccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHccccccEEEEccccccHHHHHHHcccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHccHHHHHHHHHHHHHHHHcccccEEcHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHccccEEEEEcccHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccccEcEEEEEcccccccccHHcccccccccccccccccccccHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHcccccHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccccccHHHHHHHHccccHcHHEHEHHHHccccccccc
Coil and Loop (DISEMBL)
mdnsvlpgpsstqfgleehmSLDFAEYLRELTRAQfvsnnkftiEEEETLKKNLASLKRLSEdiynkkyprtfqtsasglndssddvtmidmtygdgnhtRLILENIGNVKVICLDRDKESFEKAKTlaandprlvpvygkfsdlpnILKNMNnnfnsidgiimdvgisdsqanstrgfkpdsnslldmrmsqegitgYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVasvsrpsqtWKRACRTESLQWIATASVvgtevrvdprkhgseHVAQKVYNGLRRFVNNELNELNYAMIIAEkylkpegllltKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVnhnltvnpldmssltsspwtildkiipsdsDLKLRVAMKKEsnkanvsq
Flexible Loop (DISEMBL)
mdnsvlpgpsstqfgleeHMSLDFAEYLRELTRAQFVsnnkftieeeetLKKNLASLKRLSediynkkyprtfqtsasglndssddVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAktlaandprlvpvyGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKtygeekrsrqiARAIietrytfkklertrdlnelvasvsrpsqtwkracrteslqwiatasvvgtevrvdprkhgsehvaQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIPSDSDLKLRVAMkkesnkanvsq
Low Complexity Region (SEG)
MDNSVLPGPSSTQFGLEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIPSDSDLKLRVAMKKESNKANVSQ
Disordered region (IsUnstruct)
*******************MSLDFAEYLRELTRAQFVSNNKFTIE******************IYN********************VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI**************************GITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIP**********************
Disordered Region (DISOPRED)
********PSSTQFGLEEHMSLDFAEYLRELTRA*******************************NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVG*************HVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNV************VNHN************************SDSDLKLRV*************
Disordered Region (DISEMBL)
**********STQFGLEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIPSDSDLKLRVAM***********
Disordered Region (DISPRO)
************QFG*EEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIPSDSDLKLRV*MKKE********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNSVLPGPSSTQFGLEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDKIIPSDSDLKLRVAMKKESNKANVSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	413	2.2.26 [Sep-21-2011]
Q9VGY5	356	Probable methyltransferas	yes	N/A	0.704	0.817	0.359	2e-48
Q9DCL4	406	Probable methyltransferas	yes	N/A	0.578	0.588	0.373	7e-37
A6NJ78	407	Probable methyltransferas	yes	N/A	0.576	0.584	0.348	5e-35
Q5R5T5	407	Probable methyltransferas	yes	N/A	0.576	0.584	0.340	1e-34
A0JN95	407	Probable methyltransferas	yes	N/A	0.578	0.587	0.335	4e-34
B3QFN9	332	Ribosomal RNA small subun	yes	N/A	0.542	0.674	0.348	1e-31
C5ATZ5	351	Ribosomal RNA small subun	yes	N/A	0.547	0.643	0.340	8e-31
Q133W3	332	Ribosomal RNA small subun	yes	N/A	0.571	0.710	0.355	1e-30
P60398	332	Ribosomal RNA small subun	yes	N/A	0.542	0.674	0.340	1e-30
A9VW37	351	Ribosomal RNA small subun	yes	N/A	0.547	0.643	0.337	1e-30

>sp|Q9VGY5|MET15_DROME Probable methyltransferase-like protein 15 homolog OS=Drosophila melanogaster GN=CG14683 PE=2 SV=2

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/334 (35%), Positives = 177/334 (52%), Gaps = 43/334 (12%)

Query: 88  TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSD 144
           T  DMT+G G HTR +LE     KV  LDRD  + + A+ ++ ++    RL+P+ GKFSD
Sbjct: 46  TYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKFSD 105

Query: 145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMS---QEGITGYQ 200
           LP + K      NS+DG++ D G S  Q + + RGF    +  LDMRM      G+T   
Sbjct: 106 LPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTAAD 165

Query: 201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
           VL+ ++E  L KIL+ YGEEK +++IAR +++ R    K+E T+ L +++ ++       
Sbjct: 166 VLANVEEGDLVKILRMYGEEKAAKKIARGLVDARNALFKIETTKQLADIIENI------M 219

Query: 261 KRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIA 320
               R + L+  A                   H A K +  +R FVNNELNE+NY M++A
Sbjct: 220 DGGTRKDKLRRPA-------------------HSATKTFQAIRIFVNNELNEINYGMVLA 260

Query: 321 EKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTS 380
            + L+ +G L+T     +ED IVKRH+ GNV+   AN L LK+ +H     P  + SLT 
Sbjct: 261 NEILRVDGRLVTITFHSLEDTIVKRHINGNVLAGAANALPLKYSSHYAIDEPDILESLTK 320

Query: 381 SPWTILDK-IIPSDSD----------LKLRVAMK 403
             W  L + +I  D+D           KLR A+K
Sbjct: 321 KSWKQLHRHVIVPDADEVARNTRSRSAKLRAAVK 354

Probable S-adenosyl-L-methionine-dependent methyltransferase.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9DCL4|MET15_MOUSE Probable methyltransferase-like protein 15 OS=Mus musculus GN=Mettl15 PE=2 SV=2

 Score =  155 bits (391), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 143/268 (53%), Gaps = 29/268 (10%)

Query: 88  TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLP 146
             +DMT+G G HTR IL+   +V V  LDRD  ++  A+ L+   P ++  + G+FS   
Sbjct: 91  VFLDMTFGSGGHTRAILQKEPDVMVYALDRDPVAYAIAEQLSRLYPTQIQALLGQFSQAE 150

Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQV 201
            +L        +IDGI+MD+G S  Q ++  RGF    +  LDMRM  +      T   V
Sbjct: 151 ALLMKAGVQPGTIDGILMDLGCSSMQLDAPERGFSLRKDGPLDMRMDGDRYPDTPTASDV 210

Query: 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWK 261
           ++A+D+ +LA IL+ YGEEK +++IA AII+ R T+  + RT+ L  +VA    PS  + 
Sbjct: 211 VNALDQQALASILRAYGEEKHAKKIASAIIQARSTYP-ISRTQQLASIVAGAFPPSAVY- 268

Query: 262 RACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAE 321
              R + LQ                    S H+A K +  LR FVNNELNEL   +  AE
Sbjct: 269 --ARKDLLQR-------------------STHIATKTFQALRIFVNNELNELYAGLRTAE 307

Query: 322 KYLKPEGLLLTKCNSIVEDKIVKRHLTG 349
           K+LK  G L+      +ED+IVKR L G
Sbjct: 308 KFLKTGGRLVALSFHSLEDRIVKRFLLG 335

Probable S-adenosyl-L-methionine-dependent methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6NJ78|MET15_HUMAN Probable methyltransferase-like protein 15 OS=Homo sapiens GN=METTL15 PE=2 SV=1

 Score =  149 bits (375), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 143/267 (53%), Gaps = 29/267 (10%)

Query: 89  MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLPN 147
            +DMT+G G HT+ IL+   ++ +  LDRD  ++  A+ L+   P+ +  + G+FS    
Sbjct: 92  FLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAMLGQFSQAEA 151

Query: 148 ILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMS----QEGITGYQVL 202
           +L        + DG++MD+G S  Q ++  RGF    +  LDMRM      +  T   V+
Sbjct: 152 LLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVV 211

Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
           +A+D+ +LA IL+TYGEEK +++IA AI++ R  +  + RT+ L  +VA    PS  +  
Sbjct: 212 NALDQQALASILRTYGEEKHAKKIASAIVQARSIYP-ITRTQQLASIVAGAFPPSAIY-- 268

Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
             R + LQ                    S H+A K +  LR FVNNELNEL   +  A+K
Sbjct: 269 -TRKDLLQ-------------------RSTHIATKTFQALRIFVNNELNELYTGLKTAQK 308

Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLTG 349
           +L+P G L+      +ED+IVKR L G
Sbjct: 309 FLRPGGRLVALSFHSLEDRIVKRFLLG 335

Probable S-adenosyl-L-methionine-dependent methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R5T5|MET15_PONAB Probable methyltransferase-like protein 15 OS=Pongo abelii GN=METTL15 PE=2 SV=1

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 142/267 (53%), Gaps = 29/267 (10%)

Query: 89  MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLPN 147
            +DMT+G G HT+ IL+   ++ +  LDRD  ++  A+ L+   P+ +  + G+FS    
Sbjct: 92  FLDMTFGSGGHTKAILQKESDIVLYALDRDPTAYALAEHLSELYPKQIRAMLGQFSQAET 151

Query: 148 ILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMS----QEGITGYQVL 202
           +L        + DG++MD+G S  Q ++  RGF    +  LDMRM      +  T   V+
Sbjct: 152 LLMKAGVQPGTFDGVLMDLGCSSMQLDTPERGFSLRKDGPLDMRMDGGRYPDMPTAADVV 211

Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
           +A D+ +LA IL+TYGEEK +++IA AI++ R  +  + RT+ L  +VA    PS  +  
Sbjct: 212 NAFDQQALASILRTYGEEKHAKKIASAIVQARSIYP-ITRTQQLASIVAGAFPPSAIY-- 268

Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
             R + LQ                    S H+A K +  +R FVNNELNEL   +  A+K
Sbjct: 269 -ARKDLLQ-------------------RSTHIATKTFQAVRIFVNNELNELYMGLKTAQK 308

Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLTG 349
           +L+P G L+      +ED+I+KR L G
Sbjct: 309 FLRPGGRLVALSFHSLEDRIIKRFLLG 335

Probable S-adenosyl-L-methionine-dependent methyltransferase.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A0JN95|MET15_BOVIN Probable methyltransferase-like protein 15 OS=Bos taurus GN=METTL15 PE=2 SV=1

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 141/268 (52%), Gaps = 29/268 (10%)

Query: 88  TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLP 146
             +DMT+G G HTR IL+   ++ +  LDRD  ++  A+ L+   P+ +  + G+FS   
Sbjct: 91  VFLDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQLSELYPKQIRAILGQFSQAE 150

Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQV 201
            +L        ++DG+++D+G S  Q ++  RGF    +  LDMRM  +      T   V
Sbjct: 151 ALLMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPDMPTAADV 210

Query: 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWK 261
           ++A+D+ +LA IL+ YGEEK +++IA AII+ R  +  + RT+ L  +VA    PS  + 
Sbjct: 211 VNALDQQALASILRAYGEEKHAKKIASAIIQARGLYP-ITRTQQLASIVAGAFPPSALY- 268

Query: 262 RACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAE 321
              R + LQ                      H+A K +   R FVNNELNEL   +  A+
Sbjct: 269 --ARKDLLQR-------------------PTHIATKTFQAFRIFVNNELNELYTGLKTAQ 307

Query: 322 KYLKPEGLLLTKCNSIVEDKIVKRHLTG 349
           K+L+P G L+      +ED+I+KR L G
Sbjct: 308 KFLRPGGHLVALSFHSLEDRIIKRFLLG 335

Probable S-adenosyl-L-methionine-dependent methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B3QFN9|RSMH_RHOPT Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas palustris (strain TIE-1) GN=rsmH PE=3 SV=1

 Score =  138 bits (347), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 135/261 (51%), Gaps = 37/261 (14%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI 148
           +D T+G G +TRLILE  G+ +VI +DRD  +      L A+   RL  V  +FS+L ++
Sbjct: 29  VDGTFGAGGYTRLILETAGS-RVIAIDRDPTAIAGGADLVADAGHRLTLVQDRFSNLADV 87

Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
                    ++DG++MD+G+S  Q + + RGF    +  LDMRM ++G +   V++   E
Sbjct: 88  CAAQGAA--TVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDMRMGRDGPSAADVVARASE 145

Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
             LA I+  +GEE+ SR +ARAI+  R +   +  T+ L ++VA V              
Sbjct: 146 TDLANIIYIFGEERYSRHVARAIVAAR-SDAPITTTKALADIVAKV-------------- 190

Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
                         VR  P   G  H A + + GLR FVN EL+EL+ A+  AE+ LKP 
Sbjct: 191 --------------VRAKP---GEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPG 233

Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
           G L       +ED+IVK  LT
Sbjct: 234 GRLAVVSFHSLEDRIVKTFLT 254

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Rhodopseudomonas palustris (strain TIE-1) (taxid: 395960)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|C5ATZ5|RSMH_METEA Ribosomal RNA small subunit methyltransferase H OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=rsmH PE=3 SV=1

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 35/261 (13%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRLVPVYGKFSDLPNI 148
           +D T+G G +TR +LE    V+VI +DRD  +      L  A+  RL  V G+F DL  +
Sbjct: 41  VDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADLVTASGGRLRLVQGRFGDLDTL 100

Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
           + + +      D I++D+G+S  Q + + RGF    +  LDMRM  EG +   +++  +E
Sbjct: 101 IADQDEA--QADWIVLDIGVSSMQIDEAQRGFSFRQDGPLDMRMGGEGPSAADLVNGEEE 158

Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
            +LA IL  +GEE+RSR +ARAI+E R     +E T  L +LVA V RP           
Sbjct: 159 TTLADILYHFGEERRSRAVARAIVEARRR-APIETTAQLADLVAGVVRPEP--------- 208

Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
                      G+ +          H A + + GLR  VN+EL EL   +  AE+ LKP 
Sbjct: 209 -----------GSPI----------HPATRSFQGLRIAVNDELGELVRGLHAAERVLKPG 247

Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
           G L       +ED+IVK+  +
Sbjct: 248 GRLAVVTFHSLEDRIVKQFFS 268

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) (taxid: 272630)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|Q133W3|RSMH_RHOPS Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas palustris (strain BisB5) GN=rsmH PE=3 SV=2

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 133/273 (48%), Gaps = 37/273 (13%)

Query: 77  ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRL 135
           A GL    D    +D T+G G +TRLILE   + +VI +DRD+ +      L  +   RL
Sbjct: 16  AVGLLAPRDGGVYVDGTFGAGGYTRLILEA-ADTRVIAIDRDRNAIADGFDLVQSTSGRL 74

Query: 136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE 194
             V  +FS+L ++ +       S+DG++MD+G+S  Q + + RGF    +  LDMRM  +
Sbjct: 75  TLVEDRFSNLADVCEAQGAE--SVDGVVMDIGVSSMQVDQADRGFSFRLDGPLDMRMGND 132

Query: 195 GITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVS 254
           G T   V++   E  LA I+  +GEEK SR +ARAII  R                    
Sbjct: 133 GPTAADVVAHASEADLANIIYIFGEEKYSRHVARAIIAARK------------------D 174

Query: 255 RPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELN 314
            P  T K           A A +V T VR  P   G  H A + +  LR FVN EL+EL 
Sbjct: 175 APIVTTK-----------ALADIVATVVRSKP---GQIHPATRTFQALRIFVNEELDELY 220

Query: 315 YAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347
            A+  AE+ LKP G L       +ED+IVK  L
Sbjct: 221 QALSAAERVLKPGGRLAVVSFHSLEDRIVKTFL 253

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Rhodopseudomonas palustris (strain BisB5) (taxid: 316057)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|P60398|RSMH_RHOPA Ribosomal RNA small subunit methyltransferase H OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=rsmH PE=3 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 132/261 (50%), Gaps = 37/261 (14%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI 148
           +D T+G G +TRLILE  G+ +VI +DRD  +      L      RL  V  +FS+L ++
Sbjct: 29  VDGTFGAGGYTRLILETAGS-RVIAIDRDPSAIAGGADLVTEAGGRLTLVQDRFSNLADV 87

Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
                    ++DG++MD+G+S  Q + + RGF    +  LDMRM ++G +   V++   E
Sbjct: 88  CAAQGAA--TVDGVVMDIGVSSMQLDQAERGFSFRFDGPLDMRMGRDGPSAADVVARASE 145

Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
             LA I+  +GEE+ SR +ARAI+  R +   +  T+ L ++VA V              
Sbjct: 146 TDLANIIYIFGEERYSRHVARAIVAAR-SETPITTTKALADIVAKV-------------- 190

Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
                         VR  P   G  H A + + GLR FVN EL+EL+ A+  AE+ LKP 
Sbjct: 191 --------------VRAKP---GEIHPATRTFQGLRIFVNEELDELHQALDAAERVLKPS 233

Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
           G L       +ED+IVK  L 
Sbjct: 234 GRLAVVSFHSLEDRIVKTFLA 254

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (taxid: 258594)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

>sp|A9VW37|RSMH_METEP Ribosomal RNA small subunit methyltransferase H OS=Methylobacterium extorquens (strain PA1) GN=rsmH PE=3 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 35/261 (13%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-ANDPRLVPVYGKFSDLPNI 148
           +D T+G G +TR +LE    V+VI +DRD  +      L  A+  RL  V G+F DL  +
Sbjct: 41  VDGTFGAGGYTRALLEAGPEVRVIAIDRDPTAIRGGADLVTASGGRLRLVQGRFGDLDTL 100

Query: 149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
           + + +      D +++D+G+S  Q + + RGF    +  LDMRM  EG +   +++  +E
Sbjct: 101 IADQDEP--QADWVVLDIGVSSMQIDEAQRGFSFRQDGPLDMRMGGEGPSAADLVNGEEE 158

Query: 208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTE 267
            +LA IL  +GEE+RSR +ARAI+E R     +E T  L +LVA V RP           
Sbjct: 159 TTLADILYHFGEERRSRAVARAIVEARRR-APIETTAQLADLVAGVVRPEP--------- 208

Query: 268 SLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPE 327
                      G+ +          H A + + GLR  VN+EL EL   +  AE+ LKP 
Sbjct: 209 -----------GSPI----------HPATRSFQGLRIAVNDELGELVRGLHAAERVLKPG 247

Query: 328 GLLLTKCNSIVEDKIVKRHLT 348
           G L       +ED+IVK+  +
Sbjct: 248 GRLAVVTFHSLEDRIVKQFFS 268

Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.

Methylobacterium extorquens (strain PA1) (taxid: 419610)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
307179074	427	Putative S-adenosyl-L-methionine-depende	0.859	0.831	0.348	6e-58
195055510	368	GH14890 [Drosophila grimshawi] gi|193892	0.699	0.785	0.412	7e-58
170057826	1479	s-adenosyl-methyl transferase mraw [Cule	0.845	0.235	0.335	1e-56
345489473	501	PREDICTED: probable methyltransferase-li	0.823	0.678	0.381	2e-56
332027021	325	Putative S-adenosyl-L-methionine-depende	0.704	0.895	0.393	3e-55
157112116	357	s-adenosyl-methyltransferase mraw [Aedes	0.699	0.809	0.398	5e-55
357623945	447	putative s-adenosyl-methyl transferase m	0.857	0.791	0.328	1e-54
307211743	325	Putative S-adenosyl-L-methionine-depende	0.704	0.895	0.391	1e-53
193659891	351	PREDICTED: probable S-adenosyl-L-methion	0.675	0.794	0.422	1e-53
195389917	364	GJ23252 [Drosophila virilis] gi|19415170	0.699	0.793	0.394	7e-53

>gi|307179074|gb|EFN67546.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Camponotus floridanus]

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 149/427 (34%), Positives = 218/427 (51%), Gaps = 72/427 (16%)

Query: 23  DFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLN- 81
           D  +++R+  +  F   +  +    E   +  ASLK+++ + Y + Y R+  ++ASGLN 
Sbjct: 25  DLGQHIRDQLKIAFAKGDA-SQPNPEQCNRYYASLKKIASNHYGQLYRRSLLSTASGLNR 83

Query: 82  ------------------------------DSSDDVTMIDMTYGDGNHTRLILENIGNVK 111
                                         D S   T +DMT+G G HT   LE + ++K
Sbjct: 84  EQCNLALTPEINVCPDGYLPVMAQEVLTYMDLSPGKTYVDMTFGAGGHTTKFLEYLSDIK 143

Query: 112 VICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD 170
           +  LDRD  +++ A+ L+   P +++P+ G FS+LP +LK  N   NSIDG + D G S 
Sbjct: 144 IFALDRDPVAYKYAQQLSQKYPGKVIPLLGTFSELPQLLKQYNIKRNSIDGFLFDFGCSS 203

Query: 171 SQA-NSTRGFKPDSNSLLDMRMSQ--EGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIA 227
            Q  ++ RGF    N  LDMRM+   +  T   VL    E  LA+I+K YG+EKR+++IA
Sbjct: 204 MQIEDANRGFSLLKNGPLDMRMNGCLKQPTAADVLDRATEEDLARIIKVYGQEKRAKKIA 263

Query: 228 RAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPR 287
           RAIIE RY F+KLE T++L +LV SV                        +  E+R D  
Sbjct: 264 RAIIEARYMFRKLETTQELIQLVESV------------------------LDDEIRTDNL 299

Query: 288 KHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHL 347
              S H A K +  LR FVNNELNE+NY +++A  YLK  G L+T   + +ED I+KRHL
Sbjct: 300 DKYS-HSAVKTFQALRIFVNNELNEINYGILLANIYLKLSGRLITISFNSLEDTIIKRHL 358

Query: 348 TGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTILDK-----------IIPSDSDL 396
           +GN+ ++ AN +ALK+ N+    N  +   LT  PW ++ K           I P     
Sbjct: 359 SGNITDNVANTVALKYANYGKVFNTNEFQILTEKPWKMMHKHVLTPTSEEIEINPKSQSA 418

Query: 397 KLRVAMK 403
           KLR  MK
Sbjct: 419 KLRAIMK 425

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055510|ref|XP_001994660.1| GH14890 [Drosophila grimshawi] gi|193892423|gb|EDV91289.1| GH14890 [Drosophila grimshawi]

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 137/332 (41%), Positives = 189/332 (56%), Gaps = 43/332 (12%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA---ANDPRLVPVYGKFSDLP 146
           IDMT+G G HTR +L++     V  LDRD  ++E A+ L+   A   RLVP+ GKFSDLP
Sbjct: 60  IDMTFGAGGHTRRLLDSCPEATVYALDRDPIAYELAQRLSQESAYAGRLVPLLGKFSDLP 119

Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMS---QEGITGYQVL 202
            +L + N   +S DGI+ D G S  Q + + RGF    N  LDMRM      G++   VL
Sbjct: 120 QLLTDRNVPRHSFDGILFDFGCSSMQFDEAARGFSIAHNGPLDMRMDCGRSGGVSAADVL 179

Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
           + I+E  LA+IL+ YGEEK +++IARAI+E R   +++E TR L ELVASV    Q    
Sbjct: 180 ARIEEADLARILRVYGEEKAAKKIARAIVEARGALQRIETTRQLAELVASVLGDGQ---- 235

Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
             R + LQ  A                   H+A K +  LR FVNNELNE+NY M++A++
Sbjct: 236 --RQDKLQRPA-------------------HLATKTFQALRIFVNNELNEINYGMLLAQE 274

Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSP 382
           YL+ +G L+      +ED IVKRH+ GNVIE  AN L LK+  H++T +P  + S   S 
Sbjct: 275 YLRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDITHDPALLESFVQSN 334

Query: 383 WTILDK--IIPSDSDL---------KLRVAMK 403
           W  L +  I+P  +++         KLR A+K
Sbjct: 335 WQQLHRHVILPDATEIASNSRSRSAKLRAAIK 366

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170057826|ref|XP_001864654.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus] gi|167877164|gb|EDS40547.1| s-adenosyl-methyl transferase mraw [Culex quinquefasciatus]

 Score =  226 bits (576), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 219/435 (50%), Gaps = 86/435 (19%)

Query: 23   DFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLND 82
            D  +YLR+  +A     N   +++E  ++++  SL+ +  D++ K +PR+  ++A+GL+ 
Sbjct: 1054 DLGQYLRDQLKAVLGGTNIIAVKDERLVRQH-QSLENIVNDVHLKAHPRSLNSTATGLSG 1112

Query: 83   ----------------------------------------------------SSDDVTMI 90
                                                                  D    I
Sbjct: 1113 EQCREVLSSEFLEYLNKEGGFEKLGLRGGRWMSTEAVRHVPVMAAEAIKFLKPQDSELFI 1172

Query: 91   DMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL 149
            DMT+G G HT+ IL+   N K+I LDRD  + E A+ +A   P ++ PV G+FS+LP  L
Sbjct: 1173 DMTFGAGGHTKQILKAAPNAKIITLDRDPVAHELAQEMAKRYPGQIYPVLGRFSELPAKL 1232

Query: 150  KNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE----GITGYQVLSA 204
            K +N N  SIDG+I D G S  Q +   RGF    N  LDMRM ++      +   VL+ 
Sbjct: 1233 KELNVNQRSIDGMIFDFGCSSMQFDEGERGFSISKNGPLDMRMDKDRCPDAPSAADVLAR 1292

Query: 205  IDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRAC 264
            IDE+ LA+ILK YGEEK +++IARAI+E R++ KK+E T++L ELV +            
Sbjct: 1293 IDEMDLARILKVYGEEKFAKRIARAIVEARHSIKKIETTKELAELVQTCC---------- 1342

Query: 265  RTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYL 324
                           +E R+D  +  S H A K +  LR FVNNELNE+NY MI+A+ YL
Sbjct: 1343 --------------ASEFRLDKLQRPS-HPATKTFQALRIFVNNELNEINYGMILAQHYL 1387

Query: 325  KPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWT 384
            K  G ++T     +ED IVKRH+ GNV    AN L LK+ +H +  +   M +     W 
Sbjct: 1388 KIGGKMITITFHSLEDTIVKRHVMGNVANDMANKLPLKYCSHTICHDQTVMDAALKPNWH 1447

Query: 385  ILDK--IIPSDSDLK 397
             + K  ++PSD++++
Sbjct: 1448 QMTKHVVVPSDAEVE 1462

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489473|ref|XP_001602807.2| PREDICTED: probable methyltransferase-like protein 15 homolog [Nasonia vitripennis]

 Score =  226 bits (576), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/380 (38%), Positives = 206/380 (54%), Gaps = 40/380 (10%)

Query: 23  DFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLND 82
           D  +++R+  +  F       IE++E  ++NL SL++L         P   + +   L  
Sbjct: 134 DLGQHIRDQVKIAFAKGESSKIEDKEKCQRNLESLEKLHT-------PVMLKETIEYLKL 186

Query: 83  SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGK 141
           S  D T++DMT+G G H+R ILE++ +V +  LDRD+ +   AK LA   P +++P+ G+
Sbjct: 187 SPGD-TIVDMTFGAGGHSRKILESVPHVTIFALDRDEVAHNYAKELAEKYPGQVIPLLGR 245

Query: 142 FSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM----SQEGI 196
           FS+LP +L       NSIDG + D G S  Q +   RGF    N  LDMRM      E  
Sbjct: 246 FSELPQLLGKYKVKENSIDGFLFDFGCSSMQFDRPERGFMISKNGPLDMRMDGFRCPEEP 305

Query: 197 TGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRP 256
           T   VL+  DE  L  ILK YGEEKR+++IARAIIE RYTF+ L  T++L +L+ S+  P
Sbjct: 306 TAADVLARADERDLYHILKYYGEEKRAKKIARAIIEARYTFRSLRTTQELAKLIESLF-P 364

Query: 257 SQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYA 316
           S                    +G            +H A K +  LR FVNNELNE+N+ 
Sbjct: 365 SDI--------------NTDQIGR----------FQHSATKTFQALRIFVNNELNEINHG 400

Query: 317 MIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHN-LTVNPLDM 375
           ++IAEK LK  G ++T     +ED IVKRHL+GNV +  AN L L++ N+  +     D+
Sbjct: 401 IVIAEKLLKINGRMITISFHSLEDTIVKRHLSGNVTDSVANQLPLRYRNYGKVWTCKEDI 460

Query: 376 SSLTSSPWTILDKIIPSDSD 395
             LT SPW +L K I S +D
Sbjct: 461 MELTESPWMMLHKHILSPTD 480

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027021|gb|EGI67117.1| Putative S-adenosyl-L-methionine-dependent methyltransferase [Acromyrmex echinatior]

 Score =  222 bits (565), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 190/333 (57%), Gaps = 42/333 (12%)

Query: 88  TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLP 146
           T IDMT+G G H   +LE+  N+K+  LDRD   FE AK L+   P +++P+ GKFS+LP
Sbjct: 16  TYIDMTFGAGGHATKLLEHSPNIKIFALDRDPLGFECAKQLSQRYPGQVIPLLGKFSELP 75

Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM----SQEGITGYQV 201
            +L+  N   NSIDGI+ D G S  Q + ++RGF    +  LDMRM      + +T   V
Sbjct: 76  QLLEPYNIKENSIDGILFDFGCSSMQFDTASRGFSLSKDGPLDMRMDGFRCPKQLTAANV 135

Query: 202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWK 261
           L    E  L +I+K YG+EKR+++IARAII++RY FKKLE T++L +L+ S         
Sbjct: 136 LERATEEDLTRIIKVYGQEKRAKKIARAIIDSRYMFKKLETTKELAQLIEST-------- 187

Query: 262 RACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAE 321
                           +  E+R D     S H A K +  LR FVNNELNE+NY +++A+
Sbjct: 188 ----------------LDGEIRRDSLGRFS-HSATKTFQALRIFVNNELNEINYGILLAQ 230

Query: 322 KYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSS 381
            YLK  G L+T     +ED IVKRH++GN+ ++ AN +ALK+ ++  T +  +   LT  
Sbjct: 231 IYLKLSGCLITISFHSLEDTIVKRHISGNITDNVANTVALKYAHYGKTFDKDEFERLTKI 290

Query: 382 PWTILDK--IIPSDSDL---------KLRVAMK 403
           PW ++ K  +IP+  ++         KLR  MK
Sbjct: 291 PWKMMHKHVLIPTAEEIETNPRSRSAKLRAIMK 323

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112116|ref|XP_001657398.1| s-adenosyl-methyltransferase mraw [Aedes aegypti] gi|108878145|gb|EAT42370.1| AAEL006065-PA [Aedes aegypti]

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 128/321 (39%), Positives = 189/321 (58%), Gaps = 32/321 (9%)

Query: 85  DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFS 143
           D+   +DMT+G G HT+ IL+   N K+I LDRD  + + A  +A   P ++ P+ G+FS
Sbjct: 44  DNELFLDMTFGAGGHTKEILKVAPNAKIIALDRDPTAHDMALAMAKKYPGQIFPILGRFS 103

Query: 144 DLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGI----TG 198
           +LP  L  +N N  SIDGII D G S  Q +  +RGF    N  LDMRM Q+      + 
Sbjct: 104 ELPEQLAKINVNQQSIDGIIFDFGCSSMQFDEGSRGFSISKNGPLDMRMDQDRFPDTPSA 163

Query: 199 YQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQ 258
            ++L+ IDEV LA+ILK YGEEK++++IARAI+ETRY+ KK+E T++L ++V S      
Sbjct: 164 AEILAKIDEVDLARILKIYGEEKQAKKIARAIVETRYSIKKIETTKELADIVQS------ 217

Query: 259 TWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMI 318
                C       + + S      R+D  +  S H A K +  LR FVNNELNE+NY MI
Sbjct: 218 -----C-------LGSGSF-----RLDKLQRPS-HPATKTFQALRIFVNNELNEINYGMI 259

Query: 319 IAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSL 378
           +A++YLK  G ++      +ED IVKRH+ GNV+   AN L LK+ +H ++     M ++
Sbjct: 260 LAQRYLKIGGKMIAITFHSLEDTIVKRHVMGNVLNDMANTLPLKYCSHTISYEHDVMENV 319

Query: 379 TSSPWTILDK--IIPSDSDLK 397
             + W  + K  ++P D +++
Sbjct: 320 MKTSWHQMTKHVVLPGDDEVE 340

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623945|gb|EHJ74895.1| putative s-adenosyl-methyl transferase mraw [Danaus plexippus]

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 224/448 (50%), Gaps = 94/448 (20%)

Query: 23  DFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLND 82
           D  +++R+  +A F   N   ++ E    + L+SL +++++ Y  KY R   +SA+GL+ 
Sbjct: 25  DLGKFIRDKVKAAFEGGNSKNLDSE-LCTRQLSSLNKIADNHYRNKYKRIHDSSATGLSS 83

Query: 83  S--------------------------------------------------SDDVTMIDM 92
                                                              SD+   IDM
Sbjct: 84  EECNLVLSSEVLQYLKEENKVLSRHQLHMKALKYKDHTPVMINEVMKHLKPSDNELYIDM 143

Query: 93  TYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN 151
           T+G G H+R ILE+  N ++I LDRD  ++EKA+ LA   P R++P+ G+FS+LP  LK+
Sbjct: 144 TFGAGGHSRKILES-ANCQLITLDRDPTAYEKARKLAEEYPKRVIPLIGRFSELPEQLKS 202

Query: 152 MNNNFNSIDGIIMDVGISDSQA-NSTRGFKPDSNSLLDMRMSQ----EGITGYQVLSAID 206
           +    +SIDGI+ D G S  Q  N  RGF    N  LDMRM        IT  +VL+  D
Sbjct: 203 IGIKQSSIDGILFDFGCSSMQLDNGERGFSVSKNGFLDMRMDAGRDPSQITAREVLATAD 262

Query: 207 EVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRT 266
           E  L KI K YGEEK++ +IA+ II+ RY  K ++ T++L ++V S              
Sbjct: 263 EHELYKIFKIYGEEKKAAKIAQTIIQARYMIKNIDTTKELVDIVDSC------------- 309

Query: 267 ESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKP 326
                         EVR+D  +    + A KV+  LR FVNNELNE+NY M++++ YLK 
Sbjct: 310 -----------CPDEVRLDKLQRPQSN-ATKVFQALRIFVNNELNEINYGMVLSKYYLKL 357

Query: 327 EGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTIL 386
            G L+T C   +ED IVKRH+ GN+I   AN + L++++  L  +   ++    SPW  +
Sbjct: 358 NGRLVTLCFHSLEDTIVKRHIAGNIINETANPVPLRYLSPMLVQDQDTINQFLDSPWKAI 417

Query: 387 DKI--IPSDSDL---------KLRVAMK 403
           +K   +PS+ ++         +LR A+K
Sbjct: 418 NKHVEVPSEDEVERNPRSRSARLRAAIK 445

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211743|gb|EFN87738.1| Putative S-adenosyl-L-methionine-dependent methyltransferase CG14683 [Harpegnathos saltator]

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/324 (39%), Positives = 184/324 (56%), Gaps = 33/324 (10%)

Query: 82  DSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYG 140
           + S   T IDMT+G G H   +LE+  ++K+  LDRD  + E A+ L+   P +++P+ G
Sbjct: 10  EPSPGKTYIDMTFGAGGHATKLLEHSPDIKIFALDRDSVAHEYAQKLSQKYPGQVIPLLG 69

Query: 141 KFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGY 199
           KFS+LP +LK  N   NSIDG + D G S  Q +   RGF    +  LDMRM     +G 
Sbjct: 70  KFSELPQLLKQHNIGRNSIDGFLFDFGCSSMQFDIGIRGFSLSKDGPLDMRMDGFRCSGQ 129

Query: 200 ----QVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSR 255
                VL    E  LA+I+K YG+EKR+++IARAIIE RY F+KLE TR+L EL+ S   
Sbjct: 130 PTAADVLERATEEDLARIIKFYGQEKRAKKIARAIIEARYMFRKLETTRELAELIEST-- 187

Query: 256 PSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNY 315
                                 +  E+R D     S H A K +  LR FVNNELNE+NY
Sbjct: 188 ----------------------LSDEIRKDNLGRFS-HNATKTFQALRIFVNNELNEINY 224

Query: 316 AMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDM 375
           AM++A  YLK  G L+T     +ED IVKRH++GN+ ++ AN ++LK+ N     +  ++
Sbjct: 225 AMLLARIYLKVTGRLITISFHSLEDTIVKRHISGNITDNVANTISLKYANPGKIFDANEL 284

Query: 376 SSLTSSPWTILDK--IIPSDSDLK 397
             LT +PW ++ K  ++P+  +++
Sbjct: 285 EMLTQTPWKMMHKHVLLPTAEEIE 308

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193659891|ref|XP_001947856.1| PREDICTED: probable S-adenosyl-L-methionine-dependent methyltransferase CG14683-like [Acyrthosiphon pisum]

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 173/310 (55%), Gaps = 31/310 (10%)

Query: 89  MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN 147
           +IDMT+G G HT  IL+      V CLDRD  +   AK L+   P R++P+ GKFSDLP 
Sbjct: 45  IIDMTFGAGGHTERILQENDTTVVYCLDRDPTACAMAKQLSERYPNRVIPLKGKFSDLPV 104

Query: 148 ILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE--GITGYQVLSA 204
           +LKN+    NS DGI+ D G S  Q + ++RGF    N  LDMRM  E   IT   VL+ 
Sbjct: 105 LLKNLGCKMNSFDGILFDFGASSMQFDTASRGFSISKNGPLDMRMDPEEQTITAADVLAK 164

Query: 205 IDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRAC 264
            D+  L KI K YGEEK+S++IA A+IE RY FK L+ TRD  ELV +V           
Sbjct: 165 ADQSDLYKIFKVYGEEKQSKKIANAVIEARYLFKPLKTTRDFCELVQNV----------- 213

Query: 265 RTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYL 324
                           E+R D   H   H A KV+  LR FVNNELNE+N+++++A  YL
Sbjct: 214 -------------CDNEMRSD-MLHRPSHPATKVFQALRIFVNNELNEINHSIVLASHYL 259

Query: 325 KPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWT 384
           K  G+++T     +ED IVKRH+ GN+ E+ AN L LK++N     +   M  +  S W 
Sbjct: 260 KMGGVMVTVAFHSLEDTIVKRHIQGNINENMANTLPLKYINPMQAYDKEFMDVVNDSCWH 319

Query: 385 ILDK--IIPS 392
            + K  I PS
Sbjct: 320 QIHKHVITPS 329

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195389917|ref|XP_002053618.1| GJ23252 [Drosophila virilis] gi|194151704|gb|EDW67138.1| GJ23252 [Drosophila virilis]

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 131/332 (39%), Positives = 189/332 (56%), Gaps = 43/332 (12%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-ND--PRLVPVYGKFSDLP 146
           IDMT+G G HTR +L++  +  V  LDRD  + E A+ ++  ND   RLVP+ GKFS+LP
Sbjct: 56  IDMTFGAGGHTRRLLDSCPDTTVYALDRDPLAHELAQRMSQENDYAGRLVPLLGKFSELP 115

Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM--SQEG-ITGYQVL 202
            +L++++   +S DG++ D G S  Q + + RGF    N  LDMRM   + G I+   VL
Sbjct: 116 QLLQSLDVPRHSFDGMLFDFGCSSMQFDEAARGFSIAHNGPLDMRMDCGRSGSISAADVL 175

Query: 203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
           +  +E  LA+IL+ YGEEK +++IARAI+E R   +++E TR L +LVA+V         
Sbjct: 176 ARAEEADLARILRVYGEEKAAKKIARAIVEARSALQRIETTRQLADLVAAV--------- 226

Query: 263 ACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEK 322
                          +G   R+D R     H A K +  LR FVNNELNE+NY M++A++
Sbjct: 227 ---------------LGDGQRLD-RLQRPAHAATKTFQALRIFVNNELNEINYGMLLAQE 270

Query: 323 YLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSP 382
            L+ +G L+      +ED IVKRH+ GNVIE  AN L LK+  H+LT +P  + S   S 
Sbjct: 271 LLRAQGRLVAITFHSLEDTIVKRHINGNVIEGVANPLPLKYCGHDLTHDPELLESFVQSN 330

Query: 383 WTILDK--IIPSDSDL---------KLRVAMK 403
           W  L +  I P  +++         KLR A+K
Sbjct: 331 WRQLHRHVIQPDATEIARNSRSRSAKLRAAIK 362

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	413
FB|FBgn0037822	356	CG14683 [Drosophila melanogast	0.401	0.466	0.387	3.3e-49
UNIPROTKB|F1NEP7	342	METTL15 "Uncharacterized prote	0.481	0.581	0.320	1.6e-36
UNIPROTKB|E1BXC3	284	METTL15 "Uncharacterized prote	0.389	0.566	0.339	7.9e-34
UNIPROTKB|P60390	313	rsmH "16S rRNA m4C1402 methylt	0.464	0.613	0.359	1.6e-32
UNIPROTKB|A0JN95	407	METTL15 "Probable methyltransf	0.445	0.452	0.340	7.8e-31
UNIPROTKB|Q5LU79	331	rsmH "Ribosomal RNA small subu	0.382	0.477	0.394	8.1e-26
TIGR_CMR|SPO_1179	331	SPO_1179 "S-adenosyl-methyltra	0.382	0.477	0.394	8.1e-26
UNIPROTKB|Q87WX7	313	rsmH "Ribosomal RNA small subu	0.416	0.549	0.311	8.7e-26
UNIPROTKB|Q47VQ1	316	rsmH "Ribosomal RNA small subu	0.447	0.585	0.328	1.1e-24
TIGR_CMR|CPS_4473	316	CPS_4473 "S-adenosyl-methyltra	0.447	0.585	0.328	1.1e-24

FB|FBgn0037822 CG14683 [Drosophila melanogaster (taxid:7227)]

 Score = 315 (115.9 bits), Expect = 3.3e-49, Sum P(2) = 3.3e-49
 Identities = 67/173 (38%), Positives = 103/173 (59%)

Query:    88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSD 144
             T  DMT+G G HTR +LE     KV  LDRD  + + A+ ++ ++    RL+P+ GKFSD
Sbjct:    46 TYFDMTFGAGGHTRRLLEKCPEAKVYALDRDPLAHQLARDMSESEEFKGRLIPLLGKFSD 105

Query:   145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMS---QEGITGYQ 200
             LP + K      NS+DG++ D G S  Q + + RGF    +  LDMRM      G+T   
Sbjct:   106 LPKLFKEHGLAKNSVDGMLFDFGCSSMQFDEAVRGFSISRDGPLDMRMDGGHSGGVTAAD 165

Query:   201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASV 253
             VL+ ++E  L KIL+ YGEEK +++IAR +++ R    K+E T+ L +++ ++
Sbjct:   166 VLANVEEGDLVKILRMYGEEKAAKKIARGLVDARNALFKIETTKQLADIIENI 218

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1NEP7 METTL15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 277 (102.6 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
 Identities = 66/206 (32%), Positives = 113/206 (54%)

Query:    90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVP-VYGKFSDLPNI 148
             +DMT+G G H+  +LE   N+ +  LDRD  +++ A+ L+ + P+ +  + G+FS    +
Sbjct:    28 LDMTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEAL 87

Query:   149 LKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQVLS 203
             L +      ++DG+++D G S  Q ++  RGF    +  LDMRM  +      T   V++
Sbjct:    88 LISSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVN 147

Query:   204 AIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRA 263
             A+D+ +LA IL+TYGEEK +++IA AI++ R  +  + RT+ L  +VA     S  + R 
Sbjct:   148 ALDQQALASILRTYGEEKHAKKIASAIVQARSIYP-ITRTQQLASIVAGAFPASALYARK 206

Query:   264 CRTESLQWIATASVVGTEVRVDPRKH 289
                +    IAT +  G  + V+   H
Sbjct:   207 DLLQRPTHIATKTFQGLRIFVNDELH 232

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BXC3 METTL15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 7.9e-34, Sum P(2) = 7.9e-34
 Identities = 57/168 (33%), Positives = 99/168 (58%)

Query:    92 MTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVP-VYGKFSDLPNILK 150
             MT+G G H+  +LE   N+ +  LDRD  +++ A+ L+ + P+ +  + G+FS    +L 
Sbjct:     1 MTFGAGGHSTALLEKASNITIYALDRDPTAYKIAQQLSESYPKQIQALLGQFSQSEALLI 60

Query:   151 NMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQVLSAI 205
             +      ++DG+++D G S  Q ++  RGF    +  LDMRM  +      T   V++A+
Sbjct:    61 SSGVEPGTLDGVLLDAGCSSMQFDTPERGFSLQKDGPLDMRMDSDRYPDMPTAADVVNAL 120

Query:   206 DEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASV 253
             D+ +LA IL+TYGEEK +++IA AI++ R  +  + RT+ L  +VA +
Sbjct:   121 DQQALASILRTYGEEKHAKKIASAIVQARSIYP-ITRTQQLASIVAGI 167

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|P60390 rsmH "16S rRNA m4C1402 methyltransferase" [Escherichia coli K-12 (taxid:83333)]

 Score = 285 (105.4 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 73/203 (35%), Positives = 120/203 (59%)

Query:    76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNV-KVICLDRDKESFEKAKTLAANDPR 134
             + +GLN   D +  ID T+G G H+RLIL  +G   +++ +DRD ++   AKT+  +DPR
Sbjct:    15 AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 71

Query:   135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQ 193
                ++G FS L   +    +    IDGI++D+G+S  Q +   RGF    +  LDMRM  
Sbjct:    72 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 130

Query:   194 -EGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
               G +  + L   +E  +A +LKTYGEE+ +++IARAI+E R   + + RT++L E+VA+
Sbjct:   131 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 189

Query:   253 VSRPSQTWKR-ACRT-ESLQ-WI 272
              +     +K  A RT ++++ W+
Sbjct:   190 ATPVKDKFKHPATRTFQAVRIWV 212

GO:0071424 "rRNA (cytosine-N4-)-methyltransferase activity" evidence=IDA

GO:0070475 "rRNA base methylation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

UNIPROTKB|A0JN95 METTL15 "Probable methyltransferase-like protein 15" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 7.8e-31, Sum P(2) = 7.8e-31
 Identities = 65/191 (34%), Positives = 106/191 (55%)

Query:    90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSDLPNI 148
             +DMT+G G HTR IL+   ++ +  LDRD  ++  A+ L+   P+ +  + G+FS    +
Sbjct:    93 LDMTFGSGGHTRAILQKEPDITLYALDRDPTAYAIAEQLSELYPKQIRAILGQFSQAEAL 152

Query:   149 LKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQEGI----TGYQVLS 203
             L        ++DG+++D+G S  Q ++  RGF    +  LDMRM  +      T   V++
Sbjct:   153 LMKAGVQPGTLDGVLLDLGCSSMQLDTPERGFSLRKDGPLDMRMDGDRYPDMPTAADVVN 212

Query:   204 AIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRA 263
             A+D+ +LA IL+ YGEEK +++IA AII+ R  +  + RT+ L  +VA    PS  + R 
Sbjct:   213 ALDQQALASILRAYGEEKHAKKIASAIIQARGLYP-ITRTQQLASIVAGAFPPSALYARK 271

Query:   264 CRTESLQWIAT 274
                +    IAT
Sbjct:   272 DLLQRPTHIAT 282

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5LU79 rsmH "Ribosomal RNA small subunit methyltransferase H" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 233 (87.1 bits), Expect = 8.1e-26, Sum P(2) = 8.1e-26
 Identities = 67/170 (39%), Positives = 96/170 (56%)

Query:    90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI 148
             +D T+G G +TR +L   G  +VI +DRD  +FE A   A +   RLV   G FS     
Sbjct:    33 LDGTFGAGGYTRGLLA-AGADRVIAVDRDPLAFELAAGWAKDYGDRLVMQQGVFS----- 86

Query:   149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
                M+   + +DG+++D+G+S  Q + + RGF    +  LDMRMSQEG +   +++   E
Sbjct:    87 --RMDEYASDLDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMRMSQEGPSAADLVNTATE 144

Query:   208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS-VSRP 256
               LA IL  YGEE+ SR+IARAI++ R     +E T  L  LV S + RP
Sbjct:   145 ADLADILFHYGEERASRRIARAIVKARAE-APIETTLQLAALVESCLPRP 193

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_1179 SPO_1179 "S-adenosyl-methyltransferase MraW" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 233 (87.1 bits), Expect = 8.1e-26, Sum P(2) = 8.1e-26
 Identities = 67/170 (39%), Positives = 96/170 (56%)

Query:    90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNI 148
             +D T+G G +TR +L   G  +VI +DRD  +FE A   A +   RLV   G FS     
Sbjct:    33 LDGTFGAGGYTRGLLA-AGADRVIAVDRDPLAFELAAGWAKDYGDRLVMQQGVFS----- 86

Query:   149 LKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDE 207
                M+   + +DG+++D+G+S  Q + + RGF    +  LDMRMSQEG +   +++   E
Sbjct:    87 --RMDEYASDLDGVVLDLGVSSMQLDLAERGFSFMKDGPLDMRMSQEGPSAADLVNTATE 144

Query:   208 VSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS-VSRP 256
               LA IL  YGEE+ SR+IARAI++ R     +E T  L  LV S + RP
Sbjct:   145 ADLADILFHYGEERASRRIARAIVKARAE-APIETTLQLAALVESCLPRP 193

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

UNIPROTKB|Q87WX7 rsmH "Ribosomal RNA small subunit methyltransferase H" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 237 (88.5 bits), Expect = 8.7e-26, Sum P(2) = 8.7e-26
 Identities = 56/180 (31%), Positives = 104/180 (57%)

Query:    86 DVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD 144
             D   +D T+G G H+RLIL ++G + +++  D+D ++    + LAA D R V V   F++
Sbjct:    24 DGCYLDGTFGRGGHSRLILNHLGPDGRLLGFDKDPQAIATGQALAAEDGRFVIVQRSFAE 83

Query:   145 LPNILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRMSQ-EGITGYQVL 202
             L +  + +      + GI++D+G+S  Q +   RGF   ++  LDMRM    G++  + +
Sbjct:    84 LGSQAQELGLA-GKVSGILLDLGVSSPQLDDPERGFSFMNDGPLDMRMDPTRGVSAAEFI 142

Query:   203 SAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKR 262
             ++     +A++ K YGEE+ ++++A A+++ R   +  ERT DL E V  V+ P+  W++
Sbjct:   143 ASAPAEEIARVFKEYGEERFAKRMANAVVQRR-EIQPFERTADLAE-VLKVANPA--WEK 198

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q47VQ1 rsmH "Ribosomal RNA small subunit methyltransferase H" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 231 (86.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 63/192 (32%), Positives = 104/192 (54%)

Query:    84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF 142
             +DD   ID T+G G H+ +IL  +  N ++I +DRD  +   A+    +D R +  +  F
Sbjct:    22 TDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAAEKFK-DDKRFLIEHQGF 80

Query:   143 SDLPNILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRM-SQEGITGYQ 200
             + L  I +  +     +DGI++D+G+S  Q +   RGF    +  LDMRM + +G T  +
Sbjct:    81 AALAEIAEK-HELTGKVDGILLDLGVSSPQLDEAERGFSFMKDGPLDMRMDTSKGQTAAE 139

Query:   201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
              L+  D   +  +L+T+GEEK + +IA AI++TR     L RT  L +L+ + + P +  
Sbjct:   140 WLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREE-TPLTRTSQLAKLIKTTA-PQREI 197

Query:   261 KRACRTESLQWI 272
             K+   T S Q I
Sbjct:   198 KKHPATRSFQAI 209

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4473 CPS_4473 "S-adenosyl-methyltransferase MraW" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 231 (86.4 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 63/192 (32%), Positives = 104/192 (54%)

Query:    84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF 142
             +DD   ID T+G G H+ +IL  +  N ++I +DRD  +   A+    +D R +  +  F
Sbjct:    22 TDDGCYIDCTFGRGGHSSVILSKLSDNGRLIAIDRDPTAITAAEKFK-DDKRFLIEHQGF 80

Query:   143 SDLPNILKNMNNNFNSIDGIIMDVGISDSQANST-RGFKPDSNSLLDMRM-SQEGITGYQ 200
             + L  I +  +     +DGI++D+G+S  Q +   RGF    +  LDMRM + +G T  +
Sbjct:    81 AALAEIAEK-HELTGKVDGILLDLGVSSPQLDEAERGFSFMKDGPLDMRMDTSKGQTAAE 139

Query:   201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
              L+  D   +  +L+T+GEEK + +IA AI++TR     L RT  L +L+ + + P +  
Sbjct:   140 WLAVADVEDITWVLRTFGEEKHAWRIANAIVDTREE-TPLTRTSQLAKLIKTTA-PQREI 197

Query:   261 KRACRTESLQWI 272
             K+   T S Q I
Sbjct:   198 KKHPATRSFQAI 209

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VGY5	MET15_DROME	2, ., 1, ., 1, ., -	0.3592	0.7046	0.8174	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	413
PRK00050	296	PRK00050, PRK00050, 16S rRNA m(4)C1402 methyltrans	4e-54
COG0275	314	COG0275, COG0275, Predicted S-adenosylmethionine-d	3e-53
pfam01795	310	pfam01795, Methyltransf_5, MraW methylase family	1e-44
TIGR00006	307	TIGR00006, TIGR00006, 16S rRNA (cytosine(1402)-N(4	1e-40

>gnl|CDD|234597 PRK00050, PRK00050, 16S rRNA m(4)C1402 methyltranserfase; Provisional

 Score =  181 bits (461), Expect = 4e-54
 Identities = 106/344 (30%), Positives = 153/344 (44%), Gaps = 78/344 (22%)

Query: 79  GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVP 137
            L    D +  +D T+G G H+R ILE +G   ++I +DRD ++   AK       R   
Sbjct: 14  ALAIKPDGI-YVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTL 72

Query: 138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQ-ANSTRGFKPDSNSLLDMRMSQE-G 195
           V+G FS+L  +L         +DGI++D+G+S  Q  ++ RGF    +  LDMRM Q  G
Sbjct: 73  VHGNFSNLKEVLAE---GLGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQG 129

Query: 196 ITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSR 255
           +T  +V++   E  LA+I K YGEE+ +R+IARAI+E R   K +  T +L E++ S   
Sbjct: 130 LTAAEVVNTYSEEELARIFKEYGEERFARRIARAIVEARPK-KPITTTGELAEIIKSAV- 187

Query: 256 PSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNY 315
                                         P +    H A + +  LR  VN+EL EL  
Sbjct: 188 ------------------------------PPRRKGIHPATRTFQALRIEVNDELEELER 217

Query: 316 AMIIAEKYLKPEGLLLTKCNSIV-----EDKIVKRHLTGNVIEHCANDLALKFVNHNLTV 370
           A+  A   LKP G L     +++     ED+IVKR         C N   LK        
Sbjct: 218 ALEAALDLLKPGGRL-----AVISFHSLEDRIVKRFFRELSKGCCGNKPKLK-------- 264

Query: 371 NPLDMSSLTSSPWTILDKIIPSDSDL---------KLRVAMKKE 405
                  LT  P      I PS+ ++         KLRVA + E
Sbjct: 265 ------LLTKKP------IKPSEEEIAANPRARSAKLRVAERLE 296

Length = 296

>gnl|CDD|223352 COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

 Score =  179 bits (457), Expect = 3e-53
 Identities = 102/339 (30%), Positives = 155/339 (45%), Gaps = 66/339 (19%)

Query: 85  DDVTMIDMTYGDGNHTRLILENIGNVK-VICLDRDKESFEKAKT-LAANDPRLVPVYGKF 142
            D   ID T G G H+R ILE + ++  +I +DRD ++   AK  L   D R+  V+G F
Sbjct: 23  PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNF 82

Query: 143 SDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE-GITGYQ 200
           ++L   LK +      +DGI++D+G+S  Q + + RGF    +  LDMRM Q  G++  +
Sbjct: 83  ANLAEALKELGIG--KVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAE 140

Query: 201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
           V++   E  LA+I K YGEE+ +++IARAI+E R   K +E T++L E++ S        
Sbjct: 141 VVNTYSEEDLARIFKEYGEERFAKRIARAIVERRKK-KPIETTKELAEIIKSAIPA---- 195

Query: 261 KRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIA 320
                                      K    H A + +  +R +VN+EL EL  A+  A
Sbjct: 196 -------------------------KEKRKKIHPATRTFQAIRIYVNDELEELEEALEAA 230

Query: 321 EKYLKPEGLLLTKCNSIV-----EDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDM 375
              LKP G L     +++     ED+IVK              L +           L  
Sbjct: 231 LDLLKPGGRL-----AVISFHSLEDRIVKNFFKELSKPGVPKGLPVT-----EEGPALKF 280

Query: 376 SSLTSSPWTILDKIIPSDSDL---------KLRVAMKKE 405
             +T  P      I+PS+ ++         KLRVA K E
Sbjct: 281 KLITKKP------IMPSEEEIEANPRARSAKLRVAEKIE 313

Length = 314

>gnl|CDD|216706 pfam01795, Methyltransf_5, MraW methylase family

 Score =  157 bits (398), Expect = 1e-44
 Identities = 99/341 (29%), Positives = 150/341 (43%), Gaps = 58/341 (17%)

Query: 78  SGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKT-LAANDPRL 135
             LN   D +  ID T G G H+  ILE +    ++I +DRD ++   AK  L     R+
Sbjct: 14  ELLNIKPDGI-YIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFKGRV 72

Query: 136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE 194
             ++  F++L   LK        +DGI+ D+G+S  Q + + RGF    ++ LDMRM Q 
Sbjct: 73  TLIHSNFANLFAYLKE--LGVGKVDGILFDLGVSSPQLDGAERGFSFKHDAPLDMRMDQS 130

Query: 195 -GITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASV 253
            G+T  +VL+   E  LA+I K YGEE+ S++IARAI+E R   K +E T++L E++   
Sbjct: 131 AGLTAAEVLNTYSEEDLARIFKKYGEERFSKRIARAIVERRKK-KPIETTKELAEIIKKA 189

Query: 254 SRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNEL 313
                                             K    H A + +  +R +VN+EL  L
Sbjct: 190 VPA-----------------------------KAKRKKIHPATRTFQAIRIYVNDELESL 220

Query: 314 NYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLAL-KFVNHNLTVNP 372
             A+  A   L P G L       +ED+IVK     N     +    +   +   L    
Sbjct: 221 KEALEQAPDLLAPGGRLSVISFHSLEDRIVK-----NFFREYSKGCQVPAGLPVILEGLE 275

Query: 373 LDMSSLTSSPWTILDKIIPSDSDL---------KLRVAMKK 404
             +  +T  P      I+PS+ ++         KLRVA K 
Sbjct: 276 PLLKIITKKP------ILPSEEEIEENPRSRSAKLRVAEKI 310

Members of this family are probably SAM dependent methyltransferases based on Escherichia coli rsmH. This family appears to be related to pfam01596. Length = 310

>gnl|CDD|232778 TIGR00006, TIGR00006, 16S rRNA (cytosine(1402)-N(4))-methyltransferase

 Score =  146 bits (369), Expect = 1e-40
 Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 35/262 (13%)

Query: 86  DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL 145
           D   ID T G G H++ IL  +G  ++I +DRD ++   AK +  +D R V ++  F++ 
Sbjct: 21  DGIYIDGTLGRGGHSKAILSQLGEGRLIGIDRDPQAIAFAKEIL-SDLRFVIIHDNFANF 79

Query: 146 PNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQE-GITGYQVLS 203
              LK +      IDGI++D+G+S  Q +   RGF    +  LDMRM Q   ++  ++L+
Sbjct: 80  FEYLKELLVT--KIDGILVDLGVSSPQLDDPERGFSFMHDGPLDMRMDQSQKLSAAEILN 137

Query: 204 AIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRA 263
              E  L  ILK YGEE+ S++IARAI+E R   K ++ T++L E+++            
Sbjct: 138 TYSEEDLEWILKKYGEERFSKRIARAIVERRKK-KPIQTTKELAEVISKAVPG------- 189

Query: 264 CRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKY 323
                                   K+ S H A +V+  +R +VN+EL EL  A+  A   
Sbjct: 190 ----------------------FSKYKSIHPATRVFQAIRIYVNDELEELEEALQFAPNL 227

Query: 324 LKPEGLLLTKCNSIVEDKIVKR 345
           L P G L       +ED+IVK 
Sbjct: 228 LAPGGRLSIISFHSLEDRIVKN 249

This model describes RsmH, a 16S rRNA methyltransferase. Previously, this gene was designated MraW, known to be essential in E. coli and widely conserved in bacteria [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	413
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	100.0
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	100.0
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	100.0
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	100.0
KOG2782|consensus	303		100.0
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.68
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.55
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.5
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.44
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.41
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.37
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.37
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.37
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.37
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.35
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.34
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.29
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.27
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.26
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.22
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.22
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.19
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.08
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.06
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.05
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.05
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.04
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.02
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.01
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.0
PRK07402	196	precorrin-6B methylase; Provisional	98.0
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	97.97
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.94
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	97.93
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.93
PLN02233	261	ubiquinone biosynthesis methyltransferase	97.93
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.93
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.92
PRK08317	241	hypothetical protein; Provisional	97.91
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.9
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	97.88
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.88
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	97.86
PLN02244	340	tocopherol O-methyltransferase	97.86
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.85
PRK04266	226	fibrillarin; Provisional	97.84
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	97.82
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	97.82
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	97.81
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.76
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.76
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.73
PRK14967	223	putative methyltransferase; Provisional	97.71
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.69
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.69
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	97.68
PRK14968	188	putative methyltransferase; Provisional	97.66
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.64
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.64
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	97.64
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	97.61
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	97.61
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.6
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.57
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.57
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.57
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.56
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.55
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.55
PRK06202	232	hypothetical protein; Provisional	97.54
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	97.54
PTZ00146	293	fibrillarin; Provisional	97.53
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.52
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.5
PHA03411	279	putative methyltransferase; Provisional	97.48
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	97.45
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.43
KOG1122|consensus	460		97.41
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.4
PLN02336	475	phosphoethanolamine N-methyltransferase	97.4
KOG2730|consensus	263		97.39
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	97.39
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.36
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	97.36
PRK06922	677	hypothetical protein; Provisional	97.35
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.35
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.35
COG4122	219	Predicted O-methyltransferase [General function pr	97.34
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.33
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.32
COG2890	280	HemK Methylase of polypeptide chain release factor	97.3
PRK11207	197	tellurite resistance protein TehB; Provisional	97.29
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.23
TIGR00438	188	rrmJ cell division protein FtsJ.	97.23
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.21
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.19
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.15
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.11
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.11
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.09
TIGR03438	301	probable methyltransferase. This model represents	97.09
COG4123	248	Predicted O-methyltransferase [General function pr	97.07
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.06
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	97.05
PRK05785	226	hypothetical protein; Provisional	97.04
PRK04457	262	spermidine synthase; Provisional	97.02
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.01
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.01
PLN02476	278	O-methyltransferase	96.98
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.98
PLN03075	296	nicotianamine synthase; Provisional	96.96
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.93
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	96.91
PRK12335	287	tellurite resistance protein TehB; Provisional	96.9
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	96.9
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.89
PLN02585	315	magnesium protoporphyrin IX methyltransferase	96.85
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	96.81
PRK10742	250	putative methyltransferase; Provisional	96.8
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	96.79
PRK00811	283	spermidine synthase; Provisional	96.78
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.74
PLN02589	247	caffeoyl-CoA O-methyltransferase	96.69
PLN02336	475	phosphoethanolamine N-methyltransferase	96.65
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.64
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	96.64
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	96.62
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.62
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.6
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	96.57
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.57
PLN02490	340	MPBQ/MSBQ methyltransferase	96.56
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.45
KOG2198|consensus	375		96.43
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	96.39
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.35
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	96.34
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.29
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	96.28
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	96.25
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.25
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	96.18
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.14
KOG0820|consensus	315		96.1
COG2520	341	Predicted methyltransferase [General function pred	96.09
PHA03412	241	putative methyltransferase; Provisional	96.06
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.05
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.05
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	96.01
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.95
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	95.95
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.91
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.86
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	95.83
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	95.8
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	95.79
KOG3420|consensus	185		95.75
KOG2915|consensus	314		95.75
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	95.68
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.68
KOG2904|consensus	328		95.64
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.57
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	95.5
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	95.49
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.48
PRK11524	284	putative methyltransferase; Provisional	95.46
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	95.41
PLN02366	308	spermidine synthase	95.36
PRK01581	374	speE spermidine synthase; Validated	95.35
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.35
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	95.16
KOG2360|consensus	413		95.13
PRK03612	521	spermidine synthase; Provisional	95.07
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	95.0
PLN02672	1082	methionine S-methyltransferase	95.0
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	94.97
KOG1663|consensus	237		94.87
KOG1540|consensus	296		94.87
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	94.81
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	94.79
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	94.7
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	94.62
PRK13256	226	thiopurine S-methyltransferase; Reviewed	94.5
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	94.44
KOG1541|consensus	270		94.24
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.22
KOG3191|consensus	209		94.22
PF13679	141	Methyltransf_32: Methyltransferase domain	93.8
COG1041	347	Predicted DNA modification methylase [DNA replicat	93.75
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	93.67
PLN02823	336	spermine synthase	93.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	93.49
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	93.02
PRK04148	134	hypothetical protein; Provisional	92.79
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	92.72
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.71
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	92.39
COG0742	187	N6-adenine-specific methylase [DNA replication, re	91.89
KOG2187|consensus	534		91.87
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	91.81
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	91.32
KOG2361|consensus	264		91.29
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.0
COG2521	287	Predicted archaeal methyltransferase [General func	90.66
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	90.56
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	89.56
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	89.24
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	88.91
PRK13699	227	putative methylase; Provisional	88.91
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	87.71
KOG3010|consensus	261		87.63
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	87.35
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	87.33
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	87.02
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	86.84
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	86.5
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	86.25
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	84.64
PF12836	65	HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE	84.55
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	82.57
PRK00536	262	speE spermidine synthase; Provisional	81.34
PRK12939	250	short chain dehydrogenase; Provisional	80.77
PRK06194	287	hypothetical protein; Provisional	80.32
PRK07478	254	short chain dehydrogenase; Provisional	80.29

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.6e-108  Score=806.08  Aligned_cols=294  Identities=34%  Similarity=0.519  Sum_probs=275.6

Q ss_pred             CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCC
Q psy7191          66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFS  143 (413)
Q Consensus        66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs  143 (413)
                      ..|+|||++|++++|. ++|+++|||||||+||||.+||+++|. ++|||+|+||+||+.|++++..|. ||+++|+||+
T Consensus         5 ~~HipVLl~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~   83 (314)
T COG0275           5 FRHIPVLLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA   83 (314)
T ss_pred             CCccchHHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence            4699999999999998 999999999999999999999999974 889999999999999999998876 9999999999


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCc
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEK  221 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~  221 (413)
                      ++...+.+.++  ++|||||||||||||||| ++|||||++|||||||||+ +++||+||||+|++++|++||++||||+
T Consensus        84 ~l~~~l~~~~i--~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr  161 (314)
T COG0275          84 NLAEALKELGI--GKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEER  161 (314)
T ss_pred             HHHHHHHhcCC--CceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHh
Confidence            99999999886  479999999999999999 9999999999999999998 9999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHH
Q psy7191         222 RSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNG  301 (413)
Q Consensus       222 ~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQA  301 (413)
                      +|++||++||++| +.+||+||.||+++|++++|...      ++                       +++|||||||||
T Consensus       162 ~arrIA~aIv~~R-~~~pi~tT~eLaeiI~~~~p~~~------~~-----------------------k~~hPAtr~FQA  211 (314)
T COG0275         162 FAKRIARAIVERR-KKKPIETTKELAEIIKSAIPAKE------KR-----------------------KKIHPATRTFQA  211 (314)
T ss_pred             hHHHHHHHHHHHh-ccCCCccHHHHHHHHHHhCCchh------cc-----------------------cCCCcchhhhhh
Confidence            9999999999999 89999999999999999999753      22                       568999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCC
Q psy7191         302 LRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSS  381 (413)
Q Consensus       302 LRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (413)
                      |||+||+||++|+.+|..|+++|+|||||+|||||||||||||+||++++..++|..+|++.|++             ..
T Consensus       212 iRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ff~~~s~~~~p~~lP~~~~~~-------------~~  278 (314)
T COG0275         212 IRIYVNDELEELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFFKELSKPGVPKGLPVTEEGP-------------AL  278 (314)
T ss_pred             heeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHHHHHhcccCCCCCCCcccccc-------------cc
Confidence            99999999999999999999999999999999999999999999999998877899999876542             12


Q ss_pred             Cceeecc--cCCCccce---------eeeeEEeec
Q psy7191         382 PWTILDK--IIPSDSDL---------KLRVAMKKE  405 (413)
Q Consensus       382 ~~~~itk--i~Ps~eEi---------KLRv~~k~~  405 (413)
                      .++++||  |+||++|+         ||||++|+.
T Consensus       279 ~~~~itkK~i~ps~~Ei~~NpRsRSAkLRv~ek~~  313 (314)
T COG0275         279 KFKLITKKPIMPSEEEIEANPRARSAKLRVAEKIE  313 (314)
T ss_pred             hhhhccCCCcCCCHHHHHhCcchhhhHHHhhhhhc
Confidence            2688887  99999999         999999874

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=100.00  E-value=1.4e-106  Score=799.97  Aligned_cols=293  Identities=35%  Similarity=0.554  Sum_probs=230.9

Q ss_pred             CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191          66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD  144 (413)
Q Consensus        66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~  144 (413)
                      ..|+|||++||++.|. ++++++|||||||+||||.+||+++|+++|||||+||+|++.|+++++.+. |+.++++||++
T Consensus         2 ~~H~PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    2 FYHIPVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             SS---TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             CceecccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            3699999999999998 999999999999999999999999988999999999999999999988775 99999999999


Q ss_pred             hHHHHHhc-CCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCc
Q psy7191         145 LPNILKNM-NNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEK  221 (413)
Q Consensus       145 l~~~L~~~-~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~  221 (413)
                      +.+++.+. ++  ..|||||||||||||||| |+|||||+.|||||||||+ +++||++|||+||+++|++||++||||+
T Consensus        81 l~~~l~~~~~~--~~~dgiL~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tAa~ilN~~se~~L~~I~~~yGee~  158 (310)
T PF01795_consen   81 LDEYLKELNGI--NKVDGILFDLGVSSMQLDDPERGFSFRSDGPLDMRMDPSQGLTAADILNTYSEEELARIFREYGEEK  158 (310)
T ss_dssp             HHHHHHHTTTT--S-EEEEEEE-S--HHHHHTGGGSSSSSS--BS---SSTTSS--HHHHHHHS-HHHHHHHHHHHH--T
T ss_pred             HHHHHHHccCC--CccCEEEEccccCHHHhCCCCCCCCCCCCCCCcccccccccccHHHHHHhcCHHHHHHHHHhcCchh
Confidence            99999998 65  479999999999999999 9999999999999999999 8999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHH
Q psy7191         222 RSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNG  301 (413)
Q Consensus       222 ~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQA  301 (413)
                      +|++||++||++| +.+||+||.||+++|++++|...      ++                       +++|||||||||
T Consensus       159 ~a~~IA~~Iv~~R-~~~pi~tT~~L~~iI~~~~~~~~------~~-----------------------~~~hpatr~FQA  208 (310)
T PF01795_consen  159 FARRIARAIVEAR-KKKPITTTKELAEIIEKAVPKKR------RR-----------------------RKIHPATRVFQA  208 (310)
T ss_dssp             THHHHHHHHHHHH-HHSS--BHHHHHHHHHHHS-HHH------CC------------------------SS-TTHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCccc------cc-----------------------ccCCHHHHHHHH
Confidence            9999999999999 78999999999999999998642      22                       467999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccc-cccccchhhhhcccCcCCCCcCCcCCC
Q psy7191         302 LRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIE-HCANDLALKFVNHNLTVNPLDMSSLTS  380 (413)
Q Consensus       302 LRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (413)
                      |||+||+||++|+.+|+.++++|+|||||+|||||||||||||++|+++... .||+.+|+|.|++             .
T Consensus       209 LRI~VN~EL~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~~~~~~~~p~~lp~~~~~~-------------~  275 (310)
T PF01795_consen  209 LRIAVNDELEELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRELAKSCKCPPGLPVCECGK-------------H  275 (310)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHCCSSC----------------------------
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHHhcccCCCccccccccccc-------------c
Confidence            9999999999999999999999999999999999999999999999998876 4788999998876             4


Q ss_pred             CCceeecc--cCCCccce---------eeeeEEee
Q psy7191         381 SPWTILDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       381 ~~~~~itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                      +.|+++||  |+||++||         ||||++|+
T Consensus       276 ~~~~~i~kk~i~ps~~Ei~~NpRsRSAkLRv~ek~  310 (310)
T PF01795_consen  276 PKFKLITKKPITPSEEEIEENPRSRSAKLRVAEKI  310 (310)
T ss_dssp             ---EESESS-B---HHHHHH-GGGTT-EEEEEEE-
T ss_pred             cceEEccCCccCCChhhhhcCCchHhhhhheEEeC
Confidence            56999998  99999999         99999985

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=100.00  E-value=5.4e-105  Score=788.04  Aligned_cols=290  Identities=34%  Similarity=0.500  Sum_probs=270.4

Q ss_pred             CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191          66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD  144 (413)
Q Consensus        66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~  144 (413)
                      ..|+|||++|++++|. ++++++|||||||+||||.+||+.+|+|+|||||+||.|++.|+++++.|. |++++++||++
T Consensus         2 ~~H~pVll~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         2 FFHQSVLLDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             CCCcchhHHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            3699999999999997 999999999999999999999999877999999999999999999887775 99999999999


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCch
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEKR  222 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~~  222 (413)
                      +.+++.+.++.  .|||||||||||||||| ++|||||+.|||||||||+ +++||++|||+|++++|++||++||||++
T Consensus        81 l~~~l~~~~~~--~vDgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~~ln~~~e~~L~~i~~~yGEe~~  158 (305)
T TIGR00006        81 FFEHLDELLVT--KIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSQKLSAAEILNTYSEEDLERILKKYGEEKF  158 (305)
T ss_pred             HHHHHHhcCCC--cccEEEEeccCCHhhcCCCCCCCccCCCCCcccccCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcch
Confidence            99999888764  69999999999999999 9999999999999999999 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHH
Q psy7191         223 SRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGL  302 (413)
Q Consensus       223 a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQAL  302 (413)
                      |++||++||++| +.+||+||.||+++|++++|...      ++                       +++||||||||||
T Consensus       159 a~~IA~~Iv~~R-~~~~i~tt~~L~~ii~~~~p~~~------~~-----------------------~~~hpatr~FQAL  208 (305)
T TIGR00006       159 SKRIARAIVERR-KKKPIQTTKELAELISKAVPGFS------KH-----------------------KSIHPATRVFQAI  208 (305)
T ss_pred             HHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHcCccc------cc-----------------------cCCCcHHHHHHHH
Confidence            999999999999 78999999999999999998542      21                       3469999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCC
Q psy7191         303 RRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSP  382 (413)
Q Consensus       303 RI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (413)
                      ||+||+||++|+++|+.++++|+|||||+|||||||||||||++|+++...++|+.+|+|.|+                .
T Consensus       209 RI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~----------------~  272 (305)
T TIGR00006       209 RIYVNDELEELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKNFFRELSKFPQPPGLPVKETP----------------L  272 (305)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccCCCCCCCccccc----------------c
Confidence            999999999999999999999999999999999999999999999998766667778876442                4


Q ss_pred             ceeecc--cCCCccce---------eeeeEEee
Q psy7191         383 WTILDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       383 ~~~itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                      |+++||  |+||++||         ||||++|+
T Consensus       273 ~~~lt~k~i~ps~~Ei~~NpRsRSAkLRv~~k~  305 (305)
T TIGR00006       273 YALITKKPITPSEEEIKENPRSRSAKLRVAEKK  305 (305)
T ss_pred             eeEccCCCcCCCHHHHHhCccHHhhhheeEEeC
Confidence            889997  99999999         99999984

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=100.00  E-value=3.2e-98  Score=737.62  Aligned_cols=280  Identities=37%  Similarity=0.556  Sum_probs=259.0

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL  145 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l  145 (413)
                      .|+|||++|+++.|. ++|+++|||||||+||||.+||+.+| +++|||||+||+|++.|+++++..+|+++++++|+++
T Consensus         2 ~H~pVll~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l   80 (296)
T PRK00050          2 KHIPVLLDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNL   80 (296)
T ss_pred             CCccccHHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHH
Confidence            699999999999997 89999999999999999999999995 7999999999999999998876534999999999999


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCchH
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEKRS  223 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a  223 (413)
                      ..++.+ ++.  .|||||||||||||||| ++|||||.+|||||||||+ +++||+||||+|++++|++||++||||++|
T Consensus        81 ~~~l~~-~~~--~vDgIl~DLGvSs~Qld~~~RGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~i~~~yGee~~a  157 (296)
T PRK00050         81 KEVLAE-GLG--KVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQSQGLTAAEVVNTYSEEELARIFKEYGEERFA  157 (296)
T ss_pred             HHHHHc-CCC--ccCEEEECCCccccccCCCcCCcccCCCCCCcCCcCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcchH
Confidence            999876 553  69999999999999999 9999999999999999999 899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHH
Q psy7191         224 RQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLR  303 (413)
Q Consensus       224 ~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALR  303 (413)
                      ++||++||++| +.+||+||.||+++|++++|.        ++                       +++|||||||||||
T Consensus       158 ~~iA~~Iv~~R-~~~~~~tt~~L~~~i~~~~~~--------~~-----------------------~~~hpatr~FQAlR  205 (296)
T PRK00050        158 RRIARAIVEAR-PKKPITTTGELAEIIKSAVPP--------RR-----------------------KGIHPATRTFQALR  205 (296)
T ss_pred             HHHHHHHHHHh-ccCCCCCHHHHHHHHHHHcCc--------cC-----------------------CCCCchHHHHHHHH
Confidence            99999999999 789999999999999999982        11                       34699999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCCc
Q psy7191         304 RFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPW  383 (413)
Q Consensus       304 I~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (413)
                      |+||+||++|+.+|..++++|+|||||+|||||||||||||+||+++...+         |+             ..+.|
T Consensus       206 I~VN~El~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f~~~~~~~---------~~-------------~~~~~  263 (296)
T PRK00050        206 IEVNDELEELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFFRELSKGC---------CG-------------NKPKL  263 (296)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHhcccc---------cc-------------cCCce
Confidence            999999999999999999999999999999999999999999999865431         11             14568


Q ss_pred             eeecc--cCCCccce---------eeeeEEee
Q psy7191         384 TILDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       384 ~~itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                      +++|+  |+||++||         ||||++|+
T Consensus       264 ~~~~~k~i~ps~~Ei~~NpRsRSAkLR~~~k~  295 (296)
T PRK00050        264 KLLTKKPIKPSEEEIAANPRARSAKLRVAERL  295 (296)
T ss_pred             EEcCCCCcCCCHHHHHhCcchHhhhheEEEec
Confidence            99998  99999999         99999985

>KOG2782|consensus

Probab=100.00  E-value=4.2e-76  Score=556.08  Aligned_cols=259  Identities=29%  Similarity=0.416  Sum_probs=241.0

Q ss_pred             ccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-CCC-CeEEEecC
Q psy7191          64 IYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-NDP-RLVPVYGK  141 (413)
Q Consensus        64 ~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-~~~-rv~~i~~n  141 (413)
                      .-..|+|||++|+++.|. |.++++|+|||||+||||..||+++|+.++||+|+||.|.+.|.-..+ .|. ++..+.++
T Consensus        23 ~~~~HVPVm~devl~~ls-pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~  101 (303)
T KOG2782|consen   23 VPSSHVPVMLDEVLDILS-PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGN  101 (303)
T ss_pred             ccccCCceehhhHHHHcC-CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhh
Confidence            346899999999999997 999999999999999999999999999999999999999999976653 354 88889999


Q ss_pred             CCChHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCC
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGE  219 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGE  219 (413)
                      |++++.++.+.|+..+.||||||||||||||+| |+||||..+|||||||||+ ...+|.+++|+|+|.||.+|+|.|||
T Consensus       102 Fs~~~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpLDMRMDgg~s~g~~~~~~~~~e~~l~rvlr~yge  181 (303)
T KOG2782|consen  102 FSYIKSLIADTGLLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPLDMRMDGGASLGAEDIVNSWPESELGRVLRDYGE  181 (303)
T ss_pred             hHHHHHHHHHhCCCcCCcceEEeecCccccccCCccccceeeccCCcceeecCCCccceeeeecccchhhHHHHHHHhhh
Confidence            999999999999988999999999999999999 9999999999999999999 78899999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHH
Q psy7191         220 EKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVY  299 (413)
Q Consensus       220 E~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~F  299 (413)
                      |++|+.|++.||++| -...|+||.||+++|+..-|.+        ++..|                   +.+|.|||+|
T Consensus       182 e~~~~~l~~~iv~ar-~~~~l~st~~l~dli~~~~~~~--------r~~~~-------------------~~~~tatk~f  233 (303)
T KOG2782|consen  182 ESNWYLLQNRIVKAR-LNGGLHSTGELVDLIRGTSPAS--------RGGRQ-------------------GWIKTATKVF  233 (303)
T ss_pred             hhHHHHHHhhhHHhh-hccccccchhHHHHhccCCccc--------ccccc-------------------ccccccchhh
Confidence            999999999999999 7789999999999999977654        22222                   5569999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcc
Q psy7191         300 NGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNV  351 (413)
Q Consensus       300 QALRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~  351 (413)
                      |+|||+|||||++|+..|-.+.+.|.||||+++|||||||||+||++|.++.
T Consensus       234 qg~ri~vnnel~~~~~~~~l~~~vl~~~grl~~isfhSLed~vvkr~~~~i~  285 (303)
T KOG2782|consen  234 QGLRIAVNNELKTLQNSLYLSFDVLAPGGRLAVISFHSLEDRVVKRTFLDIL  285 (303)
T ss_pred             hhHHHHhhhhhhhccCceeccccccCCCccEEEEEhhhHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999854

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.68  E-value=1.4e-08  Score=91.39  Aligned_cols=53  Identities=19%  Similarity=0.396  Sum_probs=43.3

Q ss_pred             EEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         111 KVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       111 ~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +|||||+|++|++.|+++++..   .|+++++++|++|+++++.     ++||+++|||||
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-----~~v~~~iFNLGY   56 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-----GPVDAAIFNLGY   56 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S-------EEEEEEEESB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-----CCcCEEEEECCc
Confidence            6999999999999999988754   3899999999999999875     369999999999

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.55  E-value=2.9e-07  Score=95.87  Aligned_cols=83  Identities=16%  Similarity=0.226  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +++|..++|+|+|.||.|.++++.. +.++|+|+|+++.+++.++++++..+  ++.+++++...+...+.      +.+
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~------~~f  308 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQ------DTF  308 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhh------ccC
Confidence            8889999999999999999999987 46899999999999999988776543  68888888776654432      369


Q ss_pred             cEEEEcCCCCcc
Q psy7191         160 DGIIMDVGISDS  171 (413)
Q Consensus       160 DGILfDLGvSS~  171 (413)
                      |.||+|..||+.
T Consensus       309 D~Vl~DaPCsg~  320 (431)
T PRK14903        309 DRILVDAPCTSL  320 (431)
T ss_pred             CEEEECCCCCCC
Confidence            999999999854

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.50  E-value=3.9e-07  Score=88.69  Aligned_cols=84  Identities=13%  Similarity=0.071  Sum_probs=67.6

Q ss_pred             ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCC
Q psy7191          79 GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      .|. +++++.++|+++|.||.|..|.+..+ .+.|+|+|+++.+++.++++++..  .++.+++.+...+...       
T Consensus        66 ~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~-------  137 (264)
T TIGR00446        66 ALE-PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA-------  137 (264)
T ss_pred             HhC-CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh-------
Confidence            444 78999999999999999999999885 489999999999999998877654  3788888876544221       


Q ss_pred             CCCccEEEEcCCCCc
Q psy7191         156 FNSIDGIIMDVGISD  170 (413)
Q Consensus       156 ~~~VDGILfDLGvSS  170 (413)
                      ...+|.||+|..||.
T Consensus       138 ~~~fD~Vl~D~Pcsg  152 (264)
T TIGR00446       138 VPKFDAILLDAPCSG  152 (264)
T ss_pred             ccCCCEEEEcCCCCC
Confidence            135999999999873

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.44  E-value=7.3e-07  Score=90.82  Aligned_cols=88  Identities=17%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             ccCCCCCCCEEEEEecCCchhHHHHHHhcCC--CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCC
Q psy7191          79 GLNDSSDDVTMIDMTYGDGNHTRLILENIGN--VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~--g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      .|. ++||..++|+|.+.||.|++|++..++  +.|+|+|+|+.-+...++++++.+  ++.+++.+.+.+.......  
T Consensus       151 ~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~--  227 (355)
T COG0144         151 VLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG--  227 (355)
T ss_pred             HcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc--
Confidence            444 999999999999999999999999865  566999999999999888877654  6778888777665544321  


Q ss_pred             CCCCccEEEEcCCCCcc
Q psy7191         155 NFNSIDGIIMDVGISDS  171 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~  171 (413)
                        ..||.||+|-.||+.
T Consensus       228 --~~fD~iLlDaPCSg~  242 (355)
T COG0144         228 --EKFDRILLDAPCSGT  242 (355)
T ss_pred             --CcCcEEEECCCCCCC
Confidence              259999999999864

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.41  E-value=9.7e-07  Score=91.78  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=69.8

Q ss_pred             ccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191          79 GLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      .|. ++++..++|+++|.||.|..+++.. +.++|+|+|+++.+++.++++++..+  ++.++++++.++...+.     
T Consensus       245 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-----  318 (444)
T PRK14902        245 ALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-----  318 (444)
T ss_pred             HhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-----
Confidence            444 7788999999999999999999987 67999999999999999988776543  68999999876533221     


Q ss_pred             CCCccEEEEcCCCCc
Q psy7191         156 FNSIDGIIMDVGISD  170 (413)
Q Consensus       156 ~~~VDGILfDLGvSS  170 (413)
                       +.+|.|++|..||.
T Consensus       319 -~~fD~Vl~D~Pcsg  332 (444)
T PRK14902        319 -EKFDKILVDAPCSG  332 (444)
T ss_pred             -ccCCEEEEcCCCCC
Confidence             36999999988863

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.37  E-value=1.7e-06  Score=89.79  Aligned_cols=88  Identities=22%  Similarity=0.259  Sum_probs=71.9

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      +..|. +++|+.++|+++|.||.|..+++..++++|+|+|+++.+++.++++++..+ .+++++++..++..++.     
T Consensus       237 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~-----  310 (427)
T PRK10901        237 ATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD-----  310 (427)
T ss_pred             HHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc-----
Confidence            34554 788999999999999999999999877899999999999999988876554 67888888776544332     


Q ss_pred             CCCccEEEEcCCCCc
Q psy7191         156 FNSIDGIIMDVGISD  170 (413)
Q Consensus       156 ~~~VDGILfDLGvSS  170 (413)
                      .+.+|.|++|-.||.
T Consensus       311 ~~~fD~Vl~D~Pcs~  325 (427)
T PRK10901        311 GQPFDRILLDAPCSA  325 (427)
T ss_pred             cCCCCEEEECCCCCc
Confidence            236999999998863

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.37  E-value=5.5e-06  Score=75.29  Aligned_cols=75  Identities=17%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +++.++|..+|.|--+..+++..|+.+|+++|+++.|++.|++..+...  .+++++++..+-        +...++|.|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~--------~~~~~fD~I  102 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA--------LPDGKFDLI  102 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT--------CCTTCEEEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc--------ccccceeEE
Confidence            6789999999999999999999899899999999999999988765432  488888875431        123579999


Q ss_pred             EEcCC
Q psy7191         163 IMDVG  167 (413)
Q Consensus       163 LfDLG  167 (413)
                      +.|-.
T Consensus       103 v~NPP  107 (170)
T PF05175_consen  103 VSNPP  107 (170)
T ss_dssp             EE---
T ss_pred             EEccc
Confidence            96655

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.37  E-value=1.2e-06  Score=91.02  Aligned_cols=90  Identities=18%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      ..|. +++|..++|+++|.||.|.+|++..+ .++|+|+|+++.+++.++++++..  .++++++++...+...+.   .
T Consensus       246 ~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~---~  321 (434)
T PRK14901        246 PLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP---Q  321 (434)
T ss_pred             HHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc---c
Confidence            3454 78899999999999999999999874 589999999999999998877654  378999988776542211   1


Q ss_pred             CCCCccEEEEcCCCCcc
Q psy7191         155 NFNSIDGIIMDVGISDS  171 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~  171 (413)
                      ..+.+|.||+|-.||..
T Consensus       322 ~~~~fD~Vl~DaPCSg~  338 (434)
T PRK14901        322 WRGYFDRILLDAPCSGL  338 (434)
T ss_pred             ccccCCEEEEeCCCCcc
Confidence            12469999999998763

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.37  E-value=1.3e-06  Score=92.21  Aligned_cols=83  Identities=12%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +++|..++|+|.|.||.|.+|++.++ .|.|+|.|+++..+...+++++.++  ++.+.+.+-..+...+.      ..|
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~------~~f  184 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP------ETF  184 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhch------hhc
Confidence            78999999999999999999999985 4899999999999999888777654  77777777665544432      359


Q ss_pred             cEEEEcCCCCcc
Q psy7191         160 DGIIMDVGISDS  171 (413)
Q Consensus       160 DGILfDLGvSS~  171 (413)
                      |.||+|..||..
T Consensus       185 D~ILvDaPCSG~  196 (470)
T PRK11933        185 DAILLDAPCSGE  196 (470)
T ss_pred             CeEEEcCCCCCC
Confidence            999999999864

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.35  E-value=7.8e-07  Score=82.04  Aligned_cols=134  Identities=22%  Similarity=0.260  Sum_probs=82.2

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .+++|+|+|.||.|-++....  .+|+|+|+||..++.|+.+.+-|+   ++.+++++|.++.   ....... .+|.|+
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~---~~~~~~~-~~D~vF   74 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL---KRLKSNK-IFDVVF   74 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG---GGB-------SEEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH---hhccccc-cccEEE
Confidence            378999999999999999885  479999999999999998877664   9999999987643   3222111 169998


Q ss_pred             EcCCCCccCcc-CCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCC
Q psy7191         164 MDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLER  242 (413)
Q Consensus       164 fDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~T  242 (413)
                               ++ |=-|-+|......|++-+.+..+..+++..                  +++++..|+-.-.   +-..
T Consensus        75 ---------lSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~------------------~~~~t~nv~l~LP---Rn~d  124 (163)
T PF09445_consen   75 ---------LSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKA------------------ARKITPNVVLFLP---RNSD  124 (163)
T ss_dssp             ---------E---BSSGGGGGSSSB-TTTSSSS--HHHHHHH------------------HHHH-S-EEEEEE---TTB-
T ss_pred             ---------ECCCCCCccccccCccCHHHccCCCCHHHHHHH------------------HHhhCCCEEEEeC---CCCC
Confidence                     67 667899998888888322233344444433                  7777777765542   2355


Q ss_pred             HHHHHHHHHhhcCC
Q psy7191         243 TRDLNELVASVSRP  256 (413)
Q Consensus       243 T~eL~~iI~~~~~~  256 (413)
                      ..||+++...+...
T Consensus       125 l~ql~~~~~~l~~~  138 (163)
T PF09445_consen  125 LNQLSQLTRELFGP  138 (163)
T ss_dssp             HHHHHHT----T-T
T ss_pred             HHHHHHHhccccCC
Confidence            67776665555443

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.34  E-value=1.6e-06  Score=89.72  Aligned_cols=90  Identities=19%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +..|. +.+|..++|+++|.||.|.++++..+.++|+|+|+++.+++.++++++..+   +++++.++-..+..+.    
T Consensus       231 ~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~----  305 (426)
T TIGR00563       231 ATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA----  305 (426)
T ss_pred             HHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc----
Confidence            34454 888999999999999999999998888899999999999999988876543   3444555433322211    


Q ss_pred             CCCCCccEEEEcCCCCccC
Q psy7191         154 NNFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       154 ~~~~~VDGILfDLGvSS~Q  172 (413)
                       ....+|.|+.|-.||+.-
T Consensus       306 -~~~~fD~VllDaPcSg~G  323 (426)
T TIGR00563       306 -ENEQFDRILLDAPCSATG  323 (426)
T ss_pred             -cccccCEEEEcCCCCCCc
Confidence             124699999999988653

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.29  E-value=6e-06  Score=68.16  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-PRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      |++.++|.-+|.|..+..+++..|.++|+|+|.+|.+++.|+++..  .. ++++++++++ ..  ...   . ...+|.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~--~~~---~-~~~~D~   73 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EF--DPD---F-LEPFDL   73 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HG--GTT---T-SSCEEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-cc--Ccc---c-CCCCCE
Confidence            5788999999999999999998899999999999999999998772  22 4999999998 21  111   1 236999


Q ss_pred             EEEcC
Q psy7191         162 IIMDV  166 (413)
Q Consensus       162 ILfDL  166 (413)
                      |+.+.
T Consensus        74 v~~~~   78 (112)
T PF12847_consen   74 VICSG   78 (112)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99887

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.27  E-value=3e-06  Score=79.50  Aligned_cols=91  Identities=16%  Similarity=0.227  Sum_probs=73.6

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~  146 (413)
                      |.+...+++.|. ++++..++|..+|.|..|..+++..+ +++|+|+|+++.+++.|+++++..  .++++++++..+. 
T Consensus        63 p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~-  140 (215)
T TIGR00080        63 PHMVAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG-  140 (215)
T ss_pred             HHHHHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC-
Confidence            667788889886 89999999999999999988888764 689999999999999999877654  4799999887542 


Q ss_pred             HHHHhcCCCCCCccEEEEcCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGv  168 (413)
                        +..    ...+|.|++|..+
T Consensus       141 --~~~----~~~fD~Ii~~~~~  156 (215)
T TIGR00080       141 --WEP----LAPYDRIYVTAAG  156 (215)
T ss_pred             --Ccc----cCCCCEEEEcCCc
Confidence              111    1369999988654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.26  E-value=4.9e-06  Score=69.21  Aligned_cols=87  Identities=17%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhc
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ..++.+. +.++..++|..+|.|.++..+++..|.++|+|+|.++.+++.+++..+.+  ++++++.++..+....+   
T Consensus        10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---   85 (124)
T TIGR02469        10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS---   85 (124)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh---
Confidence            3455554 66778999999999999999999988899999999999999998765543  47888887765421111   


Q ss_pred             CCCCCCccEEEEcCCC
Q psy7191         153 NNNFNSIDGIIMDVGI  168 (413)
Q Consensus       153 ~~~~~~VDGILfDLGv  168 (413)
                         ...+|.|+.+.+.
T Consensus        86 ---~~~~D~v~~~~~~   98 (124)
T TIGR02469        86 ---LPEPDRVFIGGSG   98 (124)
T ss_pred             ---cCCCCEEEECCcc
Confidence               1369999986543

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.22  E-value=3.6e-06  Score=83.25  Aligned_cols=89  Identities=16%  Similarity=0.213  Sum_probs=70.1

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +..|. ++++..++|+|.|.||.|.+|++..+ .+.|+|.|+++..+..-+++++..+  .+.++..+...+......  
T Consensus        78 ~~~L~-~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~--  154 (283)
T PF01189_consen   78 ALALD-PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPE--  154 (283)
T ss_dssp             HHHHT-TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHT--
T ss_pred             ccccc-ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccc--
Confidence            34455 89999999999999999999999986 6999999999999999877766554  677776555544333321  


Q ss_pred             CCCCCccEEEEcCCCCcc
Q psy7191         154 NNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       154 ~~~~~VDGILfDLGvSS~  171 (413)
                         ..+|.||+|-.||..
T Consensus       155 ---~~fd~VlvDaPCSg~  169 (283)
T PF01189_consen  155 ---SKFDRVLVDAPCSGL  169 (283)
T ss_dssp             ---TTEEEEEEECSCCCG
T ss_pred             ---cccchhhcCCCccch
Confidence               249999999999864

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.22  E-value=1.9e-05  Score=73.90  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=70.1

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~  150 (413)
                      ++++..+. ++++..++|+.+|.|.-+..+.+.. |.++|+|+|.++.+++.|+++++..  +++.++++++..++    
T Consensus        35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~----  109 (231)
T TIGR02752        35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP----  109 (231)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC----
Confidence            56677776 7889999999999999999999887 5789999999999999998876532  48899999876542    


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                         .+.+.+|.|++++++
T Consensus       110 ---~~~~~fD~V~~~~~l  124 (231)
T TIGR02752       110 ---FDDNSFDYVTIGFGL  124 (231)
T ss_pred             ---CCCCCccEEEEeccc
Confidence               123479999987665

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.19  E-value=6.7e-06  Score=85.75  Aligned_cols=84  Identities=18%  Similarity=0.277  Sum_probs=67.4

Q ss_pred             ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCC
Q psy7191          79 GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      .|. +.+|+.++|+++|.||.|..+++..+ .++|+|+|+++.+++.++++++..  .++.+++++...+.   .     
T Consensus       245 ~l~-~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~---~-----  315 (445)
T PRK14904        245 LLN-PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS---P-----  315 (445)
T ss_pred             hcC-CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc---c-----
Confidence            443 77889999999999999999998874 589999999999999998877654  36888888765542   1     


Q ss_pred             CCCccEEEEcCCCCcc
Q psy7191         156 FNSIDGIIMDVGISDS  171 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~  171 (413)
                      ...+|.|++|-.||..
T Consensus       316 ~~~fD~Vl~D~Pcsg~  331 (445)
T PRK14904        316 EEQPDAILLDAPCTGT  331 (445)
T ss_pred             CCCCCEEEEcCCCCCc
Confidence            2369999999888653

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.08  E-value=2.5e-05  Score=73.70  Aligned_cols=92  Identities=17%  Similarity=0.156  Sum_probs=73.7

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCCh
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDL  145 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l  145 (413)
                      -|-+...+++.+. ++++..++|+.+|.|..|..+.+.. ++++|+|+|+++.+++.|+++++..  .++++++++....
T Consensus        61 ~p~~~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~  139 (212)
T PRK13942         61 AIHMVAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG  139 (212)
T ss_pred             cHHHHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence            4677888888886 8999999999999999887777776 4589999999999999999877643  4899999987543


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .   .    ....+|.|+++..+
T Consensus       140 ~---~----~~~~fD~I~~~~~~  155 (212)
T PRK13942        140 Y---E----ENAPYDRIYVTAAG  155 (212)
T ss_pred             C---C----cCCCcCEEEECCCc
Confidence            1   1    12369999987554

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.06  E-value=5.9e-05  Score=70.96  Aligned_cols=88  Identities=15%  Similarity=0.173  Sum_probs=67.3

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L  149 (413)
                      +++.+++.+.  ..+..++|.++|.|..+..+++..|+..++|+|.++.+++.|+++....  +++.++++++...   +
T Consensus        76 l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~  150 (251)
T TIGR03534        76 LVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---L  150 (251)
T ss_pred             HHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---C
Confidence            3444555553  3456899999999999999999888899999999999999998866543  3789999887531   1


Q ss_pred             HhcCCCCCCccEEEEcCCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGvS  169 (413)
                           ..+++|.|+.|..|.
T Consensus       151 -----~~~~fD~Vi~npPy~  165 (251)
T TIGR03534       151 -----PGGKFDLIVSNPPYI  165 (251)
T ss_pred             -----cCCceeEEEECCCCC
Confidence                 124699999877663

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.05  E-value=3.4e-05  Score=69.75  Aligned_cols=87  Identities=15%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ++.+++.+. +.++..++|.-+|.|..|..++++  .++|+|+|.|+.+++.++++....++++++++++.++.  +.  
T Consensus         2 ~~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~--~~--   74 (169)
T smart00650        2 IDKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD--LP--   74 (169)
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC--cc--
Confidence            456677776 778889999999999999999987  47899999999999999887755558999999987653  11  


Q ss_pred             CCCCCCccEEEEcCCCC
Q psy7191         153 NNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       153 ~~~~~~VDGILfDLGvS  169 (413)
                         ...+|.|+.|+.|.
T Consensus        75 ---~~~~d~vi~n~Py~   88 (169)
T smart00650       75 ---KLQPYKVVGNLPYN   88 (169)
T ss_pred             ---ccCCCEEEECCCcc
Confidence               12489999998885

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.05  E-value=1.7e-05  Score=74.23  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=71.9

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCCh
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDL  145 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l  145 (413)
                      |-+...+++.|. ++++..++|..+|.|..|..+.+..+ .++|+|+|+++.+++.|+++++..  . +++++++++.+.
T Consensus        58 p~~~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~  136 (205)
T PRK13944         58 PHMVAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG  136 (205)
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence            446777788886 88899999999999999888887774 689999999999999998876543  2 689999887653


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                         +..    ...+|.|+++.++
T Consensus       137 ---~~~----~~~fD~Ii~~~~~  152 (205)
T PRK13944        137 ---LEK----HAPFDAIIVTAAA  152 (205)
T ss_pred             ---Ccc----CCCccEEEEccCc
Confidence               111    1369999988765

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.04  E-value=1.6e-05  Score=70.15  Aligned_cols=79  Identities=24%  Similarity=0.307  Sum_probs=63.1

Q ss_pred             CCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +.+..++|.-+|.|..+..+++. .|+++++|+|.++++++.|+++.+.  ++++++++++..+++..+     + +.+|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~-----~-~~~D   75 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQEL-----E-EKFD   75 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCS-----S-TTEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcccccc-----C-CCee
Confidence            45789999999999999999955 5789999999999999999987543  448999999998865321     1 3699


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|+.+..+
T Consensus        76 ~I~~~~~l   83 (152)
T PF13847_consen   76 IIISNGVL   83 (152)
T ss_dssp             EEEEESTG
T ss_pred             EEEEcCch
Confidence            99988544

...

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.02  E-value=1.9e-05  Score=78.76  Aligned_cols=95  Identities=18%  Similarity=0.220  Sum_probs=78.9

Q ss_pred             hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---CCCeE
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---DPRLV  136 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---~~rv~  136 (413)
                      -.++||+   |.+++.+++.+. +.+++.++|..+|.|..|..+++..  .+|+|+|+|+.+++.+++.++.   .++++
T Consensus        12 k~~GQnFL~d~~i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~   88 (294)
T PTZ00338         12 KKFGQHILKNPLVLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLE   88 (294)
T ss_pred             CCCCccccCCHHHHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEE
Confidence            4567777   789999999986 8889999999999999999999874  5799999999999999887653   34899


Q ss_pred             EEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         137 PVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       137 ~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      ++++++-..+  +       ..+|.|+.||.|.
T Consensus        89 ii~~Dal~~~--~-------~~~d~VvaNlPY~  112 (294)
T PTZ00338         89 VIEGDALKTE--F-------PYFDVCVANVPYQ  112 (294)
T ss_pred             EEECCHhhhc--c-------cccCEEEecCCcc
Confidence            9999986542  1       2479999999984

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.01  E-value=2e-05  Score=73.76  Aligned_cols=89  Identities=15%  Similarity=0.173  Sum_probs=68.3

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCC-CChHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKF-SDLPN  147 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nF-s~l~~  147 (413)
                      -|..+..+.+.  +++..++|..+|.|.++..+++..|+++|+|+|.++.+++.++++.+.  .+++.+++++. ..+..
T Consensus        28 ~~~~~~~~~~~--~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~  105 (202)
T PRK00121         28 PAPLDWAELFG--NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLD  105 (202)
T ss_pred             CCCCCHHHHcC--CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHH
Confidence            34455555554  367899999999999999999988888999999999999999876543  24899999987 55543


Q ss_pred             HHHhcCCCCCCccEEEEcC
Q psy7191         148 ILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDL  166 (413)
                      .+.     .+.+|.|++++
T Consensus       106 ~~~-----~~~~D~V~~~~  119 (202)
T PRK00121        106 MFP-----DGSLDRIYLNF  119 (202)
T ss_pred             HcC-----ccccceEEEEC
Confidence            332     24689998754

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.00  E-value=3.1e-05  Score=75.43  Aligned_cols=87  Identities=23%  Similarity=0.357  Sum_probs=73.6

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHh
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~  151 (413)
                      ++.++.+. +.+|..++|+++|+|--+..+.+..+.++|+|+|+.+.+|+.|+++.....  .+.+++++..+|+  +  
T Consensus        41 ~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f--  115 (238)
T COG2226          41 RALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--F--  115 (238)
T ss_pred             HHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--C--
Confidence            56667775 668999999999999999999999899999999999999999998876532  5999999998875  2  


Q ss_pred             cCCCCCCccEEEEcCCC
Q psy7191         152 MNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       152 ~~~~~~~VDGILfDLGv  168 (413)
                         +.+.+|.+.+..|.
T Consensus       116 ---~D~sFD~vt~~fgl  129 (238)
T COG2226         116 ---PDNSFDAVTISFGL  129 (238)
T ss_pred             ---CCCccCEEEeeehh
Confidence               33579999988887

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.00  E-value=2.9e-05  Score=71.68  Aligned_cols=74  Identities=18%  Similarity=0.126  Sum_probs=59.1

Q ss_pred             cccchHhHHh----ccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCC
Q psy7191          69 YPRTFQTSAS----GLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKF  142 (413)
Q Consensus        69 ~pvll~evi~----~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nF  142 (413)
                      +|+.-.++-.    .|. +.+++.++|+.+|.|.++..++...|.++|+|+|.|+.+++.++++++.+  .++++++++.
T Consensus        21 ~p~t~~~v~~~l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~   99 (196)
T PRK07402         21 IPLTKREVRLLLISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA   99 (196)
T ss_pred             CCCCHHHHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch
Confidence            5666555443    343 67889999999999999999987778899999999999999998876544  3788888775


Q ss_pred             C
Q psy7191         143 S  143 (413)
Q Consensus       143 s  143 (413)
                      .
T Consensus       100 ~  100 (196)
T PRK07402        100 P  100 (196)
T ss_pred             H
Confidence            3

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=97.97  E-value=4.9e-05  Score=69.54  Aligned_cols=87  Identities=18%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             ccccchHhHH----hccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecC
Q psy7191          68 KYPRTFQTSA----SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGK  141 (413)
Q Consensus        68 H~pvll~evi----~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~n  141 (413)
                      ++|+..+++-    +.|. +.+++.++|+.+|.|.++..++...|+++|+|+|+++.+++.++++.+.+  .++++++++
T Consensus        11 ~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d   89 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE   89 (187)
T ss_pred             CCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            6776666644    4454 66888999999999999999999888899999999999999998765543  378888876


Q ss_pred             CCChHHHHHhcCCCCCCccEEEE
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      ..   ..+      ...+|.|++
T Consensus        90 ~~---~~~------~~~~D~v~~  103 (187)
T PRK08287         90 AP---IEL------PGKADAIFI  103 (187)
T ss_pred             ch---hhc------CcCCCEEEE
Confidence            42   111      135888885

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.94  E-value=4.8e-05  Score=73.82  Aligned_cols=95  Identities=12%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY  139 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~  139 (413)
                      ..|+||+   |-+++.+++.+. ..++..++|..+|.|..|..+++.  ..+|+|+|+|+.+++.++++.+..+++++++
T Consensus         5 k~~GQnfl~d~~~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~   81 (258)
T PRK14896          5 KKLGQHFLIDDRVVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIAAGNVEIIE   81 (258)
T ss_pred             CcCCccccCCHHHHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhccCCCEEEEE
Confidence            4566665   567778888876 778899999999999999999988  3589999999999999988765556899999


Q ss_pred             cCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         140 GKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       140 ~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +++..++  +       ..+|.|+.++.|.
T Consensus        82 ~D~~~~~--~-------~~~d~Vv~NlPy~  102 (258)
T PRK14896         82 GDALKVD--L-------PEFNKVVSNLPYQ  102 (258)
T ss_pred             eccccCC--c-------hhceEEEEcCCcc
Confidence            9987653  1       1378999999883

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=97.93  E-value=3.3e-05  Score=74.53  Aligned_cols=108  Identities=20%  Similarity=0.283  Sum_probs=57.7

Q ss_pred             HHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhh
Q psy7191          50 LKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTL  128 (413)
Q Consensus        50 ~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~l  128 (413)
                      ....|-.++++-+  ++.|.-. -+.+++.+. +.++..++|+++|+|-=|..+++.. |+++|+|+|..+.+++.|+++
T Consensus        16 ia~~YD~~n~~ls--~g~~~~w-r~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k   91 (233)
T PF01209_consen   16 IAPRYDRMNDLLS--FGQDRRW-RRKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKK   91 (233)
T ss_dssp             ------------------------SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHH
T ss_pred             HHHHhCCCccccC--CcHHHHH-HHHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHH
Confidence            3445555555543  2333221 125566665 7889999999999997777788876 679999999999999999987


Q ss_pred             hcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         129 AAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       129 l~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ++..  .++++++++..+++  +     +.+.+|.|..=+|+
T Consensus        92 ~~~~~~~~i~~v~~da~~lp--~-----~d~sfD~v~~~fgl  126 (233)
T PF01209_consen   92 LKREGLQNIEFVQGDAEDLP--F-----PDNSFDAVTCSFGL  126 (233)
T ss_dssp             HHHTT--SEEEEE-BTTB----S------TT-EEEEEEES-G
T ss_pred             HHhhCCCCeeEEEcCHHHhc--C-----CCCceeEEEHHhhH
Confidence            6543  38999999998875  2     23579999955544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.93  E-value=1.9e-05  Score=65.72  Aligned_cols=80  Identities=23%  Similarity=0.252  Sum_probs=61.6

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      |..++|.++|.|--+.++++.. ..+++|+|+||.+++.|+.++...   .++.++++++..+...+     ..+++|.|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEEE
Confidence            4679999999998888888886 689999999999999998866542   38999999986554222     23579999


Q ss_pred             EEcCCCCcc
Q psy7191         163 IMDVGISDS  171 (413)
Q Consensus       163 LfDLGvSS~  171 (413)
                      ++|..|...
T Consensus        75 v~npP~~~~   83 (117)
T PF13659_consen   75 VTNPPYGPR   83 (117)
T ss_dssp             EE--STTSB
T ss_pred             EECCCCccc
Confidence            999999643

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=97.93  E-value=0.0001  Score=71.67  Aligned_cols=86  Identities=23%  Similarity=0.285  Sum_probs=66.6

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhc-----CCCCeEEEecCCCChHHHHH
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAA-----NDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~-----~~~rv~~i~~nFs~l~~~L~  150 (413)
                      ++.+. +.++..++|..+|+|..+..+.+.. |+++|+|+|.++++++.|+++..     ..+++.+++++..+++    
T Consensus        66 ~~~~~-~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp----  140 (261)
T PLN02233         66 VSWSG-AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP----  140 (261)
T ss_pred             HHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC----
Confidence            34444 6778899999999999888888876 57899999999999999976542     1237899999887653    


Q ss_pred             hcCCCCCCccEEEEcCCCCc
Q psy7191         151 NMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGvSS  170 (413)
                         ++.+.+|.|++.+++..
T Consensus       141 ---~~~~sfD~V~~~~~l~~  157 (261)
T PLN02233        141 ---FDDCYFDAITMGYGLRN  157 (261)
T ss_pred             ---CCCCCEeEEEEeccccc
Confidence               22357999998777643

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.93  E-value=5.9e-05  Score=69.93  Aligned_cols=92  Identities=22%  Similarity=0.281  Sum_probs=68.1

Q ss_pred             CccccchHhH----HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEE
Q psy7191          67 KKYPRTFQTS----ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND---PRLVPV  138 (413)
Q Consensus        67 ~H~pvll~ev----i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i  138 (413)
                      +|.|+.-.|+    +..+. +.+++.++|..+|.|..+..++... +.++|+|+|+++.+++.++++...+   .++.++
T Consensus        19 ~~~~~t~~~~r~~~l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~   97 (198)
T PRK00377         19 EEIPMTKEEIRALALSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI   97 (198)
T ss_pred             CCCCCCHHHHHHHHHHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE
Confidence            3667665554    23343 6789999999999999999998776 5689999999999999998765443   378888


Q ss_pred             ecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191         139 YGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       139 ~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      ++++.+   ++....   ..+|.|+.+
T Consensus        98 ~~d~~~---~l~~~~---~~~D~V~~~  118 (198)
T PRK00377         98 KGEAPE---ILFTIN---EKFDRIFIG  118 (198)
T ss_pred             Eechhh---hHhhcC---CCCCEEEEC
Confidence            887754   333321   368999864

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.92  E-value=4.5e-05  Score=79.53  Aligned_cols=94  Identities=13%  Similarity=0.189  Sum_probs=71.5

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~  147 (413)
                      ..|.+++++.+. +.++..++|+.+|.|..|..+++..  .+|+|+|+++.|++.|+++++..  .++++++++..+.  
T Consensus       283 e~l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~--  357 (443)
T PRK13168        283 QKMVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED--  357 (443)
T ss_pred             HHHHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh--
Confidence            467788888886 7788999999999999999988774  68999999999999998876532  3789999887542  


Q ss_pred             HHHhcCCCCCCccEEEEcCCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGvS  169 (413)
                       +.........+|.|++|-.++
T Consensus       358 -l~~~~~~~~~fD~Vi~dPPr~  378 (443)
T PRK13168        358 -FTDQPWALGGFDKVLLDPPRA  378 (443)
T ss_pred             -hhhhhhhcCCCCEEEECcCCc
Confidence             221111123589999776653

>PRK08317 hypothetical protein; Provisional

Probab=97.91  E-value=7.5e-05  Score=68.62  Aligned_cols=93  Identities=24%  Similarity=0.290  Sum_probs=71.4

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC-CCCeEEEecCCCCh
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDL  145 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~-~~rv~~i~~nFs~l  145 (413)
                      |+.-+-+..++.+. +.++..++|+.+|.|+.+..+++.+ |.++++|+|.++.+++.++++... ..++.++.+++..+
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~   81 (241)
T PRK08317          3 DFRRYRARTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL   81 (241)
T ss_pred             hHHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC
Confidence            44444556667776 7888999999999999999999887 778999999999999999876332 23788888887654


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +       +..+.+|.|+.+..+
T Consensus        82 ~-------~~~~~~D~v~~~~~~   97 (241)
T PRK08317         82 P-------FPDGSFDAVRSDRVL   97 (241)
T ss_pred             C-------CCCCCceEEEEechh
Confidence            3       122469999987654

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.90  E-value=6.4e-05  Score=73.55  Aligned_cols=97  Identities=12%  Similarity=0.179  Sum_probs=77.5

Q ss_pred             hhhccCCccc---cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEE
Q psy7191          61 SEDIYNKKYP---RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVP  137 (413)
Q Consensus        61 ~~n~y~~H~p---vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~  137 (413)
                      ....|++|+.   .+.+.+++.+. +.++..++|..+|.|..|..++++.+  +|+|+|.|+.+++.++++... +++++
T Consensus        16 ~~k~~gq~fl~~~~i~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~-~~v~~   91 (272)
T PRK00274         16 AKKSLGQNFLIDENILDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAE-DNLTI   91 (272)
T ss_pred             CCcccCcCcCCCHHHHHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhcc-CceEE
Confidence            3566778654   46777888886 78889999999999999999999864  899999999999999876543 58999


Q ss_pred             EecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       138 i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++++.+++  +...     ..+.|+.++.|
T Consensus        92 i~~D~~~~~--~~~~-----~~~~vv~NlPY  115 (272)
T PRK00274         92 IEGDALKVD--LSEL-----QPLKVVANLPY  115 (272)
T ss_pred             EEChhhcCC--HHHc-----CcceEEEeCCc
Confidence            999988763  2211     14889999988

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=97.88  E-value=7.3e-05  Score=73.83  Aligned_cols=89  Identities=12%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             cchHhHHhc-cCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChH
Q psy7191          71 RTFQTSASG-LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLP  146 (413)
Q Consensus        71 vll~evi~~-L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~  146 (413)
                      .++.+.+.. +. +.++..++|..+|.|..+..++...|+++|+|+|+++.|++.|+++.+..   .++.++++++.+  
T Consensus       107 ~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~--  183 (284)
T TIGR03533       107 ELIEDGFAPWLE-PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA--  183 (284)
T ss_pred             HHHHHHHHHHhc-cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh--
Confidence            344555542 32 34557899999999999999999989899999999999999998876533   279999988532  


Q ss_pred             HHHHhcCCCCCCccEEEEcCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGv  168 (413)
                       .+     +...+|.|+.|-.|
T Consensus       184 -~~-----~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       184 -AL-----PGRKYDLIVSNPPY  199 (284)
T ss_pred             -cc-----CCCCccEEEECCCC
Confidence             11     12369999988666

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.88  E-value=6.5e-05  Score=72.43  Aligned_cols=81  Identities=17%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY  139 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~  139 (413)
                      -.|++|+   |.+++++++.+. ..+++.++|.-+|.|..|..|++..+  .|+|+|.|+.+++.+++.....+++++++
T Consensus         5 k~~gq~fl~d~~i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~   81 (253)
T TIGR00755         5 KSLGQNFLIDESVIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIE   81 (253)
T ss_pred             CCCCCccCCCHHHHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEE
Confidence            4578888   568889999886 77889999999999999999999875  59999999999999987764445899999


Q ss_pred             cCCCChH
Q psy7191         140 GKFSDLP  146 (413)
Q Consensus       140 ~nFs~l~  146 (413)
                      +++.+++
T Consensus        82 ~D~~~~~   88 (253)
T TIGR00755        82 GDALKVD   88 (253)
T ss_pred             CchhcCC
Confidence            9987654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=97.86  E-value=5e-05  Score=62.58  Aligned_cols=69  Identities=28%  Similarity=0.371  Sum_probs=54.0

Q ss_pred             EEEEecCCchhHHHHHHhc---CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          89 MIDMTYGDGNHTRLILENI---GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        89 ~VDaTlG~GGHS~aILe~~---p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      ++|..+|.|-++..++..+   |+.+++|+|+++++++.++++.... .+++++++++.+++..       .+.+|.|+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~-------~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFS-------DGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHH-------SSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCccc-------CCCeeEEEE
Confidence            5899999999999999987   4579999999999999998876432 3899999999987531       136999997

>PLN02244 tocopherol O-methyltransferase

Probab=97.86  E-value=0.00015  Score=73.28  Aligned_cols=86  Identities=15%  Similarity=0.118  Sum_probs=68.4

Q ss_pred             cchHhHHhccCCC-----CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCC
Q psy7191          71 RTFQTSASGLNDS-----SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKF  142 (413)
Q Consensus        71 vll~evi~~L~~~-----~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nF  142 (413)
                      .|++++++.+. +     +++..++|..||.|+.+..+.+++ +++|+|+|.++.+++.++++.+.  . +++.++.++.
T Consensus       100 ~~~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~  177 (340)
T PLN02244        100 RMIEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA  177 (340)
T ss_pred             HHHHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc
Confidence            47888888875 5     678899999999999999988876 67999999999999999876543  2 3799999887


Q ss_pred             CChHHHHHhcCCCCCCccEEEEc
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      .+++       ++.+.+|.|+..
T Consensus       178 ~~~~-------~~~~~FD~V~s~  193 (340)
T PLN02244        178 LNQP-------FEDGQFDLVWSM  193 (340)
T ss_pred             ccCC-------CCCCCccEEEEC
Confidence            6642       223579999864

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.85  E-value=7.8e-05  Score=68.32  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      ....+++.+. ..++..++|+.+|.|+.+..+++..|. ++++|+|+++.+++.++++.....++.++.+++.++.    
T Consensus        27 ~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~----  101 (223)
T TIGR01934        27 WRRRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP----  101 (223)
T ss_pred             HHHHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC----
Confidence            3455666665 557889999999999999999999876 8999999999999998876642237888888887653    


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                         ...+.+|.|+...++
T Consensus       102 ---~~~~~~D~i~~~~~~  116 (223)
T TIGR01934       102 ---FEDNSFDAVTIAFGL  116 (223)
T ss_pred             ---CCCCcEEEEEEeeee
Confidence               112469999876654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK04266 fibrillarin; Provisional

Probab=97.84  E-value=0.00014  Score=70.03  Aligned_cols=93  Identities=8%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             ccccchHhHHh---ccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC
Q psy7191          68 KYPRTFQTSAS---GLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD  144 (413)
Q Consensus        68 H~pvll~evi~---~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~  144 (413)
                      +.+=+...++.   .+. ++++..++|+.+|.|+-|..+.+..+.++|||+|+++.+++...++.+..+++.++.++..+
T Consensus        53 ~r~~~~~~ll~~~~~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~  131 (226)
T PRK04266         53 RRSKLAAAILKGLKNFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARK  131 (226)
T ss_pred             CccchHHHHHhhHhhCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCC
Confidence            33444444444   354 78999999999999999999988887789999999999988765554433578888888654


Q ss_pred             hHHHHHhcCCCCCCccEEEEc
Q psy7191         145 LPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfD  165 (413)
                      .....   ++. ..||.|+.|
T Consensus       132 ~~~~~---~l~-~~~D~i~~d  148 (226)
T PRK04266        132 PERYA---HVV-EKVDVIYQD  148 (226)
T ss_pred             cchhh---hcc-ccCCEEEEC
Confidence            31111   122 358988844

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.82  E-value=0.00013  Score=69.94  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=66.4

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-CC-CCeEEEecCCCChHHHHHhc
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-ND-PRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-~~-~rv~~i~~nFs~l~~~L~~~  152 (413)
                      .++..+. ..++..++|..+|.|..+..++...|..+|+|+|+++.+++.|+++.+ .. .++.++++++...       
T Consensus        99 ~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-------  170 (275)
T PRK09328         99 WALEALL-LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-------  170 (275)
T ss_pred             HHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-------
Confidence            3333343 456789999999999999999999998999999999999999988765 22 3789999886321       


Q ss_pred             CCCCCCccEEEEcCCCC
Q psy7191         153 NNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       153 ~~~~~~VDGILfDLGvS  169 (413)
                       +..+.+|.|+.|..|.
T Consensus       171 -~~~~~fD~Iv~npPy~  186 (275)
T PRK09328        171 -LPGGRFDLIVSNPPYI  186 (275)
T ss_pred             -CCCCceeEEEECCCcC
Confidence             1124699999887763

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.82  E-value=5.9e-05  Score=72.50  Aligned_cols=106  Identities=19%  Similarity=0.268  Sum_probs=75.4

Q ss_pred             HHHHhH-HhhhhhccCCccccc--------hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHH
Q psy7191          52 KNLASL-KRLSEDIYNKKYPRT--------FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESF  122 (413)
Q Consensus        52 ~~~~sl-~~~~~n~y~~H~pvl--------l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al  122 (413)
                      |+|.-+ ++-.+|+|+.....+        +++.++.+.  .++..++|..+|.|..+..+++.  ..+|+|+|.+++++
T Consensus         4 ~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l   79 (255)
T PRK11036          4 RNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMI   79 (255)
T ss_pred             CChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHH
Confidence            334443 455667788764332        235555553  45679999999999999999876  46899999999999


Q ss_pred             HHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         123 EKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       123 ~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      +.|+++....   +++++++++..++....      .+.+|.|++...
T Consensus        80 ~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~fD~V~~~~v  121 (255)
T PRK11036         80 QRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPVDLILFHAV  121 (255)
T ss_pred             HHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCCCEEEehhH
Confidence            9998876542   37899998887654322      246999996543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=97.81  E-value=0.00023  Score=65.87  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC---CCCeEEEecCCC
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN---DPRLVPVYGKFS  143 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~---~~rv~~i~~nFs  143 (413)
                      +.......++..+. ..++..++|..+|.|+.+..++...| +.+++|+|.++.+++.++++...   ..++.++.+++.
T Consensus        35 ~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  113 (239)
T PRK00216         35 LHRVWRRKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAE  113 (239)
T ss_pred             CcHHHHHHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccc
Confidence            34455667787776 66788999999999999999999887 68999999999999999887654   237888988887


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ++.       ...+.+|.|+...+
T Consensus       114 ~~~-------~~~~~~D~I~~~~~  130 (239)
T PRK00216        114 ALP-------FPDNSFDAVTIAFG  130 (239)
T ss_pred             cCC-------CCCCCccEEEEecc
Confidence            653       11246899986544

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.76  E-value=5.5e-05  Score=72.11  Aligned_cols=92  Identities=20%  Similarity=0.262  Sum_probs=69.8

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCCh
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDL  145 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l  145 (413)
                      |-|...++++|. ++||..++|...|.| +..++|..+  +.++|+++|+|+...+.|+++++..  .++.+++++-..-
T Consensus        58 P~~~a~~l~~L~-l~pg~~VLeIGtGsG-Y~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g  135 (209)
T PF01135_consen   58 PSMVARMLEALD-LKPGDRVLEIGTGSG-YQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG  135 (209)
T ss_dssp             HHHHHHHHHHTT-C-TT-EEEEES-TTS-HHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT
T ss_pred             HHHHHHHHHHHh-cCCCCEEEEecCCCc-HHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc
Confidence            678889999997 999999999999999 566666665  5689999999999999999888753  3899999875421


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                         +..    ..++|.|++.-++..
T Consensus       136 ---~~~----~apfD~I~v~~a~~~  153 (209)
T PF01135_consen  136 ---WPE----EAPFDRIIVTAAVPE  153 (209)
T ss_dssp             ---TGG----G-SEEEEEESSBBSS
T ss_pred             ---ccc----CCCcCEEEEeeccch
Confidence               122    136999999998864

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.76  E-value=7.5e-05  Score=75.52  Aligned_cols=93  Identities=16%  Similarity=0.218  Sum_probs=73.3

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCCh
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDL  145 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l  145 (413)
                      -|.|+...++.+. +++++.++|..+|.|.-+..+++..+ .+.|+|+|+++++++.|++.++..  .++++++++....
T Consensus        65 ~p~l~a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~  143 (322)
T PRK13943         65 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYG  143 (322)
T ss_pred             cHHHHHHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhc
Confidence            5788888888886 88899999999999988888887775 478999999999999998866543  3788888875432


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                         +..    ...+|.|+++.|+.
T Consensus       144 ---~~~----~~~fD~Ii~~~g~~  160 (322)
T PRK13943        144 ---VPE----FAPYDVIFVTVGVD  160 (322)
T ss_pred             ---ccc----cCCccEEEECCchH
Confidence               211    13599999998864

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.73  E-value=0.00011  Score=69.47  Aligned_cols=82  Identities=27%  Similarity=0.272  Sum_probs=66.3

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcC
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~  153 (413)
                      ++..|. +.|+++++|.-+|+|.=|...+-..|.++|||||+|++|++.++++.+.|.  ++.++.++-   ++.|..+ 
T Consensus        26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A---p~~L~~~-  100 (187)
T COG2242          26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA---PEALPDL-  100 (187)
T ss_pred             HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc---hHhhcCC-
Confidence            356676 999999999999999999999955699999999999999999998877664  899998764   3445432 


Q ss_pred             CCCCCccEEEEc
Q psy7191         154 NNFNSIDGIIMD  165 (413)
Q Consensus       154 ~~~~~VDGILfD  165 (413)
                       +  .+|+|++-
T Consensus       101 -~--~~daiFIG  109 (187)
T COG2242         101 -P--SPDAIFIG  109 (187)
T ss_pred             -C--CCCEEEEC
Confidence             1  58888843

>PRK14967 putative methyltransferase; Provisional

Probab=97.71  E-value=0.00017  Score=68.04  Aligned_cols=89  Identities=12%  Similarity=0.168  Sum_probs=66.5

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL  149 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L  149 (413)
                      .++-+.+..+. ..+++.++|..+|.|.-+..+... +..+|+|+|+++.+++.++++.+... +++++++++..   .+
T Consensus        23 ~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~   97 (223)
T PRK14967         23 QLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AV   97 (223)
T ss_pred             HHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hc
Confidence            45556666654 677889999999999888877654 44599999999999999988765433 67888877653   22


Q ss_pred             HhcCCCCCCccEEEEcCCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGvS  169 (413)
                      .     .+.+|.|+.|.+|.
T Consensus        98 ~-----~~~fD~Vi~npPy~  112 (223)
T PRK14967         98 E-----FRPFDVVVSNPPYV  112 (223)
T ss_pred             c-----CCCeeEEEECCCCC
Confidence            1     24699999888763

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.69  E-value=0.00012  Score=75.88  Aligned_cols=95  Identities=18%  Similarity=0.190  Sum_probs=72.9

Q ss_pred             CccccchH--hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCC
Q psy7191          67 KKYPRTFQ--TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKF  142 (413)
Q Consensus        67 ~H~pvll~--evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nF  142 (413)
                      ...+.+++  .+++.+. ...+.++||..||.|.++.++....|+..++|+|+++.+++.|.++...  .+++.+++++-
T Consensus       103 ~~~~~~~d~~~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA  181 (390)
T PRK14121        103 LKKPYILDIDNFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA  181 (390)
T ss_pred             ccccccCCHHHHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH
Confidence            33444555  5677776 5667799999999999999999999999999999999999998766543  34899998886


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ..+...+     +.+.+|.|.+.+.
T Consensus       182 ~~ll~~~-----~~~s~D~I~lnFP  201 (390)
T PRK14121        182 RLLLELL-----PSNSVEKIFVHFP  201 (390)
T ss_pred             HHhhhhC-----CCCceeEEEEeCC
Confidence            5543333     2357999997643

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.69  E-value=0.00015  Score=70.49  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      .|+++++..+....+...++|..+|.|.-+..++...|..+|+|+|+|+.|++.|+++++.. .++++++++.+   .+.
T Consensus        72 ~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~---~l~  147 (251)
T TIGR03704        72 FLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYD---ALP  147 (251)
T ss_pred             HHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechh---hcc
Confidence            46666666654122345899999999999999998888889999999999999998876543 35677777543   121


Q ss_pred             hcCCCCCCccEEEEcCCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGvS  169 (413)
                      .. . .+.+|.|++|-.|.
T Consensus       148 ~~-~-~~~fDlVv~NPPy~  164 (251)
T TIGR03704       148 TA-L-RGRVDILAANAPYV  164 (251)
T ss_pred             hh-c-CCCEeEEEECCCCC
Confidence            11 1 13599999988884

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=97.68  E-value=0.0002  Score=71.66  Aligned_cols=74  Identities=14%  Similarity=0.125  Sum_probs=60.5

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      ..++|..+|.|..+..++...|+.+|+|+|+++.|++.|+++.+..   +++.++++++.+   .+.     ...+|.|+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~---~l~-----~~~fDlIv  206 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFA---ALP-----GRRYDLIV  206 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhh---hCC-----CCCccEEE
Confidence            6899999999999999999989999999999999999998876532   279999988632   121     23699999


Q ss_pred             EcCCC
Q psy7191         164 MDVGI  168 (413)
Q Consensus       164 fDLGv  168 (413)
                      .|-.|
T Consensus       207 sNPPy  211 (307)
T PRK11805        207 SNPPY  211 (307)
T ss_pred             ECCCC
Confidence            88655

>PRK14968 putative methyltransferase; Provisional

Probab=97.66  E-value=0.0003  Score=63.07  Aligned_cols=81  Identities=16%  Similarity=0.157  Sum_probs=59.4

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-C-eEEEecCCCChHHHHHhc
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-R-LVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-r-v~~i~~nFs~l~~~L~~~  152 (413)
                      ++.+. ..+++.++|..+|.|+.+..+++.  ..+|+|+|+++++++.+++.+...  . + +.+++.++.+.   +   
T Consensus        16 ~~~~~-~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~---   86 (188)
T PRK14968         16 AENAV-DKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---F---   86 (188)
T ss_pred             HHhhh-ccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---c---
Confidence            44443 567889999999999999998887  579999999999999988765432  2 2 77777765331   1   


Q ss_pred             CCCCCCccEEEEcCCC
Q psy7191         153 NNNFNSIDGIIMDVGI  168 (413)
Q Consensus       153 ~~~~~~VDGILfDLGv  168 (413)
                        ....+|.|+.|.++
T Consensus        87 --~~~~~d~vi~n~p~  100 (188)
T PRK14968         87 --RGDKFDVILFNPPY  100 (188)
T ss_pred             --cccCceEEEECCCc
Confidence              12258999977654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.64  E-value=0.00018  Score=72.13  Aligned_cols=87  Identities=18%  Similarity=0.095  Sum_probs=65.2

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L  149 (413)
                      |....+.... .+++..++|..+|.|+.+.....  ...+|+|+|+|+.+++.|+++++.++  .+.++++++.+++.  
T Consensus       170 la~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~--  244 (329)
T TIGR01177       170 LARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPL--  244 (329)
T ss_pred             HHHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCc--
Confidence            4444444444 77899999999999987765432  45789999999999999988776543  57888998877532  


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                           ..+.+|.|+.|..|
T Consensus       245 -----~~~~~D~Iv~dPPy  258 (329)
T TIGR01177       245 -----SSESVDAIATDPPY  258 (329)
T ss_pred             -----ccCCCCEEEECCCC
Confidence                 12469999998777

This family is found exclusively in the Archaea.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.64  E-value=0.00036  Score=65.12  Aligned_cols=90  Identities=13%  Similarity=0.116  Sum_probs=67.0

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP  146 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~  146 (413)
                      .|-+...+++.|. ++++..++|..+|.|..|..+.+..  ++|+++|+++.+++.++++++..  .++.++++++.+. 
T Consensus        63 ~p~~~~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-  138 (212)
T PRK00312         63 QPYMVARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-  138 (212)
T ss_pred             cHHHHHHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-
Confidence            3444556677776 8889999999999999887555543  48999999999999998876643  3688898886432 


Q ss_pred             HHHHhcCCCCCCccEEEEcCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGv  168 (413)
                        +..    .+.+|.|+++..+
T Consensus       139 --~~~----~~~fD~I~~~~~~  154 (212)
T PRK00312        139 --WPA----YAPFDRILVTAAA  154 (212)
T ss_pred             --CCc----CCCcCEEEEccCc
Confidence              111    1369999988654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=97.64  E-value=0.00015  Score=67.34  Aligned_cols=79  Identities=10%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +..+++|..+|.|..+..+++..|++.++|+|+++.+++.|++++..  .+++.+++++..++...+    .+.+.+|.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~----~~~~~~d~v   91 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF----FPDGSLSKV   91 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh----CCCCceeEE
Confidence            45699999999999999999999999999999999999998776543  248999998876543221    112368999


Q ss_pred             EEcCC
Q psy7191         163 IMDVG  167 (413)
Q Consensus       163 LfDLG  167 (413)
                      +++++
T Consensus        92 ~~~~p   96 (194)
T TIGR00091        92 FLNFP   96 (194)
T ss_pred             EEECC
Confidence            97754

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=97.61  E-value=0.00026  Score=67.58  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHh
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~  151 (413)
                      ...+.++.+. +.++..++|..+|.|..+..+++.+|.++|+|+|.++.+++.|+++.   +++.++.+++..+   .. 
T Consensus        19 ~~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~---~~-   90 (258)
T PRK01683         19 PARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASW---QP-   90 (258)
T ss_pred             HHHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhcc---CC-
Confidence            4567777775 77889999999999999999998888899999999999999998764   4677888876543   11 


Q ss_pred             cCCCCCCccEEEEcCC
Q psy7191         152 MNNNFNSIDGIIMDVG  167 (413)
Q Consensus       152 ~~~~~~~VDGILfDLG  167 (413)
                          ...+|.|+.+..
T Consensus        91 ----~~~fD~v~~~~~  102 (258)
T PRK01683         91 ----PQALDLIFANAS  102 (258)
T ss_pred             ----CCCccEEEEccC
Confidence                236999996643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=97.61  E-value=0.00023  Score=68.37  Aligned_cols=87  Identities=17%  Similarity=0.227  Sum_probs=68.6

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN  147 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~  147 (413)
                      |.+.+...+++.+. ..+++.++|..||.|.-+..+.+..|+++|+|+|.++.+++.|++.     ++.++++++.++  
T Consensus        13 ~~~~~~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~--   84 (255)
T PRK14103         13 HRGRPFYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDW--   84 (255)
T ss_pred             HhhCHHHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhC--
Confidence            44556678888886 7788999999999999999999888889999999999999998653     466777776433  


Q ss_pred             HHHhcCCCCCCccEEEEcCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGv  168 (413)
                       ..     .+.+|.|+....+
T Consensus        85 -~~-----~~~fD~v~~~~~l   99 (255)
T PRK14103         85 -KP-----KPDTDVVVSNAAL   99 (255)
T ss_pred             -CC-----CCCceEEEEehhh
Confidence             11     2369999987654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.60  E-value=0.00036  Score=65.98  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh---HHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL---PNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l---~~~L~~~~~~~~~  158 (413)
                      .+++..++|..+|+|+.|..+++.. +.++|+|+|+++.         ...+.++++++++.+.   ++++...+  ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~~~~v~~i~~D~~~~~~~~~i~~~~~--~~~  117 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DPIVGVDFLQGDFRDELVLKALLERVG--DSK  117 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cCCCCcEEEecCCCChHHHHHHHHHhC--CCC
Confidence            3678899999999999999999997 4589999999981         1234689999999884   34444333  246


Q ss_pred             ccEEEEc
Q psy7191         159 IDGIIMD  165 (413)
Q Consensus       159 VDGILfD  165 (413)
                      +|.|+-|
T Consensus       118 ~D~V~S~  124 (209)
T PRK11188        118 VQVVMSD  124 (209)
T ss_pred             CCEEecC
Confidence            8888844

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.57  E-value=0.00032  Score=72.68  Aligned_cols=91  Identities=18%  Similarity=0.159  Sum_probs=66.8

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNI  148 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~  148 (413)
                      .|++.+++.+. +.++..++|+.+|.|..+..+.+..  .+|+|+|.++.|++.|+++++.  ..++++++++..+.   
T Consensus       279 ~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~---  352 (431)
T TIGR00479       279 KLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV---  352 (431)
T ss_pred             HHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH---
Confidence            35566777775 6778899999999999999987653  5899999999999999887653  34899999987542   


Q ss_pred             HHhcCCCCCCccEEEEcCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLG  167 (413)
                      +.........+|.|++|-.
T Consensus       353 l~~~~~~~~~~D~vi~dPP  371 (431)
T TIGR00479       353 LPKQPWAGQIPDVLLLDPP  371 (431)
T ss_pred             HHHHHhcCCCCCEEEECcC
Confidence            3221111135899996544

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00740 methyltransferase, putative

Probab=97.57  E-value=0.00025  Score=67.34  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=58.9

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      .++..++|..+|.|..+..+++.+  |+++++|+|.++.+++.|++++..+   .+++++++++..+.       .  ..
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~--~~  122 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-------I--KN  122 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-------C--CC
Confidence            467899999999999999999875  6899999999999999998876543   27899999887542       1  24


Q ss_pred             ccEEEEc
Q psy7191         159 IDGIIMD  165 (413)
Q Consensus       159 VDGILfD  165 (413)
                      +|.|+..
T Consensus       123 ~d~v~~~  129 (239)
T TIGR00740       123 ASMVILN  129 (239)
T ss_pred             CCEEeee
Confidence            7876643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.57  E-value=0.00018  Score=71.85  Aligned_cols=85  Identities=13%  Similarity=0.063  Sum_probs=62.5

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L  149 (413)
                      |++.+.+.+. ..++..++|+.+|.|..+..+++.  ..+|+|+|.++.|++.|+++.+..  +++++++++..++   +
T Consensus       161 l~~~v~~~l~-~~~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~---~  234 (315)
T PRK03522        161 LYATARDWVR-ELPPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQF---A  234 (315)
T ss_pred             HHHHHHHHHH-hcCCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHH---H
Confidence            4444555554 345689999999999999988874  468999999999999998876543  3789998876543   3


Q ss_pred             HhcCCCCCCccEEEEc
Q psy7191         150 KNMNNNFNSIDGIIMD  165 (413)
Q Consensus       150 ~~~~~~~~~VDGILfD  165 (413)
                      ...   .+.+|.|++|
T Consensus       235 ~~~---~~~~D~Vv~d  247 (315)
T PRK03522        235 TAQ---GEVPDLVLVN  247 (315)
T ss_pred             Hhc---CCCCeEEEEC
Confidence            221   1258999966

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.56  E-value=0.00023  Score=66.66  Aligned_cols=72  Identities=15%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++..++|..+|.|..+..++...|.++|+|+|.++.+++.|+++.+..  +++++++++..++..        .+++|.|
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~--------~~~fDlV  116 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ--------EEKFDVV  116 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC--------CCCccEE
Confidence            478999999999999999988888899999999999999998866543  368999988766431        1369999


Q ss_pred             EE
Q psy7191         163 IM  164 (413)
Q Consensus       163 Lf  164 (413)
                      +.
T Consensus       117 ~~  118 (187)
T PRK00107        117 TS  118 (187)
T ss_pred             EE
Confidence            95

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.55  E-value=0.00044  Score=67.97  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=65.2

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~  148 (413)
                      |++.+++.+....+...++|.++|.|.-+..++...|+.+|+|+|+++.|++.|+++.+.  .. ++.++++++.+   .
T Consensus       101 lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~---~  177 (284)
T TIGR00536       101 LVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE---P  177 (284)
T ss_pred             HHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc---c
Confidence            444555555312233689999999999999999988889999999999999999887653  23 69999887632   1


Q ss_pred             HHhcCCCCCCccEEEEcCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGv  168 (413)
                      +     ....+|.|+.|-.|
T Consensus       178 ~-----~~~~fDlIvsNPPy  192 (284)
T TIGR00536       178 L-----AGQKIDIIVSNPPY  192 (284)
T ss_pred             C-----cCCCccEEEECCCC
Confidence            1     11258888877666

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.55  E-value=0.00028  Score=74.03  Aligned_cols=79  Identities=18%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+++.++|..+|.|-.+..++...|+++|+|+|+++.|++.|+++.+..+ +++++++++.+..  +..    ...+|.|
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~--l~~----~~~FDLI  323 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTD--MPS----EGKWDII  323 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccc--ccc----CCCccEE
Confidence            35679999999999999999888888999999999999999998776544 8999998864321  111    1358999


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      +.|-.|
T Consensus       324 VSNPPY  329 (423)
T PRK14966        324 VSNPPY  329 (423)
T ss_pred             EECCCC
Confidence            976544

>PRK06202 hypothetical protein; Provisional

Probab=97.54  E-value=0.00064  Score=64.27  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=55.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc----CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI----GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~----p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|..||.|+.+..|++..    ++.+|+|+|.++.+++.|+++... .++.+.......+..       ..+.
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~~-------~~~~  129 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELVA-------EGER  129 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEecccccc-------cCCC
Confidence            4566799999999999999887643    456999999999999999876532 244444443333321       1246


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|+...+.
T Consensus       130 fD~V~~~~~l  139 (232)
T PRK06202        130 FDVVTSNHFL  139 (232)
T ss_pred             ccEEEECCee
Confidence            9999987654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=97.54  E-value=0.00032  Score=64.98  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             hHHhhhh--hccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-
Q psy7191          56 SLKRLSE--DIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-  132 (413)
Q Consensus        56 sl~~~~~--n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-  132 (413)
                      +|.|..+  +.|.+|..=.+.. +..+    ++..++|..+|+|..+..++...|+++|+|+|.++.+++.+++..+.. 
T Consensus        16 ~l~~~~~~~~~~~~~~~d~i~~-~~~~----~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~   90 (181)
T TIGR00138        16 NLTSLKTPEEIWERHILDSLKL-LEYL----DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG   90 (181)
T ss_pred             cccccCCHHHHHHHHHHHHHHH-HHhc----CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence            4555556  6666665433321 1222    378999999999988888877678899999999999999988765433 


Q ss_pred             -CCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191         133 -PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       133 -~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                       +++++++++..++.   .     .+.+|.|+.+
T Consensus        91 ~~~i~~i~~d~~~~~---~-----~~~fD~I~s~  116 (181)
T TIGR00138        91 LNNVEIVNGRAEDFQ---H-----EEQFDVITSR  116 (181)
T ss_pred             CCCeEEEecchhhcc---c-----cCCccEEEeh
Confidence             37999999876641   1     2369999865

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PTZ00146 fibrillarin; Provisional

Probab=97.53  E-value=0.00048  Score=69.12  Aligned_cols=80  Identities=14%  Similarity=0.146  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ++++..++|+.+|.|+-|..+++.. +.++|||+|.++.+++...+..+.-+++.++..+......+-.    ....||.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~----~~~~vDv  205 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRM----LVPMVDV  205 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhc----ccCCCCE
Confidence            6789999999999999999999987 5799999999987654332222212478888888765332221    1236999


Q ss_pred             EEEcC
Q psy7191         162 IIMDV  166 (413)
Q Consensus       162 ILfDL  166 (413)
                      |+.|.
T Consensus       206 V~~Dv  210 (293)
T PTZ00146        206 IFADV  210 (293)
T ss_pred             EEEeC
Confidence            99998

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.52  E-value=0.00069  Score=66.03  Aligned_cols=83  Identities=16%  Similarity=0.126  Sum_probs=65.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ....++.+. +.++..++|..+|.|+-+..+++.. .++|+|+|.++.+++.|+++....+++.++++++.+.       
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-------  111 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-------  111 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-------
Confidence            466777775 7889999999999999888887654 5799999999999999988765434788888887643       


Q ss_pred             CCCCCCccEEEE
Q psy7191         153 NNNFNSIDGIIM  164 (413)
Q Consensus       153 ~~~~~~VDGILf  164 (413)
                      .++.+.+|.|+.
T Consensus       112 ~~~~~~FD~V~s  123 (263)
T PTZ00098        112 DFPENTFDMIYS  123 (263)
T ss_pred             CCCCCCeEEEEE
Confidence            222346899886

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.50  E-value=0.00051  Score=52.90  Aligned_cols=75  Identities=23%  Similarity=0.262  Sum_probs=58.1

Q ss_pred             EEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191          89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus        89 ~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      ++|..+|.|+.+..+++ .+..+++++|.++.++..+++....  ..++.+++.++.+...    .  ...++|.|+.+.
T Consensus         2 ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~d~i~~~~   74 (107)
T cd02440           2 VLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP----E--ADESFDVIISDP   74 (107)
T ss_pred             eEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc----c--cCCceEEEEEcc
Confidence            68999999999999988 5668999999999999998743222  2378889988876543    1  124699999988


Q ss_pred             CCCc
Q psy7191         167 GISD  170 (413)
Q Consensus       167 GvSS  170 (413)
                      .+..
T Consensus        75 ~~~~   78 (107)
T cd02440          75 PLHH   78 (107)
T ss_pred             ceee
Confidence            8765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PHA03411 putative methyltransferase; Provisional

Probab=97.48  E-value=0.001  Score=66.44  Aligned_cols=129  Identities=15%  Similarity=0.146  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHH
Q psy7191          26 EYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILE  105 (413)
Q Consensus        26 ~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe  105 (413)
                      +-|++|+-.....+..-+-++.|-+=++|.-=--=+.-.|.+..+|+-.-++   . +.+.+.++|..+|.|.-+..++.
T Consensus         9 ~~l~~~~~~l~~~~~~~~~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~---~-~~~~grVLDLGcGsGilsl~la~   84 (279)
T PHA03411          9 QKLHDRVMELINSDRPLTYEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTI---D-AHCTGKVLDLCAGIGRLSFCMLH   84 (279)
T ss_pred             HHHHHHHHHHHhCCcccccCcHHHHHHhcccccccCceeEcCCHHHHHHHHh---c-cccCCeEEEcCCCCCHHHHHHHH
Confidence            3467777666666555555555555544432210012355556677655433   2 44567999999999999999888


Q ss_pred             hcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         106 NIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       106 ~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +.+..+|+|+|+++.+++.+++++   +++.++++++.++.   .     ...+|.|+.|-.+-
T Consensus        85 r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~---~-----~~kFDlIIsNPPF~  137 (279)
T PHA03411         85 RCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE---S-----NEKFDVVISNPPFG  137 (279)
T ss_pred             hCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc---c-----cCCCcEEEEcCCcc
Confidence            876679999999999999998763   46888998886542   1     13699999887774

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=97.45  E-value=0.00041  Score=66.65  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=60.4

Q ss_pred             CCCCEEEEEecCCchhHHHHHHh--cCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILEN--IGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~--~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      .++..++|..+|.|..+..+++.  .|+++|+|+|.++.+++.|+++++.+  . +++++++++.+++         ...
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC---------CCC
Confidence            46789999999999999998885  37899999999999999999887643  2 7999998876542         124


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|+..+..
T Consensus       126 ~D~vv~~~~l  135 (247)
T PRK15451        126 ASMVVLNFTL  135 (247)
T ss_pred             CCEEehhhHH
Confidence            7888865443

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.43  E-value=0.00056  Score=64.99  Aligned_cols=83  Identities=18%  Similarity=0.180  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++|++++|+-+|-|..|..++...+..+|+|+|..|.|++..++..+  .. .++.+++++.+++..        ...+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~~  170 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGKF  170 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-E
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------cccc
Confidence            568999999999999999999986666799999999999999876543  22 379999998776533        1369


Q ss_pred             cEEEEcCCCCccCc
Q psy7191         160 DGIIMDVGISDSQA  173 (413)
Q Consensus       160 DGILfDLGvSS~Ql  173 (413)
                      |.|+++|.-++..+
T Consensus       171 drvim~lp~~~~~f  184 (200)
T PF02475_consen  171 DRVIMNLPESSLEF  184 (200)
T ss_dssp             EEEEE--TSSGGGG
T ss_pred             CEEEECChHHHHHH
Confidence            99999999888754

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG1122|consensus

Probab=97.41  E-value=0.00023  Score=74.35  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             ccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191          79 GLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      .|. |+||..++|+|...||.|++|.....+ |.|||.|....-+..-+.+++..+  +..+.+.+-.++.    +-.+.
T Consensus       236 aL~-Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~----~~~~~  310 (460)
T KOG1122|consen  236 ALD-PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP----EKEFP  310 (460)
T ss_pred             ecC-CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc----ccccC
Confidence            454 999999999999999999999998864 999999999998888777766544  4444443333221    11122


Q ss_pred             CCCccEEEEcCCCCcc
Q psy7191         156 FNSIDGIIMDVGISDS  171 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~  171 (413)
                       ++||.||+|..||-.
T Consensus       311 -~~fDRVLLDAPCSGt  325 (460)
T KOG1122|consen  311 -GSFDRVLLDAPCSGT  325 (460)
T ss_pred             -cccceeeecCCCCCC
Confidence             379999999999853

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.40  E-value=0.0007  Score=61.52  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=58.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+++.++|..+|.|..+..+.+..+  +|+|+|.++.+++.++++.+... ++.+++++....   +      .+.+|.|
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~------~~~fD~V   86 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG---V------RGKFDVI   86 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc---c------CCcccEE
Confidence            3457899999999999999988765  89999999999999988765443 677888776442   1      1368999


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      +.|..+
T Consensus        87 i~n~p~   92 (179)
T TIGR00537        87 LFNPPY   92 (179)
T ss_pred             EECCCC
Confidence            987766

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.40  E-value=0.001  Score=69.43  Aligned_cols=84  Identities=18%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~  151 (413)
                      .+++++.+. +.++..++|..+|.|+++..+++.. +++|+|+|+++.+++.|+++..... +++++++++.++.     
T Consensus       255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-----  327 (475)
T PLN02336        255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-----  327 (475)
T ss_pred             HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-----
Confidence            345666665 6778899999999999998887765 6799999999999999987654433 8899998876542     


Q ss_pred             cCCCCCCccEEEEc
Q psy7191         152 MNNNFNSIDGIIMD  165 (413)
Q Consensus       152 ~~~~~~~VDGILfD  165 (413)
                        ++.+.+|.|+..
T Consensus       328 --~~~~~fD~I~s~  339 (475)
T PLN02336        328 --YPDNSFDVIYSR  339 (475)
T ss_pred             --CCCCCEEEEEEC
Confidence              222469999853

>KOG2730|consensus

Probab=97.39  E-value=0.00015  Score=70.37  Aligned_cols=81  Identities=23%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             ccccchHhHHhccCC----CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEec
Q psy7191          68 KYPRTFQTSASGLND----SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYG  140 (413)
Q Consensus        68 H~pvll~evi~~L~~----~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~  140 (413)
                      -++|..+.+...+..    .-....+||+-+|+||-|..+..+.|  .|||+|+||.-|+.|+.+++-|+   |++|+++
T Consensus        73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~G  150 (263)
T KOG2730|consen   73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICG  150 (263)
T ss_pred             eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEec
Confidence            345655555555421    11346889999999999999887764  69999999999999999988763   9999999


Q ss_pred             CCCChHHHHH
Q psy7191         141 KFSDLPNILK  150 (413)
Q Consensus       141 nFs~l~~~L~  150 (413)
                      +|-++..-|+
T Consensus       151 D~ld~~~~lq  160 (263)
T KOG2730|consen  151 DFLDLASKLK  160 (263)
T ss_pred             hHHHHHHHHh
Confidence            9987766554

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=97.39  E-value=0.0007  Score=63.35  Aligned_cols=96  Identities=11%  Similarity=0.109  Sum_probs=66.5

Q ss_pred             hHHhhhhhccCCccccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--
Q psy7191          56 SLKRLSEDIYNKKYPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--  132 (413)
Q Consensus        56 sl~~~~~n~y~~H~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--  132 (413)
                      .|+++.+..=..|- .+.+.+++.|.. ..++..++|..||.|..+..+++.  +.+|+|+|.++++++.|++++...  
T Consensus        26 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~  102 (219)
T TIGR02021        26 PVSRVRQTVREGRA-AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDV  102 (219)
T ss_pred             hhHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC
Confidence            34444443322233 344555666541 346789999999999999998765  468999999999999998876432  


Q ss_pred             -CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191         133 -PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       133 -~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                       .++.++++++.+++          +.+|.|+.
T Consensus       103 ~~~i~~~~~d~~~~~----------~~fD~ii~  125 (219)
T TIGR02021       103 AGNVEFEVNDLLSLC----------GEFDIVVC  125 (219)
T ss_pred             CCceEEEECChhhCC----------CCcCEEEE
Confidence             27888888876542          25888875

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.36  E-value=0.0015  Score=61.42  Aligned_cols=92  Identities=16%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCCCeEEEecCC
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDPRLVPVYGKF  142 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~rv~~i~~nF  142 (413)
                      |.+ .|+-.+++...-     ..++||..||.|+|..+++...|+..++|+|+....+..+.++..  ..+++.+++++.
T Consensus         3 ~~~-~~~~~~~~f~~~-----~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da   76 (195)
T PF02390_consen    3 YQN-EPLDWQEIFGND-----NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA   76 (195)
T ss_dssp             --S-CTTCHHHHHTSC-----CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C
T ss_pred             ccc-CccCHHHHcCCC-----CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH
Confidence            445 677777776543     339999999999999999999999999999999999999765543  345999999998


Q ss_pred             CCh-HHHHHhcCCCCCCccEEEEcCC
Q psy7191         143 SDL-PNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       143 s~l-~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ..+ ..++.     ++.+|.|.+.+.
T Consensus        77 ~~~l~~~~~-----~~~v~~i~i~FP   97 (195)
T PF02390_consen   77 RELLRRLFP-----PGSVDRIYINFP   97 (195)
T ss_dssp             TTHHHHHST-----TTSEEEEEEES-
T ss_pred             HHHHhhccc-----CCchheEEEeCC
Confidence            874 43332     357999986654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=97.36  E-value=0.00043  Score=64.02  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=52.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCE---------EEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHH
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVK---------VICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~---------Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~  150 (413)
                      .+++.+++|-.||.|.=-..-+...++..         ++|+|+|+.+++.|+++++.+  . .+.+.+.+|.++.  + 
T Consensus        26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~--~-  102 (179)
T PF01170_consen   26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP--L-  102 (179)
T ss_dssp             --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG--G-
T ss_pred             CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc--c-
Confidence            77889999999999953322222224434         999999999999999887643  3 7889999999887  2 


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                          ..+.+|.|+.|..|
T Consensus       103 ----~~~~~d~IvtnPPy  116 (179)
T PF01170_consen  103 ----PDGSVDAIVTNPPY  116 (179)
T ss_dssp             ----TTSBSCEEEEE--S
T ss_pred             ----ccCCCCEEEECcch
Confidence                12469999988877

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK06922 hypothetical protein; Provisional

Probab=97.35  E-value=0.00052  Score=75.46  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ..+++.++|..||+|..+..+.+.+|+++|+|+|+++.+++.|+++.... .++.+++++..+++..+.     .+.+|.
T Consensus       416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fe-----deSFDv  490 (677)
T PRK06922        416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFE-----KESVDT  490 (677)
T ss_pred             hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccC-----CCCEEE
Confidence            34678999999999998999988889999999999999999998765433 378888888766543332     346999


Q ss_pred             EEEcC
Q psy7191         162 IIMDV  166 (413)
Q Consensus       162 ILfDL  166 (413)
                      |++..
T Consensus       491 VVsn~  495 (677)
T PRK06922        491 IVYSS  495 (677)
T ss_pred             EEEch
Confidence            99653

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.35  E-value=0.00095  Score=65.42  Aligned_cols=95  Identities=11%  Similarity=0.083  Sum_probs=68.4

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHH
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~  150 (413)
                      -++..|. +.||..+|++--|.|.=|.+|+... |.|+||.+|..++..+.|++.++.+  . ++++.+.+..+-.  + 
T Consensus        31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g--~-  106 (247)
T PF08704_consen   31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG--F-  106 (247)
T ss_dssp             HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-----
T ss_pred             HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc--c-
Confidence            3556665 9999999999999999999999876 8899999999999999999876543  3 7999988864311  1 


Q ss_pred             hcCCCCCCccEEEEcCCCCccCcc
Q psy7191         151 NMNNNFNSIDGIIMDVGISDSQAN  174 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGvSS~Qld  174 (413)
                      ..++ ...+|+|++||+=.-.-|+
T Consensus       107 ~~~~-~~~~DavfLDlp~Pw~~i~  129 (247)
T PF08704_consen  107 DEEL-ESDFDAVFLDLPDPWEAIP  129 (247)
T ss_dssp             STT--TTSEEEEEEESSSGGGGHH
T ss_pred             cccc-cCcccEEEEeCCCHHHHHH
Confidence            1112 1469999999998766666

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.35  E-value=0.0012  Score=62.27  Aligned_cols=77  Identities=17%  Similarity=0.235  Sum_probs=55.5

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      +.+.+..+   .++..++|.-||.|..+..+.+..|.+.++|+|++++|++.|++..   +++.+++++..+ +      
T Consensus        34 ~~~~l~~~---~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~------  100 (204)
T TIGR03587        34 FARALNRL---PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P------  100 (204)
T ss_pred             HHHHHHhc---CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C------
Confidence            34444443   3567899999999999999988878899999999999999998753   345556655433 0      


Q ss_pred             CCCCCCccEEE
Q psy7191         153 NNNFNSIDGII  163 (413)
Q Consensus       153 ~~~~~~VDGIL  163 (413)
                       ...+.+|.|+
T Consensus       101 -~~~~sfD~V~  110 (204)
T TIGR03587       101 -FKDNFFDLVL  110 (204)
T ss_pred             -CCCCCEEEEE
Confidence             1123577777

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.34  E-value=0.002  Score=62.19  Aligned_cols=114  Identities=19%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             HhHHhhhhhccCCccccchHhHHhcc---CCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhc
Q psy7191          55 ASLKRLSEDIYNKKYPRTFQTSASGL---NDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        55 ~sl~~~~~n~y~~H~pvll~evi~~L---~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      .-++++-..-+-...|++..|....|   ....+.+.++...-+.|.-|..|+..+| +++|+++|+|++..+.|+++++
T Consensus        26 ~~~~~~~e~a~~~~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~  105 (219)
T COG4122          26 ALLAELEEFARENGVPIIDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA  105 (219)
T ss_pred             hHHHHHHHHhHhcCCCCCChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH
Confidence            45678888888999999988877666   2256778999999999988888888888 8999999999999999999887


Q ss_pred             CCC---CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccC
Q psy7191         131 NDP---RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       131 ~~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Q  172 (413)
                      .++   ++.++.+  -+--+.|...  ..+++|.|++|-.=+.+.
T Consensus       106 ~ag~~~~i~~~~~--gdal~~l~~~--~~~~fDliFIDadK~~yp  146 (219)
T COG4122         106 EAGVDDRIELLLG--GDALDVLSRL--LDGSFDLVFIDADKADYP  146 (219)
T ss_pred             HcCCcceEEEEec--CcHHHHHHhc--cCCCccEEEEeCChhhCH
Confidence            653   7888876  3333455541  235799999998765443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.33  E-value=0.001  Score=64.02  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=70.1

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCC
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFS  143 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs  143 (413)
                      ++|...-+.+..|....+.+.++|...|.|.-+..|+...+ +++|+++|+|+++++.|+++++..   .++++++++..
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            33444444555554455678999999999987888888775 699999999999999999876643   38999999875


Q ss_pred             Ch-HHHHHhcCCCCCCccEEEEcCC
Q psy7191         144 DL-PNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       144 ~l-~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      +. +.+... + ..+.+|.|++|.-
T Consensus       131 ~~L~~l~~~-~-~~~~fD~VfiDa~  153 (234)
T PLN02781        131 SALDQLLNN-D-PKPEFDFAFVDAD  153 (234)
T ss_pred             HHHHHHHhC-C-CCCCCCEEEECCC
Confidence            43 222221 1 1246999998853

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.32  E-value=0.0008  Score=71.84  Aligned_cols=78  Identities=18%  Similarity=0.212  Sum_probs=63.2

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +..++|..+|.|.-+..++...|+++|+|+|+++.|++.|+++.+.+   +++.++++++-+   .+     ....+|.|
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~---~~-----~~~~fDlI  210 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE---NI-----EKQKFDFI  210 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh---hC-----cCCCccEE
Confidence            46899999999999999999889999999999999999999876533   378999888532   11     12369999


Q ss_pred             EEcCCCCcc
Q psy7191         163 IMDVGISDS  171 (413)
Q Consensus       163 LfDLGvSS~  171 (413)
                      +.|..|-..
T Consensus       211 vsNPPYi~~  219 (506)
T PRK01544        211 VSNPPYISH  219 (506)
T ss_pred             EECCCCCCc
Confidence            999988543

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=97.30  E-value=0.00085  Score=66.51  Aligned_cols=88  Identities=17%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecC-CCChHHHHHhcCCCCCCccEEEE
Q psy7191          88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGK-FSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~n-Fs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      .++|.+.|.|==+.+++...|++.|+|.|++|.|++.|+++.+..  .++.+++++ |+.+.          +++|.|++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~----------~~fDlIVs  182 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLR----------GKFDLIVS  182 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccC----------CceeEEEe
Confidence            799999999999999999999999999999999999999876654  366666654 44432          36999999


Q ss_pred             cCCCCccCccCCCCccCCCCCCCcccCCC
Q psy7191         165 DVGISDSQANSTRGFKPDSNSLLDMRMSQ  193 (413)
Q Consensus       165 DLGvSS~Qld~~RGFSf~~dgPLDMRMd~  193 (413)
                      |=.|    |..+    .....|-++|.+|
T Consensus       183 NPPY----ip~~----~~~~~~~~~~~EP  203 (280)
T COG2890         183 NPPY----IPAE----DPELLPEVVRYEP  203 (280)
T ss_pred             CCCC----CCCc----ccccChhhhccCH
Confidence            9888    5422    1223455666666

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.29  E-value=0.0012  Score=61.50  Aligned_cols=81  Identities=15%  Similarity=0.213  Sum_probs=59.1

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHh
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~  151 (413)
                      .++++.+. ..+++.++|..+|.|.++..++++  ..+|+|+|.++.|++.++++.+..  .+++++..++.+++     
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~-----   91 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLT-----   91 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCC-----
Confidence            34555665 556789999999999999998875  468999999999999998765432  35777777655431     


Q ss_pred             cCCCCCCccEEEEc
Q psy7191         152 MNNNFNSIDGIIMD  165 (413)
Q Consensus       152 ~~~~~~~VDGILfD  165 (413)
                        + .+.+|.|+.-
T Consensus        92 --~-~~~fD~I~~~  102 (197)
T PRK11207         92 --F-DGEYDFILST  102 (197)
T ss_pred             --c-CCCcCEEEEe
Confidence              1 1358888754

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.23  E-value=0.0016  Score=61.58  Aligned_cols=92  Identities=15%  Similarity=0.040  Sum_probs=65.4

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~  147 (413)
                      -.+.+.+++.|....++..++|+.+|.|.=+...|.+. ..+|+++|+|+.|++.++++++..  .++.++++++.   +
T Consensus        38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~---~  113 (199)
T PRK10909         38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL---S  113 (199)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH---H
Confidence            34445556666423467899999999998887666664 369999999999999998876543  37888888753   3


Q ss_pred             HHHhcCCCCCCccEEEEcCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ++....   ..+|.|++|-.|
T Consensus       114 ~l~~~~---~~fDlV~~DPPy  131 (199)
T PRK10909        114 FLAQPG---TPHNVVFVDPPF  131 (199)
T ss_pred             HHhhcC---CCceEEEECCCC
Confidence            343221   258999977665

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.23  E-value=0.0016  Score=59.79  Aligned_cols=82  Identities=17%  Similarity=0.255  Sum_probs=57.6

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH---HHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP---NIL  149 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~---~~L  149 (413)
                      .|+.+.+..+.+++.++|..+|+||-|..++... +.++|+|+|+++.+         ..+++.+++.++.+..   .+.
T Consensus        21 ~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~   91 (188)
T TIGR00438        21 LQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIR   91 (188)
T ss_pred             HHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHH
Confidence            3444444446789999999999999999999987 56899999999864         1246778888876532   222


Q ss_pred             HhcCCCCCCccEEEEcC
Q psy7191         150 KNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDL  166 (413)
                      ...+  .+++|.|+.|.
T Consensus        92 ~~~~--~~~~D~V~~~~  106 (188)
T TIGR00438        92 ERVG--DDKVDVVMSDA  106 (188)
T ss_pred             HHhC--CCCccEEEcCC
Confidence            2221  23688888553

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.21  E-value=0.0016  Score=62.89  Aligned_cols=77  Identities=27%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +.++..++|..+|+|..+..++... +.++|+|+|+++.+++.|+++...  +++++++.+++.+++       +..+.+
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-------~~~~~f  147 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-------VADNSV  147 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-------CCCCce
Confidence            6789999999999986666666655 568999999999999999886543  348888888875542       223469


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.|+.+.
T Consensus       148 D~Vi~~~  154 (272)
T PRK11873        148 DVIISNC  154 (272)
T ss_pred             eEEEEcC
Confidence            9998764

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.19  E-value=0.00086  Score=68.75  Aligned_cols=74  Identities=11%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|+.+|.|..+..++..  ..+|+|+|+++.|++.|+++.+..  .++.++++++.+.   +...   ...+|.
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~---~~~~---~~~~D~  303 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKF---ATAQ---MSAPEL  303 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH---HHhc---CCCCCE
Confidence            45689999999999999888754  468999999999999998876433  3788998887543   3221   124899


Q ss_pred             EEEc
Q psy7191         162 IIMD  165 (413)
Q Consensus       162 ILfD  165 (413)
                      |++|
T Consensus       304 vi~D  307 (374)
T TIGR02085       304 VLVN  307 (374)
T ss_pred             EEEC
Confidence            9955

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.15  E-value=0.0016  Score=64.44  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~  148 (413)
                      +++-+++.+. ++||..++|..||.||=+..+.+++ +++|.|+..+++-.+.++++.+..   +++++...+|.+++. 
T Consensus        50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-  126 (273)
T PF02353_consen   50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-  126 (273)
T ss_dssp             HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred             HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence            4556678886 9999999999999999999999998 689999999999999998876543   389999999876642 


Q ss_pred             HHhcCCCCCCccEEE
Q psy7191         149 LKNMNNNFNSIDGII  163 (413)
Q Consensus       149 L~~~~~~~~~VDGIL  163 (413)
                               ++|.|+
T Consensus       127 ---------~fD~Iv  132 (273)
T PF02353_consen  127 ---------KFDRIV  132 (273)
T ss_dssp             ---------S-SEEE
T ss_pred             ---------CCCEEE
Confidence                     488876

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.11  E-value=0.0024  Score=62.15  Aligned_cols=70  Identities=21%  Similarity=0.329  Sum_probs=54.5

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCC---CEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGN---VKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~---g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .++..++|.-+|.|.++..+.+.+|.   +.|+|+|+++.|++.|+++   ++++.++.++..+++       +..+.+|
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~---~~~~~~~~~d~~~lp-------~~~~sfD  153 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR---YPQVTFCVASSHRLP-------FADQSLD  153 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---CCCCeEEEeecccCC-------CcCCcee
Confidence            45578999999999999999988763   3799999999999998765   346777777766543       2234688


Q ss_pred             EEE
Q psy7191         161 GII  163 (413)
Q Consensus       161 GIL  163 (413)
                      .|+
T Consensus       154 ~I~  156 (272)
T PRK11088        154 AII  156 (272)
T ss_pred             EEE
Confidence            887

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.11  E-value=0.0036  Score=49.07  Aligned_cols=67  Identities=25%  Similarity=0.354  Sum_probs=50.0

Q ss_pred             EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191          90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        90 VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      +|.-+|.|-.+..+++. +...|+|+|.++.+++.++++... .++.++++++.+++       ++.+.+|.|+..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-------~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-------FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-------S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-------cccccccccccc
Confidence            68899999777777766 788999999999999999987653 35668899988772       234579999754

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.0032  Score=60.50  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=77.6

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP  146 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~  146 (413)
                      -|-|.--.++.|. ++++..+++.-.|.| +..|+|.++- ++|+++|++++-.+.|+++++..  .++++++++=+.  
T Consensus        57 ~P~~vA~m~~~L~-~~~g~~VLEIGtGsG-Y~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~--  131 (209)
T COG2518          57 APHMVARMLQLLE-LKPGDRVLEIGTGSG-YQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK--  131 (209)
T ss_pred             CcHHHHHHHHHhC-CCCCCeEEEECCCch-HHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc--
Confidence            4778899999997 999999999999999 5556666653 39999999999999999988754  479999887653  


Q ss_pred             HHHHhcCCCC-CCccEEEEcCCCCcc------Ccc-CCC
Q psy7191         147 NILKNMNNNF-NSIDGIIMDVGISDS------QAN-STR  177 (413)
Q Consensus       147 ~~L~~~~~~~-~~VDGILfDLGvSS~------Qld-~~R  177 (413)
                            |++. .++|.|++..++...      ||. ..|
T Consensus       132 ------G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGr  164 (209)
T COG2518         132 ------GWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGR  164 (209)
T ss_pred             ------CCCCCCCcCEEEEeeccCCCCHHHHHhcccCCE
Confidence                  3322 469999999998764      666 544

>TIGR03438 probable methyltransferase

Probab=97.09  E-value=0.0027  Score=63.12  Aligned_cols=67  Identities=13%  Similarity=0.328  Sum_probs=55.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC-CC--CeEEEecCCCChHHHHH
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN-DP--RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~-~~--rv~~i~~nFs~l~~~L~  150 (413)
                      .++..+||.-+|+|-.|..|++.++ ..+++|+|+++++++.|.+++.. ++  ++.+++++|.+...++.
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~  132 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP  132 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc
Confidence            3567999999999999999999986 57999999999999998776543 44  67789999987544443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.07  E-value=0.0017  Score=63.80  Aligned_cols=81  Identities=20%  Similarity=0.257  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +...+.++|.+.|+|.=+.++.++.+++++.|+++|+++.+.|++..+.  .. |++++++++.++.+...     ..++
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~-----~~~f  116 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV-----FASF  116 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc-----cccc
Confidence            3447899999999999888888888889999999999999999886653  33 99999999887655443     2358


Q ss_pred             cEEEEcCCC
Q psy7191         160 DGIIMDVGI  168 (413)
Q Consensus       160 DGILfDLGv  168 (413)
                      |.|+.|=.|
T Consensus       117 D~Ii~NPPy  125 (248)
T COG4123         117 DLIICNPPY  125 (248)
T ss_pred             CEEEeCCCC
Confidence            999977666

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0013  Score=69.16  Aligned_cols=89  Identities=17%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~  147 (413)
                      ..|++.+++.+. ..+++.++|+.||.|.-|..+..+  ..+|+|+++.++|++.|+++.+..  .+++++.++=..+..
T Consensus       279 ekl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~  355 (432)
T COG2265         279 EKLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTP  355 (432)
T ss_pred             HHHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence            368899999997 778899999999999999988744  368999999999999999876643  378888776544433


Q ss_pred             HHHhcCCCCCCccEEEEc
Q psy7191         148 ILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfD  165 (413)
                      -+.+ +   ..+|.||+|
T Consensus       356 ~~~~-~---~~~d~VvvD  369 (432)
T COG2265         356 AWWE-G---YKPDVVVVD  369 (432)
T ss_pred             hccc-c---CCCCEEEEC
Confidence            2221 1   258999944

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=97.05  E-value=0.0032  Score=64.22  Aligned_cols=81  Identities=14%  Similarity=0.117  Sum_probs=58.9

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ++.|. ....+.++|.-||.|..+..+++..|..+|+++|+++.|++.|++.++..+ ...++.++...   .     + 
T Consensus       189 l~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~---~-----~-  258 (342)
T PRK09489        189 LSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFS---D-----I-  258 (342)
T ss_pred             HHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccccc---c-----c-
Confidence            44443 344568999999999999999999898999999999999999988765432 44555554321   1     1 


Q ss_pred             CCCccEEEEcCC
Q psy7191         156 FNSIDGIIMDVG  167 (413)
Q Consensus       156 ~~~VDGILfDLG  167 (413)
                      .+.+|.|+.|..
T Consensus       259 ~~~fDlIvsNPP  270 (342)
T PRK09489        259 KGRFDMIISNPP  270 (342)
T ss_pred             CCCccEEEECCC
Confidence            236888886543

>PRK05785 hypothetical protein; Provisional

Probab=97.04  E-value=0.0024  Score=61.05  Aligned_cols=146  Identities=16%  Similarity=0.177  Sum_probs=97.6

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +++.++|..+|+|-.+..+.+.. ++.|+|+|.++++++.|++..      ..+++++.+++       ++.+++|.|+.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-------~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-------FRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-------CCCCCEEEEEe
Confidence            46899999999998888888776 579999999999999987642      23566665442       33457999998


Q ss_pred             cCCCCccCcc-CCCCccCC----CC--CCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHH-HHHHHHHHHcc
Q psy7191         165 DVGISDSQAN-STRGFKPD----SN--SLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQ-IARAIIETRYT  236 (413)
Q Consensus       165 DLGvSS~Qld-~~RGFSf~----~d--gPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~r-IA~aIv~~R~~  236 (413)
                      -+|+  ++++ +++.++=.    +.  +-|++- .|.......+.+-|...-+-.|-+-++..+.+.+ +...| +    
T Consensus       117 ~~~l--~~~~d~~~~l~e~~RvLkp~~~ile~~-~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si-~----  188 (226)
T PRK05785        117 SFAL--HASDNIEKVIAEFTRVSRKQVGFIAMG-KPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIY-E----  188 (226)
T ss_pred             cChh--hccCCHHHHHHHHHHHhcCceEEEEeC-CCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-H----
Confidence            7776  4555 66655422    11  112221 1122234566677777777777777777666653 34333 2    


Q ss_pred             CCCCCCHHHHHHHHHhhc
Q psy7191         237 FKKLERTRDLNELVASVS  254 (413)
Q Consensus       237 ~~~i~TT~eL~~iI~~~~  254 (413)
                        .+.+..+|.++++++.
T Consensus       189 --~f~~~~~~~~~~~~~~  204 (226)
T PRK05785        189 --RLPTNSFHREIFEKYA  204 (226)
T ss_pred             --HCCCHHHHHHHHHHHh
Confidence              4677899999999863

>PRK04457 spermidine synthase; Provisional

Probab=97.02  E-value=0.0023  Score=62.65  Aligned_cols=76  Identities=12%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      +...++|.-+|+|.-+..+++..|.++|+++|+||++++.|++....  . +|+++++++..+   ++...   ..++|.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~---~l~~~---~~~yD~  139 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAE---YIAVH---RHSTDV  139 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHH---HHHhC---CCCCCE
Confidence            35678999999999888999988999999999999999999986542  2 489999887653   44432   246999


Q ss_pred             EEEcC
Q psy7191         162 IIMDV  166 (413)
Q Consensus       162 ILfDL  166 (413)
                      |++|.
T Consensus       140 I~~D~  144 (262)
T PRK04457        140 ILVDG  144 (262)
T ss_pred             EEEeC
Confidence            99984

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.01  E-value=0.0039  Score=57.94  Aligned_cols=56  Identities=14%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      ..+++++.+. +.+++.++|.-+|.|..+..+.++  ...|+|+|.++.|++.++++.+
T Consensus        18 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~   73 (195)
T TIGR00477        18 THSAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKA   73 (195)
T ss_pred             chHHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHH
Confidence            3467777775 566789999999999888888764  4689999999999999877654

Part of a tellurite-reducing operon tehA and tehB

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.01  E-value=0.0036  Score=57.73  Aligned_cols=75  Identities=24%  Similarity=0.347  Sum_probs=60.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      ....++|..+|.|..+..+++..|..+++|+|.++.+++.+++...  +++.++.+++.++.       ...+.+|.|+.
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-------~~~~~fD~vi~  104 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-------LEDSSFDLIVS  104 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-------CCCCceeEEEE
Confidence            3478999999999999999999888899999999999999887654  37788888776542       12346999997


Q ss_pred             cCCC
Q psy7191         165 DVGI  168 (413)
Q Consensus       165 DLGv  168 (413)
                      +...
T Consensus       105 ~~~l  108 (240)
T TIGR02072       105 NLAL  108 (240)
T ss_pred             hhhh
Confidence            6543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02476 O-methyltransferase

Probab=96.98  E-value=0.0077  Score=60.11  Aligned_cols=97  Identities=15%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             cccchHhHHhcc---CCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecC
Q psy7191          69 YPRTFQTSASGL---NDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGK  141 (413)
Q Consensus        69 ~pvll~evi~~L---~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~n  141 (413)
                      .|.+-.+....|   ....+.+.+++...|.|.=|..++..+| +++|+++|+|+++.+.|++.++.+  . +++++.++
T Consensus        99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd  178 (278)
T PLN02476         99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL  178 (278)
T ss_pred             ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            444444444433   3245678999999999988888888775 689999999999999999877654  3 89999988


Q ss_pred             CCCh-HHHHHhcCCCCCCccEEEEcCC
Q psy7191         142 FSDL-PNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       142 Fs~l-~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ..+. +++..+ + ..+.+|.|++|..
T Consensus       179 A~e~L~~l~~~-~-~~~~FD~VFIDa~  203 (278)
T PLN02476        179 AAESLKSMIQN-G-EGSSYDFAFVDAD  203 (278)
T ss_pred             HHHHHHHHHhc-c-cCCCCCEEEECCC
Confidence            6542 222211 1 1246999998765

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.98  E-value=0.0045  Score=64.15  Aligned_cols=76  Identities=11%  Similarity=0.145  Sum_probs=58.9

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-----CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-----PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-----~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++.++|..||+|--+..++++.|..+|+++|+++.|++.|+++.+..     .++.++.++.-.        ++...++
T Consensus       228 ~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~--------~~~~~~f  299 (378)
T PRK15001        228 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS--------GVEPFRF  299 (378)
T ss_pred             cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc--------cCCCCCE
Confidence            357899999999999999999999999999999999999998865422     267777766421        1112369


Q ss_pred             cEEEEcCCC
Q psy7191         160 DGIIMDVGI  168 (413)
Q Consensus       160 DGILfDLGv  168 (413)
                      |.|+.|-.+
T Consensus       300 DlIlsNPPf  308 (378)
T PRK15001        300 NAVLCNPPF  308 (378)
T ss_pred             EEEEECcCc
Confidence            999977665

>PLN03075 nicotianamine synthase; Provisional

Probab=96.96  E-value=0.0021  Score=64.70  Aligned_cols=102  Identities=15%  Similarity=0.146  Sum_probs=74.1

Q ss_pred             HHhhhhhccCCccccchHhHHhccCC--CCCCCEEEEEecCCchhHHHHHHh--cCCCEEEEEeCCHHHHHHHHhhhcC-
Q psy7191          57 LKRLSEDIYNKKYPRTFQTSASGLND--SSDDVTMIDMTYGDGNHTRLILEN--IGNVKVICLDRDKESFEKAKTLAAN-  131 (413)
Q Consensus        57 l~~~~~n~y~~H~pvll~evi~~L~~--~~~~~i~VDaTlG~GGHS~aILe~--~p~g~Via~DrD~~Al~~Ak~ll~~-  131 (413)
                      ++.|.+=-|+.-|=-|..--.+.|..  ..+...++|.-+|.||-|..++.+  .|+++++|+|+|++|++.|++.... 
T Consensus        93 ~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~  172 (296)
T PLN03075         93 LDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD  172 (296)
T ss_pred             HHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc
Confidence            44455556666665555555555421  336789999999999998888874  4899999999999999999987732 


Q ss_pred             --C-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191         132 --D-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       132 --~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                        . ++++|..+|-.++...       .+.+|.|+.+
T Consensus       173 ~gL~~rV~F~~~Da~~~~~~-------l~~FDlVF~~  202 (296)
T PLN03075        173 PDLSKRMFFHTADVMDVTES-------LKEYDVVFLA  202 (296)
T ss_pred             cCccCCcEEEECchhhcccc-------cCCcCEEEEe
Confidence              2 3899999887664211       1369999988

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.93  E-value=0.0046  Score=61.10  Aligned_cols=73  Identities=25%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .++..++|..+|.|..+.+++. .+..+|+|+|+|+.|++.|+++....  . ++.++.++...   .      ..+++|
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~------~~~~fD  227 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---P------IEGKAD  227 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---c------cCCCce
Confidence            5678999999999988877764 45569999999999999998876432  2 55555544111   1      123689


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|++|+
T Consensus       228 lVvan~  233 (288)
T TIGR00406       228 VIVANI  233 (288)
T ss_pred             EEEEec
Confidence            998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=96.91  E-value=0.0034  Score=61.98  Aligned_cols=70  Identities=16%  Similarity=0.144  Sum_probs=57.8

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSD  144 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~  144 (413)
                      .+.+++.+. ..++..++|..+|.|..+..+++++|+++++++|. |.+++.++++.+..   +|++++.++|-.
T Consensus       138 ~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~  210 (306)
T TIGR02716       138 IQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK  210 (306)
T ss_pred             HHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence            444556665 67888999999999999999999999999999998 78999988765543   389999998754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=96.90  E-value=0.0036  Score=61.57  Aligned_cols=82  Identities=12%  Similarity=0.177  Sum_probs=56.6

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~  151 (413)
                      ..++++.+. ..+++.++|.-||.|..+..+++.  +.+|+|+|.++.|++.++++.+... ++.+...+.....     
T Consensus       109 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-----  180 (287)
T PRK12335        109 HSEVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-----  180 (287)
T ss_pred             cHHHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-----
Confidence            455566554 334569999999999999888764  4799999999999999887654322 5666655543321     


Q ss_pred             cCCCCCCccEEEEc
Q psy7191         152 MNNNFNSIDGIIMD  165 (413)
Q Consensus       152 ~~~~~~~VDGILfD  165 (413)
                        + .+.+|.|+.-
T Consensus       181 --~-~~~fD~I~~~  191 (287)
T PRK12335        181 --I-QEEYDFILST  191 (287)
T ss_pred             --c-cCCccEEEEc
Confidence              1 2357877643

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0035  Score=59.66  Aligned_cols=84  Identities=26%  Similarity=0.361  Sum_probs=61.0

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .-.|..++|+.+|+|  ..+|-..+ .-.+|+|+|+||+|++.++++..... ++.++.++-+.+.          ..+|
T Consensus        43 ~l~g~~V~DlG~GTG--~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----------~~~d  110 (198)
T COG2263          43 DLEGKTVLDLGAGTG--ILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----------GKFD  110 (198)
T ss_pred             CcCCCEEEEcCCCcC--HHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----------Cccc
Confidence            345778999999999  55555444 44699999999999999998766544 8999988877652          3588


Q ss_pred             EEEEcCCCCccCcc-CCCCc
Q psy7191         161 GIIMDVGISDSQAN-STRGF  179 (413)
Q Consensus       161 GILfDLGvSS~Qld-~~RGF  179 (413)
                      -+++|=..-+ |.. ++|=|
T Consensus       111 tvimNPPFG~-~~rhaDr~F  129 (198)
T COG2263         111 TVIMNPPFGS-QRRHADRPF  129 (198)
T ss_pred             eEEECCCCcc-ccccCCHHH
Confidence            8887765533 244 55544

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.89  E-value=0.0016  Score=66.34  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=50.3

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCC
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKF  142 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nF  142 (413)
                      .|++.+++.+. +.++ .++|+-+|.|..|..+.+..  .+|+|++.++.|++.|++.++.  ..++++++++-
T Consensus       184 ~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  184 KLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            46777888886 5555 78999999999999987764  5899999999999999886653  34889887653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=96.85  E-value=0.0051  Score=62.16  Aligned_cols=81  Identities=16%  Similarity=0.077  Sum_probs=57.8

Q ss_pred             cchHhHHhccCCC--CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-------CCeEEEecC
Q psy7191          71 RTFQTSASGLNDS--SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-------PRLVPVYGK  141 (413)
Q Consensus        71 vll~evi~~L~~~--~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-------~rv~~i~~n  141 (413)
                      .+++.+++.+...  .++..++|..+|.|.-+..+++.  +.+|+|+|+++.+++.|+++.+..       .++.+...+
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            4467777777411  25779999999999988888875  468999999999999998875431       245666655


Q ss_pred             CCChHHHHHhcCCCCCCccEEE
Q psy7191         142 FSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      ...+          .+.+|.|+
T Consensus       206 l~~l----------~~~fD~Vv  217 (315)
T PLN02585        206 LESL----------SGKYDTVT  217 (315)
T ss_pred             hhhc----------CCCcCEEE
Confidence            4322          13578776

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=96.81  E-value=0.0054  Score=61.41  Aligned_cols=71  Identities=17%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLP  146 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~  146 (413)
                      +.+++.|. ++||..++|.-||.||=+....+++ +++|+|++.+++..+.++++...  .+ +++++..++.++.
T Consensus        62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~  135 (283)
T COG2230          62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE  135 (283)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc
Confidence            45677786 9999999999999999999998888 78999999999999999886543  34 7888888877764

>PRK10742 putative methyltransferase; Provisional

Probab=96.80  E-value=0.0033  Score=61.94  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=61.6

Q ss_pred             HHhccCCCCCCC--EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC----------C-CCeEEEecCC
Q psy7191          76 SASGLNDSSDDV--TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN----------D-PRLVPVYGKF  142 (413)
Q Consensus        76 vi~~L~~~~~~~--i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~----------~-~rv~~i~~nF  142 (413)
                      ++.++. +++|.  .++|||+|.|..+..++..  +++|++++++|.+....++.++.          . .|+++++++.
T Consensus        78 l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da  154 (250)
T PRK10742         78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_pred             HHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence            345554 66777  8999999999888888766  67899999999988876654432          1 3677777765


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                         .++|....   ..+|.|.+|=-|.
T Consensus       155 ---~~~L~~~~---~~fDVVYlDPMfp  175 (250)
T PRK10742        155 ---LTALTDIT---PRPQVVYLDPMFP  175 (250)
T ss_pred             ---HHHHhhCC---CCCcEEEECCCCC
Confidence               35565532   2699999887663

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=96.79  E-value=0.008  Score=55.92  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=59.6

Q ss_pred             chHhHHhccCC--CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChH
Q psy7191          72 TFQTSASGLND--SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLP  146 (413)
Q Consensus        72 ll~evi~~L~~--~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~  146 (413)
                      +.+.+++.+..  ..++..++|..+|.|.-+..+++..  ..|+|+|.++.+++.|+++....   .++.++.+++... 
T Consensus        48 ~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-  124 (230)
T PRK07580         48 MRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-  124 (230)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-
Confidence            34555666541  2467799999999999999988764  46999999999999998865432   3788888774321 


Q ss_pred             HHHHhcCCCCCCccEEEEc
Q psy7191         147 NILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfD  165 (413)
                               .+.+|.|+..
T Consensus       125 ---------~~~fD~v~~~  134 (230)
T PRK07580        125 ---------LGRFDTVVCL  134 (230)
T ss_pred             ---------cCCcCEEEEc
Confidence                     1358888754

>PRK00811 spermidine synthase; Provisional

Probab=96.78  E-value=0.0056  Score=60.52  Aligned_cols=76  Identities=25%  Similarity=0.329  Sum_probs=59.7

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-------CCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-------DPRLVPVYGKFSDLPNILKNMNNNFN  157 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-------~~rv~~i~~nFs~l~~~L~~~~~~~~  157 (413)
                      +.+.++|+-+|.|+-+..+|+..+..+|.++|+|+++++.|++.+..       .+|++++.++...   ++...   .+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~---~l~~~---~~  149 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK---FVAET---EN  149 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH---HHhhC---CC
Confidence            34688999999999999999764457999999999999999886532       2489999887543   45432   34


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      ++|.|+.|+
T Consensus       150 ~yDvIi~D~  158 (283)
T PRK00811        150 SFDVIIVDS  158 (283)
T ss_pred             cccEEEECC
Confidence            799999986

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.74  E-value=0.007  Score=62.52  Aligned_cols=76  Identities=20%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCC
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      .+++.+. ++++..++|..+|.|+-+..+.+.. +++|+|+|.++++++.|+++.+.. .+++...++..+         
T Consensus       158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l---------  225 (383)
T PRK11705        158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL---------  225 (383)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc---------
Confidence            3556665 7889999999999999998887765 579999999999999998876432 467777666433         


Q ss_pred             CCCCccEEE
Q psy7191         155 NFNSIDGII  163 (413)
Q Consensus       155 ~~~~VDGIL  163 (413)
                       .+.+|.|+
T Consensus       226 -~~~fD~Iv  233 (383)
T PRK11705        226 -NGQFDRIV  233 (383)
T ss_pred             -CCCCCEEE
Confidence             13588876

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=96.69  E-value=0.0084  Score=58.76  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             hHHhhhhhccCCccccch--HhHHh---ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhh
Q psy7191          56 SLKRLSEDIYNKKYPRTF--QTSAS---GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLA  129 (413)
Q Consensus        56 sl~~~~~n~y~~H~pvll--~evi~---~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll  129 (413)
                      .|+.+.......+.|.|.  .+...   .|....+.+.++...-+.|.=|..|+..+| +|+|+++|+|++..+.|++.+
T Consensus        45 ~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~  124 (247)
T PLN02589         45 SMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVI  124 (247)
T ss_pred             HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHH
Confidence            456666666666778764  23333   333234457899999999977777877775 799999999999999999876


Q ss_pred             cCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         130 AND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       130 ~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      +..   .+++++.++..+.-.-|...+-..+.+|.|++|--
T Consensus       125 ~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad  165 (247)
T PLN02589        125 QKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD  165 (247)
T ss_pred             HHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence            543   39999999865532222111111247999998754

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=96.65  E-value=0.0086  Score=62.58  Aligned_cols=86  Identities=16%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCC
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      .+++.+. +.+++.++|+.+|.|.++..+.+..  .+|+|+|.++.+++.+++.....+++.+++++.....     ...
T Consensus        28 ~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~-----~~~   99 (475)
T PLN02336         28 EILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPD-----LNI   99 (475)
T ss_pred             HHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccc-----cCC
Confidence            3344554 5567899999999999999988764  5899999999999987654333357888888775321     112


Q ss_pred             CCCCccEEEEcCCC
Q psy7191         155 NFNSIDGIIMDVGI  168 (413)
Q Consensus       155 ~~~~VDGILfDLGv  168 (413)
                      +.+.+|.|+....+
T Consensus       100 ~~~~fD~I~~~~~l  113 (475)
T PLN02336        100 SDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCCEEEEehhhhH
Confidence            23468888876644

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.64  E-value=0.0098  Score=56.70  Aligned_cols=82  Identities=18%  Similarity=0.156  Sum_probs=57.5

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      .+.+++.|. ..+++.++|..||.|..+..+.+.  ..+|+|+|.++.+++.++++..   ...+++++...++      
T Consensus        31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~------   98 (251)
T PRK10258         31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP------   98 (251)
T ss_pred             HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc------
Confidence            344455554 445788999999999888877653  4789999999999999987642   2345667665542      


Q ss_pred             CCCCCCccEEEEcCC
Q psy7191         153 NNNFNSIDGIIMDVG  167 (413)
Q Consensus       153 ~~~~~~VDGILfDLG  167 (413)
                       +..+.+|.|+.++.
T Consensus        99 -~~~~~fD~V~s~~~  112 (251)
T PRK10258         99 -LATATFDLAWSNLA  112 (251)
T ss_pred             -CCCCcEEEEEECch
Confidence             22246888886543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.0087  Score=59.13  Aligned_cols=133  Identities=17%  Similarity=0.220  Sum_probs=89.8

Q ss_pred             cccccCccHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecC
Q psy7191          16 LEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYG   95 (413)
Q Consensus        16 ~~~~~grdl~~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG   95 (413)
                      .++-+|.+-|+.|+...      |-++-+-.+ ..-..+.+++|=..=.|-+-.    .-++..+. +.||..++|+-.|
T Consensus        37 ~~~vigk~~G~~i~s~~------G~~f~vl~p-~~~d~~~~~~R~tQiIyPKD~----~~I~~~~g-i~pg~rVlEAGtG  104 (256)
T COG2519          37 HDEVIGKPYGEVIKSHL------GVKFYVLKP-TPEDYLLSMKRRTQIIYPKDA----GYIVARLG-ISPGSRVLEAGTG  104 (256)
T ss_pred             hhhhcCCCCCceEEeeC------CceEEEeCC-CHHHHHHhCcCCCceecCCCH----HHHHHHcC-CCCCCEEEEcccC
Confidence            45666666676666544      333333333 223334445554444443332    33455565 8899999999999


Q ss_pred             CchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191          96 DGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus        96 ~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .|-=|..|+... |.|+|+.+|++++-.+.|++++..+  . ++++..++..+-   ..     ...||+|++|+.=
T Consensus       105 SG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~---~~-----~~~vDav~LDmp~  173 (256)
T COG2519         105 SGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG---ID-----EEDVDAVFLDLPD  173 (256)
T ss_pred             chHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc---cc-----ccccCEEEEcCCC
Confidence            999999998765 7899999999999999999887653  3 688887665543   21     2369999988764

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=96.62  E-value=0.0079  Score=57.02  Aligned_cols=68  Identities=15%  Similarity=0.242  Sum_probs=48.7

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD  144 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~  144 (413)
                      .+|++++. .-+.+.++|..+|.|.+|..+.++  +-.|.|+|+++.|++.++++.+..+ .++....++.+
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~   88 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLND   88 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCC
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchh
Confidence            45666665 445789999999999999999887  4579999999999999876554333 46666666544

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.62  E-value=0.0081  Score=61.47  Aligned_cols=69  Identities=16%  Similarity=0.182  Sum_probs=54.0

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCC
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSD  144 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~  144 (413)
                      |++.+.+.+. .. ++.++|+-+|.|.-|.++....  .+|+|+|.++.|++.|+++.+.  ..++++++++..+
T Consensus       195 l~~~v~~~~~-~~-~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        195 MLEWALDATK-GS-KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             HHHHHHHHhh-cC-CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            6677777664 33 3579999999999999777664  4899999999999999887543  2378899888654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.60  E-value=0.0088  Score=57.72  Aligned_cols=48  Identities=25%  Similarity=0.310  Sum_probs=38.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      ..++..++|..+|.|..+.++.. .+..+|+|+|+|+.+++.|+++.+.
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~  164 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAK-LGAKKVLAVDIDPQAVEAARENAEL  164 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHH
Confidence            35788999999999987776554 4445799999999999999887543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=96.57  E-value=0.0093  Score=55.58  Aligned_cols=68  Identities=15%  Similarity=0.147  Sum_probs=54.2

Q ss_pred             EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .++|..+|.|+.+..+++.+|++.|+|+|.++++++.++++.+.  . +++.++..++....  +      .+.+|.|+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~------~~~fD~I~   72 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F------PDTYDLVF   72 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C------CCCCCEee
Confidence            57999999999999999998889999999999999999887643  2 37888888774431  1      13578777

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.57  E-value=0.008  Score=58.53  Aligned_cols=82  Identities=21%  Similarity=0.320  Sum_probs=68.5

Q ss_pred             hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY  139 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~  139 (413)
                      ..|+||+   |-+.+.+++.+. +.++..+||.--|.|--|.+|++..  .+|++++.|+...+.-+++....+++++++
T Consensus         6 k~~gQnFL~~~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~   82 (262)
T PF00398_consen    6 KSLGQNFLVDPNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVIN   82 (262)
T ss_dssp             CGCTSSEEEHHHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEE
T ss_pred             CCCCcCeeCCHHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeee
Confidence            4567776   457788889887 8889999999999999999999987  789999999999988877765556999999


Q ss_pred             cCCCChHH
Q psy7191         140 GKFSDLPN  147 (413)
Q Consensus       140 ~nFs~l~~  147 (413)
                      ++|-.++.
T Consensus        83 ~D~l~~~~   90 (262)
T PF00398_consen   83 GDFLKWDL   90 (262)
T ss_dssp             S-TTTSCG
T ss_pred             cchhcccc
Confidence            99987653

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.56  E-value=0.011  Score=60.63  Aligned_cols=88  Identities=19%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      .+.+.+++.+.-..++..++|..+|.|.-+..+++..+...|+|+|.++.+++.|+++.. ..++.+++++..++.    
T Consensus        99 ~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp----  173 (340)
T PLN02490         99 DMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP----  173 (340)
T ss_pred             HHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC----
Confidence            344455555431246789999999999988888888877899999999999999987643 246777777765432    


Q ss_pred             hcCCCCCCccEEEEcC
Q psy7191         151 NMNNNFNSIDGIIMDV  166 (413)
Q Consensus       151 ~~~~~~~~VDGILfDL  166 (413)
                         +..+.+|.|+...
T Consensus       174 ---~~~~sFDvVIs~~  186 (340)
T PLN02490        174 ---FPTDYADRYVSAG  186 (340)
T ss_pred             ---CCCCceeEEEEcC
Confidence               2234689888643

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.55  E-value=0.008  Score=60.65  Aligned_cols=80  Identities=19%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh--h-cCCCCeEEEecCCCChHHHHHh
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL--A-ANDPRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l--l-~~~~rv~~i~~nFs~l~~~L~~  151 (413)
                      .++..|. +.+++.++|..||.|.|+..+++..+ ..|+|+|.++.++..++..  . ....++.++.+++.+++.    
T Consensus       113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~----  186 (322)
T PRK15068        113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA----  186 (322)
T ss_pred             HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC----
Confidence            3344554 55688999999999999999998754 3699999999988764332  1 112378888888766532    


Q ss_pred             cCCCCCCccEEEE
Q psy7191         152 MNNNFNSIDGIIM  164 (413)
Q Consensus       152 ~~~~~~~VDGILf  164 (413)
                          .+.+|.|+.
T Consensus       187 ----~~~FD~V~s  195 (322)
T PRK15068        187 ----LKAFDTVFS  195 (322)
T ss_pred             ----cCCcCEEEE
Confidence                236898884

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.45  E-value=0.0061  Score=59.43  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=49.0

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK  141 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n  141 (413)
                      .+.+..+. +.+-..++|.-||.|.-|..|.++.|.+.|.|||-++++++.|++++   ++++|..++
T Consensus        20 ~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aD   83 (257)
T COG4106          20 RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEAD   83 (257)
T ss_pred             HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceeccc
Confidence            44444443 56678899999999977777777889999999999999999998775   334444443

>KOG2198|consensus

Probab=96.43  E-value=0.0068  Score=62.62  Aligned_cols=89  Identities=21%  Similarity=0.252  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC----CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC--hHHH-HHhc-CC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG----NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD--LPNI-LKNM-NN  154 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p----~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~--l~~~-L~~~-~~  154 (413)
                      .+|+..++|+|+..||.|.++|+.+-    .|.|+|=|.|+..+..-..-+...+.-.+...+|..  .+.. +... +.
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~  232 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK  232 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence            78999999999999999999999862    379999999999887754333332222222233321  1111 1111 12


Q ss_pred             CCCCccEEEEcCCCCcc
Q psy7191         155 NFNSIDGIIMDVGISDS  171 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~  171 (413)
                      ....+|-||.|-.||..
T Consensus       233 ~~~~fDrVLvDVPCS~D  249 (375)
T KOG2198|consen  233 EQLKFDRVLVDVPCSGD  249 (375)
T ss_pred             hhhhcceeEEecccCCC
Confidence            23469999999999864

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=96.39  E-value=0.0098  Score=60.32  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=55.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +.++..++|+.||+|..+..+.+  +++.|+|+|.++++++.|++....  . .++.++++++.++..       ..+.|
T Consensus       129 ~~~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~F  199 (322)
T PLN02396        129 PFEGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKF  199 (322)
T ss_pred             CCCCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCC
Confidence            44677999999999999887764  467999999999999999875432  1 278888888755431       12368


Q ss_pred             cEEEE
Q psy7191         160 DGIIM  164 (413)
Q Consensus       160 DGILf  164 (413)
                      |.|+.
T Consensus       200 D~Vi~  204 (322)
T PLN02396        200 DAVLS  204 (322)
T ss_pred             CEEEE
Confidence            99885

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.35  E-value=0.013  Score=59.84  Aligned_cols=71  Identities=14%  Similarity=0.196  Sum_probs=56.0

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCC
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSD  144 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~  144 (413)
                      ..|++.+++.+. ..+ +.++|.-+|.|.-|.++....  .+|+|+|.++.|++.|+++.+..  .++.+++++..+
T Consensus       184 ~~l~~~v~~~~~-~~~-~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       184 IKMLEWACEVTQ-GSK-GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHHhh-cCC-CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            466778888774 333 469999999999999777665  48999999999999998876432  378899888754

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=96.34  E-value=0.014  Score=57.39  Aligned_cols=100  Identities=16%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-------CCCEEEEEeCCHHHHHHHHhhh--cCC--CCeEE
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-------GNVKVICLDRDKESFEKAKTLA--AND--PRLVP  137 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-------p~g~Via~DrD~~Al~~Ak~ll--~~~--~rv~~  137 (413)
                      .|.-+-..+-.+..++++..++|-|||.||--.+..+.+       +...++|+|+|+.++..|+-++  ...  ....+
T Consensus        30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i  109 (311)
T PF02384_consen   30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI  109 (311)
T ss_dssp             --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred             hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence            344333333333337788899999999999888887743       6789999999999999887543  221  13456


Q ss_pred             EecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCc
Q psy7191         138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQA  173 (413)
Q Consensus       138 i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Ql  173 (413)
                      .+++.-.-+...     ....+|.||.+..++..++
T Consensus       110 ~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~  140 (311)
T PF02384_consen  110 IQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEW  140 (311)
T ss_dssp             EES-TTTSHSCT-----ST--EEEEEEE--CTCES-
T ss_pred             cccccccccccc-----cccccccccCCCCcccccc
Confidence            666532211111     1246999999999987754

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.29  E-value=0.018  Score=60.02  Aligned_cols=80  Identities=16%  Similarity=0.190  Sum_probs=56.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC--CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP--RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~--rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +++.++|+.+|.||-+.+.+.. +..+|+++|+|+.|++.|+++++.  .+  ++++++++..   +++.++......+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~---~~l~~~~~~~~~fD  295 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF---KLLRTYRDRGEKFD  295 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH---HHHHHHHhcCCCCC
Confidence            5789999999999977655432 345999999999999999886643  32  7889988753   33332211113699


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|++|-.+
T Consensus       296 lVilDPP~  303 (396)
T PRK15128        296 VIVMDPPK  303 (396)
T ss_pred             EEEECCCC
Confidence            99965554

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.28  E-value=0.00044  Score=56.34  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=44.2

Q ss_pred             EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191          90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        90 VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      +|.-+|.|.-+..|++.+|.++++|+|+++.+++.+++++....  .+..+.....++....   .  .+.+|.|++-
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYD---P--PESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CC---C------SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcc---c--ccccceehhh
Confidence            68899999999999999999999999999999988877665433  3333333333221111   0  1368988854

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=96.25  E-value=0.025  Score=53.15  Aligned_cols=89  Identities=13%  Similarity=0.092  Sum_probs=62.2

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN  147 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~  147 (413)
                      .|..++-+...+. +.++..++|..+|.|..+..+++.  .++++++|.++.+++.++++..... ++.++..++..+. 
T Consensus        33 ~~~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-  108 (233)
T PRK05134         33 NPLRLNYIREHAG-GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELA-  108 (233)
T ss_pred             hHHHHHHHHHhcc-CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhh-
Confidence            3444555555554 567889999999999988888765  4689999999999999887654333 5677766655442 


Q ss_pred             HHHhcCCCCCCccEEEEcC
Q psy7191         148 ILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDL  166 (413)
                        ...   .+.+|.|++..
T Consensus       109 --~~~---~~~fD~Ii~~~  122 (233)
T PRK05134        109 --AEH---PGQFDVVTCME  122 (233)
T ss_pred             --hhc---CCCccEEEEhh
Confidence              211   14699998753

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.25  E-value=0.024  Score=53.01  Aligned_cols=82  Identities=15%  Similarity=0.050  Sum_probs=59.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ++..++|+.+|.|.=+...+.+.. .+|+++|.|+.|++.++++++.  .. ++++++++...   ++....-....+|.
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~---~l~~~~~~~~~~dv  124 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR---ALKFLAKKPTFDNV  124 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH---HHHHhhccCCCceE
Confidence            578999999999988888888743 4899999999999998876543  33 78888887632   23221101123789


Q ss_pred             EEEcCCCCc
Q psy7191         162 IIMDVGISD  170 (413)
Q Consensus       162 ILfDLGvSS  170 (413)
                      |++|=.|..
T Consensus       125 v~~DPPy~~  133 (189)
T TIGR00095       125 IYLDPPFFN  133 (189)
T ss_pred             EEECcCCCC
Confidence            998888754

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=96.18  E-value=0.015  Score=53.61  Aligned_cols=80  Identities=15%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ++++.+.+.   ++..++|..+|.|.++..+.+.. ...++|+|.++++++.+++.     ++.++++++.+.   +.. 
T Consensus         4 ~~~i~~~i~---~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~---l~~-   70 (194)
T TIGR02081         4 LESILNLIP---PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEG---LEA-   70 (194)
T ss_pred             HHHHHHhcC---CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhc---ccc-
Confidence            456666653   67799999999999988887653 45789999999999887542     356677665431   111 


Q ss_pred             CCCCCCccEEEEcC
Q psy7191         153 NNNFNSIDGIIMDV  166 (413)
Q Consensus       153 ~~~~~~VDGILfDL  166 (413)
                       ...+.+|.|+...
T Consensus        71 -~~~~sfD~Vi~~~   83 (194)
T TIGR02081        71 -FPDKSFDYVILSQ   83 (194)
T ss_pred             -cCCCCcCEEEEhh
Confidence             1224689998653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00452 methyltransferase, putative

Probab=96.14  E-value=0.024  Score=57.44  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh---hhcCCCCeEEEecCCCChHHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT---LAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~---ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      +.++..+. +.+++.++|..||+|.++..++...+ ..|+|+|.++.++..++.   ......++.+...++.++..   
T Consensus       111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---  185 (314)
T TIGR00452       111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---  185 (314)
T ss_pred             HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---
Confidence            44566664 66789999999999999999887644 479999999998875432   22222477777777655431   


Q ss_pred             hcCCCCCCccEEEE
Q psy7191         151 NMNNNFNSIDGIIM  164 (413)
Q Consensus       151 ~~~~~~~~VDGILf  164 (413)
                           ...+|.|+.
T Consensus       186 -----~~~FD~V~s  194 (314)
T TIGR00452       186 -----LYAFDTVFS  194 (314)
T ss_pred             -----CCCcCEEEE
Confidence                 125888874

Known examples to date are restricted to the proteobacteria.

>KOG0820|consensus

Probab=96.10  E-value=0.027  Score=56.59  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=77.7

Q ss_pred             hhhccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CC
Q psy7191          61 SEDIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PR  134 (413)
Q Consensus        61 ~~n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~r  134 (413)
                      .+-..++||   |-.++.+++.-. +++.++++.|-=|+|.=|..+||..  .+|+|+..||.+++.-+++.+.-   ++
T Consensus        32 fnkd~GQHilkNp~v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~k  108 (315)
T KOG0820|consen   32 FNKDFGQHILKNPLVIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGK  108 (315)
T ss_pred             cccccchhhhcCHHHHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccce
Confidence            344566665   777777777775 8999999999999999999999984  58999999999999887776653   38


Q ss_pred             eEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       135 v~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +.+++++|=..+       ++  .+|+++.||.|
T Consensus       109 LqV~~gD~lK~d-------~P--~fd~cVsNlPy  133 (315)
T KOG0820|consen  109 LQVLHGDFLKTD-------LP--RFDGCVSNLPY  133 (315)
T ss_pred             eeEEecccccCC-------Cc--ccceeeccCCc
Confidence            999999985432       22  58999998887

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.09  E-value=0.016  Score=59.44  Aligned_cols=97  Identities=24%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCC-CeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDP-RLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~-rv~~i~~nFs~l~  146 (413)
                      |.|..|=.-.+....+|.+++|+=+|-|..|-.++.+- ..+|||+|+.|.|++..++++.  ... ++..++++-.++.
T Consensus       173 prl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~  251 (341)
T COG2520         173 PRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA  251 (341)
T ss_pred             CCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh
Confidence            44444433333325679999999999999999998764 3349999999999999888654  233 6889999877654


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCCccCcc
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGISDSQAN  174 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvSS~Qld  174 (413)
                      ..+       +.+|-|++.+-.|++++.
T Consensus       252 ~~~-------~~aDrIim~~p~~a~~fl  272 (341)
T COG2520         252 PEL-------GVADRIIMGLPKSAHEFL  272 (341)
T ss_pred             hcc-------ccCCEEEeCCCCcchhhH
Confidence            322       358999999999999876

>PHA03412 putative methyltransferase; Provisional

Probab=96.06  E-value=0.018  Score=56.55  Aligned_cols=115  Identities=11%  Similarity=0.167  Sum_probs=78.2

Q ss_pred             ccchhHHHHHHHHHhHHhhhhhccCCcc-ccch-HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc---CCCEEEEEe
Q psy7191          42 FTIEEEETLKKNLASLKRLSEDIYNKKY-PRTF-QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI---GNVKVICLD  116 (413)
Q Consensus        42 ~~~~~~e~~~~~~~sl~~~~~n~y~~H~-pvll-~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~---p~g~Via~D  116 (413)
                      ..-+++|-|-++|.+--...+.-+++.+ |.=+ ..++..   ...++.++|.++|.|.=+.+++++.   +...|+|+|
T Consensus         7 ~~~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVE   83 (241)
T PHA03412          7 LTYEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVE   83 (241)
T ss_pred             ccHHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEE
Confidence            3445667788888875444443333332 3222 222211   2246899999999999888888764   357999999


Q ss_pred             CCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         117 RDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       117 rD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                      +|+.|++.|+++.   .++.+++++|....  +      ..++|.|+-|=.|.-
T Consensus        84 ID~~Al~~Ar~n~---~~~~~~~~D~~~~~--~------~~~FDlIIsNPPY~~  126 (241)
T PHA03412         84 LNHTYYKLGKRIV---PEATWINADALTTE--F------DTLFDMAISNPPFGK  126 (241)
T ss_pred             CCHHHHHHHHhhc---cCCEEEEcchhccc--c------cCCccEEEECCCCCC
Confidence            9999999998764   35888888876432  1      136999998877743

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.05  E-value=0.025  Score=57.43  Aligned_cols=130  Identities=20%  Similarity=0.269  Sum_probs=87.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcC----CCEEEEEeCCHHHHHHHHhhhc--CCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIG----NVKVICLDRDKESFEKAKTLAA--NDP--RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p----~g~Via~DrD~~Al~~Ak~ll~--~~~--rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      .++..+||.-+|.|-||..||+.+.    ..+.+++|++.++++.+.+.+.  .++  .+..++++|.+.-.++......
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            3566899999999999999999873    2578999999999999877665  466  5556999999887777542111


Q ss_pred             CCCccEEEEcCCCCccCcc-CC-----CCc---cCCCCCCC----cccCCC----------CCCCHHHHHhcCCHHHHHH
Q psy7191         156 FNSIDGIIMDVGISDSQAN-ST-----RGF---KPDSNSLL----DMRMSQ----------EGITGYQVLSAIDEVSLAK  212 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~Qld-~~-----RGF---Sf~~dgPL----DMRMd~----------~~~tA~~vlN~~~e~eL~~  212 (413)
                       ... -++|=||-|---++ ++     |.|   .-..++-|    |+.-|+          +++||+-.+|-     |.+
T Consensus       155 -~~~-r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~-----L~~  227 (319)
T TIGR03439       155 -SRP-TTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNG-----LVH  227 (319)
T ss_pred             -CCc-cEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHH-----HHH
Confidence             112 36666887766666 33     333   22222223    776665          46777766664     445


Q ss_pred             HHHHcCCC
Q psy7191         213 ILKTYGEE  220 (413)
Q Consensus       213 I~~~YGEE  220 (413)
                      |=+..|.+
T Consensus       228 ~Nr~Lg~~  235 (319)
T TIGR03439       228 ANEILGSE  235 (319)
T ss_pred             HHHHhCcc
Confidence            55555644

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.05  E-value=0.011  Score=57.80  Aligned_cols=76  Identities=21%  Similarity=0.208  Sum_probs=41.7

Q ss_pred             CCCC--CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------CC-----CCeEEEecCCCChHHHH
Q psy7191          83 SSDD--VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------ND-----PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        83 ~~~~--~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------~~-----~rv~~i~~nFs~l~~~L  149 (413)
                      ++++  ..++|||+|-|.+|.-+. .+ +++|+++.++|-.....+.-++      ..     .|++++++++.+.   |
T Consensus        71 lk~~~~~~VLDaTaGLG~Da~vlA-~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~---L  145 (234)
T PF04445_consen   71 LKPGMRPSVLDATAGLGRDAFVLA-SL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY---L  145 (234)
T ss_dssp             -BTTB---EEETT-TTSHHHHHHH-HH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH---C
T ss_pred             CCCCCCCEEEECCCcchHHHHHHH-cc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH---H
Confidence            3444  489999999997666554 44 5799999999966544332111      11     2899999999874   3


Q ss_pred             HhcCCCCCCccEEEEcC
Q psy7191         150 KNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDL  166 (413)
                      ..   +...+|.|.||=
T Consensus       146 ~~---~~~s~DVVY~DP  159 (234)
T PF04445_consen  146 RQ---PDNSFDVVYFDP  159 (234)
T ss_dssp             CC---HSS--SEEEE--
T ss_pred             hh---cCCCCCEEEECC
Confidence            21   124799999773

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=96.01  E-value=0.015  Score=58.54  Aligned_cols=72  Identities=22%  Similarity=0.225  Sum_probs=48.3

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|..+|.|  -.+|+... ...+|+|+|+||.|++.|+++.+.  .. ++.+.  ...+.         ...+
T Consensus       159 ~~~g~~vLDvG~GSG--ILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~---------~~~~  225 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSG--ILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL---------VEGK  225 (295)
T ss_dssp             SSTTSEEEEES-TTS--HHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT---------CCS-
T ss_pred             ccCCCEEEEeCCcHH--HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc---------cccc
Confidence            467889999999999  66666554 456899999999999999886542  22 55442  11111         1246


Q ss_pred             ccEEEEcCC
Q psy7191         159 IDGIIMDVG  167 (413)
Q Consensus       159 VDGILfDLG  167 (413)
                      +|.|++|+-
T Consensus       226 ~dlvvANI~  234 (295)
T PF06325_consen  226 FDLVVANIL  234 (295)
T ss_dssp             EEEEEEES-
T ss_pred             CCEEEECCC
Confidence            899988874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.95  E-value=0.013  Score=59.09  Aligned_cols=76  Identities=24%  Similarity=0.239  Sum_probs=48.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcCCCCeEE-EecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAANDPRLVP-VYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~-i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .+++..++|.-+|.|=  .+|... +.-.+|+|+|+||.|++.|+++... +.+.. ++...-.......     .+++|
T Consensus       160 ~~~g~~vlDvGcGSGI--LaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~~~~~~~~-----~~~~D  231 (300)
T COG2264         160 LKKGKTVLDVGCGSGI--LAIAAAKLGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGFLLLEVPE-----NGPFD  231 (300)
T ss_pred             hcCCCEEEEecCChhH--HHHHHHHcCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccccchhhcc-----cCccc
Confidence            4678999999999994  444443 3446899999999999999886543 22331 1222222222211     13688


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|+.|+
T Consensus       232 vIVANI  237 (300)
T COG2264         232 VIVANI  237 (300)
T ss_pred             EEEehh
Confidence            888876

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=95.95  E-value=0.048  Score=55.53  Aligned_cols=81  Identities=11%  Similarity=0.107  Sum_probs=58.6

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---C-CeEEEec-CCCChHHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---P-RLVPVYG-KFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~-rv~~i~~-nFs~l~~~L~~~~~~~~~V  159 (413)
                      ++..++|..+|.|+=...+..+.++.+++|+|+|+.|++.|++..+..   . ++.+++. +-.++..-+.   ...+.+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~---~~~~~f  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII---HKNERF  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc---ccCCce
Confidence            457899999999987777777778889999999999999999876543   2 7777642 2222221111   112469


Q ss_pred             cEEEEcCCC
Q psy7191         160 DGIIMDVGI  168 (413)
Q Consensus       160 DGILfDLGv  168 (413)
                      |.|+.|-.|
T Consensus       191 DlivcNPPf  199 (321)
T PRK11727        191 DATLCNPPF  199 (321)
T ss_pred             EEEEeCCCC
Confidence            999988888

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.91  E-value=0.022  Score=54.26  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCCh-HHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDL-PNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l-~~~L~~~~~~~~~V  159 (413)
                      ....++....|.|.=|..|++.+| +++|+.+|.|++..+.|++.++..  . +++++.++..+. +++..+..  .+.+
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~--~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGE--EGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTT--TTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccC--CCce
Confidence            457899999999977788887786 599999999999999999876543  3 999999876553 33333221  2479


Q ss_pred             cEEEEcCCCCc
Q psy7191         160 DGIIMDVGISD  170 (413)
Q Consensus       160 DGILfDLGvSS  170 (413)
                      |.|++|..=+.
T Consensus       123 D~VFiDa~K~~  133 (205)
T PF01596_consen  123 DFVFIDADKRN  133 (205)
T ss_dssp             EEEEEESTGGG
T ss_pred             eEEEEcccccc
Confidence            99998876543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.86  E-value=0.0059  Score=55.46  Aligned_cols=72  Identities=14%  Similarity=0.269  Sum_probs=48.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC------hHHHHHhcCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD------LPNILKNMNNN  155 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~------l~~~L~~~~~~  155 (413)
                      +.++..++|.+++.||-|..++++. +.++|+|+|.-+.         ...+.+..+++++-+      +.+.+.+   .
T Consensus        21 ~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~---~   88 (181)
T PF01728_consen   21 PGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPE---S   88 (181)
T ss_dssp             TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGT---T
T ss_pred             cccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccc---c
Confidence            3355899999999999999999998 6789999999977         112356666666543      2222221   1


Q ss_pred             CCCccEEEEcC
Q psy7191         156 FNSIDGIIMDV  166 (413)
Q Consensus       156 ~~~VDGILfDL  166 (413)
                      ...+|.|+-|.
T Consensus        89 ~~~~dlv~~D~   99 (181)
T PF01728_consen   89 GEKFDLVLSDM   99 (181)
T ss_dssp             TCSESEEEE--
T ss_pred             ccCcceecccc
Confidence            14799999888

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=95.83  E-value=0.053  Score=52.60  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeE-EEecCCCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLV-PVYGKFSD  144 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~-~i~~nFs~  144 (413)
                      |.++++.+....++.+++|..+|+||.|..+++. +-.+|+|+|.++..+..  + +...+++. +-..|+.+
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~--~-l~~~~~v~~~~~~ni~~  131 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE--K-LRQDERVKVLERTNIRY  131 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH--H-HhcCCCeeEeecCCccc
Confidence            3444444431236779999999999999999986 44689999999987765  2 22234554 34445553

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=95.80  E-value=0.017  Score=58.85  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             hHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh
Q psy7191          56 SLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA  129 (413)
Q Consensus        56 sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll  129 (413)
                      .|.+.+|-+    ..||+++.+..+....++..++|.+||-||+...-... .-..++|+|+++++|+.|+++.
T Consensus        37 ~lR~fNNwv----Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry  105 (331)
T PF03291_consen   37 HLRNFNNWV----KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERY  105 (331)
T ss_dssp             HHHHHHHHH----HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHhHHH----HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHH
Confidence            355555432    47888888887753447889999999999999988765 3468999999999999998875

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=95.79  E-value=0.025  Score=48.78  Aligned_cols=57  Identities=16%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCC
Q psy7191          88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSD  144 (413)
Q Consensus        88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~  144 (413)
                      +++|+.+|.|-+|..++...|.+++++||.||.+++.+++..+.  .+++++++...++
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            58999999999999999888888999999999999998776543  2367777665543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG3420|consensus

Probab=95.75  E-value=0.011  Score=54.68  Aligned_cols=104  Identities=19%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD  144 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~  144 (413)
                      .|+-+-.=++|+.--.--.|..+.|..+|.|--+  +.-..| +-.|+|||+||+|++...++.+.+. ++.+++++.-.
T Consensus        30 p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdild  107 (185)
T KOG3420|consen   30 PHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILD  107 (185)
T ss_pred             HHHHHHHHHHHHhhhccccCcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccc
Confidence            3444433344443321235789999999999555  333444 4688999999999999988877776 77777777655


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCCCCccCccCCCCccCCCCCCCcccC
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRM  191 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld~~RGFSf~~dgPLDMRM  191 (413)
                      +.  ++     .+.+|-+++         +|.  |--+++| .|||+
T Consensus       108 le--~~-----~g~fDtavi---------Npp--FGTk~~~-aDm~f  135 (185)
T KOG3420|consen  108 LE--LK-----GGIFDTAVI---------NPP--FGTKKKG-ADMEF  135 (185)
T ss_pred             hh--cc-----CCeEeeEEe---------cCC--CCccccc-ccHHH
Confidence            42  11     124666663         422  4445566 79985

>KOG2915|consensus

Probab=95.75  E-value=0.035  Score=55.80  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=69.9

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~  148 (413)
                      ..-++..|. +.||.+++.+--|.|+-|.+|+... |.|+||.||.+.+.-+.|.+-...  .+ +++++|.+-......
T Consensus        94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~  172 (314)
T KOG2915|consen   94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL  172 (314)
T ss_pred             HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence            455677786 9999999999999999999999987 889999999998877777653332  23 888888776554333


Q ss_pred             HHhcCCCCCCccEEEEcCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+     ...+|+|.+||.-
T Consensus       173 ~k-----s~~aDaVFLDlPa  187 (314)
T KOG2915|consen  173 IK-----SLKADAVFLDLPA  187 (314)
T ss_pred             cc-----ccccceEEEcCCC
Confidence            32     2469999999875

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.68  E-value=0.041  Score=52.85  Aligned_cols=70  Identities=13%  Similarity=0.286  Sum_probs=53.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh---HHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL---PNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l---~~~L~~~~~~~~~  158 (413)
                      .+++..+||..+-.||+|+...++. +.++|+|+|++|-..         .+.|.+++++|.+-   .++...++-  ..
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~~~V~~iq~d~~~~~~~~~l~~~l~~--~~  111 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------IPGVIFLQGDITDEDTLEKLLEALGG--AP  111 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------CCCceEEeeeccCccHHHHHHHHcCC--CC
Confidence            4678999999999999999999998 468899999998643         34699999999763   344444432  23


Q ss_pred             ccEEE
Q psy7191         159 IDGII  163 (413)
Q Consensus       159 VDGIL  163 (413)
                      +|.|+
T Consensus       112 ~DvV~  116 (205)
T COG0293         112 VDVVL  116 (205)
T ss_pred             cceEE
Confidence            67777

>TIGR00417 speE spermidine synthase

Probab=95.68  E-value=0.082  Score=51.75  Aligned_cols=76  Identities=25%  Similarity=0.278  Sum_probs=57.6

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      ...++|..+|.|+-+..+++..+..++.++|+|+++++.+++.+..      .++++++.++.   .+++...   .+.+
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~---~~~l~~~---~~~y  146 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG---FKFLADT---ENTF  146 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch---HHHHHhC---CCCc
Confidence            3488999999999998998876567899999999999999876532      24788877443   3455543   2479


Q ss_pred             cEEEEcCC
Q psy7191         160 DGIIMDVG  167 (413)
Q Consensus       160 DGILfDLG  167 (413)
                      |.|+.|..
T Consensus       147 DvIi~D~~  154 (270)
T TIGR00417       147 DVIIVDST  154 (270)
T ss_pred             cEEEEeCC
Confidence            99998853

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2904|consensus

Probab=95.64  E-value=0.042  Score=55.34  Aligned_cols=174  Identities=17%  Similarity=0.175  Sum_probs=108.3

Q ss_pred             HHHHHhHHhhhhhccCCcccc-----------------------------chHhHHhccCC--CCCCCEEEEEecCCchh
Q psy7191          51 KKNLASLKRLSEDIYNKKYPR-----------------------------TFQTSASGLND--SSDDVTMIDMTYGDGNH   99 (413)
Q Consensus        51 ~~~~~sl~~~~~n~y~~H~pv-----------------------------ll~evi~~L~~--~~~~~i~VDaTlG~GGH   99 (413)
                      -.|++++.++|.--|. |+|+                             .++-|++.+++  .-.+..++|..+|.|--
T Consensus        84 ~~ql~~i~~~~~~R~~-r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaI  162 (328)
T KOG2904|consen   84 ILQLESIRWACLQRYK-RMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAI  162 (328)
T ss_pred             hhHHHHHHHHHHHHHh-cCChhheeccCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHH
Confidence            3467888888888887 7774                             12345555532  11245899999999999


Q ss_pred             HHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCcc----C
Q psy7191         100 TRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDS----Q  172 (413)
Q Consensus       100 S~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~----Q  172 (413)
                      |..+|..+|+++++|+|+.+.|+..|.++.+.+   +++.++|-.+.. + +........++.|+++=|-.|=..    |
T Consensus       163 slsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~-d-~~~~~~l~~~~~dllvsNPPYI~~dD~~~  240 (328)
T KOG2904|consen  163 SLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES-D-ASDEHPLLEGKIDLLVSNPPYIRKDDNRQ  240 (328)
T ss_pred             HHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc-c-cccccccccCceeEEecCCCcccccchhh
Confidence            999999999999999999999999998766543   488877654432 1 111222223579999966666222    2


Q ss_pred             ccCCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHH-------HHHHcCCCchHHHHHHHHHHHH
Q psy7191         173 ANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAK-------ILKTYGEEKRSRQIARAIIETR  234 (413)
Q Consensus       173 ld~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~-------I~~~YGEE~~a~rIA~aIv~~R  234 (413)
                      ++|+=+ +|..---||     .+....+++-++..-. .+       ++.+|++++....+.+.|+..+
T Consensus       241 l~~eV~-~yEp~lALd-----Gg~eG~~~~~~~~~~a-~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~  302 (328)
T KOG2904|consen  241 LKPEVR-LYEPKLALD-----GGLEGYDNLVHYWLLA-TRMLQPGGFEQLELVERKEHSYLVRIWMISL  302 (328)
T ss_pred             cCchhe-ecCchhhhc-----cccchhHHHHHHHHhh-HhhcccCCeEEEEecccccCcHHHHHHHHhc
Confidence            221111 111101111     3455556555554322 12       2345667777778888888777

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.57  E-value=0.025  Score=60.35  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=65.0

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCC--------CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCC
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGN--------VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~--------g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ...++|-+||.|+-..++++.++.        ..++|+|+|+.++..++.++..+.  .+.+.+.+|-.-...... . .
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~-~-~  109 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIE-S-Y  109 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccc-c-c
Confidence            358999999999999999987741        468999999999999988765543  455565554321111111 1 1


Q ss_pred             CCCccEEEEcCCCCccCcc-CCC
Q psy7191         156 FNSIDGIIMDVGISDSQAN-STR  177 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~Qld-~~R  177 (413)
                      .+.+|.|+-|=.|..++.+ .++
T Consensus       110 ~~~fD~IIgNPPy~~~k~~~~~~  132 (524)
T TIGR02987       110 LDLFDIVITNPPYGRLKPDKKEL  132 (524)
T ss_pred             cCcccEEEeCCCccccCcchhhh
Confidence            2469999999999999887 554

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=95.50  E-value=0.054  Score=51.64  Aligned_cols=76  Identities=11%  Similarity=0.077  Sum_probs=53.3

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh--hc------------CCC
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL--AA------------NDP  133 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l--l~------------~~~  133 (413)
                      .-+-.|.+.++.+. ..+++.++|.-||.|-++..+.++  .-.|+|+|+.+.|++.+.+.  +.            ...
T Consensus        18 ~p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~   94 (213)
T TIGR03840        18 EVNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAG   94 (213)
T ss_pred             CCCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecC
Confidence            34445555666653 457789999999999999888765  45899999999999985321  10            012


Q ss_pred             CeEEEecCCCChH
Q psy7191         134 RLVPVYGKFSDLP  146 (413)
Q Consensus       134 rv~~i~~nFs~l~  146 (413)
                      ++++++++|-+++
T Consensus        95 ~v~~~~~D~~~~~  107 (213)
T TIGR03840        95 NIEIFCGDFFALT  107 (213)
T ss_pred             ceEEEEccCCCCC
Confidence            5777777776653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=95.49  E-value=0.083  Score=52.45  Aligned_cols=95  Identities=15%  Similarity=0.197  Sum_probs=75.8

Q ss_pred             cCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC
Q psy7191          65 YNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK  141 (413)
Q Consensus        65 y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n  141 (413)
                      ++||+   +..++.+++... +.+++.++..--|.|+=|..++++.  .+|+|+.+|+..++.-++....+.++++++++
T Consensus         8 ~GQnFL~d~~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D   84 (259)
T COG0030           8 LGQNFLIDKNVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFAPYDNLTVINGD   84 (259)
T ss_pred             cccccccCHHHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcccccceEEEeCc
Confidence            44544   445888899997 8889999999999999999999986  46999999999999987776555699999999


Q ss_pred             CCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +-.++  +.++.    ..+.|+.||.|
T Consensus        85 aLk~d--~~~l~----~~~~vVaNlPY  105 (259)
T COG0030          85 ALKFD--FPSLA----QPYKVVANLPY  105 (259)
T ss_pred             hhcCc--chhhc----CCCEEEEcCCC
Confidence            86553  21110    36889999998

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.48  E-value=0.053  Score=56.29  Aligned_cols=75  Identities=15%  Similarity=0.027  Sum_probs=56.6

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++..++|+-+|.|.-+..++...+..+|+++|+++.|++.++++++.  ...+.+++++..   .++..    ...+|.|
T Consensus        57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~---~~l~~----~~~fD~V  129 (382)
T PRK04338         57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDAN---ALLHE----ERKFDVV  129 (382)
T ss_pred             CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHH---HHHhh----cCCCCEE
Confidence            34689999999999998887776655899999999999999887643  235667776663   33432    1359999


Q ss_pred             EEcC
Q psy7191         163 IMDV  166 (413)
Q Consensus       163 LfDL  166 (413)
                      ++|-
T Consensus       130 ~lDP  133 (382)
T PRK04338        130 DIDP  133 (382)
T ss_pred             EECC
Confidence            9994

>PRK11524 putative methyltransferase; Provisional

Probab=95.46  E-value=0.027  Score=55.61  Aligned_cols=55  Identities=13%  Similarity=0.028  Sum_probs=44.1

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      |++.+|...  ..+|++++|.-+|.|  |+++....-+-+-||||+|++.++.|+++++
T Consensus       197 L~erlI~~~--S~~GD~VLDPF~GSG--TT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        197 LLKRIILAS--SNPGDIVLDPFAGSF--TTGAVAKASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHHHHHHHh--CCCCCEEEECCCCCc--HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence            445555555  478999999999999  7877666545678999999999999998875

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=95.41  E-value=0.063  Score=59.68  Aligned_cols=77  Identities=14%  Similarity=0.058  Sum_probs=59.5

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C--CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D--PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~--~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +++.++|+.+|.|+-|...+.. +..+|+++|+++.|++.|+++++.  .  .++++++++.-   +++++.+   ..+|
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~---~~l~~~~---~~fD  610 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL---AWLKEAR---EQFD  610 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH---HHHHHcC---CCcC
Confidence            5789999999999999998875 335799999999999999987643  3  27889988753   3454432   3699


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|++|-.+
T Consensus       611 lIilDPP~  618 (702)
T PRK11783        611 LIFIDPPT  618 (702)
T ss_pred             EEEECCCC
Confidence            99977554

>PLN02366 spermidine synthase

Probab=95.36  E-value=0.066  Score=54.09  Aligned_cols=76  Identities=25%  Similarity=0.317  Sum_probs=58.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFN  157 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~  157 (413)
                      +.+.++|.-+|.||=...+++. |. .+|..+|+|+.+++.|++.+..      .+|++++.++...   ++++.  +.+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~---~l~~~--~~~  164 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE---FLKNA--PEG  164 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH---HHhhc--cCC
Confidence            3567899999999988888865 54 6899999999999999886532      2499999877543   44432  124


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|+.|+
T Consensus       165 ~yDvIi~D~  173 (308)
T PLN02366        165 TYDAIIVDS  173 (308)
T ss_pred             CCCEEEEcC
Confidence            699999886

>PRK01581 speE spermidine synthase; Validated

Probab=95.35  E-value=0.046  Score=56.80  Aligned_cols=75  Identities=21%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh--hc-----C--CCCeEEEecCCCChHHHHHhcCCCC
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL--AA-----N--DPRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l--l~-----~--~~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      ...+++.-+|.|+-...+|+..+..+|.++|+|+++++.|++.  +.     .  .+|++++.++-.   +++...   .
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~---~fL~~~---~  224 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK---EFLSSP---S  224 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH---HHHHhc---C
Confidence            3588999999999888888764557999999999999999862  11     1  248998877654   455443   2


Q ss_pred             CCccEEEEcC
Q psy7191         157 NSIDGIIMDV  166 (413)
Q Consensus       157 ~~VDGILfDL  166 (413)
                      +.+|.|++|+
T Consensus       225 ~~YDVIIvDl  234 (374)
T PRK01581        225 SLYDVIIIDF  234 (374)
T ss_pred             CCccEEEEcC
Confidence            4699999995

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.35  E-value=0.094  Score=50.19  Aligned_cols=74  Identities=9%  Similarity=0.041  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHH
Q psy7191          47 EETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAK  126 (413)
Q Consensus        47 ~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak  126 (413)
                      .+-|+..|++=.   .........-+|.+.++.+. +.+++.++|.-||.|-++..++++  +..|+|+|..+.|++.+.
T Consensus         3 ~~~Wd~rw~~~~---~~~~~~~p~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~   76 (218)
T PRK13255          3 PDFWHEKWAENQ---IGFHQEEVNPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFF   76 (218)
T ss_pred             HhHHHHHHcCCC---CCCCCCCCCHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHH
Confidence            456777776621   01112444455556666564 557789999999999888888764  468999999999999863

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=95.16  E-value=0.09  Score=50.46  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      -+..++.-+|.|--|..|..++  .+|.++|+.+.|+++|+++++..++|.+++..+.+.   .     +.+.||.|+
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~---~-----P~~~FDLIV  111 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF---W-----PEGRFDLIV  111 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT-----------SS-EEEEE
T ss_pred             cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC---C-----CCCCeeEEE
Confidence            3578999999998888887776  489999999999999999998878999999988653   2     235788887

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>KOG2360|consensus

Probab=95.13  E-value=0.024  Score=59.04  Aligned_cols=83  Identities=19%  Similarity=0.250  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +.+|+.++|.++-.|-.|.++..-.+ .+++||||+|++-.+.-++.+..  ...+..+.++|-.. -.-..    ...|
T Consensus       211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~----~~~v  285 (413)
T KOG2360|consen  211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEK----FRDV  285 (413)
T ss_pred             CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCccc----ccce
Confidence            78899999999999999999988775 59999999999988875555432  23666778888775 12211    3468


Q ss_pred             cEEEEcCCCCc
Q psy7191         160 DGIIMDVGISD  170 (413)
Q Consensus       160 DGILfDLGvSS  170 (413)
                      ..||+|=|||-
T Consensus       286 ~~iL~DpscSg  296 (413)
T KOG2360|consen  286 TYILVDPSCSG  296 (413)
T ss_pred             eEEEeCCCCCC
Confidence            99999999964

>PRK03612 spermidine synthase; Provisional

Probab=95.07  E-value=0.063  Score=57.67  Aligned_cols=76  Identities=28%  Similarity=0.325  Sum_probs=58.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhh--hc-------CCCCeEEEecCCCChHHHHHhcCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTL--AA-------NDPRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~l--l~-------~~~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      +.+.++|.-+|.|+-+..+++. |. .+|.++|+|+++++.+++.  +.       ..+|+++++++..   +++...  
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~---~~l~~~--  370 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF---NWLRKL--  370 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH---HHHHhC--
Confidence            4568899999999999999974 55 7999999999999999872  21       1248999887654   455443  


Q ss_pred             CCCCccEEEEcCC
Q psy7191         155 NFNSIDGIIMDVG  167 (413)
Q Consensus       155 ~~~~VDGILfDLG  167 (413)
                       .+++|.|+.|+.
T Consensus       371 -~~~fDvIi~D~~  382 (521)
T PRK03612        371 -AEKFDVIIVDLP  382 (521)
T ss_pred             -CCCCCEEEEeCC
Confidence             247999999953

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=95.00  E-value=0.11  Score=52.69  Aligned_cols=78  Identities=15%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecC-CCChHHHHHhcC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGK-FSDLPNILKNMN  153 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~n-Fs~l~~~L~~~~  153 (413)
                      ++.|. ...++-++|..||+|-=+..+++..|..+|.-+|+|..|++.|++.++..  .+..++++| |+++.       
T Consensus       151 l~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~-------  222 (300)
T COG2813         151 LETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE-------  222 (300)
T ss_pred             HHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc-------
Confidence            34443 45567899999999999999999999999999999999999999877642  232445544 55442       


Q ss_pred             CCCCCccEEEEc
Q psy7191         154 NNFNSIDGIIMD  165 (413)
Q Consensus       154 ~~~~~VDGILfD  165 (413)
                         +++|.|+-|
T Consensus       223 ---~kfd~IisN  231 (300)
T COG2813         223 ---GKFDLIISN  231 (300)
T ss_pred             ---ccccEEEeC
Confidence               258888833

>PLN02672 methionine S-methyltransferase

Probab=95.00  E-value=0.076  Score=61.83  Aligned_cols=77  Identities=19%  Similarity=0.119  Sum_probs=60.5

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC------------------CCeEEEecCCCChHH
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND------------------PRLVPVYGKFSDLPN  147 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~------------------~rv~~i~~nFs~l~~  147 (413)
                      +..++|..+|.|-=+..+++..|.++|+|+|+++.|++.|+++.+..                  .|+++++++.-+.  
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~--  196 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY--  196 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh--
Confidence            45899999999999999999988889999999999999998765421                  2799999886432  


Q ss_pred             HHHhcCCCCCCccEEEEcCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGv  168 (413)
                       +...+   ..+|.|+-|-.|
T Consensus       197 -~~~~~---~~fDlIVSNPPY  213 (1082)
T PLN02672        197 -CRDNN---IELDRIVGCIPQ  213 (1082)
T ss_pred             -ccccC---CceEEEEECCCc
Confidence             22111   158999988887

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=94.97  E-value=0.059  Score=52.33  Aligned_cols=78  Identities=13%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      -++|+..||.|.|..++..+.|+.-.+|+++-...+..+.+.....  +++.+++.+-..+-.++.    +.+.+|+|.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~----~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI----PDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC----CCCCeeEEEE
Confidence            5999999999999999999999988999999999999886654432  378888887666555443    2347999987


Q ss_pred             cCCC
Q psy7191         165 DVGI  168 (413)
Q Consensus       165 DLGv  168 (413)
                      .+.-
T Consensus       126 ~FPD  129 (227)
T COG0220         126 NFPD  129 (227)
T ss_pred             ECCC
Confidence            6643

>KOG1663|consensus

Probab=94.87  E-value=0.15  Score=49.98  Aligned_cols=81  Identities=14%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC---CCCeEEEecCC-CChHHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN---DPRLVPVYGKF-SDLPNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~---~~rv~~i~~nF-s~l~~~L~~~~~~~~~V  159 (413)
                      ..+..||.-.=+|.-+.+....+| +|+|++||+|+++.+.+.+..+.   +.+++++++.- ..|++.+...+  .+.+
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~--~~tf  150 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGE--SGTF  150 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCC--CCce
Confidence            456788887777866777777777 59999999999999999775443   23899999985 45777777653  4579


Q ss_pred             cEEEEcCC
Q psy7191         160 DGIIMDVG  167 (413)
Q Consensus       160 DGILfDLG  167 (413)
                      |.+++|-=
T Consensus       151 DfaFvDad  158 (237)
T KOG1663|consen  151 DFAFVDAD  158 (237)
T ss_pred             eEEEEccc
Confidence            99998753

>KOG1540|consensus

Probab=94.87  E-value=0.16  Score=50.82  Aligned_cols=162  Identities=18%  Similarity=0.199  Sum_probs=107.0

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC------CEEEEEeCCHHHHHHHHhhhcC--C-C--CeEEEecCCCC
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN------VKVICLDRDKESFEKAKTLAAN--D-P--RLVPVYGKFSD  144 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~------g~Via~DrD~~Al~~Ak~ll~~--~-~--rv~~i~~nFs~  144 (413)
                      .++.|. +.++-.+||.+.|+|--+-.||++.++      .+|+.+|+.|.+|+.++++.+.  + .  ++..+.+|-.+
T Consensus        92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            366776 788889999999999888999998865      8999999999999998877532  2 2  69999988877


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCCCCccCccCCCCcc----CCCCCCCcccCCC-----CC-CCHHHHHhcCCHHHHHHHH
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFK----PDSNSLLDMRMSQ-----EG-ITGYQVLSAIDEVSLAKIL  214 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld~~RGFS----f~~dgPLDMRMd~-----~~-~tA~~vlN~~~e~eL~~I~  214 (413)
                      |+       ++...+|+.-+=+|+=.-- |++||..    -.+-|-   |+-.     .. .+-..+-+.|+..=|-.+=
T Consensus       171 Lp-------Fdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGG---rf~cLeFskv~~~~l~~fy~~ysf~VlpvlG  239 (296)
T KOG1540|consen  171 LP-------FDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGG---RFSCLEFSKVENEPLKWFYDQYSFDVLPVLG  239 (296)
T ss_pred             CC-------CCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCc---EEEEEEccccccHHHHHHHHhhhhhhhchhh
Confidence            65       3345788888877773210 1333321    122221   2211     12 3456666667666555554


Q ss_pred             HHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcC
Q psy7191         215 KTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSR  255 (413)
Q Consensus       215 ~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~  255 (413)
                      ..|-..+.+..+-.   +   ..+.+.+-.+|+.+|+++=.
T Consensus       240 ~~iagd~~sYqYLv---e---SI~rfp~qe~f~~miedaGF  274 (296)
T KOG1540|consen  240 EIIAGDRKSYQYLV---E---SIRRFPPQEEFASMIEDAGF  274 (296)
T ss_pred             HhhhhhHhhhhhHH---h---hhhcCCCHHHHHHHHHHcCC
Confidence            55555555555432   2   23356778899999998743

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=94.81  E-value=0.1  Score=49.78  Aligned_cols=98  Identities=20%  Similarity=0.224  Sum_probs=64.2

Q ss_pred             hhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-------CC
Q psy7191          60 LSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-------ND  132 (413)
Q Consensus        60 ~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-------~~  132 (413)
                      -.++.|++=-|-.+.++++.+. +.++++++|.-.|.|.=..+..-..+-.+.+||.+++...+.|+...+       .+
T Consensus        18 ~s~~~YGEi~~~~~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~   96 (205)
T PF08123_consen   18 FSSETYGEISPEFVSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHY   96 (205)
T ss_dssp             TCCCCGGGCHHHHHHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcceeecCHHHHHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999997 999999999999999543333322343569999999998888754221       12


Q ss_pred             ----CCeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191         133 ----PRLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       133 ----~rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD  165 (413)
                          .++.+++++|-+-+.   ++.       ..|.|++|
T Consensus        97 g~~~~~v~l~~gdfl~~~~~~~~~s-------~AdvVf~N  129 (205)
T PF08123_consen   97 GKRPGKVELIHGDFLDPDFVKDIWS-------DADVVFVN  129 (205)
T ss_dssp             TB---EEEEECS-TTTHHHHHHHGH-------C-SEEEE-
T ss_pred             hcccccceeeccCccccHhHhhhhc-------CCCEEEEe
Confidence                278899999987542   222       36777754

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=94.79  E-value=0.064  Score=57.49  Aligned_cols=80  Identities=16%  Similarity=0.140  Sum_probs=60.8

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ..+-++||..||.|+|..++....|+..++|+|+....+..+.+....  ..++.++..++..+..++     +.+.||.
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~-----~~~sv~~  420 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL-----PNNSLDG  420 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc-----CcccccE
Confidence            346799999999999999999999999999999999988887554332  347888877644443333     3356999


Q ss_pred             EEEcCCC
Q psy7191         162 IIMDVGI  168 (413)
Q Consensus       162 ILfDLGv  168 (413)
                      |.+.+.-
T Consensus       421 i~i~FPD  427 (506)
T PRK01544        421 IYILFPD  427 (506)
T ss_pred             EEEECCC
Confidence            9877643

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=94.70  E-value=0.15  Score=50.09  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=42.5

Q ss_pred             CccccchHhHHhccCC---CCCCCEEEEEecCCchh--HHHH--HHhcC-----CCEEEEEeCCHHHHHHHHhh
Q psy7191          67 KKYPRTFQTSASGLND---SSDDVTMIDMTYGDGNH--TRLI--LENIG-----NVKVICLDRDKESFEKAKTL  128 (413)
Q Consensus        67 ~H~pvll~evi~~L~~---~~~~~i~VDaTlG~GGH--S~aI--Le~~p-----~g~Via~DrD~~Al~~Ak~l  128 (413)
                      .|+..|.+.++..|..   ..++-.++|+.||+|..  |.+|  ++..+     +.+|+|+|+|+.|++.|++.
T Consensus        78 ~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~  151 (264)
T smart00138       78 KHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG  151 (264)
T ss_pred             HHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence            4555666666554421   22345899999999975  3343  34443     47999999999999999874

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=94.62  E-value=0.085  Score=49.29  Aligned_cols=82  Identities=15%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCC-CChHHHHHhcCCCCCCcc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKF-SDLPNILKNMNNNFNSID  160 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nF-s~l~~~L~~~~~~~~~VD  160 (413)
                      +|..++|+.+|.|.=...-|++- -.+|+.+|.|+.|+...+++++..+   ++.+++.+. ..+.+... .   ...+|
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-~---~~~fD  116 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-K---GEKFD  116 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH-C---TS-EE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc-c---CCCce
Confidence            68899999999998877777663 3589999999999999888766432   688888774 34433322 2   24799


Q ss_pred             EEEEcCCCCcc
Q psy7191         161 GIIMDVGISDS  171 (413)
Q Consensus       161 GILfDLGvSS~  171 (413)
                      .|++|=.|-..
T Consensus       117 iIflDPPY~~~  127 (183)
T PF03602_consen  117 IIFLDPPYAKG  127 (183)
T ss_dssp             EEEE--STTSC
T ss_pred             EEEECCCcccc
Confidence            99999888544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=94.50  E-value=0.22  Score=48.38  Aligned_cols=82  Identities=15%  Similarity=0.103  Sum_probs=58.8

Q ss_pred             CcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCH
Q psy7191          40 NKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDK  119 (413)
Q Consensus        40 ~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~  119 (413)
                      ||-.+++.+-|.+-|++=+   .........-+|.+-+..+. +.+++.+++--||.|-+...++++  +-.|+|+|..+
T Consensus         2 ~~~~~~~~~fW~~rw~~~~---~~f~~~~pnp~L~~~~~~l~-~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~   75 (226)
T PRK13256          2 NKLETNNNQYWLDRWQNDD---VGFCQESPNEFLVKHFSKLN-INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSE   75 (226)
T ss_pred             CccccCCHHHHHHHHhcCC---CCCccCCCCHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCH
Confidence            5677888888988887521   12223444445555556665 556789999999999877777765  34799999999


Q ss_pred             HHHHHHHh
Q psy7191         120 ESFEKAKT  127 (413)
Q Consensus       120 ~Al~~Ak~  127 (413)
                      .|++.+.+
T Consensus        76 ~Ai~~~~~   83 (226)
T PRK13256         76 KAVLSFFS   83 (226)
T ss_pred             HHHHHHHH
Confidence            99999754

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.44  E-value=0.24  Score=46.99  Aligned_cols=62  Identities=24%  Similarity=0.280  Sum_probs=50.0

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS  143 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs  143 (413)
                      ++.... ..+...+||.--|.|..+.+|++++|+.+++.+|. |.+++.+++    .+|++++-++|-
T Consensus        92 ~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f  153 (241)
T PF00891_consen   92 LLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFF  153 (241)
T ss_dssp             HHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TT
T ss_pred             hhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHH
Confidence            344443 56677999999999999999999999999999999 899988877    359999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG1541|consensus

Probab=94.24  E-value=0.066  Score=52.61  Aligned_cols=53  Identities=17%  Similarity=0.196  Sum_probs=41.9

Q ss_pred             chHhHHhccCCCCC--CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh
Q psy7191          72 TFQTSASGLNDSSD--DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT  127 (413)
Q Consensus        72 ll~evi~~L~~~~~--~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~  127 (413)
                      |.+-.++.|. ..+  .+.++|..||.| -|..+|+.- .-..+|+|+.|.+++.|.+
T Consensus        36 m~eRaLELLa-lp~~~~~~iLDIGCGsG-LSg~vL~~~-Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   36 MAERALELLA-LPGPKSGLILDIGCGSG-LSGSVLSDS-GHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             HHHHHHHHhh-CCCCCCcEEEEeccCCC-cchheeccC-CceEEeecCCHHHHHHHHH
Confidence            6667778775 444  679999999999 777777653 3456899999999999875

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.22  E-value=0.089  Score=47.98  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=38.6

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT  127 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~  127 (413)
                      -|++.+|...  ..+|++++|.-+|.|  |+++....-+-+-||+|++++..+.|++
T Consensus       179 ~l~~~lI~~~--t~~gdiVlDpF~GSG--TT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  179 ELIERLIKAS--TNPGDIVLDPFAGSG--TTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHHHHHHH--S-TT-EEEETT-TTT--HHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHhh--hccceeeehhhhccC--hHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            3556666665  578999999999999  7777666545678999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG3191|consensus

Probab=94.22  E-value=0.19  Score=48.06  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=59.7

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ....++++.-+|.|--|.++.+.. |+....+.|+.|.|++.+++-..... ++..++.++..        ++..++||.
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~--------~l~~~~VDv  113 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS--------GLRNESVDV  113 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh--------hhccCCccE
Confidence            336799999999999999998887 77888999999999999876443222 56677776532        222368999


Q ss_pred             EEEcCCC
Q psy7191         162 IIMDVGI  168 (413)
Q Consensus       162 ILfDLGv  168 (413)
                      ++|+=+|
T Consensus       114 LvfNPPY  120 (209)
T KOG3191|consen  114 LVFNPPY  120 (209)
T ss_pred             EEECCCc
Confidence            9999988

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=93.80  E-value=0.18  Score=44.57  Aligned_cols=48  Identities=25%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHh----cCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILEN----IGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~----~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      ..+...+||...|-|.=|..+...    .++.+|+|+|.++..++.+.++.+
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence            356789999999999545544441    477899999999999888876543

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=93.75  E-value=0.17  Score=52.17  Aligned_cols=85  Identities=22%  Similarity=0.221  Sum_probs=61.5

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEec-CCCChHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYG-KFSDLPNIL  149 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~-nFs~l~~~L  149 (413)
                      .-++-+|...++|+.++|==||+||-   +.+. +-++++||.|+|..+++-|+.+++.|.  .+.++.. +-.+++  |
T Consensus       186 AR~mVNLa~v~~G~~vlDPFcGTGgi---LiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l  260 (347)
T COG1041         186 ARAMVNLARVKRGELVLDPFCGTGGI---LIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--L  260 (347)
T ss_pred             HHHHHHHhccccCCEeecCcCCccHH---HHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC--C
Confidence            33444454488999999999999963   3333 357899999999999999999988774  5555555 555554  3


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                      .     .+.||+|+-|-.|
T Consensus       261 ~-----~~~vdaIatDPPY  274 (347)
T COG1041         261 R-----DNSVDAIATDPPY  274 (347)
T ss_pred             C-----CCccceEEecCCC
Confidence            2     2359999976655

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=93.67  E-value=0.21  Score=43.14  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=39.4

Q ss_pred             CccccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHH
Q psy7191          67 KKYPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEK  124 (413)
Q Consensus        67 ~H~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~  124 (413)
                      -|+...+.+.+..+.. ..+++.++|.-+|.|..+..+.+. + .+++|+|.++.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen    3 RHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G-FEVTGVDISPQMIEK   59 (161)
T ss_dssp             -GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T-SEEEEEESSHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C-CEEEEEECCHHHHhh
Confidence            3444444455554432 357889999999999877777443 3 399999999999976

...

>PLN02823 spermine synthase

Probab=93.53  E-value=0.26  Score=50.45  Aligned_cols=74  Identities=26%  Similarity=0.255  Sum_probs=57.0

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      ..++-+-.|.|+-...+|+..+..+|.++|+|++.++.+++.+..      .+|++++.++-.   .+|+..   .+++|
T Consensus       105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~---~~L~~~---~~~yD  178 (336)
T PLN02823        105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR---AELEKR---DEKFD  178 (336)
T ss_pred             CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH---HHHhhC---CCCcc
Confidence            456778888888888898865567899999999999999886532      248999887654   455443   24799


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|++|+
T Consensus       179 vIi~D~  184 (336)
T PLN02823        179 VIIGDL  184 (336)
T ss_pred             EEEecC
Confidence            999997

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=93.49  E-value=0.21  Score=55.69  Aligned_cols=54  Identities=19%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             CEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         110 VKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       110 g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+++|+|+|+.|++.|++++...  . ++.+.++++.++.....     .+.+|.|+.|-.|
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~-----~~~~d~IvtNPPY  313 (702)
T PRK11783        257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLP-----KGPTGLVISNPPY  313 (702)
T ss_pred             ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccc-----cCCCCEEEECCCC
Confidence            37999999999999999876643  2 68999999887642211     1358999999776

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.02  E-value=0.2  Score=52.34  Aligned_cols=77  Identities=23%  Similarity=0.196  Sum_probs=57.0

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc--CC--------------------------------C-------EEEEEeCCHHH
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI--GN--------------------------------V-------KVICLDRDKES  121 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~--p~--------------------------------g-------~Via~DrD~~A  121 (413)
                      .+++.-++|=+||.|  |-.|=..+  ++                                +       .+||+|+|+.+
T Consensus       189 w~~~~pl~DPmCGSG--Ti~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~  266 (381)
T COG0116         189 WKPDEPLLDPMCGSG--TILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRH  266 (381)
T ss_pred             CCCCCccccCCCCcc--HHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHH
Confidence            566779999999999  65543322  21                                1       37899999999


Q ss_pred             HHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         122 FEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       122 l~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ++.|+.+....   ..++|.++++..+...+       ..+|.|+.|..|
T Consensus       267 i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~-------~~~gvvI~NPPY  309 (381)
T COG0116         267 IEGAKANARAAGVGDLIEFKQADATDLKEPL-------EEYGVVISNPPY  309 (381)
T ss_pred             HHHHHHHHHhcCCCceEEEEEcchhhCCCCC-------CcCCEEEeCCCc
Confidence            99999865442   37999999998876543       247889977766

>PRK04148 hypothetical protein; Provisional

Probab=92.79  E-value=0.41  Score=43.22  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=35.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL  128 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l  128 (413)
                      ..+..++|.-+|.|.+....|... +..|+|+|+++.|++.++++
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~   58 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL   58 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh
Confidence            345789999999998666666654 46999999999999998765

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=92.72  E-value=0.27  Score=51.00  Aligned_cols=77  Identities=14%  Similarity=0.157  Sum_probs=58.7

Q ss_pred             CEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      -.++|+-.|.|--+..++...++ .+|++.|++|.|++..+++++...  ++.+++++...   ++...+   ..+|.|.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~---~l~~~~---~~fDvId  119 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAAN---VLRYRN---RKFHVID  119 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHH---HHHHhC---CCCCEEE
Confidence            48999999999988888887654 589999999999999988765432  57788876544   344322   3599999


Q ss_pred             EcCCCCc
Q psy7191         164 MDVGISD  170 (413)
Q Consensus       164 fDLGvSS  170 (413)
                      +|- +-+
T Consensus       120 lDP-fGs  125 (374)
T TIGR00308       120 IDP-FGT  125 (374)
T ss_pred             eCC-CCC
Confidence            887 544

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.71  E-value=0.18  Score=49.33  Aligned_cols=55  Identities=24%  Similarity=0.276  Sum_probs=36.5

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CC--CEEEEEeCCHHHHHHHHhhh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GN--VKVICLDRDKESFEKAKTLA  129 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~--g~Via~DrD~~Al~~Ak~ll  129 (413)
                      ++.++..|. -...-.+-|+|||+| |-.-+|..+ ++  ..|||-|+|++|++.|.++|
T Consensus        40 ~qR~l~~l~-~~~p~tLyDPCCG~g-yLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL   97 (246)
T PF11599_consen   40 FQRALHYLE-GKGPYTLYDPCCGSG-YLLTVLGLLHRRRLRRVYASDIDEDALELARKNL   97 (246)
T ss_dssp             HHHHHCTSS-S-S-EEEEETT-TTS-HHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred             HHHHHHhhc-CCCCeeeeccCCCcc-HHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence            345566664 233347789999999 455555544 33  68999999999999998765

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=92.39  E-value=0.39  Score=44.53  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+..++|..+|.|.-+..+++..  .+++|+|.++.+++.++++.....  ++.+..+++.++   ....   .+.+|.|
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~---~~~~D~i  116 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDL---AEKG---AKSFDVV  116 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHh---hcCC---CCCccEE
Confidence            46789999999998777776543  469999999999999887654322  577777765443   2111   2468998


Q ss_pred             EEc
Q psy7191         163 IMD  165 (413)
Q Consensus       163 LfD  165 (413)
                      +..
T Consensus       117 ~~~  119 (224)
T TIGR01983       117 TCM  119 (224)
T ss_pred             Eeh
Confidence            864

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=91.89  E-value=1.2  Score=42.41  Aligned_cols=96  Identities=14%  Similarity=0.149  Sum_probs=66.9

Q ss_pred             cchHhHHhccCCC--CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCCh
Q psy7191          71 RTFQTSASGLNDS--SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDL  145 (413)
Q Consensus        71 vll~evi~~L~~~--~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l  145 (413)
                      .+-+.+.+.|. +  -.|..++|+-.|.|+=...=|++. -.+++.+|.|..|+...+++++..   .++.+++.+=.  
T Consensus        28 rVREalFNil~-~~~i~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~--  103 (187)
T COG0742          28 RVREALFNILA-PDEIEGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL--  103 (187)
T ss_pred             HHHHHHHHhcc-ccccCCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH--
Confidence            33444455554 3  468999999999997666655552 358999999999999988765532   36777766543  


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCCCccC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGvSS~Q  172 (413)
                       .+|+..+-. +.+|.|.+|=.|-.-.
T Consensus       104 -~~L~~~~~~-~~FDlVflDPPy~~~l  128 (187)
T COG0742         104 -RALKQLGTR-EPFDLVFLDPPYAKGL  128 (187)
T ss_pred             -HHHHhcCCC-CcccEEEeCCCCccch
Confidence             566665532 2599999998886333

>KOG2187|consensus

Probab=91.87  E-value=0.26  Score=53.25  Aligned_cols=72  Identities=19%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCC
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSD  144 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~  144 (413)
                      +||-.-+=+++. ...+.+++|++||.|=-+.++..  +-.+|||+.++|+|++.|+...+..+  +.+|+.+.-.+
T Consensus       369 evLys~i~e~~~-l~~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  369 EVLYSTIGEWAG-LPADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED  442 (534)
T ss_pred             HHHHHHHHHHhC-CCCCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence            445555556665 67789999999999966655544  34789999999999999988765433  89999984433

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=91.81  E-value=0.89  Score=44.33  Aligned_cols=76  Identities=25%  Similarity=0.351  Sum_probs=53.1

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .-++=.-.|.||-+..+++..+..+|.++|+||.+++.+++.+..      .+|++++.++-   ..++++..-  .++|
T Consensus        78 ~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg---~~~l~~~~~--~~yD  152 (246)
T PF01564_consen   78 KRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG---RKFLKETQE--EKYD  152 (246)
T ss_dssp             -EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH---HHHHHTSSS--T-EE
T ss_pred             CceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh---HHHHHhccC--Cccc
Confidence            344445589999999998765567999999999999999875421      24999987654   456766421  1699


Q ss_pred             EEEEcCC
Q psy7191         161 GIIMDVG  167 (413)
Q Consensus       161 GILfDLG  167 (413)
                      .|+.|+-
T Consensus       153 vIi~D~~  159 (246)
T PF01564_consen  153 VIIVDLT  159 (246)
T ss_dssp             EEEEESS
T ss_pred             EEEEeCC
Confidence            9998873

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=91.32  E-value=1.4  Score=44.21  Aligned_cols=77  Identities=21%  Similarity=0.338  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-----C-CCeEEEecCCCChHHHHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-----D-PRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-----~-~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      ++| .-++=.-.|.||=++.+|+..+--+++.+|+|++.++.+++.+..     + +|++++.++   -.++++...   
T Consensus        75 ~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D---g~~~v~~~~---  147 (282)
T COG0421          75 PNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD---GVEFLRDCE---  147 (282)
T ss_pred             CCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc---HHHHHHhCC---
Confidence            445 467778899999999999887778999999999999999986542     2 588887554   346676542   


Q ss_pred             CCccEEEEcC
Q psy7191         157 NSIDGIIMDV  166 (413)
Q Consensus       157 ~~VDGILfDL  166 (413)
                      .++|.|+.|.
T Consensus       148 ~~fDvIi~D~  157 (282)
T COG0421         148 EKFDVIIVDS  157 (282)
T ss_pred             CcCCEEEEcC
Confidence            3699999885

>KOG2361|consensus

Probab=91.29  E-value=0.99  Score=44.88  Aligned_cols=151  Identities=19%  Similarity=0.212  Sum_probs=92.0

Q ss_pred             hhhhhccCCccccchHhHHhccCCCC--CCCEEEEEecCCchhHHHHHHhcCC--CEEEEEeCCHHHHHHHHhhhcCCC-
Q psy7191          59 RLSEDIYNKKYPRTFQTSASGLNDSS--DDVTMIDMTYGDGNHTRLILENIGN--VKVICLDRDKESFEKAKTLAANDP-  133 (413)
Q Consensus        59 ~~~~n~y~~H~pvll~evi~~L~~~~--~~~i~VDaTlG~GGHS~aILe~~p~--g~Via~DrD~~Al~~Ak~ll~~~~-  133 (413)
                      .++.|-+.+---=|++|.=+.+. ..  +.+.++..-||.|.-.--||+-.|+  .+|||+|-.|.|++..++..+..+ 
T Consensus        44 ~~~~~rFfkdR~wL~~Efpel~~-~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~  122 (264)
T KOG2361|consen   44 KIHENRFFKDRNWLLREFPELLP-VDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES  122 (264)
T ss_pred             hhccccccchhHHHHHhhHHhhC-ccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh
Confidence            33333333333346666555552 22  2237899999999999999998876  899999999999999988765433 


Q ss_pred             CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCc--------------cCCCCc-cCCCCCCCcc---cCCC--
Q psy7191         134 RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQA--------------NSTRGF-KPDSNSLLDM---RMSQ--  193 (413)
Q Consensus       134 rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Ql--------------d~~RGF-Sf~~dgPLDM---RMd~--  193 (413)
                      ++.....+++.-.  +. ..+..+.||+|.+=+=.|.-.=              .|+ |+ -|+.=|..||   |+-.  
T Consensus       123 ~~~afv~Dlt~~~--~~-~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPG-G~llfrDYg~~DlaqlRF~~~~  198 (264)
T KOG2361|consen  123 RVEAFVWDLTSPS--LK-EPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPG-GSLLFRDYGRYDLAQLRFKKGQ  198 (264)
T ss_pred             hhcccceeccchh--cc-CCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCC-cEEEEeecccchHHHHhccCCc
Confidence            6665555555433  22 2344567888765544443221              122 33 2333366666   2221  


Q ss_pred             ----------CCCCHHHHHhcCCHHHHHHHHHHcC
Q psy7191         194 ----------EGITGYQVLSAIDEVSLAKILKTYG  218 (413)
Q Consensus       194 ----------~~~tA~~vlN~~~e~eL~~I~~~YG  218 (413)
                                .|.-    +--.++++|..+|.+=|
T Consensus       199 ~i~~nfYVRgDGT~----~YfF~~eeL~~~f~~ag  229 (264)
T KOG2361|consen  199 CISENFYVRGDGTR----AYFFTEEELDELFTKAG  229 (264)
T ss_pred             eeecceEEccCCce----eeeccHHHHHHHHHhcc
Confidence                      1222    23478889999998888

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.00  E-value=1  Score=37.51  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=50.5

Q ss_pred             cCCchhHHHHHHhc-CCC-EEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191          94 YGDGNHTRLILENI-GNV-KVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus        94 lG~GGHS~aILe~~-p~g-~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      +|.|..+..+++.+ .++ .|+.+|.|++..+.+.+.     .+.++.+++.+.+ .|++.++.  ..+.++...+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-----~~~~i~gd~~~~~-~l~~a~i~--~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-----GVEVIYGDATDPE-VLERAGIE--KADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-----TSEEEES-TTSHH-HHHHTTGG--CESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-----ccccccccchhhh-HHhhcCcc--ccCEEEEccC
Confidence            69999999999988 455 899999999998877553     2678999999975 45556664  6999997665

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=90.66  E-value=0.19  Score=49.89  Aligned_cols=75  Identities=24%  Similarity=0.334  Sum_probs=52.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh--cC-CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA--AN-DP-RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll--~~-~~-rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ++.|+.++|+|.|-|.-+..=+++ ...+||.+..||..++.|+-+-  .+ +. ++.+++++-.+   +++.++  .++
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e---~V~~~~--D~s  205 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE---VVKDFD--DES  205 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH---HHhcCC--ccc
Confidence            666999999999999655555544 2249999999999999986431  11 22 68888887543   444433  347


Q ss_pred             ccEEE
Q psy7191         159 IDGII  163 (413)
Q Consensus       159 VDGIL  163 (413)
                      ||+|+
T Consensus       206 fDaIi  210 (287)
T COG2521         206 FDAII  210 (287)
T ss_pred             cceEe
Confidence            99999

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=90.56  E-value=0.87  Score=43.57  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +.||..++|.-||.|- =.+.|....++..+|+|+|++.+..+.++     -+.+++++-   ++-|..+  +...||.|
T Consensus        11 I~pgsrVLDLGCGdG~-LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dl---d~gL~~f--~d~sFD~V   79 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGE-LLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDL---DEGLADF--PDQSFDYV   79 (193)
T ss_pred             cCCCCEEEecCCCchH-HHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCH---HHhHhhC--CCCCccEE
Confidence            4689999999999993 33444444578999999999998776443     255566543   3334332  23456666


Q ss_pred             E
Q psy7191         163 I  163 (413)
Q Consensus       163 L  163 (413)
                      +
T Consensus        80 I   80 (193)
T PF07021_consen   80 I   80 (193)
T ss_pred             e
Confidence            6

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=89.56  E-value=1.3  Score=46.02  Aligned_cols=80  Identities=11%  Similarity=0.177  Sum_probs=53.9

Q ss_pred             hHhHHhccCC-------CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC-CCC
Q psy7191          73 FQTSASGLND-------SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK-FSD  144 (413)
Q Consensus        73 l~evi~~L~~-------~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n-Fs~  144 (413)
                      |.|.++.+..       +.+|..+||.-++.||-|..++++  +++|+|+|..+-+    .. +...++|+.+..+ |..
T Consensus       192 LeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~----~~-L~~~~~V~h~~~d~fr~  264 (357)
T PRK11760        192 LEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMA----QS-LMDTGQVEHLRADGFKF  264 (357)
T ss_pred             HHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcC----Hh-hhCCCCEEEEeccCccc
Confidence            5666666541       357899999999999999999987  4699999976532    22 2233577766544 554


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCC
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      .+.        .+.||-++-|.=
T Consensus       265 ~p~--------~~~vDwvVcDmv  279 (357)
T PRK11760        265 RPP--------RKNVDWLVCDMV  279 (357)
T ss_pred             CCC--------CCCCCEEEEecc
Confidence            321        235788886553

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=89.24  E-value=0.84  Score=45.66  Aligned_cols=78  Identities=19%  Similarity=0.340  Sum_probs=54.1

Q ss_pred             hHhHHhccCCCC-CCCEEEEEecC--CchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCC--eEEEecCCCChH
Q psy7191          73 FQTSASGLNDSS-DDVTMIDMTYG--DGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPR--LVPVYGKFSDLP  146 (413)
Q Consensus        73 l~evi~~L~~~~-~~~i~VDaTlG--~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~r--v~~i~~nFs~l~  146 (413)
                      |.-++.+|. -. .-.-|||+-.|  +-|++-.+.... |+++|+=+|.||.++..++.+|...++  ..+++++..+.+
T Consensus        56 l~RaVr~la-~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~  134 (267)
T PF04672_consen   56 LRRAVRYLA-EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPE  134 (267)
T ss_dssp             HHHHHHHHH-CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HH
T ss_pred             HHHHHHHHH-HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHH
Confidence            455666764 22 22479998777  446788888775 999999999999999999999876555  999999999999


Q ss_pred             HHHHh
Q psy7191         147 NILKN  151 (413)
Q Consensus       147 ~~L~~  151 (413)
                      .+|..
T Consensus       135 ~iL~~  139 (267)
T PF04672_consen  135 AILAH  139 (267)
T ss_dssp             HHHCS
T ss_pred             HHhcC
Confidence            99974

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=88.91  E-value=6.7  Score=38.33  Aligned_cols=112  Identities=13%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             HHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchh--HHHHHHh--cCCCEEEEEeCCHHHH
Q psy7191          47 EETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNH--TRLILEN--IGNVKVICLDRDKESF  122 (413)
Q Consensus        47 ~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGH--S~aILe~--~p~g~Via~DrD~~Al  122 (413)
                      +|...+-|-.==+.|+++.-.+    ..|.|.+|..-.+...+|+++.++|.-  |.+|...  .-+|++++|--|++.+
T Consensus         7 pe~AtkAYl~Tvk~c~~~~ep~----~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~   82 (218)
T PF07279_consen    7 PENATKAYLDTVKMCKKFKEPG----VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSL   82 (218)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCC----HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhH
Confidence            3455555555555677665443    458888886555678999998887654  3444433  3579999999999987


Q ss_pred             HHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         123 EKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       123 ~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ...++.+....   -+.|+.++=  ..+++..+    ..+|++|+|.-.
T Consensus        83 ~~~~~~l~~~~~~~~vEfvvg~~--~e~~~~~~----~~iDF~vVDc~~  125 (218)
T PF07279_consen   83 SEYKKALGEAGLSDVVEFVVGEA--PEEVMPGL----KGIDFVVVDCKR  125 (218)
T ss_pred             HHHHHHHhhccccccceEEecCC--HHHHHhhc----cCCCEEEEeCCc
Confidence            66655544332   457776532  33455443    369999988663

The function of this family is unknown.

>PRK13699 putative methylase; Provisional

Probab=88.91  E-value=0.95  Score=43.67  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=46.3

Q ss_pred             cCCccccch-HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          65 YNKKYPRTF-QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        65 y~~H~pvll-~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      |-.-.|+=| +.+|...  .++|++++|.=+|.|  |+++....-+-+.+|+|++++-.+.|.++++.
T Consensus       144 hp~~kP~~l~~~~i~~~--s~~g~~vlDpf~Gsg--tt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        144 HPTEKPVTSLQPLIESF--THPNAIVLDPFAGSG--STCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCCCcHHHHHHHHHHh--CCCCCEEEeCCCCCC--HHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            444456533 3345444  468999999999999  77776654456789999999999998877654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=87.71  E-value=2.1  Score=43.87  Aligned_cols=40  Identities=15%  Similarity=0.159  Sum_probs=33.4

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHH
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEK  124 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~  124 (413)
                      -.|..++|.-||+|.|+-.++..-+ ..|+|||-++--+..
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~Q  153 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQ  153 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHH
Confidence            3588999999999999999998744 479999988776655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG3010|consensus

Probab=87.63  E-value=0.66  Score=46.06  Aligned_cols=70  Identities=16%  Similarity=0.187  Sum_probs=45.8

Q ss_pred             cCCccccchHhHHhccCCCCCC-CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDD-VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS  143 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~-~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs  143 (413)
                      .++-||-=+=.-+..+   .++ .+.+|.-+|+| -+..+++.++. .|||.|..+.+|+.|++.    ++++..|..++
T Consensus        15 ARP~YPtdw~~~ia~~---~~~h~~a~DvG~G~G-qa~~~iae~~k-~VIatD~s~~mL~~a~k~----~~~~y~~t~~~   85 (261)
T KOG3010|consen   15 ARPSYPTDWFKKIASR---TEGHRLAWDVGTGNG-QAARGIAEHYK-EVIATDVSEAMLKVAKKH----PPVTYCHTPST   85 (261)
T ss_pred             cCCCCcHHHHHHHHhh---CCCcceEEEeccCCC-cchHHHHHhhh-hheeecCCHHHHHHhhcC----CCcccccCCcc
Confidence            3566673222223333   233 39999999999 67777666654 699999999999988764    24444444443

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=87.35  E-value=1  Score=44.52  Aligned_cols=44  Identities=20%  Similarity=0.270  Sum_probs=36.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      +|..++|.-||+|-=|.-+...  +..|+|+|.++.+|+.|+....
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~  102 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHAL  102 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhh
Confidence            6889999999999666666544  4799999999999999986543

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=87.33  E-value=2.4  Score=40.78  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=63.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHh--hhc-------C---C--CCe
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT--LAA-------N---D--PRL  135 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~--ll~-------~---~--~rv  135 (413)
                      .-.|.+.++.+. ..+++.+++--||.|-+...++++  +-.|+|+|..+.|++.+.+  .+.       .   +  .++
T Consensus        23 ~p~L~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i   99 (218)
T PF05724_consen   23 NPALVEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI   99 (218)
T ss_dssp             THHHHHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred             CHHHHHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence            344556666665 677889999999999666666654  3589999999999999732  221       0   1  267


Q ss_pred             EEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCccCCCCccCCCCCCCccc
Q psy7191         136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMR  190 (413)
Q Consensus       136 ~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld~~RGFSf~~dgPLDMR  190 (413)
                      ++++++|=++..-.      .++||+|.            +|||=-.-  |-+||
T Consensus       100 ~~~~gDfF~l~~~~------~g~fD~iy------------Dr~~l~Al--pp~~R  134 (218)
T PF05724_consen  100 TIYCGDFFELPPED------VGKFDLIY------------DRTFLCAL--PPEMR  134 (218)
T ss_dssp             EEEES-TTTGGGSC------HHSEEEEE------------ECSSTTTS---GGGH
T ss_pred             EEEEcccccCChhh------cCCceEEE------------EecccccC--CHHHH
Confidence            89999987764211      12578776            66654322  45676

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=87.02  E-value=1.8  Score=43.57  Aligned_cols=76  Identities=26%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC--CCeEEEecC-CCChHHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND--PRLVPVYGK-FSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~--~rv~~i~~n-Fs~l~~~L~~~~~~~~~V  159 (413)
                      .+..++|+-+=+||-|.+-+.. .-.+|+++|.+..|++.|+++.+  .+  .+++++..+ |..+.+ +++.    +++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~-~~~~----~~f  196 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKR-LKKG----GRF  196 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHH-HHHT----T-E
T ss_pred             CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHH-HhcC----CCC
Confidence            4779999999999998875532 23489999999999999988644  33  378888776 444433 3332    369


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.|++|-
T Consensus       197 D~IIlDP  203 (286)
T PF10672_consen  197 DLIILDP  203 (286)
T ss_dssp             EEEEE--
T ss_pred             CEEEECC
Confidence            9999543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=86.84  E-value=0.43  Score=46.17  Aligned_cols=49  Identities=22%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhccc
Q psy7191         299 YNGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVI  352 (413)
Q Consensus       299 FQALRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~  352 (413)
                      +-+||-.-     ....+|..+..+|||||+++|+-|+.-+-.+++.+++-+..
T Consensus       123 ~fglrn~~-----d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~  171 (233)
T PF01209_consen  123 SFGLRNFP-----DRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFK  171 (233)
T ss_dssp             ES-GGG-S-----SHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---
T ss_pred             HhhHHhhC-----CHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeec
Confidence            33677443     36779999999999999999999999998889888776543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=86.50  E-value=1.9  Score=45.28  Aligned_cols=76  Identities=21%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCC--CeEEEecC-CCChHHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDP--RLVPVYGK-FSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~--rv~~i~~n-Fs~l~~~L~~~~~~~~~V  159 (413)
                      .|+.++|+-+=+||-|.+-+.. .-..|+++|.+..|++-|+++.+  ..+  ++.+++++ |..|...-+ .|   ..+
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~-~g---~~f  291 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER-RG---EKF  291 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh-cC---Ccc
Confidence            3889999999999988876543 22389999999999999998654  332  78888877 555543332 23   369


Q ss_pred             cEEEEc
Q psy7191         160 DGIIMD  165 (413)
Q Consensus       160 DGILfD  165 (413)
                      |.|++|
T Consensus       292 DlIilD  297 (393)
T COG1092         292 DLIILD  297 (393)
T ss_pred             cEEEEC
Confidence            999943

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=86.25  E-value=3.6  Score=39.20  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~  151 (413)
                      .+.....+. +..|--++..--|.|=-|++||++- ++..|+++..|++-...-.+   .|+-+.+++++--+++..+.+
T Consensus        37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~---~~p~~~ii~gda~~l~~~l~e  112 (194)
T COG3963          37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ---LYPGVNIINGDAFDLRTTLGE  112 (194)
T ss_pred             HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH---hCCCccccccchhhHHHHHhh
Confidence            333344444 6777789999999999999999996 66789999999987655444   367677999998899988888


Q ss_pred             cCCCCCCccEEEEcCCC
Q psy7191         152 MNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       152 ~~~~~~~VDGILfDLGv  168 (413)
                      ...+  .||.|+==|.+
T Consensus       113 ~~gq--~~D~viS~lPl  127 (194)
T COG3963         113 HKGQ--FFDSVISGLPL  127 (194)
T ss_pred             cCCC--eeeeEEecccc
Confidence            6554  48888744444

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=84.64  E-value=0.77  Score=37.91  Aligned_cols=65  Identities=25%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             CchhHHHHHHhcC-CC--EEEEEeCCHH---HHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191          96 DGNHTRLILENIG-NV--KVICLDRDKE---SFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus        96 ~GGHS~aILe~~p-~g--~Via~DrD~~---Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      .|+=|..|++.++ ++  +++++|..+.   +-+..++  ... .+++++++++.+.-..+.     ..++|.|++|.+
T Consensus         7 ~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~iDg~   78 (106)
T PF13578_consen    7 SGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEEEES-
T ss_pred             cccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEEECCC
Confidence            6766777777774 33  7999999994   3333332  112 389999999965433332     136999999975

>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A

Probab=84.55  E-value=0.26  Score=38.50  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             HhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHH
Q psy7191         202 LSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNEL  249 (413)
Q Consensus       202 lN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~i  249 (413)
                      ||+.+.+||..+-   |   -....|++|+++|.+.+||.+..||.++
T Consensus         8 iN~as~~eL~~lp---g---i~~~~A~~Iv~~R~~~G~f~s~~dL~~v   49 (65)
T PF12836_consen    8 INTASAEELQALP---G---IGPKQAKAIVEYREKNGPFKSLEDLKEV   49 (65)
T ss_dssp             TTTS-HHHHHTST---T-----HHHHHHHHHHHHHH-S-SSGGGGGGS
T ss_pred             CccCCHHHHHHcC---C---CCHHHHHHHHHHHHhCcCCCCHHHHhhC
Confidence            6888999987651   1   2578899999999888899999999754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=82.57  E-value=1.4  Score=40.16  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=29.1

Q ss_pred             HHHHHHHhhcccCCeEEEEEcc-----chhhHHHHHHHhhcc
Q psy7191         315 YAMIIAEKYLKPEGLLLTKCNS-----IVEDKIVKRHLTGNV  351 (413)
Q Consensus       315 ~~L~~a~~~L~pgGrl~VISFH-----SLEDRiVK~~f~~~~  351 (413)
                      .+|+++.++|+|||+|+|+.|.     --|-.-|..|++.+.
T Consensus        73 ~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~  114 (140)
T PF06962_consen   73 KALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD  114 (140)
T ss_dssp             HHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred             HHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence            4578889999999999999997     467888988888753

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK00536 speE spermidine synthase; Provisional

Probab=81.34  E-value=4.7  Score=40.11  Aligned_cols=71  Identities=10%  Similarity=0.064  Sum_probs=50.2

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC----C--CCeEEEecCCCChHHHHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN----D--PRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~----~--~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      +.|. .++=+--|.||=.+.+|+. |. +|.-+|+|+++++.+++-+..    +  +|++++.        ++.+..  .
T Consensus        71 ~~pk-~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--------~~~~~~--~  137 (262)
T PRK00536         71 KELK-EVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--------QLLDLD--I  137 (262)
T ss_pred             CCCC-eEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--------hhhhcc--C
Confidence            4443 4444566888889999976 54 999999999999999884321    2  4999885        122211  2


Q ss_pred             CCccEEEEcC
Q psy7191         157 NSIDGIIMDV  166 (413)
Q Consensus       157 ~~VDGILfDL  166 (413)
                      +.+|.||.|+
T Consensus       138 ~~fDVIIvDs  147 (262)
T PRK00536        138 KKYDLIICLQ  147 (262)
T ss_pred             CcCCEEEEcC
Confidence            4699999994

>PRK12939 short chain dehydrogenase; Provisional

Probab=80.77  E-value=13  Score=34.21  Aligned_cols=84  Identities=12%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V  159 (413)
                      +..++ .|-|+||=..++.+.+  .+.+|++++++++.++...+.++.. .++.++..++.+...+   +....-..+++
T Consensus         7 ~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          7 GKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            34444 6666666666666655  3468999999988776654433332 3788899998876543   22210011369


Q ss_pred             cEEEEcCCCCc
Q psy7191         160 DGIIMDVGISD  170 (413)
Q Consensus       160 DGILfDLGvSS  170 (413)
                      |+++...|++.
T Consensus        86 d~vi~~ag~~~   96 (250)
T PRK12939         86 DGLVNNAGITN   96 (250)
T ss_pred             CEEEECCCCCC
Confidence            99999998754

>PRK06194 hypothetical protein; Provisional

Probab=80.32  E-value=10  Score=36.14  Aligned_cols=85  Identities=11%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V  159 (413)
                      +..++ .|=|+||=-.++.+.+  .+.+|+.+|+++..++...+.+.... ++.++..+..+...+   ++...-..+.+
T Consensus         6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            34444 6777777777777665  34689999999887776544333223 788899998875433   32210011358


Q ss_pred             cEEEEcCCCCcc
Q psy7191         160 DGIIMDVGISDS  171 (413)
Q Consensus       160 DGILfDLGvSS~  171 (413)
                      |.++...|+++.
T Consensus        85 d~vi~~Ag~~~~   96 (287)
T PRK06194         85 HLLFNNAGVGAG   96 (287)
T ss_pred             CEEEECCCCCCC
Confidence            999999998664

>PRK07478 short chain dehydrogenase; Provisional

Probab=80.29  E-value=18  Score=33.77  Aligned_cols=83  Identities=14%  Similarity=0.140  Sum_probs=54.1

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~V  159 (413)
                      +++++ .|-|+||=-.++.+.+  .+.+|+.+++++..++...+.+... .++.++..+..+.+.+   +++..-..+.+
T Consensus         6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            34554 6777777666776665  3469999999998877655444333 3788888888875432   22210011369


Q ss_pred             cEEEEcCCCC
Q psy7191         160 DGIIMDVGIS  169 (413)
Q Consensus       160 DGILfDLGvS  169 (413)
                      |+++...|+.
T Consensus        85 d~li~~ag~~   94 (254)
T PRK07478         85 DIAFNNAGTL   94 (254)
T ss_pred             CEEEECCCCC
Confidence            9999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	413
3tka_A	347	Crystal Structure And Solution Saxs Of Methyltransf		6e-30
1wg8_A	285	Crystal Structure Of A Predicted S-Adenosylmethioni		3e-25
1m6y_A	301	Crystal Structure Analysis Of Tm0872, A Putative Sa		2e-19

>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase Rsmh From E.Coli Length = 347

Iteration: 1
 Score =  128 bits (321), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 144/278 (51%), Gaps = 39/278 (14%)
Query: 76  SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPR 134
           + +GLN   D +  ID T+G G H+RLIL  +G   +++ +DRD ++   AKT+  +DPR
Sbjct: 49  AVNGLNIRPDGI-YIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI--DDPR 105
Query: 135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRM-S 192
              ++G FS L   +    +    IDGI++D+G+S  Q + + RGF    +  LDMRM  
Sbjct: 106 FSIIHGPFSALGEYVAE-RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDP 164
Query: 193 QEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVAS 252
             G +  + L   +E  +A +LKTYGEE+ +++IARAI+E R   + + RT++L E+VA+
Sbjct: 165 TRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVE-RNREQPMTRTKELAEVVAA 223
Query: 253 VSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNE 312
            +                               P K   +H A + +  +R +VN+EL E
Sbjct: 224 AT-------------------------------PVKDKFKHPATRTFQAVRIWVNSELEE 252
Query: 313 LNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN 350
           +  A+  +   L P G L       +ED+IVKR +  N
Sbjct: 253 IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMREN 290

>pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine- Dependent Methyltransferase Tt1512 From Thermus Thermophilus Hb8. Length = 285

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 125/259 (48%), Gaps = 40/259 (15%)
Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL 149
           +D T G   H R ILE  G  +VI LD+D E+  +AK L  + P L  V G F  L   L
Sbjct: 27  VDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGL--HLPGLTVVQGNFRHLKRHL 82
Query: 150 KNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEV 208
             +      +DGI+ D+G+S    +  +RGF       LDMRM  EG T  +V++ +   
Sbjct: 83  AALG--VERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLE 140
Query: 209 SLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTES 268
           +LA++L+  GEE ++ +IARAI+  R     +E T  L E+V    R +  ++RA     
Sbjct: 141 ALARLLRELGEEPQAYRIARAIVAAREK-APIETTTQLAEIV----RKAVGFRRAG---- 191
Query: 269 LQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEG 328
                                   H A+K +  LR +VN+ELN L   +  A + L P G
Sbjct: 192 ------------------------HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGG 227
Query: 329 LLLTKCNSIVEDKIVKRHL 347
            L+      +ED++VKR L
Sbjct: 228 RLVVIAFHSLEDRVVKRFL 246

>pdb|1M6Y|A Chain A, Crystal Structure Analysis Of Tm0872, A Putative Sam- Dependent Methyltransferase, Complexed With Sah Length = 301

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 121/264 (45%), Gaps = 38/264 (14%)
Query: 85  DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAK-TLAANDPRLVPVYGKFS 143
           D+  ++D T G+G H+R ILE+    ++I +D D E    A+  L     R+      + 
Sbjct: 26  DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR 85
Query: 144 DLPNILKNMNNNFNSIDGIIMDVGISDSQ-ANSTRGFKPDSNSLLDMRMSQEG-ITGYQV 201
           +   +LK +      +DGI+ D+G+S  Q     RGF  +    LD R   E  +T  +V
Sbjct: 86  EADFLLKTLG--IEKVDGILXDLGVSTYQLKGENRGFTFEREEPLDXRXDLESEVTAQKV 143
Query: 202 LSAIDEVSLAKILKTYGEEKR-SRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTW 260
           L+ + E  LA+I+  YGEEKR +R+IAR I+E R     L  T DL + V   + PS   
Sbjct: 144 LNELPEEELARIIFEYGEEKRFARRIARKIVENR----PLNTTLDLVKAVRE-ALPSYEI 198
Query: 261 KRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIA 320
           +R  R                           H A K +  +R +VN EL  L   +  A
Sbjct: 199 RRRKR---------------------------HFATKTFQAIRIYVNRELENLKEFLKKA 231
Query: 321 EKYLKPEGLLLTKCNSIVEDKIVK 344
           E  L P G ++      +ED+IVK
Sbjct: 232 EDLLNPGGRIVVISFHSLEDRIVK 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	413
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	1e-54
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	2e-52
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	1e-51
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} Length = 347

 Score =  183 bits (467), Expect = 1e-54
 Identities = 95/334 (28%), Positives = 156/334 (46%), Gaps = 65/334 (19%)

Query: 90  IDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI 148
           ID T+G G H+RLIL  +G   +++ +DRD ++   AKT+   DPR   ++G FS L   
Sbjct: 62  IDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTID--DPRFSIIHGPFSALGEY 119

Query: 149 LKNMNNNFNSIDGIIMDVGISDSQ-ANSTRGFKPDSNSLLDMRMSQE-GITGYQVLSAID 206
           +   +     IDGI++D+G+S  Q  ++ RGF    +  LDMRM    G +  + L   +
Sbjct: 120 VAERDL-IGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAE 178

Query: 207 EVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRT 266
           E  +A +LKTYGEE+ +++IARAI+E     + + RT++L E+VA+ +            
Sbjct: 179 EADIAWVLKTYGEERFAKRIARAIVERNRE-QPMTRTKELAEVVAAAT------------ 225

Query: 267 ESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKP 326
                              P K   +H A + +  +R +VN+EL E+  A+  +   L P
Sbjct: 226 -------------------PVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAP 266

Query: 327 EGLLLTKCNSIV-----EDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSS 381
            G L     SI+     ED+IVKR      +   +       V   L +    +  L   
Sbjct: 267 GGRL-----SIISFHSLEDRIVKR-----FMRENSRG---PQVPAGLPMTEEQLKKLGGR 313

Query: 382 PWTILDKIIPSDSDL---------KLRVAMKKES 406
               L K++P + ++          LR+A +  +
Sbjct: 314 QLRALGKLMPGEEEVAENPRARSSVLRIAERTNA 347

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 Length = 285

 Score =  175 bits (447), Expect = 2e-52
 Identities = 81/262 (30%), Positives = 118/262 (45%), Gaps = 50/262 (19%)

Query: 90  IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL 149
           +D T G   H R ILE  G  +VI LD+D E+  +AK L    P L  V G F  L   L
Sbjct: 27  VDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKRHL 82

Query: 150 KNMNNNFNSIDGIIMDVGISDSQ-ANSTRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEV 208
             +      +DGI+ D+G+S     + +RGF       LDMRM  EG T  +V++ +   
Sbjct: 83  AALG--VERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLE 140

Query: 209 SLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTES 268
           +LA++L+  GEE ++ +IARAI+  R     +E T  L E+V                  
Sbjct: 141 ALARLLRELGEEPQAYRIARAIVAAREK-APIETTTQLAEIVRKAV-------------- 185

Query: 269 LQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKYLKPEG 328
                              +    H A+K +  LR +VN+ELN L   +  A + L P G
Sbjct: 186 -----------------GFRRAG-HPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGG 227

Query: 329 LLLTKCNSIV-----EDKIVKR 345
            L      ++     ED++VKR
Sbjct: 228 RL-----VVIAFHSLEDRVVKR 244

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* Length = 301

 Score =  174 bits (444), Expect = 1e-51
 Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 48/267 (17%)

Query: 88  TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKT-LAANDPRLVPVYGKFSDLP 146
            ++D T G+G H+R ILE+    ++I +D D E    A+  L     R+      + +  
Sbjct: 29  IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREAD 88

Query: 147 NILKNMNNNFNSIDGIIMDVGISDSQ-ANSTRGFKPDSNSLLDMRMSQE-GITGYQVLSA 204
            +LK +      +DGI+MD+G+S  Q     RGF  +    LDMRM  E  +T  +VL+ 
Sbjct: 89  FLLKTL--GIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLDMRMDLESEVTAQKVLNE 146

Query: 205 IDEVSLAKILKTYGEEKR-SRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRA 263
           + E  LA+I+  YGEEKR +R+IAR I+E R     L  T DL + V             
Sbjct: 147 LPEEELARIIFEYGEEKRFARRIARKIVENR----PLNTTLDLVKAVREA---------- 192

Query: 264 CRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVNNELNELNYAMIIAEKY 323
                             +     +    H A K +  +R +VN EL  L   +  AE  
Sbjct: 193 ------------------LPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDL 234

Query: 324 LKPEGLLLTKCNSIV-----EDKIVKR 345
           L P G +      ++     ED+IVK 
Sbjct: 235 LNPGGRI-----VVISFHSLEDRIVKE 256

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 75/479 (15%), Positives = 137/479 (28%), Gaps = 140/479 (29%)

Query: 4   SVLPGPSSTQFGLEEHMS-----LDFAEY------LRELTR--AQFVSNNKFTIEEEETL 50
           + +       + ++  M      L+          L  L +   Q   N     +    +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 51  KKNLASLK-RLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN 109
           K  + S++  L   + +K Y          L                     L+L N+ N
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN-------CL---------------------LVLLNVQN 255

Query: 110 VKVICLDRDKESFE-KAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI 168
            K         +F    K L         +  +F  + + L        S+D        
Sbjct: 256 AKAW------NAFNLSCKIL---------LTTRFKQVTDFLSAATTTHISLD-------- 292

Query: 169 SDSQANSTRGFKPD-SNSL----LDMRMSQ---EGITGY-QVLSAI-----DEVSLAKIL 214
                + +    PD   SL    LD R      E +T   + LS I     D ++     
Sbjct: 293 -----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 215 KTYGEEKRSRQIARAI-----IETRYTFKKLERTRDLNELVASVSRPSQT----WKRA-- 263
           K    +K +  I  ++      E R  F +L           S   P+      W     
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIK 401

Query: 264 ---------CRTESL--QWIATASVVGTEVRVDPRKHGSE----HVAQKV---YNGLRRF 305
                        SL  +    +++    + ++ +         H  + +   YN  + F
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKTF 459

Query: 306 VNNEL----------NELNYAMIIAEKYLKPEGLLLTKCN-SIVEDKIVKRHLTGNVIEH 354
            +++L          + + + +   E   +     +   +   +E KI       N    
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 355 CANDLA-LKFVNHNLTVNPLDMSSLTSSPWTILDK-----IIPSDSDLKLRVAMKKESN 407
             N L  LKF    +  N      L ++    L K     I    +DL LR+A+  E  
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-LRIALMAEDE 577

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	413
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	100.0
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	100.0
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	100.0
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.83
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.61
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.58
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.56
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.54
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.51
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.5
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.47
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.47
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.46
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.43
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.43
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.31
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.3
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.29
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.28
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.25
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.25
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.24
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.24
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.22
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.22
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.22
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.21
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.2
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.2
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.19
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.19
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.18
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.18
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.17
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.17
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.16
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.16
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.16
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.16
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.14
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.14
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.14
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.13
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.13
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.1
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.1
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.09
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.09
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.09
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.08
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.07
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.06
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.06
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.05
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.05
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.05
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.04
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.04
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.03
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.03
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.03
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.02
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.01
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.01
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.0
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.0
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.0
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.99
2b3t_A	276	Protein methyltransferase HEMK; translation termin	97.99
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	97.99
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.99
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	97.99
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.98
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.97
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	97.96
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.96
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.95
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.94
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.94
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.94
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	97.93
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.93
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	97.92
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.92
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.92
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.91
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	97.9
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.89
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	97.88
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.87
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.86
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.86
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.85
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.85
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	97.84
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.84
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	97.82
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.82
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.81
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.8
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.8
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.79
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	97.79
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.79
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.78
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.78
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	97.78
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	97.77
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.76
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.75
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	97.75
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.75
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	97.74
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.73
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.73
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.73
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.73
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.72
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.72
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	97.7
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.7
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.69
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	97.68
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.67
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.67
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	97.67
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.67
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.66
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.66
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.65
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	97.65
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	97.65
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.65
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	97.63
3ege_A	261	Putative methyltransferase from antibiotic biosyn	97.63
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.61
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	97.61
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	97.58
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	97.58
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.56
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.56
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.56
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.54
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.54
2qm3_A	373	Predicted methyltransferase; putative methyltransf	97.54
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.54
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.54
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.52
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.52
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.51
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.5
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.5
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.49
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	97.49
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.49
1xxl_A	239	YCGJ protein; structural genomics, protein structu	97.48
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	97.48
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.47
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.46
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.46
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	97.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	97.45
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.45
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.44
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	97.44
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	97.43
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.42
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.42
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	97.42
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.4
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	97.4
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.39
3ocj_A	305	Putative exported protein; structural genomics, PS	97.39
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.38
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	97.37
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.36
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.34
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.34
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	97.34
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.33
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.32
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	97.32
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.31
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.31
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.3
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	97.29
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.28
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.28
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.26
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.25
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.23
2o07_A	304	Spermidine synthase; structural genomics, structur	97.22
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.22
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.22
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.21
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.2
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.2
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.19
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.19
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.18
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.17
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	97.17
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.16
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.16
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	97.14
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	97.14
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	97.13
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.12
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.1
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.09
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	97.08
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.07
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.07
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.06
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.06
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.06
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	97.01
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.01
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	97.0
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	96.99
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	96.98
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	96.96
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.95
3cc8_A	230	Putative methyltransferase; structural genomics, j	96.95
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.92
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	96.91
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	96.9
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.89
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.89
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	96.88
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	96.86
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	96.86
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	96.84
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.83
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	96.83
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	96.76
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	96.74
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	96.69
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	96.68
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	96.64
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	96.57
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	96.57
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.46
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.42
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	96.4
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.39
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	96.37
3sso_A	419	Methyltransferase; macrolide, natural product, ros	96.34
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	96.24
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	96.16
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.09
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.04
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	96.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	95.95
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.93
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	95.75
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	95.59
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.56
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.26
3lkd_A	542	Type I restriction-modification system methyltrans	95.25
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	95.18
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.17
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	95.13
3khk_A	544	Type I restriction-modification system methylation	95.13
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	95.02
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.02
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.01
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	94.95
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	94.92
3cvo_A	202	Methyltransferase-like protein of unknown functio;	94.85
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	94.68
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	94.38
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	94.15
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	93.97
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	93.88
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.72
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.64
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	93.3
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	93.26
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	92.82
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	92.77
3ufb_A	530	Type I restriction-modification system methyltran	91.95
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	91.71
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	90.92
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	89.54
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	89.52
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	88.82
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	88.67
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	88.41
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	87.82
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	87.25
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	87.17
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	86.36
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	86.23
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	85.41
2oo3_A	283	Protein involved in catabolism of external DNA; st	83.88
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	83.45
3imf_A	257	Short chain dehydrogenase; structural genomics, in	83.11
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	82.98
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	82.91
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	82.48
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	80.73
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	80.71
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	80.62
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	80.1

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=100.00  E-value=5.1e-105  Score=796.27  Aligned_cols=294  Identities=32%  Similarity=0.502  Sum_probs=256.5

Q ss_pred             CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC
Q psy7191          66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD  144 (413)
Q Consensus        66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~  144 (413)
                      ..|+|||++|++++|. ++||++|||||||+||||.+||+++ |+|+|||||+||+|++.|+ ++. ..||++++++|++
T Consensus        39 ~~H~pVLl~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~  115 (347)
T 3tka_A           39 YKHTTVLLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSA  115 (347)
T ss_dssp             ---CCTTTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGG
T ss_pred             CCcccccHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHH
Confidence            4699999999999997 9999999999999999999999997 7899999999999999995 552 2599999999999


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCch
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEKR  222 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~~  222 (413)
                      +++++.+.|+. ++|||||||||||||||| |+|||||+.|||||||||+ +++||+||||+|++++|++||++|||||+
T Consensus       116 l~~~L~~~g~~-~~vDgILfDLGVSS~QlD~~eRGFSf~~dgPLDMRMd~~~~~tAadvvn~~~e~eLa~Il~~YGEEr~  194 (347)
T 3tka_A          116 LGEYVAERDLI-GKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF  194 (347)
T ss_dssp             HHHHHHHTTCT-TCEEEEEEECSCCHHHHHCGGGCCCSSSCCBSCCCSCTTSSCCHHHHHHHCCHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHhcCCC-CcccEEEECCccCHHHhcCCCCCCCCCCCCCcCCCCCCCCCCCHHHHHhhCCHHHHHHHHHHhcCcch
Confidence            99999998874 369999999999999999 9999999999999999999 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHH
Q psy7191         223 SRQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGL  302 (413)
Q Consensus       223 a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQAL  302 (413)
                      |++||++||++| +.+||+||.||+++|++++|...                               +++||||||||||
T Consensus       195 a~rIA~aIv~~R-~~~pi~tT~~La~ii~~a~p~~~-------------------------------~~~hpAtrtFQAL  242 (347)
T 3tka_A          195 AKRIARAIVERN-REQPMTRTKELAEVVAAATPVKD-------------------------------KFKHPATRTFQAV  242 (347)
T ss_dssp             HHHHHHHHHHHH-HHSCCCBHHHHHHHHHHHSCCC-----------------------------------CTTHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCCCCcHHHHHHHHHHhCCccc-------------------------------cCCCchHHHHHHH
Confidence            999999999999 78999999999999999998632                               3469999999999


Q ss_pred             HHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccc-cccccchhhhhcccCcCCCCcCCcCCCC
Q psy7191         303 RRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIE-HCANDLALKFVNHNLTVNPLDMSSLTSS  381 (413)
Q Consensus       303 RI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (413)
                      ||+||+||++|+.+|+.|+++|+|||||+|||||||||||||+||++.+.. .||+++|+|.|+..         ....+
T Consensus       243 RI~VN~EL~~L~~~L~~a~~~L~~gGRl~VISFHSLEDRiVK~~f~~~~~~~~~p~~~p~~~~~~~---------~~~~~  313 (347)
T 3tka_A          243 RIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLK---------KLGGR  313 (347)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTTCC----------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecCchhHHHHHHHHHHhccCCCCCccCCccccccc---------cccCc
Confidence            999999999999999999999999999999999999999999999997765 58889999888641         00134


Q ss_pred             CceeecccCCCccce---------eeeeEEee
Q psy7191         382 PWTILDKIIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       382 ~~~~itki~Ps~eEi---------KLRv~~k~  404 (413)
                      .|++||||+||++||         |||||+|+
T Consensus       314 ~~~~i~ki~ps~~Ei~~NpRsRSAkLRvaek~  345 (347)
T 3tka_A          314 QLRALGKLMPGEEEVAENPRARSSVLRIAERT  345 (347)
T ss_dssp             CEEEEEEECCCHHHHHHCGGGTTCEEEEEEEC
T ss_pred             ceeeecCcCcCHHHHHhCccccceeeeEEEec
Confidence            699999999999999         99999997

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=100.00  E-value=3e-98  Score=732.30  Aligned_cols=267  Identities=34%  Similarity=0.506  Sum_probs=253.1

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP  146 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~  146 (413)
                      .|+|||++|+++.|. ++++++|||||||+||||.+||++  +++|||||+||+|++.|++ ++. +|++++++||++++
T Consensus         5 ~H~pVLl~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~   79 (285)
T 1wg8_A            5 THVPVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLK   79 (285)
T ss_dssp             CCCCTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHH
T ss_pred             CchhHHHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHH
Confidence            599999999999997 999999999999999999999998  7899999999999999998 765 69999999999999


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHH
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQ  225 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~r  225 (413)
                      .+|.+.++.  +||||||||||||||+| |+|||||+.|||||||||.+++||+||||+|++++|++||++||||++|++
T Consensus        80 ~~L~~~g~~--~vDgIL~DLGvSS~Qld~~~RGFSf~~d~pLDMRMd~~~~tA~~~vn~~~~~~L~~i~~~yGee~~a~~  157 (285)
T 1wg8_A           80 RHLAALGVE--RVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYR  157 (285)
T ss_dssp             HHHHHTTCS--CEEEEEEECSCCHHHHHCGGGCCCSSSCCBSCCCSSSCSCCHHHHHHHSCHHHHHHHHHHHHCCTTHHH
T ss_pred             HHHHHcCCC--CcCEEEeCCccccccccccccCccccCCCcchhhcCCCCCcHHHHHhhCCHHHHHHHHHHhcCHhHHHH
Confidence            999998873  79999999999999999 999999999999999999778999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHHHH
Q psy7191         226 IARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRF  305 (413)
Q Consensus       226 IA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALRI~  305 (413)
                      ||++||++| +.+||+||.+|+++|++++|. .                               +.+||||||||||||+
T Consensus       158 iA~~Iv~~R-~~~pi~tt~~L~~ii~~~~p~-~-------------------------------~~~hpatr~FQAlRI~  204 (285)
T 1wg8_A          158 IARAIVAAR-EKAPIETTTQLAEIVRKAVGF-R-------------------------------RAGHPARKTFQALRIY  204 (285)
T ss_dssp             HHHHHHHHH-HHSCCCBHHHHHHHHHHHHCC-C-------------------------------SSSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHh-ccCCCCCHHHHHHHHHHHcCC-C-------------------------------CCCCchHHHHHHHHHH
Confidence            999999999 789999999999999999984 2                               2359999999999999


Q ss_pred             HhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCCcee
Q psy7191         306 VNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTI  385 (413)
Q Consensus       306 VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (413)
                      ||+||++|+.+|..|+++|+|||||+|||||||||||||+||++              |               .  |++
T Consensus       205 VN~EL~~L~~~L~~a~~~L~~gGrl~visfHSLEDRiVK~~~~~--------------~---------------~--~~~  253 (285)
T 1wg8_A          205 VNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRE--------------S---------------G--LKV  253 (285)
T ss_dssp             HTTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHH--------------H---------------C--SEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHh--------------C---------------C--ccc
Confidence            99999999999999999999999999999999999999999986              1               1  678


Q ss_pred             ecc--cCCCccce---------eeeeEEee
Q psy7191         386 LDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       386 itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                      +|+  |+||++||         ||||++|+
T Consensus       254 ~~~k~i~ps~~E~~~NpRsrSAkLR~~~r~  283 (285)
T 1wg8_A          254 LTKKPLVPSEKEAAQNPRARSAKLRAAEKE  283 (285)
T ss_dssp             SCSSCBCCCHHHHHHCGGGGGCEEEEEECC
T ss_pred             ccCCCcCCCHHHHHhCCCccceeceEEEec
Confidence            887  99999999         99999997

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=100.00  E-value=6.8e-79  Score=598.18  Aligned_cols=274  Identities=31%  Similarity=0.486  Sum_probs=254.4

Q ss_pred             cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCC
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFS  143 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs  143 (413)
                      -..|+|||++++++.|. +++++.|||+|||.||||.+|++.+|+++|+|+|+|+.|++.|+++++.+ .++++++++|.
T Consensus         7 ~~~h~pvLl~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~   85 (301)
T 1m6y_A            7 SQRHIPVMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYR   85 (301)
T ss_dssp             CSSCCCTTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGG
T ss_pred             CccccHHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHH
Confidence            35799999999999997 88999999999999999999999998889999999999999999987665 49999999999


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCC-
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEE-  220 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE-  220 (413)
                      +++.++.+.++  ..+|+|++|+||||+|++ ++|||||..||||||||++ .++||++|||++++++|++|++.|||| 
T Consensus        86 ~l~~~l~~~g~--~~~D~Vl~D~gvSs~qld~~~rgfs~~~d~pLdmrm~~~~~~ta~~~l~~~~~~~L~~i~~~yGee~  163 (301)
T 1m6y_A           86 EADFLLKTLGI--EKVDGILMDLGVSTYQLKGENRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEK  163 (301)
T ss_dssp             GHHHHHHHTTC--SCEEEEEEECSCCHHHHHTSCSCSSSSSCCBSCCCSSTTSSCCHHHHHHHSCHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhcCC--CCCCEEEEcCccchhhhcccccceEEeecccceeccCCccCccHHHHHhcCCHHHHHHHHHHhCccH
Confidence            99988877654  369999999999999999 9999999999999999999 789999999999999999999999999 


Q ss_pred             chHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCC-CccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHH
Q psy7191         221 KRSRQIARAIIETRYTFKKLERTRDLNELVASVSRP-SQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVY  299 (413)
Q Consensus       221 ~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~-~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~F  299 (413)
                      +++++||++|+++|    ||+||.||+++|++++|. ..      ++                       +..|||||||
T Consensus       164 r~a~~ia~aIv~~r----pi~tt~~L~~ii~~~~p~~~~------~~-----------------------~~~~pa~r~f  210 (301)
T 1m6y_A          164 RFARRIARKIVENR----PLNTTLDLVKAVREALPSYEI------RR-----------------------RKRHFATKTF  210 (301)
T ss_dssp             TTHHHHHHHHHHTC----SCCBHHHHHHHHHHHSCHHHH------HH-----------------------CSSCTTHHHH
T ss_pred             HHHHHHHHHHHHcC----CCCCHHHHHHHHHHHCCcccc------cc-----------------------cCCChHHHHH
Confidence            99999999999987    999999999999999985 21      22                       3469999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCC
Q psy7191         300 NGLRRFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLT  379 (413)
Q Consensus       300 QALRI~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (413)
                      |||||+||+||++|+.+|..++++|+|||||+|||||||||||||+||++      |                       
T Consensus       211 QalRi~vn~el~~l~~~l~~~~~~l~~ggr~~visfhsledr~vk~~~~~------~-----------------------  261 (301)
T 1m6y_A          211 QAIRIYVNRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRN------S-----------------------  261 (301)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHH------C-----------------------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHHHhhc------C-----------------------
Confidence            99999999999999999999999999999999999999999999999996      1                       


Q ss_pred             CCCceeecc--cCCCccce---------eeeeEEee
Q psy7191         380 SSPWTILDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       380 ~~~~~~itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                       +.|+++|+  |+||++||         ||||++|+
T Consensus       262 -~~~~~~~~~~~~~~~~e~~~n~r~rsa~lr~~~~~  296 (301)
T 1m6y_A          262 -KKLRILTEKPVRPSEEEIRENPRARSGRLRAAERI  296 (301)
T ss_dssp             -SSEEESCSSCBCCCHHHHHHCGGGTTCEEEEEEEC
T ss_pred             -CceeeecCCCCCCCHHHHHhCCcchhhhhheeeeh
Confidence             13778887  99999999         99999998

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.83  E-value=4.4e-09  Score=103.09  Aligned_cols=89  Identities=19%  Similarity=0.206  Sum_probs=71.6

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      ..|. ++++..++|+|+|.||+|.+|++.. +.++|+|+|+|+.+++.++++++.+  .+++++++++.++......   
T Consensus        96 ~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~---  171 (309)
T 2b9e_A           96 MLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR---  171 (309)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG---
T ss_pred             HHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccc---
Confidence            3454 7899999999999999999999987 4699999999999999999887654  3899999998765322111   


Q ss_pred             CCCCccEEEEcCCCCcc
Q psy7191         155 NFNSIDGIIMDVGISDS  171 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~  171 (413)
                       ...+|.||+|..||..
T Consensus       172 -~~~fD~Vl~D~PcSg~  187 (309)
T 2b9e_A          172 -YHEVHYILLDPSCSGS  187 (309)
T ss_dssp             -GTTEEEEEECCCCCC-
T ss_pred             -cCCCCEEEEcCCcCCC
Confidence             1359999999999865

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.61  E-value=4.1e-08  Score=85.97  Aligned_cols=78  Identities=19%  Similarity=0.319  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +.++..++|..+|.|..|..+++.  .++|+|+|+++.+++.|+++.+.  .++++++++++..+..+.      .+.+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~------~~~fD   91 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV------REPIR   91 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC------CSCEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc------cCCcC
Confidence            467899999999999999999877  68999999999999999887653  358999998887765433      24699


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|++++|+
T Consensus        92 ~v~~~~~~   99 (185)
T 3mti_A           92 AAIFNLGY   99 (185)
T ss_dssp             EEEEEEC-
T ss_pred             EEEEeCCC
Confidence            99998876

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.58  E-value=1e-07  Score=90.46  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=71.6

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      ..|. ++++..++|+++|.||.|..+++..++ ++|+|+|+++.+++.++++++..  .++.++++++.++...+...  
T Consensus        77 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~--  153 (274)
T 3ajd_A           77 IVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKN--  153 (274)
T ss_dssp             HHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHT--
T ss_pred             HHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhc--
Confidence            4454 788999999999999999999998876 89999999999999998876543  38999999887665443221  


Q ss_pred             CCCCccEEEEcCCCCccC
Q psy7191         155 NFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~Q  172 (413)
                       .+.+|.|+.|..||...
T Consensus       154 -~~~fD~Vl~d~Pcs~~g  170 (274)
T 3ajd_A          154 -EIFFDKILLDAPCSGNI  170 (274)
T ss_dssp             -TCCEEEEEEEECCC---
T ss_pred             -cccCCEEEEcCCCCCCc
Confidence             13699999998887643

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.56  E-value=1.3e-07  Score=95.61  Aligned_cols=90  Identities=17%  Similarity=0.188  Sum_probs=75.3

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      +..|. ++++..++|+++|.||.|..+++..++++|+|+|+++.+++.++++++..+ ++.++++++..+...+..    
T Consensus       239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~----  313 (429)
T 1sqg_A          239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGE----  313 (429)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTT----
T ss_pred             HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhccc----
Confidence            34444 788999999999999999999999888999999999999999988776544 688999999888765431    


Q ss_pred             CCCccEEEEcCCCCccC
Q psy7191         156 FNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~Q  172 (413)
                       +.+|.||+|..||..-
T Consensus       314 -~~fD~Vl~D~Pcsg~g  329 (429)
T 1sqg_A          314 -QQFDRILLDAPCSATG  329 (429)
T ss_dssp             -CCEEEEEEECCCCCGG
T ss_pred             -CCCCEEEEeCCCCccc
Confidence             3699999999998653

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.54  E-value=9.3e-08  Score=84.51  Aligned_cols=80  Identities=15%  Similarity=0.312  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      +++++.++|..+|.|+.+..+++.+ |.++|+|+|+++.+++.|+++++..   +++.++++++.++...+      .+.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~   93 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI------DCP   93 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC------CSC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc------cCC
Confidence            5788999999999999999999987 6789999999999999998876542   48999999987765432      247


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|++|+++
T Consensus        94 fD~v~~~~~~  103 (197)
T 3eey_A           94 VKAVMFNLGY  103 (197)
T ss_dssp             EEEEEEEESB
T ss_pred             ceEEEEcCCc
Confidence            9999999888

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.51  E-value=1.1e-07  Score=98.25  Aligned_cols=88  Identities=8%  Similarity=0.054  Sum_probs=72.0

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +..|. ++++..++|+++|.||.|.+|++..++ ++|+|+|+|+.+++.++++++..  .++.+++++...+...+.   
T Consensus        98 ~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~---  173 (456)
T 3m4x_A           98 GTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS---  173 (456)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHT---
T ss_pred             HHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcc---
Confidence            34444 788999999999999999999998864 89999999999999998876543  378888888776654442   


Q ss_pred             CCCCCccEEEEcCCCCcc
Q psy7191         154 NNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       154 ~~~~~VDGILfDLGvSS~  171 (413)
                         +.+|.||+|..||..
T Consensus       174 ---~~FD~Il~DaPCSg~  188 (456)
T 3m4x_A          174 ---GFFDRIVVDAPCSGE  188 (456)
T ss_dssp             ---TCEEEEEEECCCCCG
T ss_pred             ---ccCCEEEECCCCCCc
Confidence               369999999999853

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.50  E-value=2e-07  Score=90.73  Aligned_cols=87  Identities=14%  Similarity=0.189  Sum_probs=71.4

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      ..|. ++++..++|+++|.||.|.++++..+ .++|+|+|+++.+++.++++++.  ..++.++++++..+.. .     
T Consensus       112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~-~-----  184 (315)
T 1ixk_A          112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE-L-----  184 (315)
T ss_dssp             HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG-G-----
T ss_pred             HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc-c-----
Confidence            3444 78899999999999999999999985 58999999999999999887653  3479999998877643 1     


Q ss_pred             CCCCccEEEEcCCCCccC
Q psy7191         155 NFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~Q  172 (413)
                       .+.+|.|++|..||...
T Consensus       185 -~~~fD~Il~d~Pcsg~g  201 (315)
T 1ixk_A          185 -NVEFDKILLDAPCTGSG  201 (315)
T ss_dssp             -CCCEEEEEEECCTTSTT
T ss_pred             -cccCCEEEEeCCCCCcc
Confidence             13699999999887654

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.47  E-value=1.6e-07  Score=94.39  Aligned_cols=88  Identities=10%  Similarity=0.075  Sum_probs=70.5

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--------CCeEEEecCCCChHHH
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--------PRLVPVYGKFSDLPNI  148 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--------~rv~~i~~nFs~l~~~  148 (413)
                      +..|. ++||..++|+|.|.||.|.+|++..+++.|+|+|+++..+...+++++.+        .++.+.+.+...+...
T Consensus       141 ~~~L~-~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          141 VLALG-LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHHC-CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHHhC-CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            34455 89999999999999999999999877789999999999998877665421        2677887777666544


Q ss_pred             HHhcCCCCCCccEEEEcCCCCcc
Q psy7191         149 LKNMNNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGvSS~  171 (413)
                      .      .+.+|.||+|..||..
T Consensus       220 ~------~~~fD~VLlDaPCSg~  236 (359)
T 4fzv_A          220 E------GDTYDRVLVDVPCTTD  236 (359)
T ss_dssp             S------TTCEEEEEEECCCCCH
T ss_pred             c------cccCCEEEECCccCCC
Confidence            3      2369999999999853

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.47  E-value=1.6e-07  Score=97.28  Aligned_cols=87  Identities=11%  Similarity=0.116  Sum_probs=70.8

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ..|. ++++..++|+++|.||.|.+|++..++ ++|+|+|+++.+++.++++++..+ .+.+++++..++...+.     
T Consensus        95 ~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~-----  168 (464)
T 3m6w_A           95 VLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFG-----  168 (464)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHC-----
T ss_pred             HhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhcc-----
Confidence            3444 788999999999999999999999865 899999999999999988765432 38888887766654332     


Q ss_pred             CCCccEEEEcCCCCcc
Q psy7191         156 FNSIDGIIMDVGISDS  171 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~  171 (413)
                       +.+|.||+|..||..
T Consensus       169 -~~FD~Il~D~PcSg~  183 (464)
T 3m6w_A          169 -TYFHRVLLDAPCSGE  183 (464)
T ss_dssp             -SCEEEEEEECCCCCG
T ss_pred             -ccCCEEEECCCcCCc
Confidence             369999999999854

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.46  E-value=3.4e-07  Score=94.86  Aligned_cols=87  Identities=10%  Similarity=0.093  Sum_probs=72.5

Q ss_pred             hccCCCC--CCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhc
Q psy7191          78 SGLNDSS--DDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        78 ~~L~~~~--~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ..|. +.  ++..++|+++|.||.|..|++..+ .++|+|+|+++.+++.++++++..  .++.+++++...+...+.  
T Consensus       109 ~~L~-~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~--  185 (479)
T 2frx_A          109 AALF-ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP--  185 (479)
T ss_dssp             HHHT-TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHST--
T ss_pred             HHhC-cccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhcc--
Confidence            3454 66  899999999999999999999985 589999999999999998876543  479999999988764332  


Q ss_pred             CCCCCCccEEEEcCCCCcc
Q psy7191         153 NNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       153 ~~~~~~VDGILfDLGvSS~  171 (413)
                          +.+|.||+|..||..
T Consensus       186 ----~~fD~Il~D~PcSg~  200 (479)
T 2frx_A          186 ----EMFDAILLDAPCSGE  200 (479)
T ss_dssp             ----TCEEEEEEECCCCCG
T ss_pred             ----ccCCEEEECCCcCCc
Confidence                369999999999864

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.43  E-value=5e-07  Score=79.75  Aligned_cols=104  Identities=20%  Similarity=0.258  Sum_probs=84.8

Q ss_pred             HHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-
Q psy7191          54 LASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-  132 (413)
Q Consensus        54 ~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-  132 (413)
                      +....++....|...+|.+.+.+++.+. ..++ .++|..+|.|..+..+++. +.++|+|+|.++.+++.|++++... 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~   90 (219)
T 3dlc_A           14 AKNMDEISKTLFAPIYPIIAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADAN   90 (219)
T ss_dssp             HHHHHHHHHTTTTTHHHHHHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHhhccccHHHHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhcc
Confidence            4455667778888999999999999986 5655 9999999999999999988 7789999999999999998875432 


Q ss_pred             --CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         133 --PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       133 --~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                        ++++++++++.+++       +..+.+|.|+....
T Consensus        91 ~~~~~~~~~~d~~~~~-------~~~~~~D~v~~~~~  120 (219)
T 3dlc_A           91 LNDRIQIVQGDVHNIP-------IEDNYADLIVSRGS  120 (219)
T ss_dssp             CTTTEEEEECBTTBCS-------SCTTCEEEEEEESC
T ss_pred             ccCceEEEEcCHHHCC-------CCcccccEEEECch
Confidence              38999999987753       22357999997653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.43  E-value=2.8e-07  Score=93.96  Aligned_cols=90  Identities=20%  Similarity=0.271  Sum_probs=72.5

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +..|. ++++..++|+++|.||.|..+++..++ ++|+|+|+++.+++.++++++..  .++.++++++..+...     
T Consensus       252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-----  325 (450)
T 2yxl_A          252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-----  325 (450)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-----
T ss_pred             HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-----
Confidence            33444 788999999999999999999999876 89999999999999998876543  3799999988765321     


Q ss_pred             CCCCCccEEEEcCCCCccC
Q psy7191         154 NNFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       154 ~~~~~VDGILfDLGvSS~Q  172 (413)
                      +..+.+|.||+|..||..-
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g  344 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSG  344 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGG
T ss_pred             hccCCCCEEEEcCCCCCCe
Confidence            1124699999999997643

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.39  E-value=5.1e-07  Score=81.43  Aligned_cols=84  Identities=14%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|..+|.|+++..+++.+| +++|+|+|+++.+++.|+++++.  .. ++++++++..+....+...+  ...
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~--~~~  133 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEK--YEP  133 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT--CCC
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC--CCC
Confidence            44678999999999999999999987 78999999999999999887653  33 79999998754433332211  135


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|++|...
T Consensus       134 fD~v~~d~~~  143 (223)
T 3duw_A          134 FDFIFIDADK  143 (223)
T ss_dssp             CSEEEECSCG
T ss_pred             cCEEEEcCCc
Confidence            9999988654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.31  E-value=2.7e-06  Score=77.05  Aligned_cols=97  Identities=10%  Similarity=0.151  Sum_probs=74.5

Q ss_pred             CCccccchHhH---HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC
Q psy7191          66 NKKYPRTFQTS---ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK  141 (413)
Q Consensus        66 ~~H~pvll~ev---i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n  141 (413)
                      ....+.+...+   ++.+. +.++..++|+.+|.|..+..+++.+ |.++|+|+|.++.+++.++++.+..+++++++++
T Consensus        52 ~p~~~~~~~~i~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d  130 (227)
T 1g8a_A           52 NPNRSKLGAAIMNGLKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD  130 (227)
T ss_dssp             CTTTCHHHHHHHTTCCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECC
T ss_pred             CCCchhHHHHHHhhHHhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEcc
Confidence            44557777777   44443 6788999999999999999999886 5689999999999999888776554689999999


Q ss_pred             CCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      +.+...+. .  . ...+|.|+.|..
T Consensus       131 ~~~~~~~~-~--~-~~~~D~v~~~~~  152 (227)
T 1g8a_A          131 ATKPEEYR-A--L-VPKVDVIFEDVA  152 (227)
T ss_dssp             TTCGGGGT-T--T-CCCEEEEEECCC
T ss_pred             CCCcchhh-c--c-cCCceEEEECCC
Confidence            88753221 1  1 136999997754

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.30  E-value=1.2e-06  Score=80.60  Aligned_cols=96  Identities=11%  Similarity=0.098  Sum_probs=71.9

Q ss_pred             ccccchHhHHhcc---CCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecC
Q psy7191          68 KYPRTFQTSASGL---NDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGK  141 (413)
Q Consensus        68 H~pvll~evi~~L---~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~n  141 (413)
                      ++|.+-.++...|   ....++..++|..+|.|..+..+++..|.++|+|+|+++.+++.|+++++..  . ++.+++++
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d  130 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGN  130 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECC
Confidence            4566555443333   2245678999999999999999998778899999999999999999876532  3 89999999


Q ss_pred             CCChHH-HHHhcCCCCCCccEEEEcCCCC
Q psy7191         142 FSDLPN-ILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       142 Fs~l~~-~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +.+... .+      .+.+|.|++|...+
T Consensus       131 ~~~~~~~~~------~~~fD~V~~~~~~~  153 (232)
T 3ntv_A          131 ALEQFENVN------DKVYDMIFIDAAKA  153 (232)
T ss_dssp             GGGCHHHHT------TSCEEEEEEETTSS
T ss_pred             HHHHHHhhc------cCCccEEEEcCcHH
Confidence            865422 22      13699999886543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.29  E-value=2.9e-07  Score=81.07  Aligned_cols=95  Identities=14%  Similarity=0.029  Sum_probs=57.3

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL  149 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L  149 (413)
                      .+++.+++.+....++..++|..+|.|..+..+++..|+++|+|+|+++.+++.|+++....+ ++.++++++.+   .+
T Consensus        16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~   92 (215)
T 4dzr_A           16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE---WL   92 (215)
T ss_dssp             HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH---HH
T ss_pred             HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh---hh
Confidence            356667777752267889999999999999999999888899999999999999988765433 67777766543   23


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                      .......+.+|.|+.|..|
T Consensus        93 ~~~~~~~~~fD~i~~npp~  111 (215)
T 4dzr_A           93 IERAERGRPWHAIVSNPPY  111 (215)
T ss_dssp             HHHHHTTCCBSEEEECCCC
T ss_pred             hhhhhccCcccEEEECCCC
Confidence            2200012479999988776

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.28  E-value=3.3e-06  Score=83.13  Aligned_cols=100  Identities=8%  Similarity=0.006  Sum_probs=77.7

Q ss_pred             Hhhhhhcc-CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCC
Q psy7191          58 KRLSEDIY-NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPR  134 (413)
Q Consensus        58 ~~~~~n~y-~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~r  134 (413)
                      ..+..-.| .+++|+.-.|. ..+. ++++..++|.-+|.||-|..++.+.++++|+|+|+|+++++.|+++.+.  ..+
T Consensus        96 ~~l~~fpy~~~~~~l~~~E~-~la~-l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~  173 (298)
T 3fpf_A           96 ETLRSFYFYPRYLELLKNEA-ALGR-FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG  173 (298)
T ss_dssp             HHHHTSTTHHHHHHHHHHHH-HHTT-CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCS
T ss_pred             HhhccCCCcccHHHHHHHHH-HHcC-CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCC
Confidence            34444444 44555555554 5555 8999999999999999999988888889999999999999999987653  358


Q ss_pred             eEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       135 v~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++++++..+++         .+.+|.|+.+.++
T Consensus       174 v~~v~gDa~~l~---------d~~FDvV~~~a~~  198 (298)
T 3fpf_A          174 VNVITGDETVID---------GLEFDVLMVAALA  198 (298)
T ss_dssp             EEEEESCGGGGG---------GCCCSEEEECTTC
T ss_pred             eEEEECchhhCC---------CCCcCEEEECCCc
Confidence            999999987653         1369999987664

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.25  E-value=2.5e-06  Score=74.03  Aligned_cols=99  Identities=8%  Similarity=0.087  Sum_probs=69.9

Q ss_pred             hccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEe
Q psy7191          63 DIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVY  139 (413)
Q Consensus        63 n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~  139 (413)
                      ..++.-...+.+.+++.+....++..++|..+|.|+.+..+++. +..+|+|+|.++.+++.|+++.+..   +++.+++
T Consensus         9 ~~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   87 (177)
T 2esr_A            9 KITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK   87 (177)
T ss_dssp             ---------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC
T ss_pred             CCCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE
Confidence            34555556677777777753457889999999999999998877 6679999999999999999876554   2799998


Q ss_pred             cCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         140 GKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       140 ~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++.+   ++....   ..+|.|+.|..+
T Consensus        88 ~d~~~---~~~~~~---~~fD~i~~~~~~  110 (177)
T 2esr_A           88 MEAER---AIDCLT---GRFDLVFLDPPY  110 (177)
T ss_dssp             SCHHH---HHHHBC---SCEEEEEECCSS
T ss_pred             CcHHH---hHHhhc---CCCCEEEECCCC
Confidence            87654   333221   359999977543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.25  E-value=5.9e-06  Score=77.73  Aligned_cols=85  Identities=13%  Similarity=0.126  Sum_probs=68.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---C--C-CeEEEecCCCChH-HHHHhcCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---D--P-RLVPVYGKFSDLP-NILKNMNNN  155 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---~--~-rv~~i~~nFs~l~-~~L~~~~~~  155 (413)
                      ..++..++|..+|.|..+..++.+.|..+|+|+|+|+.+++.|+++.+.   .  . ++.++++++.++. ..+.+ .+.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~-~~~  112 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA-GLP  112 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT-TCC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh-ccC
Confidence            5577899999999999999999998889999999999999999987654   3  2 7999999998873 22221 223


Q ss_pred             CCCccEEEEcCCC
Q psy7191         156 FNSIDGIIMDVGI  168 (413)
Q Consensus       156 ~~~VDGILfDLGv  168 (413)
                      .+.+|.|+.|..|
T Consensus       113 ~~~fD~Vv~nPPy  125 (260)
T 2ozv_A          113 DEHFHHVIMNPPY  125 (260)
T ss_dssp             TTCEEEEEECCCC
T ss_pred             CCCcCEEEECCCC
Confidence            3579999988665

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.24  E-value=5.8e-06  Score=75.61  Aligned_cols=89  Identities=9%  Similarity=0.110  Sum_probs=69.5

Q ss_pred             cchHhH---HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH
Q psy7191          71 RTFQTS---ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN  147 (413)
Q Consensus        71 vll~ev---i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~  147 (413)
                      -++..+   ++.+. +.++..++|..+|.|..+..+++..|.++|+|+|.++.+++.++++.+..+++.+++++..+...
T Consensus        58 ~~~~~i~~~l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~  136 (230)
T 1fbn_A           58 KLAAAIIKGLKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQE  136 (230)
T ss_dssp             HHHHHHHTTCCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGG
T ss_pred             HHHHHHHhcccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccc
Confidence            344566   55554 67889999999999999999999888889999999999999998876554689999999887433


Q ss_pred             HHHhcCCCCCCccEEEE
Q psy7191         148 ILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILf  164 (413)
                      ++.   +. +.+|.|+.
T Consensus       137 ~~~---~~-~~~D~v~~  149 (230)
T 1fbn_A          137 YAN---IV-EKVDVIYE  149 (230)
T ss_dssp             GTT---TS-CCEEEEEE
T ss_pred             ccc---cC-ccEEEEEE
Confidence            221   22 46999983

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.24  E-value=3.5e-06  Score=80.41  Aligned_cols=99  Identities=8%  Similarity=0.167  Sum_probs=75.8

Q ss_pred             hccCCccc---cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191          63 DIYNKKYP---RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY  139 (413)
Q Consensus        63 n~y~~H~p---vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~  139 (413)
                      -.|+||+-   -+++.+++.+. +.++..++|..+|.|..|..+++..  ++|+|+|+|+.+++.++++....+++++++
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~   81 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQ   81 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEE
T ss_pred             CcCCcccccCHHHHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEE
Confidence            35778774   48888999997 8889999999999999999999874  799999999999999998876556999999


Q ss_pred             cCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         140 GKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       140 ~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++..++  +.... ....+| |+.||.|
T Consensus        82 ~D~~~~~--~~~~~-~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           82 NDALQFD--FSSVK-TDKPLR-VVGNLPY  106 (255)
T ss_dssp             SCTTTCC--GGGSC-CSSCEE-EEEECCH
T ss_pred             cchHhCC--HHHhc-cCCCeE-EEecCCc
Confidence            9998764  22210 012455 7777776

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.22  E-value=4.4e-06  Score=79.26  Aligned_cols=87  Identities=11%  Similarity=0.175  Sum_probs=70.5

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ++.|. ++||..++|.-+|+|..+..+.+.. |+|+|||+|.++.+++.++++.+..+++..+..+......+..    .
T Consensus        70 l~~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~----~  144 (233)
T 4df3_A           70 LIELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRH----L  144 (233)
T ss_dssp             CSCCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTT----T
T ss_pred             hhhcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccccc----c
Confidence            34454 8999999999999999999998886 8899999999999999998877666689999988877654322    2


Q ss_pred             CCCccEEEEcCCC
Q psy7191         156 FNSIDGIIMDVGI  168 (413)
Q Consensus       156 ~~~VDGILfDLGv  168 (413)
                      ...||.|+.|+-.
T Consensus       145 ~~~vDvVf~d~~~  157 (233)
T 4df3_A          145 VEGVDGLYADVAQ  157 (233)
T ss_dssp             CCCEEEEEECCCC
T ss_pred             cceEEEEEEeccC
Confidence            3469999877643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.22  E-value=5.8e-06  Score=76.62  Aligned_cols=84  Identities=15%  Similarity=0.071  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|..+|.|+.+..+++.+| +++|+++|+++.+++.|+++++.  .. ++++++++..+.-..+...+...+.
T Consensus        68 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            34567999999999999999999987 79999999999999999887653  33 7999998865432223222211246


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|++|.
T Consensus       148 fD~I~~d~  155 (237)
T 3c3y_A          148 YDFGFVDA  155 (237)
T ss_dssp             EEEEEECS
T ss_pred             cCEEEECC
Confidence            99999874

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.22  E-value=3e-06  Score=77.88  Aligned_cols=90  Identities=12%  Similarity=0.051  Sum_probs=71.2

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCC
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSD  144 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~  144 (413)
                      +|-....++..+. +.++..++|+.+|.|+.+..+++. .|.++|+|+|.++.+++.|+++++.  .+ +++++++++.+
T Consensus        78 ~~~~~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           78 HPKDAALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             cHhHHHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            3445556666775 788999999999999999999999 5789999999999999999887643  23 69999998763


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCC
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      .        ++.+.+|.|++|++
T Consensus       157 ~--------~~~~~~D~v~~~~~  171 (255)
T 3mb5_A          157 G--------IEEENVDHVILDLP  171 (255)
T ss_dssp             C--------CCCCSEEEEEECSS
T ss_pred             c--------cCCCCcCEEEECCC
Confidence            2        22346999997643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.21  E-value=5.5e-06  Score=72.99  Aligned_cols=110  Identities=11%  Similarity=0.012  Sum_probs=78.3

Q ss_pred             hhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHH
Q psy7191          45 EEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEK  124 (413)
Q Consensus        45 ~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~  124 (413)
                      .+.+.|++.|..-.....-.+...++.+.+.+...+   .++..++|..+|.|..+..+++..+. +|+|+|.++.+++.
T Consensus         5 ~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~   80 (215)
T 2pxx_A            5 REVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPEL---RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAA   80 (215)
T ss_dssp             GCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGC---CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHH
T ss_pred             cchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhc---CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHH
Confidence            456688888876542222234445555444444443   46789999999999999999887543 89999999999999


Q ss_pred             HHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191         125 AKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       125 Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      ++++....+++.++++++.+++       +..+.+|.|+.+
T Consensus        81 a~~~~~~~~~i~~~~~d~~~~~-------~~~~~fD~v~~~  114 (215)
T 2pxx_A           81 MQACYAHVPQLRWETMDVRKLD-------FPSASFDVVLEK  114 (215)
T ss_dssp             HHHHTTTCTTCEEEECCTTSCC-------SCSSCEEEEEEE
T ss_pred             HHHhcccCCCcEEEEcchhcCC-------CCCCcccEEEEC
Confidence            9987765458899998887652       223468888854

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.20  E-value=3.1e-06  Score=75.39  Aligned_cols=85  Identities=14%  Similarity=0.145  Sum_probs=67.4

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhc
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      .+++.+. +.++..++|..+|.|..+..+++..|.++|+|+|+++.+++.|+++.+.  .+++.++++++.+..   .. 
T Consensus        31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~-  105 (204)
T 3e05_A           31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL---DD-  105 (204)
T ss_dssp             HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC---TT-
T ss_pred             HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh---hc-
Confidence            3455665 7889999999999999999999998889999999999999999886543  358999999875431   11 


Q ss_pred             CCCCCCccEEEEcCC
Q psy7191         153 NNNFNSIDGIIMDVG  167 (413)
Q Consensus       153 ~~~~~~VDGILfDLG  167 (413)
                         ...+|.|+.+.+
T Consensus       106 ---~~~~D~i~~~~~  117 (204)
T 3e05_A          106 ---LPDPDRVFIGGS  117 (204)
T ss_dssp             ---SCCCSEEEESCC
T ss_pred             ---CCCCCEEEECCC
Confidence               135899997643

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.20  E-value=4e-06  Score=76.66  Aligned_cols=91  Identities=14%  Similarity=0.228  Sum_probs=72.1

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCC
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFS  143 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs  143 (413)
                      .+|-....+++.+. +.++..++|+.+|.|..+..+++.+ |.++|+|+|.++.+++.|+++++..   +++.++++++.
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~  158 (258)
T 2pwy_A           80 TYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE  158 (258)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG
T ss_pred             ccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchh
Confidence            44555567777776 8899999999999999999999984 6799999999999999998875432   48999998876


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcC
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      +.       .++.+.+|.|++|+
T Consensus       159 ~~-------~~~~~~~D~v~~~~  174 (258)
T 2pwy_A          159 EA-------ELEEAAYDGVALDL  174 (258)
T ss_dssp             GC-------CCCTTCEEEEEEES
T ss_pred             hc-------CCCCCCcCEEEECC
Confidence            43       12234699999753

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.19  E-value=6e-06  Score=78.10  Aligned_cols=101  Identities=14%  Similarity=0.162  Sum_probs=76.3

Q ss_pred             cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC----CCeEEEe
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND----PRLVPVY  139 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~----~rv~~i~  139 (413)
                      |..++|--+-+.+..+. ..++..++|+.||.|..+..+++.+ +..+|+|+|.++.+++.|+++.+..    +++++++
T Consensus        17 ~rp~y~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~   95 (299)
T 3g5t_A           17 SRPSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI   95 (299)
T ss_dssp             HSCCCCHHHHHHHHHHC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEE
T ss_pred             cCCCCCHHHHHHHHHHh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEE
Confidence            45666655555555554 4678999999999999999999987 7899999999999999998876432    4899999


Q ss_pred             cCCCChHHHHHh-cCCCCCCccEEEEcCCC
Q psy7191         140 GKFSDLPNILKN-MNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       140 ~nFs~l~~~L~~-~~~~~~~VDGILfDLGv  168 (413)
                      +++.++.  +.. ..+..+.+|.|+....+
T Consensus        96 ~d~~~~~--~~~~~~~~~~~fD~V~~~~~l  123 (299)
T 3g5t_A           96 SSSDDFK--FLGADSVDKQKIDMITAVECA  123 (299)
T ss_dssp             CCTTCCG--GGCTTTTTSSCEEEEEEESCG
T ss_pred             cCHHhCC--ccccccccCCCeeEEeHhhHH
Confidence            9998875  211 11222579999976543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.19  E-value=4.3e-06  Score=76.18  Aligned_cols=77  Identities=10%  Similarity=0.161  Sum_probs=63.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|..||.|.++..+++..|+..|+|+|+++.+++.|+++.+.  .+++.+++++..++..++.     .+.+|.
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~-----~~~~d~  111 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-----PGEVKR  111 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-----TTSCCE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-----cCCcCE
Confidence            467899999999999999999999999999999999999999886543  3489999999887655432     246898


Q ss_pred             EEEc
Q psy7191         162 IIMD  165 (413)
Q Consensus       162 ILfD  165 (413)
                      |+++
T Consensus       112 v~~~  115 (213)
T 2fca_A          112 VYLN  115 (213)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8754

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.18  E-value=1.2e-05  Score=72.71  Aligned_cols=87  Identities=14%  Similarity=0.217  Sum_probs=71.3

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHh
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~  151 (413)
                      +.+.+++.+....++..++|..+|.|..+..+++..|.++|+|+|.++.+++.|+++....+++.++++++.++.     
T Consensus        31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-----  105 (234)
T 3dtn_A           31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-----  105 (234)
T ss_dssp             HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-----
T ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-----
Confidence            345566666435677899999999999999999999989999999999999999988765558999999987753     


Q ss_pred             cCCCCCCccEEEEcC
Q psy7191         152 MNNNFNSIDGIIMDV  166 (413)
Q Consensus       152 ~~~~~~~VDGILfDL  166 (413)
                        .. +.+|.|+...
T Consensus       106 --~~-~~fD~v~~~~  117 (234)
T 3dtn_A          106 --FE-EKYDMVVSAL  117 (234)
T ss_dssp             --CC-SCEEEEEEES
T ss_pred             --CC-CCceEEEEeC
Confidence              11 4799999774

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.18  E-value=6.6e-06  Score=76.76  Aligned_cols=77  Identities=10%  Similarity=0.121  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--------CCCCeEEEecCCCC-hHHHHHhcC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--------NDPRLVPVYGKFSD-LPNILKNMN  153 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--------~~~rv~~i~~nFs~-l~~~L~~~~  153 (413)
                      ..++..++|..||.|+++..+++..|+..|+|+|+++.+++.|+++++        ...++.+++++... ++.++.   
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~---  120 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFY---  120 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCC---
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCC---
Confidence            345679999999999999999999899999999999999999876532        23489999999876 655543   


Q ss_pred             CCCCCccEEEE
Q psy7191         154 NNFNSIDGIIM  164 (413)
Q Consensus       154 ~~~~~VDGILf  164 (413)
                        .+.+|.|++
T Consensus       121 --~~~~D~v~~  129 (235)
T 3ckk_A          121 --KGQLTKMFF  129 (235)
T ss_dssp             --TTCEEEEEE
T ss_pred             --CcCeeEEEE
Confidence              246899875

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.17  E-value=3.7e-06  Score=86.69  Aligned_cols=133  Identities=13%  Similarity=0.150  Sum_probs=96.9

Q ss_pred             cccccCccHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecC
Q psy7191          16 LEEHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYG   95 (413)
Q Consensus        16 ~~~~~grdl~~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG   95 (413)
                      +-.+..++|-++|=+++=.--.       .+++.+    ++-+.-.+++|++..|-++.++++.+. +.+++.++|..+|
T Consensus       116 ~~~~~~~~~~~~Il~~~Y~r~V-------~~~~~L----~~Ye~Fs~~vYGEt~~~~i~~il~~l~-l~~gd~VLDLGCG  183 (438)
T 3uwp_A          116 LNTRPSTGLLRHILQQVYNHSV-------TDPEKL----NNYEPFSPEVYGETSFDLVAQMIDEIK-MTDDDLFVDLGSG  183 (438)
T ss_dssp             CSBCCCHHHHHHHHHHHHHHHC-------SCGGGS----CCCSSSCGGGGGGTHHHHHHHHHHHHC-CCTTCEEEEESCT
T ss_pred             ccCCCCHHHHHHHHHHHHhhcC-------CCHHHh----cCcccCCCcccCCCCHHHHHHHHHhcC-CCCCCEEEEeCCC
Confidence            3346667776666665543222       133222    223455678999999999999999997 8999999999999


Q ss_pred             CchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc---------C--CCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          96 DGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA---------N--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        96 ~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~---------~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      .|..+..+....+..+|+|+|+++.+++.|+++.+         .  ..++.+++++|.+++-- ...    ..+|.|+.
T Consensus       184 tG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~-d~~----~~aDVVf~  258 (438)
T 3uwp_A          184 VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWR-ERI----ANTSVIFV  258 (438)
T ss_dssp             TSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHH-HHH----HTCSEEEE
T ss_pred             CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccc-ccc----CCccEEEE
Confidence            99999998877776689999999999999876431         1  24899999999987632 111    14777776


Q ss_pred             c
Q psy7191         165 D  165 (413)
Q Consensus       165 D  165 (413)
                      +
T Consensus       259 N  259 (438)
T 3uwp_A          259 N  259 (438)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.17  E-value=9.2e-06  Score=76.50  Aligned_cols=87  Identities=16%  Similarity=0.221  Sum_probs=64.4

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHh-cCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCCh
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN-IGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDL  145 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~-~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l  145 (413)
                      |.....+++.+. +.++..++|+.+|.|+.+..+++. .|.++|+|+|.++.+++.|+++++..   +++.++++++.+.
T Consensus        96 ~~~~~~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~  174 (275)
T 1yb2_A           96 EIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF  174 (275)
T ss_dssp             ----------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC
T ss_pred             hhhHHHHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc
Confidence            334456666675 788999999999999999999998 47899999999999999999877654   4899999988651


Q ss_pred             HHHHHhcCCCCCCccEEEEc
Q psy7191         146 PNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfD  165 (413)
                         +     +.+.+|.|+.|
T Consensus       175 ---~-----~~~~fD~Vi~~  186 (275)
T 1yb2_A          175 ---I-----SDQMYDAVIAD  186 (275)
T ss_dssp             ---C-----CSCCEEEEEEC
T ss_pred             ---C-----cCCCccEEEEc
Confidence               1     22469999974

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.16  E-value=1.2e-05  Score=71.32  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             ccchHhHHhccCCCC---CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCC
Q psy7191          70 PRTFQTSASGLNDSS---DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSD  144 (413)
Q Consensus        70 pvll~evi~~L~~~~---~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~  144 (413)
                      ..+.+.+++.+. ..   ++..++|..+|.|..+..++...|.++|+|+|.++.+++.++++....  ++++++++++.+
T Consensus        48 ~~~~~~~~~~l~-~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~  126 (207)
T 1jsx_A           48 EMLVRHILDSIV-VAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEE  126 (207)
T ss_dssp             CHHHHHHHHHHH-HGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTT
T ss_pred             HHHHHHHHhhhh-hhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhh
Confidence            345666777664 32   378999999999999999999888899999999999999998865433  369999998876


Q ss_pred             hHHHHHhcCCCCCCccEEEE
Q psy7191         145 LPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILf  164 (413)
                      +.        ..+.+|.|+.
T Consensus       127 ~~--------~~~~~D~i~~  138 (207)
T 1jsx_A          127 FP--------SEPPFDGVIS  138 (207)
T ss_dssp             SC--------CCSCEEEEEC
T ss_pred             CC--------ccCCcCEEEE
Confidence            42        1236898884

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.16  E-value=4.6e-06  Score=75.17  Aligned_cols=77  Identities=17%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|..+|.|..+..+++..|++.|+|+|+++.+++.|+++...  .+++.+++++..++...+.     .+.+|.
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~~D~  114 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-----DGEIDR  114 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-----TTCCSE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcC-----CCCCCE
Confidence            467899999999999999999999999999999999999999876543  3589999999887654332     246999


Q ss_pred             EEEc
Q psy7191         162 IIMD  165 (413)
Q Consensus       162 ILfD  165 (413)
                      |+++
T Consensus       115 i~~~  118 (214)
T 1yzh_A          115 LYLN  118 (214)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9966

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.16  E-value=7.4e-06  Score=78.07  Aligned_cols=66  Identities=18%  Similarity=0.205  Sum_probs=48.1

Q ss_pred             ccCCccccchHhHHhccCCCC--CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          64 IYNKKYPRTFQTSASGLNDSS--DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        64 ~y~~H~pvll~evi~~L~~~~--~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      +|....|-+.+..+..|. +.  ++..++|.-||.|..+..|++.++..+|+|+|+|+.+++.|++++.
T Consensus        24 yy~~r~~~~~~~~l~~l~-~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~   91 (292)
T 3g07_A           24 YYGYRNPSCEDGRLRVLK-PEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR   91 (292)
T ss_dssp             ----------CGGGGTSC-GGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-
T ss_pred             hccccCCcchhHHHHhhh-hhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH
Confidence            444444546666677764 33  6789999999999999999999988899999999999999988654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.16  E-value=4.4e-06  Score=72.41  Aligned_cols=99  Identities=12%  Similarity=0.093  Sum_probs=71.4

Q ss_pred             CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCC
Q psy7191          66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKF  142 (413)
Q Consensus        66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nF  142 (413)
                      ..-.+.+.+.+++.+....++..++|..+|.|+.+..+++. +..+|+|+|.++.+++.|+++.+.  . ++++++++++
T Consensus        25 rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~  103 (187)
T 2fhp_A           25 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA  103 (187)
T ss_dssp             CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             CcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcH
Confidence            33344556666666642357889999999999999988874 567999999999999999876543  2 3799999987


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+....+...   .+.+|.|++|..+
T Consensus       104 ~~~~~~~~~~---~~~fD~i~~~~~~  126 (187)
T 2fhp_A          104 NRALEQFYEE---KLQFDLVLLDPPY  126 (187)
T ss_dssp             HHHHHHHHHT---TCCEEEEEECCCG
T ss_pred             HHHHHHHHhc---CCCCCEEEECCCC
Confidence            6543322211   2369999987554

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.14  E-value=4.7e-06  Score=80.57  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=70.0

Q ss_pred             hhccCCccc---cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CCCCeE
Q psy7191          62 EDIYNKKYP---RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--NDPRLV  136 (413)
Q Consensus        62 ~n~y~~H~p---vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~~rv~  136 (413)
                      ...|++|+.   -+++.+++.+. +.++..++|..+|.|+.|..+++.  .++|+|+|+|+.+++.++++.+  ..++++
T Consensus        17 ~k~~Gq~fl~~~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~   93 (299)
T 2h1r_A           17 LYFQGQHLLKNPGILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLE   93 (299)
T ss_dssp             ------CEECCHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEE
T ss_pred             hhccccceecCHHHHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceE
Confidence            345677764   47788888886 788899999999999999999876  4699999999999999988753  235899


Q ss_pred             EEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         137 PVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       137 ~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      ++++++..++         ...+|.|+.|+.|+
T Consensus        94 ~~~~D~~~~~---------~~~~D~Vv~n~py~  117 (299)
T 2h1r_A           94 VYEGDAIKTV---------FPKFDVCTANIPYK  117 (299)
T ss_dssp             C----CCSSC---------CCCCSEEEEECCGG
T ss_pred             EEECchhhCC---------cccCCEEEEcCCcc
Confidence            9999887642         12689999998764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.14  E-value=2.1e-06  Score=80.04  Aligned_cols=89  Identities=13%  Similarity=0.129  Sum_probs=67.4

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHH
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~  150 (413)
                      ..+..|....++..++|..+|.|+.+..+++.+| .++|+|+|+++.+++.|+++++.  .. +++++.++..+   .+.
T Consensus        53 ~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~---~l~  129 (248)
T 3tfw_A           53 QFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ---SLE  129 (248)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH---HHH
T ss_pred             HHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH---HHH
Confidence            3344442245678999999999999999999987 79999999999999999887653  33 89999887643   344


Q ss_pred             hcCCCCCCccEEEEcCC
Q psy7191         151 NMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLG  167 (413)
                      ... ..+.+|.|++|..
T Consensus       130 ~~~-~~~~fD~V~~d~~  145 (248)
T 3tfw_A          130 SLG-ECPAFDLIFIDAD  145 (248)
T ss_dssp             TCC-SCCCCSEEEECSC
T ss_pred             hcC-CCCCeEEEEECCc
Confidence            332 1236999998864

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.14  E-value=5e-06  Score=74.85  Aligned_cols=92  Identities=16%  Similarity=0.035  Sum_probs=67.3

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHH
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~  150 (413)
                      +.+..+....++..++|+.+|.|+.|..+++.+| .++|+|+|+++.+++.|+++++..  . ++++++++..+....+.
T Consensus        54 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  133 (225)
T 3tr6_A           54 QLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELI  133 (225)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhh
Confidence            3444443244678999999999999999999887 799999999999999998876532  3 79999988644322232


Q ss_pred             hcCCCCCCccEEEEcCC
Q psy7191         151 NMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLG  167 (413)
                      ..+ ..+.+|.|++|..
T Consensus       134 ~~~-~~~~fD~v~~~~~  149 (225)
T 3tr6_A          134 HAG-QAWQYDLIYIDAD  149 (225)
T ss_dssp             TTT-CTTCEEEEEECSC
T ss_pred             hcc-CCCCccEEEECCC
Confidence            111 0146999997775

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.13  E-value=8.8e-06  Score=76.89  Aligned_cols=97  Identities=12%  Similarity=0.139  Sum_probs=68.3

Q ss_pred             CCccccchHhHHhccC--CCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCC
Q psy7191          66 NKKYPRTFQTSASGLN--DSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF  142 (413)
Q Consensus        66 ~~H~pvll~evi~~L~--~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nF  142 (413)
                      ....+-+-..++..|.  .+++|..++|+.+|.|+.|..+.+.. |.|+|+|+|.++.+++...+..+...++.+++++.
T Consensus        55 ~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da  134 (232)
T 3id6_C           55 NAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADA  134 (232)
T ss_dssp             CTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCT
T ss_pred             chHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccc
Confidence            3445555556666652  27889999999999999999999886 68999999999987643222111124799999988


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      .....+.   .+ .+.+|.|+.|+
T Consensus       135 ~~~~~~~---~~-~~~~D~I~~d~  154 (232)
T 3id6_C          135 RFPQSYK---SV-VENVDVLYVDI  154 (232)
T ss_dssp             TCGGGTT---TT-CCCEEEEEECC
T ss_pred             ccchhhh---cc-ccceEEEEecC
Confidence            7654321   11 24699999774

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.13  E-value=5.6e-06  Score=80.86  Aligned_cols=98  Identities=14%  Similarity=0.212  Sum_probs=77.4

Q ss_pred             hhccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEE
Q psy7191          62 EDIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPV  138 (413)
Q Consensus        62 ~n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i  138 (413)
                      +..|++|+   |-+++.+++.+. +.+++.++|.-+|.|.-|..+++.  ..+|+|+|+|+.+++.++++++..++++++
T Consensus        25 ~k~~GQnfL~d~~i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi  101 (295)
T 3gru_A           25 KKKLGQCFLIDKNFVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEII  101 (295)
T ss_dssp             -----CCEECCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEE
T ss_pred             ccccCccccCCHHHHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEE
Confidence            34567765   457788888886 888999999999999999999987  479999999999999998877655689999


Q ss_pred             ecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         139 YGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       139 ~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      ++++..++  +..     ..+|.|+.|+.|.
T Consensus       102 ~gD~l~~~--~~~-----~~fD~Iv~NlPy~  125 (295)
T 3gru_A          102 WGDALKVD--LNK-----LDFNKVVANLPYQ  125 (295)
T ss_dssp             ESCTTTSC--GGG-----SCCSEEEEECCGG
T ss_pred             ECchhhCC--ccc-----CCccEEEEeCccc
Confidence            99998753  211     2489999999873

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.10  E-value=8e-06  Score=79.11  Aligned_cols=94  Identities=15%  Similarity=0.229  Sum_probs=73.2

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC-------------CC
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN-------------DP  133 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~-------------~~  133 (413)
                      .+|-....+++.+. +.++..++|+.+|.|+.+..+++.. |.++|+|+|+++.+++.|+++++.             ..
T Consensus        89 ~~~~~~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~  167 (336)
T 2b25_A           89 TFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  167 (336)
T ss_dssp             CCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             cCHHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence            56666777888886 8899999999999999999999985 679999999999999999886542             24


Q ss_pred             CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         134 RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       134 rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ++++++++..++..-+.     .+.+|.|++|.+
T Consensus       168 ~v~~~~~d~~~~~~~~~-----~~~fD~V~~~~~  196 (336)
T 2b25_A          168 NVDFIHKDISGATEDIK-----SLTFDAVALDML  196 (336)
T ss_dssp             CEEEEESCTTCCC------------EEEEEECSS
T ss_pred             ceEEEECChHHcccccC-----CCCeeEEEECCC
Confidence            89999999876532121     236999998753

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.10  E-value=1.2e-05  Score=69.07  Aligned_cols=87  Identities=20%  Similarity=0.247  Sum_probs=65.9

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~  150 (413)
                      ..+++.+. +.++..++|..+|.|..+..+++.+|.++|+|+|+++.+++.|++++...  + ++ +++++..+   .+.
T Consensus        15 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~---~~~   89 (178)
T 3hm2_A           15 ALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR---AFD   89 (178)
T ss_dssp             HHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG---GGG
T ss_pred             HHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh---hhh
Confidence            44556665 77889999999999999999999988899999999999999999876543  3 78 77776532   232


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                      ..   .+.+|.|+.+.+.
T Consensus        90 ~~---~~~~D~i~~~~~~  104 (178)
T 3hm2_A           90 DV---PDNPDVIFIGGGL  104 (178)
T ss_dssp             GC---CSCCSEEEECC-T
T ss_pred             cc---CCCCCEEEECCcc
Confidence            21   1469999965443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.09  E-value=7.3e-06  Score=70.20  Aligned_cols=87  Identities=20%  Similarity=0.161  Sum_probs=67.4

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~  147 (413)
                      +.+...+++.+. ..++..++|..+|.|..+..+++  +..+|+|+|.++.+++.++++.+..  +++.++++++.+   
T Consensus        21 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---   94 (183)
T 2yxd_A           21 EEIRAVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---   94 (183)
T ss_dssp             HHHHHHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---
T ss_pred             HHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---
Confidence            445556666665 77888999999999999999987  6789999999999999998876543  478999887653   


Q ss_pred             HHHhcCCCCCCccEEEEcCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLG  167 (413)
                      .+..     +.+|.|+.+..
T Consensus        95 ~~~~-----~~~D~i~~~~~  109 (183)
T 2yxd_A           95 VLDK-----LEFNKAFIGGT  109 (183)
T ss_dssp             HGGG-----CCCSEEEECSC
T ss_pred             cccC-----CCCcEEEECCc
Confidence            3332     36899997643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.09  E-value=7.3e-06  Score=74.63  Aligned_cols=83  Identities=13%  Similarity=0.282  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      ..++..++|..+|.|+.+..+++.+|.++|+|+|+++.+++.|+++++..   +++.++++++.+....+..    .+.+
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----~~~f  127 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL----YPLF  127 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT----SCCE
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc----CCCc
Confidence            45788999999999999999999998899999999999999998876532   3799999987663222210    1369


Q ss_pred             cEEEEcCCCC
Q psy7191         160 DGIIMDVGIS  169 (413)
Q Consensus       160 DGILfDLGvS  169 (413)
                      |.|++|.+++
T Consensus       128 D~I~~~~~~~  137 (233)
T 2gpy_A          128 DVLFIDAAKG  137 (233)
T ss_dssp             EEEEEEGGGS
T ss_pred             cEEEECCCHH
Confidence            9999988764

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.09  E-value=1.4e-05  Score=75.79  Aligned_cols=75  Identities=16%  Similarity=0.276  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFN  157 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~  157 (413)
                      ++||..++|..||.|..+..+++.+  |+++|+|+|.++.+++.|+++++.+.   +++++++++.+++         .+
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~---------~~  138 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA---------IE  138 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC---------CC
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc---------cc
Confidence            4789999999999999999999986  46799999999999999998876542   8999999987642         23


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|+...
T Consensus       139 ~~d~v~~~~  147 (261)
T 4gek_A          139 NASMVVLNF  147 (261)
T ss_dssp             SEEEEEEES
T ss_pred             ccccceeee
Confidence            689988754

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.08  E-value=9e-06  Score=73.40  Aligned_cols=79  Identities=15%  Similarity=0.099  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEecC-CchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYG-DGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG-~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .++++.++|..+| .|..+..+++.. .++|+|+|+|+.+++.|+++.+..+ ++.+++++...+..+      ..+.+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD  125 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGV------VEGTFD  125 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTT------CCSCEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhc------ccCcee
Confidence            5688999999999 999999988876 6799999999999999988765444 899999996543221      124799


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|+.|..|
T Consensus       126 ~I~~npp~  133 (230)
T 3evz_A          126 VIFSAPPY  133 (230)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99988666

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.07  E-value=8e-06  Score=76.06  Aligned_cols=91  Identities=16%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             ccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC-----CCeEEEecC
Q psy7191          68 KYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND-----PRLVPVYGK  141 (413)
Q Consensus        68 H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~-----~rv~~i~~n  141 (413)
                      .+|-....+++.+. +.++..++|+.+|.|..+..+++.+ |.++|+|+|+++.+++.|+++++..     +++.+++++
T Consensus        83 ~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d  161 (280)
T 1i9g_A           83 IYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  161 (280)
T ss_dssp             CCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECc
Confidence            35666777888886 8899999999999999999999875 6799999999999999998875432     489999988


Q ss_pred             CCChHHHHHhcCCCCCCccEEEEcC
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      +.+..       +..+.+|.|++|+
T Consensus       162 ~~~~~-------~~~~~~D~v~~~~  179 (280)
T 1i9g_A          162 LADSE-------LPDGSVDRAVLDM  179 (280)
T ss_dssp             GGGCC-------CCTTCEEEEEEES
T ss_pred             hHhcC-------CCCCceeEEEECC
Confidence            76531       1234699999754

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.06  E-value=3.3e-05  Score=70.37  Aligned_cols=95  Identities=12%  Similarity=0.059  Sum_probs=76.1

Q ss_pred             hccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCC
Q psy7191          63 DIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF  142 (413)
Q Consensus        63 n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nF  142 (413)
                      +++...-+.+.+.+++.+. +.++..++|..+|.|..+..+++.+ .++|+|+|.++.+++.|+++....++++++++++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~  111 (266)
T 3ujc_A           34 NYISSGGLEATKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDI  111 (266)
T ss_dssp             TCCSTTHHHHHHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT
T ss_pred             CccccchHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc
Confidence            3444444556788888886 7888999999999999999999987 6799999999999999998765446899999998


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      .+++       .+.+.+|.|+...
T Consensus       112 ~~~~-------~~~~~fD~v~~~~  128 (266)
T 3ujc_A          112 LTKE-------FPENNFDLIYSRD  128 (266)
T ss_dssp             TTCC-------CCTTCEEEEEEES
T ss_pred             ccCC-------CCCCcEEEEeHHH
Confidence            7652       2235799999754

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.06  E-value=1.5e-05  Score=76.35  Aligned_cols=94  Identities=13%  Similarity=0.112  Sum_probs=74.9

Q ss_pred             ccCCccc---cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEE
Q psy7191          64 IYNKKYP---RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVP  137 (413)
Q Consensus        64 ~y~~H~p---vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~  137 (413)
                      .|++|+-   -+++.+++.+. +.++..++|..+|.|..|..+++..  .+|+|+|+|+.+++.++++.+..   +++++
T Consensus         5 ~~gq~fl~d~~i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~   81 (285)
T 1zq9_A            5 GIGQHILKNPLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQV   81 (285)
T ss_dssp             ---CCEECCHHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEE
T ss_pred             CCCcCccCCHHHHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence            4566653   47788888886 7888999999999999999999884  58999999999999998876543   38999


Q ss_pred             EecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       138 i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +++++..++       +  ..+|.|+.|+.|+
T Consensus        82 ~~~D~~~~~-------~--~~fD~vv~nlpy~  104 (285)
T 1zq9_A           82 LVGDVLKTD-------L--PFFDTCVANLPYQ  104 (285)
T ss_dssp             EESCTTTSC-------C--CCCSEEEEECCGG
T ss_pred             EEcceeccc-------c--hhhcEEEEecCcc
Confidence            999987642       2  2589999998874

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.06  E-value=2.1e-05  Score=72.89  Aligned_cols=94  Identities=19%  Similarity=0.215  Sum_probs=73.9

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCC
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFS  143 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs  143 (413)
                      .-.+-+...++..+..+.++..++|..+|.|..+..+++. +.++|+|+|.++.+++.|+++.+..   ++++++++++.
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  106 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMD  106 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChh
Confidence            3455566777777754678899999999999999999887 7789999999999999998876533   37999999997


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++       ...+.+|.|+....+
T Consensus       107 ~~~-------~~~~~fD~i~~~~~~  124 (267)
T 3kkz_A          107 DLP-------FRNEELDLIWSEGAI  124 (267)
T ss_dssp             SCC-------CCTTCEEEEEESSCG
T ss_pred             hCC-------CCCCCEEEEEEcCCc
Confidence            753       223579999976443

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.05  E-value=2.8e-06  Score=80.97  Aligned_cols=90  Identities=14%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCH-------HHHHHHHhhhcC--C-CCeEEEe
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDK-------ESFEKAKTLAAN--D-PRLVPVY  139 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~-------~Al~~Ak~ll~~--~-~rv~~i~  139 (413)
                      +.++.+++   . +.++..++|+|+|.|..|..+...  .++|+|+|+++       ++++.|+++.+.  . +++++++
T Consensus        72 ~~~l~~a~---~-~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~  145 (258)
T 2r6z_A           72 GELIAKAV---N-HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHF  145 (258)
T ss_dssp             -CHHHHHT---T-GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEE
T ss_pred             hHHHHHHh---C-cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEE
Confidence            45555555   2 456789999999999999888875  47899999999       999999875432  2 3699999


Q ss_pred             cCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         140 GKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       140 ~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++.++-..+...+   +.+|.|++|..+
T Consensus       146 ~d~~~~l~~~~~~~---~~fD~V~~dP~~  171 (258)
T 2r6z_A          146 GNAAEQMPALVKTQ---GKPDIVYLDPMY  171 (258)
T ss_dssp             SCHHHHHHHHHHHH---CCCSEEEECCCC
T ss_pred             CCHHHHHHhhhccC---CCccEEEECCCC
Confidence            98866433232100   259999998766

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.05  E-value=9.5e-06  Score=74.80  Aligned_cols=83  Identities=16%  Similarity=0.035  Sum_probs=63.5

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCC-hHHHHHhcCCCCCCcc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSD-LPNILKNMNNNFNSID  160 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~-l~~~L~~~~~~~~~VD  160 (413)
                      ++..++|..+|.|+.+..+++..|.++|+|+|+++.+++.|+++.+..  . ++++++++..+ +...+...+  .+.+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~--~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEES--EIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCC--SCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhccc--CCccc
Confidence            567999999999999999999888889999999999999998876532  3 69999998665 222221100  13699


Q ss_pred             EEEEcCCCC
Q psy7191         161 GIIMDVGIS  169 (413)
Q Consensus       161 GILfDLGvS  169 (413)
                      .|+.|..|-
T Consensus       143 ~i~~npp~~  151 (254)
T 2h00_A          143 FCMCNPPFF  151 (254)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCc
Confidence            999887663

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.05  E-value=5.2e-06  Score=73.22  Aligned_cols=79  Identities=14%  Similarity=0.155  Sum_probs=61.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|..+|.|+.+..+++. +..+|+|+|+|+.+++.|+++.+..  +++++++++..++   +...  ..+.+|.
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---~~~~--~~~~fD~  116 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAV---VAAG--TTSPVDL  116 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHH---HHHC--CSSCCSE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHH---Hhhc--cCCCccE
Confidence            46789999999999999988774 5578999999999999998876432  4899999887554   3222  1247999


Q ss_pred             EEEcCCC
Q psy7191         162 IIMDVGI  168 (413)
Q Consensus       162 ILfDLGv  168 (413)
                      |++|..+
T Consensus       117 i~~~~p~  123 (189)
T 3p9n_A          117 VLADPPY  123 (189)
T ss_dssp             EEECCCT
T ss_pred             EEECCCC
Confidence            9987554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.04  E-value=4.6e-06  Score=71.06  Aligned_cols=99  Identities=11%  Similarity=-0.092  Sum_probs=71.0

Q ss_pred             cCCccccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCC
Q psy7191          65 YNKKYPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKF  142 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nF  142 (413)
                      |......+.+.+++.+.. ..++..++|..+|.|..+..+++..+.  |+|+|.++.+++.|+++....+ +++++++++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~   97 (171)
T 1ws6_A           20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPV   97 (171)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred             CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccH
Confidence            444555556666666641 126789999999999999999987554  9999999999999988765333 789999887


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+....+...   .+.+|.|+.|..+
T Consensus        98 ~~~~~~~~~~---~~~~D~i~~~~~~  120 (171)
T 1ws6_A           98 EVFLPEAKAQ---GERFTVAFMAPPY  120 (171)
T ss_dssp             HHHHHHHHHT---TCCEEEEEECCCT
T ss_pred             HHHHHhhhcc---CCceEEEEECCCC
Confidence            6532222221   1269999988554

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.04  E-value=1.8e-05  Score=72.35  Aligned_cols=79  Identities=14%  Similarity=0.159  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++++..++|..||+|..+..+.+..+.++|+|+|.++.+++...+..+..+++.++.++......+.   .+. +.+|.|
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~---~~~-~~fD~V  130 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS---GIV-EKVDLI  130 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT---TTC-CCEEEE
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhc---ccc-cceeEE
Confidence            6788999999999999999999888878999999999877554333222247888888776653221   122 469999


Q ss_pred             EEc
Q psy7191         163 IMD  165 (413)
Q Consensus       163 LfD  165 (413)
                      +.|
T Consensus       131 ~~~  133 (210)
T 1nt2_A          131 YQD  133 (210)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            976

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.03  E-value=2.3e-05  Score=71.62  Aligned_cols=107  Identities=21%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             HHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191          49 TLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL  128 (413)
Q Consensus        49 ~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l  128 (413)
                      ..-++|.++.+     ++...+.+...+++.+..+.++..++|..+|.|..+..+++..+. +|+|+|.++.+++.|+++
T Consensus        15 ~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~   88 (257)
T 3f4k_A           15 FICNYFKLLKR-----QGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNEN   88 (257)
T ss_dssp             HHHHHHTTSSC-----SSSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHcCccc-----cCCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence            34455555433     345566778888888854678889999999999999999998864 999999999999999887


Q ss_pred             hcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         129 AAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       129 l~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ....  + +++++++++.+++       ...+.+|.|+....+
T Consensus        89 ~~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~v~~~~~l  124 (257)
T 3f4k_A           89 AVKANCADRVKGITGSMDNLP-------FQNEELDLIWSEGAI  124 (257)
T ss_dssp             HHHTTCTTTEEEEECCTTSCS-------SCTTCEEEEEEESCS
T ss_pred             HHHcCCCCceEEEECChhhCC-------CCCCCEEEEEecChH
Confidence            6532  2 6999999997653       223579999977433

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.03  E-value=6.7e-06  Score=74.93  Aligned_cols=88  Identities=19%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L  149 (413)
                      ...++..+....++..++|.++|.|+.+..+++.  .++|+|+|+++.+++.|+++++..   +++.++++++.++.   
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---  140 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---  140 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---
Confidence            3444444432337889999999999999999986  379999999999999998876533   37999999876543   


Q ss_pred             HhcCCCCCCccEEEEcCCCCc
Q psy7191         150 KNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGvSS  170 (413)
                      .     ...+|.|++|..++.
T Consensus       141 ~-----~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A          141 S-----FLKADVVFLSPPWGG  156 (241)
T ss_dssp             G-----GCCCSEEEECCCCSS
T ss_pred             c-----cCCCCEEEECCCcCC
Confidence            2     236999998876654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.03  E-value=4.6e-05  Score=69.34  Aligned_cols=122  Identities=15%  Similarity=0.087  Sum_probs=85.0

Q ss_pred             CCcccchhHHHHHHHHHhHHhhhhhccCCcc-ccchHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEe
Q psy7191          39 NNKFTIEEEETLKKNLASLKRLSEDIYNKKY-PRTFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLD  116 (413)
Q Consensus        39 ~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~-pvll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~D  116 (413)
                      -++..+++.|.|++++.....-....++.+. .....+.+..+. .+.++..++|..||.|..+..+++..+  +|+|+|
T Consensus         8 ~~~~~~~~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD   85 (245)
T 3ggd_A            8 IKKPDINVADAWEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLD   85 (245)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHHHTCCCTTCCCGGGTHHHHHHHHTTTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEE
T ss_pred             ccCCCcchHHHHHHHHHhcccCCccceecchhHHHHHHHHHHHhhccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEE
Confidence            3456677788888888876544444444443 333344444442 246788999999999999999998876  799999


Q ss_pred             CCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191         117 RDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       117 rD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      .++.+++.|+++.. ..+++++++++.++.....-..  ...+|.|+..
T Consensus        86 ~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~~~--~~~~d~v~~~  131 (245)
T 3ggd_A           86 VSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIHS--EIGDANIYMR  131 (245)
T ss_dssp             SCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHHHHH--HHCSCEEEEE
T ss_pred             CCHHHHHHHHHhCc-ccCceEEECccccccccccccc--ccCccEEEEc
Confidence            99999999988763 2489999999988754321000  0137777755

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.02  E-value=9e-06  Score=76.16  Aligned_cols=85  Identities=15%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|..+|.|+.+..+++.+| +++|+++|+++.+++.|++..+.  . +++++++++..+.-..+...+...+.
T Consensus        77 ~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           77 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             HTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            34567999999999999999999987 79999999999999999887643  2 38999998865432222211101136


Q ss_pred             ccEEEEcCC
Q psy7191         159 IDGIIMDVG  167 (413)
Q Consensus       159 VDGILfDLG  167 (413)
                      +|.|++|..
T Consensus       157 fD~V~~d~~  165 (247)
T 1sui_A          157 YDFIFVDAD  165 (247)
T ss_dssp             BSEEEECSC
T ss_pred             EEEEEEcCc
Confidence            999998854

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.01  E-value=1.1e-05  Score=75.46  Aligned_cols=96  Identities=7%  Similarity=0.122  Sum_probs=72.8

Q ss_pred             hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEe
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVY  139 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~  139 (413)
                      ..|++|.   +-+++.+++.+. +.+++.++|..+|.|..|..+++..  ++|+|+|+|+.+++.++++.+..+++++++
T Consensus         6 k~~gQ~fl~d~~~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~   82 (244)
T 1qam_A            6 IKHSQNFITSKHNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLN   82 (244)
T ss_dssp             ----CCBCCCHHHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEEC
T ss_pred             ccCCccccCCHHHHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEE
Confidence            4567776   457788888886 7788999999999999999999885  789999999999999998776556899999


Q ss_pred             cCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         140 GKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       140 ~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +++.+++-  ..    ...+ .|+.|+.|
T Consensus        83 ~D~~~~~~--~~----~~~~-~vv~nlPy  104 (244)
T 1qam_A           83 KDILQFKF--PK----NQSY-KIFGNIPY  104 (244)
T ss_dssp             CCGGGCCC--CS----SCCC-EEEEECCG
T ss_pred             ChHHhCCc--cc----CCCe-EEEEeCCc
Confidence            98865421  00    0123 57778777

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.01  E-value=6.2e-06  Score=74.79  Aligned_cols=84  Identities=6%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcC--CCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMN--NNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~--~~~  156 (413)
                      ..++..++|..+|.|+.|..+++.++ +++|+|+|+++.+++.|+++++.  .. ++++++++..+   .+....  ...
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~l~~~~~~~~~  132 (221)
T 3u81_A           56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQD---LIPQLKKKYDV  132 (221)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH---HGGGTTTTSCC
T ss_pred             hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHH---HHHHHHHhcCC
Confidence            44678999999999999999999875 78999999999999999886543  23 79999988644   333321  111


Q ss_pred             CCccEEEEcCCCC
Q psy7191         157 NSIDGIIMDVGIS  169 (413)
Q Consensus       157 ~~VDGILfDLGvS  169 (413)
                      +.+|.|++|....
T Consensus       133 ~~fD~V~~d~~~~  145 (221)
T 3u81_A          133 DTLDMVFLDHWKD  145 (221)
T ss_dssp             CCCSEEEECSCGG
T ss_pred             CceEEEEEcCCcc
Confidence            4799999986543

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.00  E-value=1.5e-05  Score=73.65  Aligned_cols=78  Identities=12%  Similarity=0.133  Sum_probs=61.8

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc----------CCCCeEEEecCCCC-hHHHHHhc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA----------NDPRLVPVYGKFSD-LPNILKNM  152 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~----------~~~rv~~i~~nFs~-l~~~L~~~  152 (413)
                      .++..++|+.||.|+.+..++...|++.|+|+|+++.+++.|+++.+          ..+++.+++++..+ +...+   
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~---  124 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF---  124 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence            46789999999999999999999998899999999999999876543          23589999998765 54332   


Q ss_pred             CCCCCCccEEEEcC
Q psy7191         153 NNNFNSIDGIIMDV  166 (413)
Q Consensus       153 ~~~~~~VDGILfDL  166 (413)
                        ..+.+|.|++.+
T Consensus       125 --~~~~~d~v~~~~  136 (246)
T 2vdv_E          125 --EKGQLSKMFFCF  136 (246)
T ss_dssp             --CTTCEEEEEEES
T ss_pred             --cccccCEEEEEC
Confidence              234688888543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.00  E-value=9e-06  Score=75.76  Aligned_cols=80  Identities=13%  Similarity=0.137  Sum_probs=64.8

Q ss_pred             CC-CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SS-DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~-~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      +. +++.++|..+|.|+-+..+++..+. +|+|+|+|+.+++.|+++...  .. ++.++++++.++...+     ..+.
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-----~~~~  119 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-----PKER  119 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-----CTTC
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-----ccCC
Confidence            56 7899999999999999988887554 999999999999999887653  23 7999999987764322     2357


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|+.|..|
T Consensus       120 fD~Ii~npPy  129 (259)
T 3lpm_A          120 ADIVTCNPPY  129 (259)
T ss_dssp             EEEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            9999988776

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.00  E-value=5.8e-06  Score=80.90  Aligned_cols=89  Identities=16%  Similarity=0.142  Sum_probs=71.1

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~  148 (413)
                      |...++..+. .+++..++|..||.|..+..++... |+++|+|+|+|+.+++.|+++++..+  +++++++++.++...
T Consensus       191 la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~  269 (354)
T 3tma_A          191 LAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF  269 (354)
T ss_dssp             HHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred             HHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence            4444445554 7788999999999999999999987 88999999999999999998765443  799999998876421


Q ss_pred             HHhcCCCCCCccEEEEcCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGv  168 (413)
                             ...+|.|+.|..|
T Consensus       270 -------~~~~D~Ii~npPy  282 (354)
T 3tma_A          270 -------FPEVDRILANPPH  282 (354)
T ss_dssp             -------CCCCSEEEECCCS
T ss_pred             -------cCCCCEEEECCCC
Confidence                   1247999988777

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.99  E-value=1.4e-05  Score=71.18  Aligned_cols=89  Identities=16%  Similarity=0.097  Sum_probs=70.9

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~  147 (413)
                      |-+...+++.+. +.++..++|..+|.|..+..+++.  .++|+|+|+++.+++.|+++++.  .+++++++++..+.. 
T Consensus        63 ~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-  138 (210)
T 3lbf_A           63 PYMVARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-  138 (210)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-
Confidence            445677778886 888999999999999999998887  57999999999999999987654  347999998875421 


Q ss_pred             HHHhcCCCCCCccEEEEcCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGv  168 (413)
                        ..    .+.+|.|+.+.++
T Consensus       139 --~~----~~~~D~i~~~~~~  153 (210)
T 3lbf_A          139 --QA----RAPFDAIIVTAAP  153 (210)
T ss_dssp             --GG----GCCEEEEEESSBC
T ss_pred             --cc----CCCccEEEEccch
Confidence              11    2369999998655

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=97.99  E-value=1.9e-05  Score=74.21  Aligned_cols=87  Identities=13%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L  149 (413)
                      +++.+++.+.  .++..++|..+|.|..+..++...|.++|+|+|+++.+++.|+++.+.  .+++.++++++.+.   +
T Consensus        98 l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~---~  172 (276)
T 2b3t_A           98 LVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---L  172 (276)
T ss_dssp             HHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---G
T ss_pred             HHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh---c
Confidence            4455666653  467799999999999999999988989999999999999999887543  23799999987653   2


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                      .     .+.+|.|+.|..|
T Consensus       173 ~-----~~~fD~Iv~npPy  186 (276)
T 2b3t_A          173 A-----GQQFAMIVSNPPY  186 (276)
T ss_dssp             T-----TCCEEEEEECCCC
T ss_pred             c-----cCCccEEEECCCC
Confidence            1     2369999987766

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=97.99  E-value=1.5e-05  Score=71.09  Aligned_cols=88  Identities=16%  Similarity=0.149  Sum_probs=71.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L  149 (413)
                      .+.+++.+. +.++..++|..+|.|..+..+++.. |.++|+|+|.++.+++.++++...  .+++.++.+++.++.   
T Consensus        26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---  101 (219)
T 3dh0_A           26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP---  101 (219)
T ss_dssp             HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS---
T ss_pred             HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC---
Confidence            366777775 7888999999999999999999997 778999999999999999887543  247999999987653   


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                          ...+.+|.|+....+
T Consensus       102 ----~~~~~fD~v~~~~~l  116 (219)
T 3dh0_A          102 ----LPDNTVDFIFMAFTF  116 (219)
T ss_dssp             ----SCSSCEEEEEEESCG
T ss_pred             ----CCCCCeeEEEeehhh
Confidence                223469999976544

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.99  E-value=3.2e-05  Score=68.63  Aligned_cols=75  Identities=21%  Similarity=0.291  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      +.++..++|..+|.|+.+..+++. +..+|+|+|+++.+++.++++.+..+ ++.++++++.+++          ..+|.
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----------~~~D~  115 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----------SRVDI  115 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----------CCCSE
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC----------CCCCE
Confidence            456889999999999999998876 34589999999999999998765444 7999999886642          25999


Q ss_pred             EEEcCCC
Q psy7191         162 IIMDVGI  168 (413)
Q Consensus       162 ILfDLGv  168 (413)
                      |+.|..+
T Consensus       116 v~~~~p~  122 (207)
T 1wy7_A          116 VIMNPPF  122 (207)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCC
Confidence            9988765

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=97.99  E-value=2.6e-05  Score=71.11  Aligned_cols=95  Identities=12%  Similarity=0.139  Sum_probs=67.8

Q ss_pred             ccccchHhH---HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191          68 KYPRTFQTS---ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS  143 (413)
Q Consensus        68 H~pvll~ev---i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs  143 (413)
                      +.+.++..+   ++.+. +.++..++|..+|.|+.+..+++.+ |.++|+|+|.++.+++.+.+..+..++++++++++.
T Consensus        58 ~~~~~~~~~~~~l~~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~  136 (233)
T 2ipx_A           58 FRSKLAAAILGGVDQIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDAR  136 (233)
T ss_dssp             TTCHHHHHHHTTCSCCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTT
T ss_pred             cchhHHHHHHhHHheec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccC
Confidence            334444444   33443 6788999999999999999999987 678999999999877665544332358999999988


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      +...+ ...   .+.+|.|+.|..
T Consensus       137 ~~~~~-~~~---~~~~D~V~~~~~  156 (233)
T 2ipx_A          137 HPHKY-RML---IAMVDVIFADVA  156 (233)
T ss_dssp             CGGGG-GGG---CCCEEEEEECCC
T ss_pred             Chhhh-ccc---CCcEEEEEEcCC
Confidence            75321 111   236999998653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.98  E-value=1.9e-05  Score=74.21  Aligned_cols=89  Identities=19%  Similarity=0.276  Sum_probs=70.0

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCC
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSD  144 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~  144 (413)
                      +|-....++..+. +.++..++|+.+|.|..+..+++.+ |.++|+|+|+++.+++.|+++.+..   +++.++++++.+
T Consensus        97 ~~~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           97 YPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  175 (277)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             CHHHHHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            3444456667775 7889999999999999999999984 7899999999999999998876533   379999888754


Q ss_pred             hHHHHHhcCCCCCCccEEEEcC
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      .   +     +.+.+|.|++|.
T Consensus       176 ~---~-----~~~~~D~V~~~~  189 (277)
T 1o54_A          176 G---F-----DEKDVDALFLDV  189 (277)
T ss_dssp             C---C-----SCCSEEEEEECC
T ss_pred             c---c-----cCCccCEEEECC
Confidence            3   2     224699999754

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.97  E-value=4.7e-06  Score=74.73  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=61.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++..++|+.+|.|+.+..+++.+| +++|+|+|+++.+++.|+++++.  . +++++++++..+   ++...   .+ +
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~---~~-f  127 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG---IAAGQ---RD-I  127 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH---HHTTC---CS-E
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH---HhccC---CC-C
Confidence            3567999999999999999999887 79999999999999999876543  2 279999887643   33322   24 9


Q ss_pred             cEEEEcCC
Q psy7191         160 DGIIMDVG  167 (413)
Q Consensus       160 DGILfDLG  167 (413)
                      |.|+.|..
T Consensus       128 D~v~~~~~  135 (210)
T 3c3p_A          128 DILFMDCD  135 (210)
T ss_dssp             EEEEEETT
T ss_pred             CEEEEcCC
Confidence            99998844

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=97.96  E-value=5e-05  Score=69.80  Aligned_cols=115  Identities=13%  Similarity=0.044  Sum_probs=74.6

Q ss_pred             hhHHHHHHHHHhHHhhhhhccCCcccc-----chHhHHhccC-----CCCCCCEEEEEecCCchhHHHHHHhcCCCEEEE
Q psy7191          45 EEEETLKKNLASLKRLSEDIYNKKYPR-----TFQTSASGLN-----DSSDDVTMIDMTYGDGNHTRLILENIGNVKVIC  114 (413)
Q Consensus        45 ~~~e~~~~~~~sl~~~~~n~y~~H~pv-----ll~evi~~L~-----~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via  114 (413)
                      ...+.+..++.-+..-+..++.. .|.     +...+++.+.     ...++..++|..+|+|..+..++...|+++|+|
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~~l~-~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~   99 (240)
T 1xdz_A           21 RQLEQFELYYDMLVEWNEKINLT-SITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTI   99 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCC-SCCSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHhHhcCcc-ccCCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEE
Confidence            33456677777776554433222 221     1222232221     124678999999999999999887778899999


Q ss_pred             EeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191         115 LDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       115 ~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +|.++.+++.|+++.+.  .+++++++++..++.   ..... .+.+|.|+.
T Consensus       100 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~~~-~~~fD~V~~  147 (240)
T 1xdz_A          100 VDSLNKRITFLEKLSEALQLENTTFCHDRAETFG---QRKDV-RESYDIVTA  147 (240)
T ss_dssp             EESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT---TCTTT-TTCEEEEEE
T ss_pred             EeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc---ccccc-cCCccEEEE
Confidence            99999999999876543  237999998764432   10001 246999995

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.96  E-value=2e-05  Score=71.37  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhc
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~  152 (413)
                      +++.+. +.++..++|..+|.|..+..+++.  .++|+|+|+++.+++.|+++.+.  .+ ++.++++++.+.   +...
T Consensus        47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~---~~~~  120 (204)
T 3njr_A           47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA---LADL  120 (204)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG---GTTS
T ss_pred             HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh---cccC
Confidence            445555 778899999999999999998887  68999999999999999887643  34 799999998762   2211


Q ss_pred             CCCCCCccEEEEcCC
Q psy7191         153 NNNFNSIDGIIMDVG  167 (413)
Q Consensus       153 ~~~~~~VDGILfDLG  167 (413)
                          ..+|.|+.+-|
T Consensus       121 ----~~~D~v~~~~~  131 (204)
T 3njr_A          121 ----PLPEAVFIGGG  131 (204)
T ss_dssp             ----CCCSEEEECSC
T ss_pred             ----CCCCEEEECCc
Confidence                25899996643

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.95  E-value=1.8e-05  Score=76.74  Aligned_cols=82  Identities=23%  Similarity=0.244  Sum_probs=66.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++|.+++|+.+|.|+-|..++.. +.++|+|+|.+|.|++.++++++.  . +++++++++..++.        ..+.+
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~--------~~~~~  193 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--------GENIA  193 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------CCSCE
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--------cccCC
Confidence            468999999999999999988876 557999999999999999886553  2 38999999876542        12469


Q ss_pred             cEEEEcCCCCccCc
Q psy7191         160 DGIIMDVGISDSQA  173 (413)
Q Consensus       160 DGILfDLGvSS~Ql  173 (413)
                      |.|++|+..++.++
T Consensus       194 D~Vi~~~p~~~~~~  207 (278)
T 3k6r_A          194 DRILMGYVVRTHEF  207 (278)
T ss_dssp             EEEEECCCSSGGGG
T ss_pred             CEEEECCCCcHHHH
Confidence            99999998887653

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.94  E-value=2e-05  Score=74.80  Aligned_cols=86  Identities=14%  Similarity=0.154  Sum_probs=66.9

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhc
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~  152 (413)
                      |....+....++..++|+.+|.|+.|..++...+.++|+|+|.++.|++.|+++.+..  .++.+++++..++ ..    
T Consensus       109 e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~----  183 (272)
T 3a27_A          109 ERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL----  183 (272)
T ss_dssp             HHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC----
T ss_pred             HHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc----
Confidence            4333333356788999999999999999999887889999999999999998866532  4788999987654 11    


Q ss_pred             CCCCCCccEEEEcCCC
Q psy7191         153 NNNFNSIDGIIMDVGI  168 (413)
Q Consensus       153 ~~~~~~VDGILfDLGv  168 (413)
                         ...+|.|++|...
T Consensus       184 ---~~~~D~Vi~d~p~  196 (272)
T 3a27_A          184 ---KDVADRVIMGYVH  196 (272)
T ss_dssp             ---TTCEEEEEECCCS
T ss_pred             ---cCCceEEEECCcc
Confidence               1369999988643

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.94  E-value=1.8e-05  Score=75.27  Aligned_cols=79  Identities=23%  Similarity=0.201  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++++.++|+.+|.|+.|..++...+. +|+|+|.++.|++.|+++.+.  .. ++++++++..++..        ...+
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~f  193 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCc
Confidence            457899999999999999999988655 899999999999999886542  33 69999999876532        2469


Q ss_pred             cEEEEcCCCCc
Q psy7191         160 DGIIMDVGISD  170 (413)
Q Consensus       160 DGILfDLGvSS  170 (413)
                      |.|++|...+.
T Consensus       194 D~Vi~~~p~~~  204 (278)
T 2frn_A          194 DRILMGYVVRT  204 (278)
T ss_dssp             EEEEECCCSSG
T ss_pred             cEEEECCchhH
Confidence            99999876544

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.94  E-value=7.3e-05  Score=66.04  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      ..+..+++.+....+++.++|..+|.|..+..+++.  ..+|+|+|.++.+++.+++  ...+++.++++++.++   + 
T Consensus        32 ~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~---~-  103 (218)
T 3ou2_A           32 SAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW---T-  103 (218)
T ss_dssp             TTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC---C-
T ss_pred             HHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC---C-
Confidence            345566666654567789999999999999999887  5699999999999999987  2335899999998765   1 


Q ss_pred             hcCCCCCCccEEEEcC
Q psy7191         151 NMNNNFNSIDGIIMDV  166 (413)
Q Consensus       151 ~~~~~~~~VDGILfDL  166 (413)
                          ..+.+|.|+...
T Consensus       104 ----~~~~~D~v~~~~  115 (218)
T 3ou2_A          104 ----PDRQWDAVFFAH  115 (218)
T ss_dssp             ----CSSCEEEEEEES
T ss_pred             ----CCCceeEEEEec
Confidence                235799999753

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=97.93  E-value=4.1e-05  Score=65.92  Aligned_cols=86  Identities=13%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C--CeEEEecCCCChHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P--RLVPVYGKFSDLPN  147 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~--rv~~i~~nFs~l~~  147 (413)
                      ..+.+++.+. ..++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++....  +  ++.++++++.+.. 
T Consensus        40 ~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-  115 (194)
T 1dus_A           40 GTKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV-  115 (194)
T ss_dssp             HHHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC-
T ss_pred             HHHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc-
Confidence            4566777775 678899999999999999999887  679999999999999998876432  3  3999999876531 


Q ss_pred             HHHhcCCCCCCccEEEEcCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGv  168 (413)
                             ..+.+|.|+.|..+
T Consensus       116 -------~~~~~D~v~~~~~~  129 (194)
T 1dus_A          116 -------KDRKYNKIITNPPI  129 (194)
T ss_dssp             -------TTSCEEEEEECCCS
T ss_pred             -------ccCCceEEEECCCc
Confidence                   12469999976443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.93  E-value=2.7e-05  Score=73.67  Aligned_cols=83  Identities=19%  Similarity=0.254  Sum_probs=68.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~  148 (413)
                      +++.+++.+. ++++..++|..+|.|+.+..+++.++ ++|+|+|.++.+++.|+++....  + ++.++++++.++   
T Consensus        60 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           60 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---  134 (302)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred             HHHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---
Confidence            4456777775 78899999999999999999999876 79999999999999998876532  3 899999988654   


Q ss_pred             HHhcCCCCCCccEEEEcC
Q psy7191         149 LKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDL  166 (413)
                             .+.+|.|+...
T Consensus       135 -------~~~fD~v~~~~  145 (302)
T 3hem_A          135 -------DEPVDRIVSLG  145 (302)
T ss_dssp             -------CCCCSEEEEES
T ss_pred             -------CCCccEEEEcc
Confidence                   14699999763

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=97.92  E-value=1.7e-05  Score=73.03  Aligned_cols=78  Identities=8%  Similarity=0.101  Sum_probs=62.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCCh-HHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDL-PNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l-~~~L~~~~~~~~~VD  160 (413)
                      .++.+++|..||.|.++..+.+..|+..|+|+|+++.+++.|+++.+.  ..++.+++++..++ +..+     +.+.+|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~-----~~~~~d  107 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI-----PDNSLR  107 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS-----CTTCEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc-----CCCChh
Confidence            467899999999999999999999999999999999999999876543  34799998886553 2222     234799


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|++.+
T Consensus       108 ~v~~~~  113 (218)
T 3dxy_A          108 MVQLFF  113 (218)
T ss_dssp             EEEEES
T ss_pred             eEEEeC
Confidence            998653

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.92  E-value=1.7e-05  Score=76.42  Aligned_cols=97  Identities=10%  Similarity=0.147  Sum_probs=79.3

Q ss_pred             hhccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEE
Q psy7191          62 EDIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPV  138 (413)
Q Consensus        62 ~n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i  138 (413)
                      +-.|++|+   |-+++.+++.+. +.++ .++|..+|.|..|..+++..  ++|+|+|+|+.+++.++++... .+++++
T Consensus        22 ~k~~GQnfL~d~~i~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~-~~v~vi   96 (271)
T 3fut_A           22 DKRFGQNFLVSEAHLRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSG-LPVRLV   96 (271)
T ss_dssp             STTSSCCEECCHHHHHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTT-SSEEEE
T ss_pred             cccCCccccCCHHHHHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCC-CCEEEE
Confidence            45688886   678899999997 8888 99999999999999999874  6899999999999999887653 589999


Q ss_pred             ecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         139 YGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       139 ~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      ++++..++  +...    ..+|.|+.||.|.
T Consensus        97 ~~D~l~~~--~~~~----~~~~~iv~NlPy~  121 (271)
T 3fut_A           97 FQDALLYP--WEEV----PQGSLLVANLPYH  121 (271)
T ss_dssp             ESCGGGSC--GGGS----CTTEEEEEEECSS
T ss_pred             ECChhhCC--hhhc----cCccEEEecCccc
Confidence            99987653  1211    1478899999883

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.92  E-value=3.5e-06  Score=80.88  Aligned_cols=86  Identities=16%  Similarity=0.169  Sum_probs=61.4

Q ss_pred             HhHHhccCCCCCC--CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHH-------HHHHHhhhcC---C-CCeEEEec
Q psy7191          74 QTSASGLNDSSDD--VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKES-------FEKAKTLAAN---D-PRLVPVYG  140 (413)
Q Consensus        74 ~evi~~L~~~~~~--~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~A-------l~~Ak~ll~~---~-~rv~~i~~  140 (413)
                      +.+++.+. ++++  ..++|+|+|.|..+..++..  .++|+++|+++.+       ++.+++..+.   . .+++++++
T Consensus        76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~  152 (258)
T 2oyr_A           76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (258)
T ss_dssp             SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence            44455554 5666  89999999999999999887  4689999999965       4444332211   1 37999998


Q ss_pred             CCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         141 KFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       141 nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +..+   ++....   ..+|.|++|.+|
T Consensus       153 D~~~---~L~~~~---~~fDvV~lDP~y  174 (258)
T 2oyr_A          153 SSLT---ALTDIT---PRPQVVYLDPMF  174 (258)
T ss_dssp             CHHH---HSTTCS---SCCSEEEECCCC
T ss_pred             CHHH---HHHhCc---ccCCEEEEcCCC
Confidence            7654   344321   259999999888

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.91  E-value=2.8e-05  Score=75.85  Aligned_cols=133  Identities=14%  Similarity=0.105  Sum_probs=87.8

Q ss_pred             HHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhh---ccCCcc-ccch----HhHHhccCCCCCCCEEEEEecCCch
Q psy7191          27 YLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSED---IYNKKY-PRTF----QTSASGLNDSSDDVTMIDMTYGDGN   98 (413)
Q Consensus        27 ~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n---~y~~H~-pvll----~evi~~L~~~~~~~i~VDaTlG~GG   98 (413)
                      -.+.++...|.+=+-..++.+ ...+.|+.+.+-...   .|+.|+ |.-+    .++++.+..+.++..++|.+||.|+
T Consensus        65 ~~~~~l~~~~~~~~~~~~~~~-~~g~~ye~~~~~~~~~~~~~g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~  143 (344)
T 2f8l_A           65 EKQLKLQASYESIELENFSNE-EIRKGLQLALLKGMKHGIQVNHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTAN  143 (344)
T ss_dssp             -CHHHHHHHHHTCCGGGSCHH-HHHHHHHHHHHHHTSSSCCGGGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSH
T ss_pred             HHHHHHHHHHHhcChhcCChh-HHHHHHHHHHHHHhhcccccCcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccH
Confidence            333455566655444555544 678888887443322   345553 4333    3334434225567899999999999


Q ss_pred             hHHHHHHhcCC-----CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191          99 HTRLILENIGN-----VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus        99 HS~aILe~~p~-----g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+..+++..+.     ..|+|+|+|+.+++.|+.++...+ ++.+++++.-...        ....+|.|+.|..+
T Consensus       144 ~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~--------~~~~fD~Ii~NPPf  211 (344)
T 2f8l_A          144 LLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--------LVDPVDVVISDLPV  211 (344)
T ss_dssp             HHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--------CCCCEEEEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc--------ccCCccEEEECCCC
Confidence            99999988753     789999999999999987643222 6788888754311        12469999987665

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=97.90  E-value=2.3e-05  Score=75.22  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=69.1

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~  148 (413)
                      |++.+++.+. ..++..++|..+|.|..+..++.. |.++|+|+|+++.|++.|+++.+..  . +++++++++.+.   
T Consensus       111 lv~~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~---  185 (284)
T 1nv8_A          111 LVELALELIR-KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---  185 (284)
T ss_dssp             HHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---
T ss_pred             HHHHHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh---
Confidence            4556666653 346679999999999999999999 8899999999999999998876533  3 699999998653   


Q ss_pred             HHhcCCCCCCc---cEEEEcCCCC
Q psy7191         149 LKNMNNNFNSI---DGIIMDVGIS  169 (413)
Q Consensus       149 L~~~~~~~~~V---DGILfDLGvS  169 (413)
                      +.      +.+   |.|+.|..|.
T Consensus       186 ~~------~~f~~~D~IvsnPPyi  203 (284)
T 1nv8_A          186 FK------EKFASIEMILSNPPYV  203 (284)
T ss_dssp             GG------GGTTTCCEEEECCCCB
T ss_pred             cc------cccCCCCEEEEcCCCC
Confidence            21      136   9999987774

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.89  E-value=5.9e-06  Score=77.17  Aligned_cols=84  Identities=14%  Similarity=0.092  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|+.+|.|+.|..+++.+| +++|+|+|+++.+++.|+++++.  . +++++++++..++...+...+ ..+.
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~-~~~~  136 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG-GEHQ  136 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-CSSC
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-CCCC
Confidence            34568999999999999999999886 79999999999999998877643  2 389999998755432221111 0136


Q ss_pred             ccEEEEcCC
Q psy7191         159 IDGIIMDVG  167 (413)
Q Consensus       159 VDGILfDLG  167 (413)
                      +|.|++|..
T Consensus       137 fD~V~~d~~  145 (242)
T 3r3h_A          137 FDFIFIDAD  145 (242)
T ss_dssp             EEEEEEESC
T ss_pred             EeEEEEcCC
Confidence            999999865

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=97.88  E-value=2.5e-05  Score=69.97  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=66.8

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-------CeEEEecCCC
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-------RLVPVYGKFS  143 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-------rv~~i~~nFs  143 (413)
                      ...+.+++.+. ..++..++|..+|.|..+..+++..|..+|+|+|.++.+++.|++++....       ++.+++++..
T Consensus        16 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           16 QRMNGVVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            34455566664 567889999999999999999988787899999999999999988765321       7999999875


Q ss_pred             ChHHHHHhcCCCCCCccEEEEc
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      .++.       ..+.+|.|+..
T Consensus        95 ~~~~-------~~~~fD~v~~~  109 (217)
T 3jwh_A           95 YQDK-------RFHGYDAATVI  109 (217)
T ss_dssp             SCCG-------GGCSCSEEEEE
T ss_pred             cccc-------cCCCcCEEeeH
Confidence            4321       12368999854

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.87  E-value=2.5e-05  Score=79.20  Aligned_cols=92  Identities=14%  Similarity=0.121  Sum_probs=69.6

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNI  148 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~  148 (413)
                      .|++.+++.+. +.++..++|+.+|.|..+..+++.  .++|+|+|+++.|++.|+++.+.  ..++.+++++..+..  
T Consensus       273 ~l~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l--  347 (433)
T 1uwv_A          273 KMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDV--  347 (433)
T ss_dssp             HHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCC--
T ss_pred             HHHHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHh--
Confidence            46777788875 677889999999999999999876  57999999999999999887643  248999999976521  


Q ss_pred             HHhcCCCCCCccEEEEcCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGv  168 (413)
                       .......+.+|.|++|..+
T Consensus       348 -~~~~~~~~~fD~Vv~dPPr  366 (433)
T 1uwv_A          348 -TKQPWAKNGFDKVLLDPAR  366 (433)
T ss_dssp             -SSSGGGTTCCSEEEECCCT
T ss_pred             -hhhhhhcCCCCEEEECCCC
Confidence             1110112368999975444

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.86  E-value=2.6e-05  Score=70.28  Aligned_cols=90  Identities=18%  Similarity=0.092  Sum_probs=68.5

Q ss_pred             chHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC-------CCCeEEEecCC
Q psy7191          72 TFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN-------DPRLVPVYGKF  142 (413)
Q Consensus        72 ll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~-------~~rv~~i~~nF  142 (413)
                      +...+++.|. .+.++..++|..+|.|+.+..+++.. +.++|+|+|+++.+++.++++...       .+++.+++++.
T Consensus        63 ~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  142 (226)
T 1i1n_A           63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  142 (226)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence            4556666663 25678999999999999999999886 568999999999999999876543       24788888876


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ....   ..    ...+|.|+.+.++
T Consensus       143 ~~~~---~~----~~~fD~i~~~~~~  161 (226)
T 1i1n_A          143 RMGY---AE----EAPYDAIHVGAAA  161 (226)
T ss_dssp             GGCC---GG----GCCEEEEEECSBB
T ss_pred             ccCc---cc----CCCcCEEEECCch
Confidence            5321   11    2369999988766

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.86  E-value=2.2e-05  Score=74.39  Aligned_cols=97  Identities=20%  Similarity=0.332  Sum_probs=75.1

Q ss_pred             hhccCCccc---cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEE
Q psy7191          62 EDIYNKKYP---RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPV  138 (413)
Q Consensus        62 ~n~y~~H~p---vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i  138 (413)
                      +-.|++|+-   -+++.+++.+. +.+++.++|..+|.|..|..+++. +.++|+|+|+|+.+++.++++  ...+++++
T Consensus         6 ~k~~GQnfl~d~~i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~--~~~~v~~i   81 (249)
T 3ftd_A            6 KKSFGQHLLVSEGVLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI--GDERLEVI   81 (249)
T ss_dssp             --CCCSSCEECHHHHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS--CCTTEEEE
T ss_pred             CCcccccccCCHHHHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc--cCCCeEEE
Confidence            346788764   47788888886 788999999999999999999987 457999999999999999877  33589999


Q ss_pred             ecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         139 YGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       139 ~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ++++..++  +....   . ...|+.|+.|
T Consensus        82 ~~D~~~~~--~~~~~---~-~~~vv~NlPy  105 (249)
T 3ftd_A           82 NEDASKFP--FCSLG---K-ELKVVGNLPY  105 (249)
T ss_dssp             CSCTTTCC--GGGSC---S-SEEEEEECCT
T ss_pred             EcchhhCC--hhHcc---C-CcEEEEECch
Confidence            99987753  11110   1 2368888887

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.85  E-value=7.9e-06  Score=73.63  Aligned_cols=92  Identities=20%  Similarity=0.106  Sum_probs=65.1

Q ss_pred             ccchHhHHhccCCCC-CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C--CCeEEEecCCCC
Q psy7191          70 PRTFQTSASGLNDSS-DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D--PRLVPVYGKFSD  144 (413)
Q Consensus        70 pvll~evi~~L~~~~-~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~--~rv~~i~~nFs~  144 (413)
                      ..+.+.+++.|. .. ++..++|..+|.|+.+..++... ..+|+|+|.|+.+++.|+++.+.  .  +++.++++++.+
T Consensus        38 ~~~~~~l~~~l~-~~~~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~  115 (201)
T 2ift_A           38 DRVKETLFNWLM-PYIHQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLD  115 (201)
T ss_dssp             CHHHHHHHHHHH-HHHTTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHH
T ss_pred             HHHHHHHHHHHH-HhcCCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHH
Confidence            344445555553 22 57899999999999999888763 36899999999999999886542  3  478999887643


Q ss_pred             hHHHHHhcCCCCCC-ccEEEEcCCC
Q psy7191         145 LPNILKNMNNNFNS-IDGIIMDVGI  168 (413)
Q Consensus       145 l~~~L~~~~~~~~~-VDGILfDLGv  168 (413)
                         ++..  ...+. +|.|++|..+
T Consensus       116 ---~~~~--~~~~~~fD~I~~~~~~  135 (201)
T 2ift_A          116 ---FLKQ--PQNQPHFDVVFLDPPF  135 (201)
T ss_dssp             ---HTTS--CCSSCCEEEEEECCCS
T ss_pred             ---HHHh--hccCCCCCEEEECCCC
Confidence               2322  11247 9999976543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.85  E-value=5.6e-05  Score=68.16  Aligned_cols=91  Identities=14%  Similarity=0.107  Sum_probs=72.0

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI  148 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~  148 (413)
                      .|-++..+++.+. +.++..++|..+|.|..+..+++..  .+|+|+|.++.+++.++++....+++.++++++.+.   
T Consensus        55 ~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~---  128 (231)
T 1vbf_A           55 ALNLGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG---  128 (231)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC---
T ss_pred             CHHHHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccc---
Confidence            4566778888886 7889999999999999999998875  799999999999999998876544788898887541   


Q ss_pred             HHhcCCCCCCccEEEEcCCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +..    .+.+|.|+.+.++.
T Consensus       129 ~~~----~~~fD~v~~~~~~~  145 (231)
T 1vbf_A          129 YEE----EKPYDRVVVWATAP  145 (231)
T ss_dssp             CGG----GCCEEEEEESSBBS
T ss_pred             ccc----CCCccEEEECCcHH
Confidence            111    23699999886653

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=97.84  E-value=2.1e-05  Score=70.40  Aligned_cols=89  Identities=20%  Similarity=0.249  Sum_probs=67.7

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-------CCeEEEecC
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-------PRLVPVYGK  141 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-------~rv~~i~~n  141 (413)
                      .|..++.+++.+. ..++..++|..+|.|..+..+++..|..+|+|+|.++.+++.|+++....       +++.+++++
T Consensus        14 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (219)
T 3jwg_A           14 NQQRLGTVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSS   92 (219)
T ss_dssp             HHHHHHHHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECC
T ss_pred             hHHHHHHHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCc
Confidence            3445556666664 56778999999999999999998888789999999999999998875431       178999988


Q ss_pred             CCChHHHHHhcCCCCCCccEEEEc
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      ...++.       ..+.+|.|+..
T Consensus        93 ~~~~~~-------~~~~fD~V~~~  109 (219)
T 3jwg_A           93 LVYRDK-------RFSGYDAATVI  109 (219)
T ss_dssp             SSSCCG-------GGTTCSEEEEE
T ss_pred             cccccc-------ccCCCCEEEEH
Confidence            754321       12368888853

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.84  E-value=6.9e-05  Score=77.01  Aligned_cols=98  Identities=13%  Similarity=0.099  Sum_probs=75.1

Q ss_pred             hccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHH-------HhhhcC----
Q psy7191          63 DIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKA-------KTLAAN----  131 (413)
Q Consensus        63 n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~A-------k~ll~~----  131 (413)
                      ..|++-.|-++..+++.+. +.++..++|..||.|..+..+++..+..+|+|+|+++.+++.|       +++++.    
T Consensus       221 ~~yGet~p~~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~  299 (433)
T 1u2z_A          221 YVYGELLPNFLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR  299 (433)
T ss_dssp             GCCCCBCHHHHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             cccccccHHHHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC
Confidence            4667778888999999986 8899999999999999999999887777999999999999988       655432    


Q ss_pred             CCCeEEEec-CCCChHHHHHhcCCCCCCccEEEEc
Q psy7191         132 DPRLVPVYG-KFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       132 ~~rv~~i~~-nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      ..++.++++ .+.....+-...    ..+|.|+++
T Consensus       300 ~~nV~~i~gD~~~~~~~~~~~~----~~FDvIvvn  330 (433)
T 1u2z_A          300 LNNVEFSLKKSFVDNNRVAELI----PQCDVILVN  330 (433)
T ss_dssp             CCCEEEEESSCSTTCHHHHHHG----GGCSEEEEC
T ss_pred             CCceEEEEcCcccccccccccc----CCCCEEEEe
Confidence            348999885 564311110111    258999975

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.82  E-value=2.9e-05  Score=69.25  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCCh
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDL  145 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l  145 (413)
                      .....+.+.+++.+.   ++..++|..+|.|..+..+++..+  +|+|+|.++.+++.|+++.+.. .++.++++++.++
T Consensus        23 ~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~   97 (227)
T 1ve3_A           23 SRIETLEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKL   97 (227)
T ss_dssp             HHHHHHHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSC
T ss_pred             HHHHHHHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcC
Confidence            333344455555553   478999999999999988888765  8999999999999998875433 4899999988764


Q ss_pred             HHHHHhcCCCCCCccEEEEc
Q psy7191         146 PNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfD  165 (413)
                      .       ++.+.+|.|+.+
T Consensus        98 ~-------~~~~~~D~v~~~  110 (227)
T 1ve3_A           98 S-------FEDKTFDYVIFI  110 (227)
T ss_dssp             C-------SCTTCEEEEEEE
T ss_pred             C-------CCCCcEEEEEEc
Confidence            2       223469999865

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.82  E-value=3.9e-05  Score=69.23  Aligned_cols=96  Identities=19%  Similarity=0.126  Sum_probs=70.7

Q ss_pred             ccchHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhc-----CCCEEEEEeCCHHHHHHHHhhhcC-------CCCeE
Q psy7191          70 PRTFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENI-----GNVKVICLDRDKESFEKAKTLAAN-------DPRLV  136 (413)
Q Consensus        70 pvll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~-----p~g~Via~DrD~~Al~~Ak~ll~~-------~~rv~  136 (413)
                      |.+...+++.|. .+.++..++|..+|.|..+..+++..     |.++|+|+|+++.+++.|+++++.       .+++.
T Consensus        64 p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~  143 (227)
T 2pbf_A           64 PHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFK  143 (227)
T ss_dssp             HHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEE
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEE
Confidence            345556667662 26788999999999999999999876     468999999999999999886542       24799


Q ss_pred             EEecCCCChH-HHHHhcCCCCCCccEEEEcCCCC
Q psy7191         137 PVYGKFSDLP-NILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       137 ~i~~nFs~l~-~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +++++..+.. .....    ...+|.|+.+.++.
T Consensus       144 ~~~~d~~~~~~~~~~~----~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          144 IIHKNIYQVNEEEKKE----LGLFDAIHVGASAS  173 (227)
T ss_dssp             EEECCGGGCCHHHHHH----HCCEEEEEECSBBS
T ss_pred             EEECChHhcccccCcc----CCCcCEEEECCchH
Confidence            9998876531 11011    13599999887664

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.81  E-value=4.4e-05  Score=69.99  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCCh-HHHHHh------
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDL-PNILKN------  151 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l-~~~L~~------  151 (413)
                      ..++..++|+.+|.|..+..+++.+| .++|+|+|+++.+++.|+++++.  .. ++.+++++..+. ..+...      
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            45678999999999999999999987 68999999999999999887643  22 699999876542 222111      


Q ss_pred             -cCCCC--CCccEEEEcCC
Q psy7191         152 -MNNNF--NSIDGIIMDVG  167 (413)
Q Consensus       152 -~~~~~--~~VDGILfDLG  167 (413)
                       .+++.  +.+|.|++|.+
T Consensus       138 ~~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSC
T ss_pred             cccccCCCCCcCEEEEeCC
Confidence             01111  46999998753

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.80  E-value=5.1e-05  Score=68.38  Aligned_cols=84  Identities=11%  Similarity=0.064  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ..++..++|..+|.|..+..+++.+| .++|+++|+++.+++.|+++++.  . .++++++++..+...-+...+ ..+.
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-~~~~  145 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-EAGT  145 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-CTTC
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-CCCC
Confidence            34678999999999999999999887 68999999999999999887643  2 389999987654322222111 0136


Q ss_pred             ccEEEEcCC
Q psy7191         159 IDGIIMDVG  167 (413)
Q Consensus       159 VDGILfDLG  167 (413)
                      +|.|++|..
T Consensus       146 ~D~v~~d~~  154 (229)
T 2avd_A          146 FDVAVVDAD  154 (229)
T ss_dssp             EEEEEECSC
T ss_pred             ccEEEECCC
Confidence            999998654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.80  E-value=5.4e-05  Score=69.02  Aligned_cols=90  Identities=13%  Similarity=0.042  Sum_probs=72.6

Q ss_pred             cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecC
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGK  141 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~n  141 (413)
                      ....+|..+..+++.+. +.++..++|..+|.|..+..+++.. +++|+|+|.++.+++.|+++.+..   +++.+++++
T Consensus        17 ~~~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d   94 (256)
T 1nkv_A           17 HNPFTEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND   94 (256)
T ss_dssp             SSSCCHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             cCCCCHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECC
Confidence            44556667778888886 7889999999999999999998887 568999999999999998876432   379999999


Q ss_pred             CCChHHHHHhcCCCCCCccEEEE
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +.++..        .+.+|.|+.
T Consensus        95 ~~~~~~--------~~~fD~V~~  109 (256)
T 1nkv_A           95 AAGYVA--------NEKCDVAAC  109 (256)
T ss_dssp             CTTCCC--------SSCEEEEEE
T ss_pred             hHhCCc--------CCCCCEEEE
Confidence            877531        246999986

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.79  E-value=7.3e-05  Score=74.75  Aligned_cols=84  Identities=11%  Similarity=0.104  Sum_probs=67.2

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-----CeEEEecCCCChHHHHH
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-----RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-----rv~~i~~nFs~l~~~L~  150 (413)
                      +++.|. ..+++.++|..||.|..+..+++..|..+|+|+|+++.+++.|+++.+...     ++.++.+++.+.     
T Consensus       214 ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~-----  287 (375)
T 4dcm_A          214 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-----  287 (375)
T ss_dssp             HHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT-----
T ss_pred             HHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc-----
Confidence            566665 667789999999999999999999999999999999999999988654321     588888887641     


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                         +..+.+|.|+.|..+
T Consensus       288 ---~~~~~fD~Ii~nppf  302 (375)
T 4dcm_A          288 ---VEPFRFNAVLCNPPF  302 (375)
T ss_dssp             ---CCTTCEEEEEECCCC
T ss_pred             ---CCCCCeeEEEECCCc
Confidence               223479999977554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=97.79  E-value=9.2e-05  Score=68.30  Aligned_cols=86  Identities=19%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPN  147 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~  147 (413)
                      .+.+.+++.+. +.++..++|..+|.|+.+..+++.. .++|+|+|.++.+++.++++...  . +++.++.+++.+++ 
T Consensus        48 ~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-  124 (273)
T 3bus_A           48 RLTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-  124 (273)
T ss_dssp             HHHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-
T ss_pred             HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-
Confidence            35567777775 7889999999999999999998876 57999999999999999876543  2 37999999987753 


Q ss_pred             HHHhcCCCCCCccEEEEc
Q psy7191         148 ILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfD  165 (413)
                            .+.+.+|.|+..
T Consensus       125 ------~~~~~fD~v~~~  136 (273)
T 3bus_A          125 ------FEDASFDAVWAL  136 (273)
T ss_dssp             ------SCTTCEEEEEEE
T ss_pred             ------CCCCCccEEEEe
Confidence                  223479999864

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.79  E-value=5.3e-05  Score=69.23  Aligned_cols=91  Identities=21%  Similarity=0.194  Sum_probs=71.1

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~  147 (413)
                      |.+...+++.+. +.++..++|..+|.|..+..+++..+ ++|+|+|+++.+++.|+++++.  ..++.++.+++..   
T Consensus        77 ~~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~---  151 (235)
T 1jg1_A           77 PHMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK---  151 (235)
T ss_dssp             HHHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG---
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc---
Confidence            557778888886 78889999999999999999999887 8999999999999999887653  3478888888611   


Q ss_pred             HHHhcCCCCCCccEEEEcCCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      -+..    ...+|.|+.+.+..
T Consensus       152 ~~~~----~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A          152 GFPP----KAPYDVIIVTAGAP  169 (235)
T ss_dssp             CCGG----GCCEEEEEECSBBS
T ss_pred             CCCC----CCCccEEEECCcHH
Confidence            1111    12489999886653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.78  E-value=5.3e-05  Score=67.59  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=71.7

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~  146 (413)
                      |-+...+++.+. +.++..++|..+|.|..+..+++.. |+++|+|+|.++.+++.++++...  .+++.++++++... 
T Consensus        63 ~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-  140 (215)
T 2yxe_A           63 IHMVGMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLG-  140 (215)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC-
T ss_pred             HHHHHHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC-
Confidence            555667777775 7889999999999999999999987 668999999999999999887543  34788888876321 


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                        +..    .+.+|.|+.+.++.
T Consensus       141 --~~~----~~~fD~v~~~~~~~  157 (215)
T 2yxe_A          141 --YEP----LAPYDRIYTTAAGP  157 (215)
T ss_dssp             --CGG----GCCEEEEEESSBBS
T ss_pred             --CCC----CCCeeEEEECCchH
Confidence              111    23699999887664

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.78  E-value=0.00013  Score=69.58  Aligned_cols=93  Identities=17%  Similarity=0.207  Sum_probs=65.5

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCC---chhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGD---GNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~---GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L  149 (413)
                      +..++..|....+...++|.-||.   |.-+..+.+..|+++|+|+|.||.+++.|++++...+++.++++++.+....+
T Consensus        65 ~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~  144 (274)
T 2qe6_A           65 LVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYIL  144 (274)
T ss_dssp             HHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHH
T ss_pred             HHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhh
Confidence            345556663122347999999999   85555555556889999999999999999988765458999999999876443


Q ss_pred             Hhc----CCCCCCccEEEEc
Q psy7191         150 KNM----NNNFNSIDGIIMD  165 (413)
Q Consensus       150 ~~~----~~~~~~VDGILfD  165 (413)
                      ...    .++...+|+|++.
T Consensus       145 ~~~~~~~~~d~~~~d~v~~~  164 (274)
T 2qe6_A          145 NHPDVRRMIDFSRPAAIMLV  164 (274)
T ss_dssp             HSHHHHHHCCTTSCCEEEET
T ss_pred             ccchhhccCCCCCCEEEEEe
Confidence            211    1222357888743

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.78  E-value=7.8e-05  Score=67.17  Aligned_cols=84  Identities=14%  Similarity=0.098  Sum_probs=64.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--------------CCCeEE
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--------------DPRLVP  137 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--------------~~rv~~  137 (413)
                      .+.+.++.+. +.++..++|.-||.|.++..+++.  ..+|+|+|.++.|++.|+++...              ..++++
T Consensus        10 ~l~~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~   86 (203)
T 1pjz_A           10 DLQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI   86 (203)
T ss_dssp             HHHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred             HHHHHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence            4455566665 667889999999999999998886  45899999999999999886532              247899


Q ss_pred             EecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191         138 VYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       138 i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +++++.++...-.      +.+|.|+.
T Consensus        87 ~~~d~~~l~~~~~------~~fD~v~~  107 (203)
T 1pjz_A           87 WCGDFFALTARDI------GHCAAFYD  107 (203)
T ss_dssp             EEECCSSSTHHHH------HSEEEEEE
T ss_pred             EECccccCCcccC------CCEEEEEE
Confidence            9999887752210      25888873

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=97.78  E-value=4.7e-05  Score=69.38  Aligned_cols=86  Identities=17%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      ....++++.+. +.++..++|..+|.|..+..+++.+|.++|+|+|.++.+++.++++   .+++.++++++.++.    
T Consensus        20 ~~~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---~~~~~~~~~d~~~~~----   91 (259)
T 2p35_A           20 RPARDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---LPNTNFGKADLATWK----   91 (259)
T ss_dssp             HHHHHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH---STTSEEEECCTTTCC----
T ss_pred             HHHHHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---CCCcEEEECChhhcC----
Confidence            34456677775 6778899999999999999999998888999999999999999876   357889999887653    


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                          ..+.+|.|+....+
T Consensus        92 ----~~~~fD~v~~~~~l  105 (259)
T 2p35_A           92 ----PAQKADLLYANAVF  105 (259)
T ss_dssp             ----CSSCEEEEEEESCG
T ss_pred             ----ccCCcCEEEEeCch
Confidence                12469999976543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=97.77  E-value=9.6e-05  Score=65.85  Aligned_cols=101  Identities=17%  Similarity=0.204  Sum_probs=70.3

Q ss_pred             HHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          52 KNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        52 ~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      ..|.....-....|...... ..++++.+. +.++..++|..+|.|..+..+++.  +.+|+|+|.++.+++.++++.. 
T Consensus        14 ~~y~~~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-   88 (220)
T 3hnr_A           14 HTYDSFVQGEDIQYKEVFAH-YEDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP-   88 (220)
T ss_dssp             ----------CCTTTTTTTT-HHHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC-
T ss_pred             HHHHHHhhcchHhHHHHHHH-HHHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC-
Confidence            33444433344445444433 455666665 668899999999999999999887  5799999999999999988764 


Q ss_pred             CCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191         132 DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       132 ~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                       .++.++++++.++.       .. +.+|.|+...
T Consensus        89 -~~~~~~~~d~~~~~-------~~-~~fD~v~~~~  114 (220)
T 3hnr_A           89 -KEFSITEGDFLSFE-------VP-TSIDTIVSTY  114 (220)
T ss_dssp             -TTCCEESCCSSSCC-------CC-SCCSEEEEES
T ss_pred             -CceEEEeCChhhcC-------CC-CCeEEEEECc
Confidence             47889999987753       11 4799999764

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.76  E-value=3.8e-05  Score=69.73  Aligned_cols=94  Identities=14%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             cccchHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhcC------CCEEEEEeCCHHHHHHHHhhhcC-------CCC
Q psy7191          69 YPRTFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENIG------NVKVICLDRDKESFEKAKTLAAN-------DPR  134 (413)
Q Consensus        69 ~pvll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~p------~g~Via~DrD~~Al~~Ak~ll~~-------~~r  134 (413)
                      .|.+...+++.|. .+.++..++|..+|.|..+..+++..+      .++|+|+|+++.+++.|++++..       ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            4566777888883 267889999999999999999988764      37999999999999999886543       347


Q ss_pred             eEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         135 LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       135 v~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +.+++++..+.   +..    ...+|.|+.+.++.
T Consensus       147 v~~~~~d~~~~---~~~----~~~fD~I~~~~~~~  174 (227)
T 1r18_A          147 LLIVEGDGRKG---YPP----NAPYNAIHVGAAAP  174 (227)
T ss_dssp             EEEEESCGGGC---CGG----GCSEEEEEECSCBS
T ss_pred             eEEEECCcccC---CCc----CCCccEEEECCchH
Confidence            88888876531   111    13699999887663

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.75  E-value=9.1e-05  Score=70.67  Aligned_cols=82  Identities=12%  Similarity=0.109  Sum_probs=65.5

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhc
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~  152 (413)
                      +++.|..+.++..++|+.+|.|+.+..+++.. .++|+|+|.++.+++.|+++.+..  . ++.++.+++.+++      
T Consensus       108 l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------  180 (312)
T 3vc1_A          108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP------  180 (312)
T ss_dssp             HHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC------
T ss_pred             HHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC------
Confidence            55666436788999999999999999999885 579999999999999998876532  2 7999999987653      


Q ss_pred             CCCCCCccEEEEc
Q psy7191         153 NNNFNSIDGIIMD  165 (413)
Q Consensus       153 ~~~~~~VDGILfD  165 (413)
                       +..+.+|.|+..
T Consensus       181 -~~~~~fD~V~~~  192 (312)
T 3vc1_A          181 -FDKGAVTASWNN  192 (312)
T ss_dssp             -CCTTCEEEEEEE
T ss_pred             -CCCCCEeEEEEC
Confidence             223579999853

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=97.75  E-value=9.6e-05  Score=69.57  Aligned_cols=90  Identities=13%  Similarity=0.100  Sum_probs=71.9

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~  148 (413)
                      -.++.+++.+....++..++|..+|.|..+..+++.+|. ++|+|+|.++.+++.|+++....+ ++.++.+++.++.  
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~--   85 (284)
T 3gu3_A            8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE--   85 (284)
T ss_dssp             HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC--
T ss_pred             HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC--
Confidence            344555555544667899999999999999999999885 899999999999999998876555 8999999988643  


Q ss_pred             HHhcCCCCCCccEEEEcCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGv  168 (413)
                           . .+.+|.|+....+
T Consensus        86 -----~-~~~fD~v~~~~~l   99 (284)
T 3gu3_A           86 -----L-NDKYDIAICHAFL   99 (284)
T ss_dssp             -----C-SSCEEEEEEESCG
T ss_pred             -----c-CCCeeEEEECChh
Confidence                 1 2469999987643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.75  E-value=6e-05  Score=66.81  Aligned_cols=72  Identities=21%  Similarity=0.209  Sum_probs=59.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +.+++.++|..+|.|+.+..+.+. +..+|+|+|+++.+++.|+++..   ++.++++++.+++          +.+|.|
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~~~----------~~~D~v  114 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSEIS----------GKYDTW  114 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGGCC----------CCEEEE
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHHCC----------CCeeEE
Confidence            456789999999999999998876 55689999999999999988764   6888998876542          369999


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      ++|..+
T Consensus       115 ~~~~p~  120 (200)
T 1ne2_A          115 IMNPPF  120 (200)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            987554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=97.74  E-value=8.4e-05  Score=68.84  Aligned_cols=79  Identities=19%  Similarity=0.261  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      ..++..++|..+|.|..+..+++..|.++|+|+|.++.+++.++++....  +++.++.++..++.       ...+.+|
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~fD  107 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-------FEDSSFD  107 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-------SCTTCEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-------CCCCCee
Confidence            56789999999999999999999988899999999999999998876432  47999998876542       2235799


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|+....+
T Consensus       108 ~v~~~~~l  115 (276)
T 3mgg_A          108 HIFVCFVL  115 (276)
T ss_dssp             EEEEESCG
T ss_pred             EEEEechh
Confidence            99976543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.73  E-value=3.3e-05  Score=71.50  Aligned_cols=83  Identities=16%  Similarity=0.272  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ..+|+.++|.-||.|+.+..|++..| .+|+|+|++|.+++.|+++.+..+ ++.++.++..+   ++...  ..+.+|+
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~---~~~~~--~~~~FD~  131 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED---VAPTL--PDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH---HGGGS--CTTCEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHh---hcccc--cccCCce
Confidence            46789999999999999999887655 489999999999999998776544 78888776543   33222  2357999


Q ss_pred             EEEcCCCCcc
Q psy7191         162 IIMDVGISDS  171 (413)
Q Consensus       162 ILfDLGvSS~  171 (413)
                      |+||.=+++.
T Consensus       132 i~~D~~~~~~  141 (236)
T 3orh_A          132 ILYDTYPLSE  141 (236)
T ss_dssp             EEECCCCCBG
T ss_pred             EEEeeeeccc
Confidence            9999655443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.73  E-value=2.7e-05  Score=77.37  Aligned_cols=79  Identities=15%  Similarity=0.166  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      ..++..++|..||.|+.+..++...+.++|+|+|+|+.+++.|+++++..   ++++++++++.++..       ..+.+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~-------~~~~f  287 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ-------YVDSV  287 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG-------TCSCE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc-------ccCCc
Confidence            56788999999999999999988877779999999999999999876532   389999999887641       12469


Q ss_pred             cEEEEcCCC
Q psy7191         160 DGIIMDVGI  168 (413)
Q Consensus       160 DGILfDLGv  168 (413)
                      |.|+.|..|
T Consensus       288 D~Ii~npPy  296 (373)
T 3tm4_A          288 DFAISNLPY  296 (373)
T ss_dssp             EEEEEECCC
T ss_pred             CEEEECCCC
Confidence            999988776

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.73  E-value=1.1e-05  Score=75.06  Aligned_cols=96  Identities=14%  Similarity=0.220  Sum_probs=75.8

Q ss_pred             ccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEec
Q psy7191          64 IYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYG  140 (413)
Q Consensus        64 ~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~  140 (413)
                      .|++|+   |-+++.+++.+. +.+++.++|..+|.|+.|..+++..  ++|+|+|+|+.+++.++++.+..++++++++
T Consensus         6 ~~gq~fl~~~~~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~   82 (245)
T 1yub_A            6 KYSQNFLTSEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQ   82 (245)
T ss_dssp             CSCCCBCCCTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCS
T ss_pred             ccCCCCCCCHHHHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEEC
Confidence            466654   457888899886 7888999999999999999999884  7999999999999988776654458999999


Q ss_pred             CCCChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         141 KFSDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       141 nFs~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      ++.+++  +..    .+.+ .|+.|+.|.
T Consensus        83 D~~~~~--~~~----~~~f-~vv~n~Py~  104 (245)
T 1yub_A           83 DILQFQ--FPN----KQRY-KIVGNIPYH  104 (245)
T ss_dssp             CCTTTT--CCC----SSEE-EEEEECCSS
T ss_pred             ChhhcC--ccc----CCCc-EEEEeCCcc
Confidence            998764  110    1346 788888764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.73  E-value=3.1e-05  Score=74.84  Aligned_cols=80  Identities=9%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             hccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC--CEEEEEeCCHHHHHHHHhhhcCCCCeEE
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN--VKVICLDRDKESFEKAKTLAANDPRLVP  137 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~--g~Via~DrD~~Al~~Ak~ll~~~~rv~~  137 (413)
                      -.|++|+   |-+++.+++.+. +.++..++|..+|.|..|..+++..+.  ++|+|+|+|+.+++.++++.  .+++++
T Consensus        18 k~~GQ~fL~d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~~v~~   94 (279)
T 3uzu_A           18 KRFGQNFLVDHGVIDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GELLEL   94 (279)
T ss_dssp             CCCSCCEECCHHHHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GGGEEE
T ss_pred             ccCCccccCCHHHHHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CCCcEE
Confidence            4577776   457788888886 888999999999999999999998743  67999999999999998873  458999


Q ss_pred             EecCCCCh
Q psy7191         138 VYGKFSDL  145 (413)
Q Consensus       138 i~~nFs~l  145 (413)
                      +++++.++
T Consensus        95 i~~D~~~~  102 (279)
T 3uzu_A           95 HAGDALTF  102 (279)
T ss_dssp             EESCGGGC
T ss_pred             EECChhcC
Confidence            99998765

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.72  E-value=7.1e-05  Score=71.12  Aligned_cols=95  Identities=11%  Similarity=0.077  Sum_probs=72.3

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH--
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP--  146 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~--  146 (413)
                      -|.+++.+++.+. +.+++.++|..+|.|..|.  |++.+.++|+|+|+|+.+++.++++.+.+++++++++++..++  
T Consensus         6 d~~i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~--l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A            6 DQFVIDSIVSAIN-PQKGQAMVEIGPGLAALTE--PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             CHHHHHHHHHHHC-CCTTCCEEEECCTTTTTHH--HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             CHHHHHHHHHhcC-CCCcCEEEEECCCCcHHHH--hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            3567788888886 7888999999999999999  5654334499999999999999987655458999999987643  


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                      ......    +..+.|+.+|.|.-
T Consensus        83 ~~~~~~----~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           83 ELAEKM----GQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHHH----TSCEEEEEECCTTT
T ss_pred             Hhhccc----CCceEEEECCCCCc
Confidence            322100    13578999998843

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.72  E-value=5.7e-05  Score=72.86  Aligned_cols=93  Identities=16%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCCh
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDL  145 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l  145 (413)
                      .|.++..+++.+. ++++..++|..+|.|+.+..+++..+ +++|+|+|.++++++.|+++++.  .+++.++++++.+.
T Consensus        60 ~~~~~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           60 QPSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG  138 (317)
T ss_dssp             CHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence            3466778888886 88999999999999999999998877 58999999999999999887653  24799999887653


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      .   ..    .+.+|.|+.+.++.
T Consensus       139 ~---~~----~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A          139 V---PE----FSPYDVIFVTVGVD  155 (317)
T ss_dssp             C---GG----GCCEEEEEECSBBS
T ss_pred             c---cc----CCCeEEEEEcCCHH
Confidence            1   11    13699999887653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=97.70  E-value=0.00012  Score=65.24  Aligned_cols=73  Identities=10%  Similarity=0.073  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ..++..++|..+|.|..+..+++..  .+|+|+|.++.+++.|+++....++++++++++.++.        ..+.+|.|
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--------~~~~fD~v  118 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS--------TAELFDLI  118 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC--------CSCCEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC--------CCCCccEE
Confidence            5677899999999999999998874  5899999999999999988766568999999998764        12479999


Q ss_pred             EEc
Q psy7191         163 IMD  165 (413)
Q Consensus       163 LfD  165 (413)
                      +..
T Consensus       119 ~~~  121 (216)
T 3ofk_A          119 VVA  121 (216)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            864

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.70  E-value=9.3e-05  Score=63.57  Aligned_cols=85  Identities=14%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPN  147 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~  147 (413)
                      .+...+++.+. +.++..++|..+|.|..+..+++..  .+|+|+|.++.+++.++++.+.  . +++.++++++.+   
T Consensus        20 ~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---   93 (192)
T 1l3i_A           20 EVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE---   93 (192)
T ss_dssp             HHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH---
T ss_pred             HHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH---
Confidence            34445555565 7788999999999999999998876  7999999999999999886543  2 478888876532   


Q ss_pred             HHHhcCCCCCCccEEEEc
Q psy7191         148 ILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfD  165 (413)
                      .+...    ..+|.|+.+
T Consensus        94 ~~~~~----~~~D~v~~~  107 (192)
T 1l3i_A           94 ALCKI----PDIDIAVVG  107 (192)
T ss_dssp             HHTTS----CCEEEEEES
T ss_pred             hcccC----CCCCEEEEC
Confidence            33321    258988864

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.69  E-value=0.00012  Score=68.21  Aligned_cols=83  Identities=18%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~  148 (413)
                      +++.+++.+. +.++..++|..+|.|+.+..+++..+ .+|+|+|.++.+++.|+++.+..   +++.++++++.+++  
T Consensus        52 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--  127 (287)
T 1kpg_A           52 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--  127 (287)
T ss_dssp             HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--
Confidence            4556677775 78889999999999999999997764 49999999999999998876543   38999999875432  


Q ss_pred             HHhcCCCCCCccEEEEcC
Q psy7191         149 LKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDL  166 (413)
                              +.+|.|+...
T Consensus       128 --------~~fD~v~~~~  137 (287)
T 1kpg_A          128 --------EPVDRIVSIG  137 (287)
T ss_dssp             --------CCCSEEEEES
T ss_pred             --------CCeeEEEEeC
Confidence                    3699998653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.69  E-value=5.1e-05  Score=70.02  Aligned_cols=59  Identities=25%  Similarity=0.164  Sum_probs=46.7

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHh--cCCCEEEEEeCCHHHHHHHHhhhcCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN--IGNVKVICLDRDKESFEKAKTLAAND  132 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~--~p~g~Via~DrD~~Al~~Ak~ll~~~  132 (413)
                      ++.+++.+. ..++..++|..||.|..+..+++.  .+..+|+|+|+|+.|++.|++++...
T Consensus        40 ~~~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           40 FQRALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             HHHHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            344444443 345679999999999999999988  56789999999999999998765443

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=97.68  E-value=0.00015  Score=66.76  Aligned_cols=86  Identities=12%  Similarity=0.191  Sum_probs=66.6

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L  149 (413)
                      -+..+++.+. +.++..++|..||.|..+..+++..+  +|+|+|.++.+++.|+++...  .+++.++.+++.+++   
T Consensus        25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~---   98 (260)
T 1vl5_A           25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP---   98 (260)
T ss_dssp             CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC---
T ss_pred             HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC---
Confidence            3456666775 77889999999999998888887753  899999999999999887543  247999999987653   


Q ss_pred             HhcCCCCCCccEEEEcCC
Q psy7191         150 KNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLG  167 (413)
                          ++.+.+|.|+....
T Consensus        99 ----~~~~~fD~V~~~~~  112 (260)
T 1vl5_A           99 ----FTDERFHIVTCRIA  112 (260)
T ss_dssp             ----SCTTCEEEEEEESC
T ss_pred             ----CCCCCEEEEEEhhh
Confidence                22357999996643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.67  E-value=4.4e-05  Score=70.41  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C--CCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D--PRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~--~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      +++..++|+.+|.|.-|..+++.+| +++|+++|+++.+++.|+++++.  .  +++++++++..+   ++....  .+.
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~---~l~~~~--~~~  129 (221)
T 3dr5_A           55 NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLD---VMSRLA--NDS  129 (221)
T ss_dssp             TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHH---HGGGSC--TTC
T ss_pred             CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHH---HHHHhc--CCC
Confidence            3445899999999999999999885 79999999999999999887653  2  379999887543   444321  247


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|++|...
T Consensus       130 fD~V~~d~~~  139 (221)
T 3dr5_A          130 YQLVFGQVSP  139 (221)
T ss_dssp             EEEEEECCCT
T ss_pred             cCeEEEcCcH
Confidence            9999988543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.67  E-value=0.00034  Score=63.44  Aligned_cols=81  Identities=16%  Similarity=0.114  Sum_probs=63.3

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC-ChHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS-DLPNIL  149 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs-~l~~~L  149 (413)
                      .+++..+..+  +.++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++   .++++++++++. .++   
T Consensus        36 ~l~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~---  105 (226)
T 3m33_A           36 LTFDLWLSRL--LTPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN---APHADVYEWNGKGELP---  105 (226)
T ss_dssp             HHHHHHHHHH--CCTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH---CTTSEEEECCSCSSCC---
T ss_pred             HHHHHHHHhc--CCCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh---CCCceEEEcchhhccC---
Confidence            4566666554  357889999999999999999887  57999999999999999887   457899999884 332   


Q ss_pred             HhcCCC-CCCccEEEEc
Q psy7191         150 KNMNNN-FNSIDGIIMD  165 (413)
Q Consensus       150 ~~~~~~-~~~VDGILfD  165 (413)
                          .. .+.+|.|+..
T Consensus       106 ----~~~~~~fD~v~~~  118 (226)
T 3m33_A          106 ----AGLGAPFGLIVSR  118 (226)
T ss_dssp             ----TTCCCCEEEEEEE
T ss_pred             ----CcCCCCEEEEEeC
Confidence                12 2479999854

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=97.67  E-value=0.00011  Score=68.97  Aligned_cols=113  Identities=10%  Similarity=0.086  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHhHHhhhhh-----------ccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEE
Q psy7191          46 EEETLKKNLASLKRLSED-----------IYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVIC  114 (413)
Q Consensus        46 ~~e~~~~~~~sl~~~~~n-----------~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via  114 (413)
                      ..+++.++++-|.+-+..           .|..|+-+-+. ++..+. ..++..++|..+|+|..+..+....|+++|+|
T Consensus        32 ~~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~-~l~~~~-~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~  109 (249)
T 3g89_A           32 HLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLT-LLRLPL-WQGPLRVLDLGTGAGFPGLPLKIVRPELELVL  109 (249)
T ss_dssp             GHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHG-GGGSSC-CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechh-hhcccc-cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEE
Confidence            566778888877665432           22223211110 011111 35678999999999999999988889999999


Q ss_pred             EeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191         115 LDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       115 ~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +|.++.+++.|+++.+.  ..++++++++..++.   .... ..+.+|.|+.
T Consensus       110 vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~---~~~~-~~~~fD~I~s  157 (249)
T 3g89_A          110 VDATRKKVAFVERAIEVLGLKGARALWGRAEVLA---REAG-HREAYARAVA  157 (249)
T ss_dssp             EESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHT---TSTT-TTTCEEEEEE
T ss_pred             EECCHHHHHHHHHHHHHhCCCceEEEECcHHHhh---cccc-cCCCceEEEE
Confidence            99999999999886553  337999998764432   1100 1246999984

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.67  E-value=2.1e-05  Score=70.93  Aligned_cols=76  Identities=13%  Similarity=0.039  Sum_probs=58.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++..++|..+|.|..+..+++.. ..+|+|+|+++.+++.|+++.+..  +++++++++..+   ++..   ..+.+|.|
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~---~~~~---~~~~fD~V  126 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMS---FLAQ---KGTPHNIV  126 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHH---HHSS---CCCCEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH---HHhh---cCCCCCEE
Confidence            57899999999999999888764 258999999999999998876533  489999887543   3322   12469999


Q ss_pred             EEcCC
Q psy7191         163 IMDVG  167 (413)
Q Consensus       163 LfDLG  167 (413)
                      ++|..
T Consensus       127 ~~~~p  131 (202)
T 2fpo_A          127 FVDPP  131 (202)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            97644

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.66  E-value=0.00021  Score=64.75  Aligned_cols=87  Identities=16%  Similarity=0.161  Sum_probs=67.2

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~  146 (413)
                      |-....++..+. +.++..++|..+|.|..+..+++.  .++|+|+|.++.+++.|+++.+.  . +++.++++++.+..
T Consensus        77 ~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           77 PKDSFYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             chhHHHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            545555666665 778999999999999999999888  67999999999999999887543  2 47999988876531


Q ss_pred             HHHHhcCCCCCCccEEEEcC
Q psy7191         147 NILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDL  166 (413)
                        +     ....+|.|+.|.
T Consensus       154 --~-----~~~~~D~v~~~~  166 (248)
T 2yvl_A          154 --V-----PEGIFHAAFVDV  166 (248)
T ss_dssp             --C-----CTTCBSEEEECS
T ss_pred             --c-----CCCcccEEEECC
Confidence              0     123699999753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.66  E-value=0.00019  Score=65.06  Aligned_cols=103  Identities=12%  Similarity=-0.031  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHH
Q psy7191          47 EETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAK  126 (413)
Q Consensus        47 ~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak  126 (413)
                      .+.|++.|..-   ....+.....-.+.+.+..+. . +++.++|..+|.|..+..+++  +..+|+|+|.++.+++.|+
T Consensus        33 ~~~w~~~~~~~---~~~~~~~~~~~~l~~~~~~~~-~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~  105 (235)
T 3lcc_A           33 EGGWEKCWEEE---ITPWDQGRATPLIVHLVDTSS-L-PLGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKAN  105 (235)
T ss_dssp             HHHHHHHHHTT---CCTTCCSSCCHHHHHHHHTTC-S-CCEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHhcC---CCCcccCCCCHHHHHHHHhcC-C-CCCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHH
Confidence            34666666551   111222333445556666553 3 346999999999999988865  5678999999999999999


Q ss_pred             hhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191         127 TLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       127 ~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      ++....   .++.++++++.++.        ....+|.|+.
T Consensus       106 ~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD~v~~  138 (235)
T 3lcc_A          106 ETYGSSPKAEYFSFVKEDVFTWR--------PTELFDLIFD  138 (235)
T ss_dssp             HHHTTSGGGGGEEEECCCTTTCC--------CSSCEEEEEE
T ss_pred             HHhhccCCCcceEEEECchhcCC--------CCCCeeEEEE
Confidence            887653   27999999987643        1236888885

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.65  E-value=0.00014  Score=69.07  Aligned_cols=83  Identities=19%  Similarity=0.277  Sum_probs=67.4

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~  148 (413)
                      +++.+++.+. +.++..++|..+|.|+.+..+++.+ +++|+|+|.++.+++.|+++.+..   +++.++++++.+++  
T Consensus        78 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--  153 (318)
T 2fk8_A           78 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--  153 (318)
T ss_dssp             HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--
Confidence            3456677775 7888999999999999999999886 469999999999999998876543   37999999876542  


Q ss_pred             HHhcCCCCCCccEEEEcC
Q psy7191         149 LKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDL  166 (413)
                              +.+|.|+...
T Consensus       154 --------~~fD~v~~~~  163 (318)
T 2fk8_A          154 --------EPVDRIVSIE  163 (318)
T ss_dssp             --------CCCSEEEEES
T ss_pred             --------CCcCEEEEeC
Confidence                    3699999663

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=97.65  E-value=0.00021  Score=65.28  Aligned_cols=83  Identities=17%  Similarity=0.204  Sum_probs=64.6

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      ..+++.+. ..++..++|..+|.|..+..+++..+. +|+|+|.++.+++.|+++.. ..++.++.+++.+++       
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-------  103 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIA-------  103 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCC-------
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCC-------
Confidence            34455554 567899999999999999999887543 89999999999999988765 358999999886542       


Q ss_pred             CCCCCccEEEEcC
Q psy7191         154 NNFNSIDGIIMDV  166 (413)
Q Consensus       154 ~~~~~VDGILfDL  166 (413)
                      ...+.+|.|+...
T Consensus       104 ~~~~~fD~v~~~~  116 (253)
T 3g5l_A          104 IEPDAYNVVLSSL  116 (253)
T ss_dssp             CCTTCEEEEEEES
T ss_pred             CCCCCeEEEEEch
Confidence            2235799998754

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=97.65  E-value=5.2e-05  Score=67.95  Aligned_cols=75  Identities=25%  Similarity=0.313  Sum_probs=59.7

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHH----Hhhhc--CCCCeEEEecCCC
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKA----KTLAA--NDPRLVPVYGKFS  143 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~A----k~ll~--~~~rv~~i~~nFs  143 (413)
                      +-+..+.++.+. +.++..++|..||.|..+..+++..|.++|+|+|.++.+++.+    +++..  ..+++.+++++..
T Consensus        13 ~~~~~~~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~   91 (218)
T 3mq2_A           13 QEFSDAEFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAE   91 (218)
T ss_dssp             EECCHHHHHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCST
T ss_pred             cccCHHHHHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchh
Confidence            345567777776 7889999999999999999999998999999999999987752    22221  2348899998887


Q ss_pred             Ch
Q psy7191         144 DL  145 (413)
Q Consensus       144 ~l  145 (413)
                      ++
T Consensus        92 ~l   93 (218)
T 3mq2_A           92 RL   93 (218)
T ss_dssp             TC
T ss_pred             hC
Confidence            65

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.65  E-value=0.00019  Score=67.66  Aligned_cols=112  Identities=10%  Similarity=0.103  Sum_probs=74.7

Q ss_pred             CcccchhHHHHHHHHHhHHhhhhhccCCcc-ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCC
Q psy7191          40 NKFTIEEEETLKKNLASLKRLSEDIYNKKY-PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRD  118 (413)
Q Consensus        40 ~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~-pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD  118 (413)
                      +++..-+.+.|++.|+.=    ...+..+. .-.+.+.+..+..+.+++.++|.-||.|..+..+++.  ...|+|+|.+
T Consensus        26 ~~~~~~~~~~Wd~~y~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S   99 (252)
T 2gb4_A           26 QKNQVLTLEDWKEKWVTR----HISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEIS   99 (252)
T ss_dssp             TTTCCCCHHHHHHHHHHT----CCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSC
T ss_pred             cccccCCHHHHHHHHhcC----CCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECC
Confidence            455555667899888751    11121221 2133343443321457889999999999999888876  4589999999


Q ss_pred             HHHHHHHHhhhc-------------------CCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191         119 KESFEKAKTLAA-------------------NDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus       119 ~~Al~~Ak~ll~-------------------~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      +.|++.|+++..                   ...++.++++++.++...    .  .+.+|+|+
T Consensus       100 ~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~----~--~~~FD~V~  157 (252)
T 2gb4_A          100 EIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRA----N--IGKFDRIW  157 (252)
T ss_dssp             HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGG----C--CCCEEEEE
T ss_pred             HHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcc----c--CCCEEEEE
Confidence            999999976542                   124899999998876421    0  13689887

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=97.63  E-value=0.00014  Score=66.32  Aligned_cols=82  Identities=18%  Similarity=0.212  Sum_probs=62.8

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~  151 (413)
                      +.+.+..+. ..++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.|+++....+ ++.++++++.++.     
T Consensus        30 ~~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-----  101 (252)
T 1wzn_A           30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-----  101 (252)
T ss_dssp             HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-----
T ss_pred             HHHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcc-----
Confidence            445555553 466789999999999999999876  4689999999999999988765433 7889998876542     


Q ss_pred             cCCCCCCccEEEEc
Q psy7191         152 MNNNFNSIDGIIMD  165 (413)
Q Consensus       152 ~~~~~~~VDGILfD  165 (413)
                        . .+.+|.|++.
T Consensus       102 --~-~~~fD~v~~~  112 (252)
T 1wzn_A          102 --F-KNEFDAVTMF  112 (252)
T ss_dssp             --C-CSCEEEEEEC
T ss_pred             --c-CCCccEEEEc
Confidence              1 2468988853

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=97.63  E-value=8.8e-05  Score=68.84  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=70.4

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP  146 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~  146 (413)
                      ...|.+.+.+++.+. +.++..++|..+|.|..+..+++  +.++|+|+|.++.+++.++++.    ++.++++++.+++
T Consensus        17 ~~~~~~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~   89 (261)
T 3ege_A           17 VPDIRIVNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLA   89 (261)
T ss_dssp             CCCHHHHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTSCC
T ss_pred             cccHHHHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhhCC
Confidence            345667888888886 77889999999999999999886  6789999999999998775543    7999999987653


Q ss_pred             HHHHhcCCCCCCccEEEEcCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGv  168 (413)
                             .+.+.+|.|+....+
T Consensus        90 -------~~~~~fD~v~~~~~l  104 (261)
T 3ege_A           90 -------LPDKSVDGVISILAI  104 (261)
T ss_dssp             -------SCTTCBSEEEEESCG
T ss_pred             -------CCCCCEeEEEEcchH
Confidence                   223579999976554

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.61  E-value=6.7e-05  Score=68.47  Aligned_cols=77  Identities=17%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      +.+++.++|..||.|..+..+.+. +..+|+|+|.++.+++.|+++.+..+ ++.+++++..++   +..  +..+.+|.
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~---~~~--~~~~~fD~  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDV---APT--LPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHH---GGG--SCTTCEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHh---hcc--cCCCceEE
Confidence            467889999999999999888553 33489999999999999998765433 899998887553   221  22357999


Q ss_pred             EEEc
Q psy7191         162 IIMD  165 (413)
Q Consensus       162 ILfD  165 (413)
                      |+.|
T Consensus       132 V~~d  135 (236)
T 1zx0_A          132 ILYD  135 (236)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=97.61  E-value=0.00018  Score=65.26  Aligned_cols=82  Identities=20%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      ...++.+. ..++..++|..+|.|..+..+++.. ..+|+|+|.++.+++.|+++.....++.++++++..+.       
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-------  153 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-------  153 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-------
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC-------
Confidence            45566664 6678999999999999999998876 56899999999999999987654457888888876542       


Q ss_pred             CCCCCccEEEE
Q psy7191         154 NNFNSIDGIIM  164 (413)
Q Consensus       154 ~~~~~VDGILf  164 (413)
                      ...+.+|.|+.
T Consensus       154 ~~~~~fD~v~~  164 (254)
T 1xtp_A          154 LPPNTYDLIVI  164 (254)
T ss_dssp             CCSSCEEEEEE
T ss_pred             CCCCCeEEEEE
Confidence            22346899985

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.59  E-value=0.00011  Score=67.54  Aligned_cols=80  Identities=14%  Similarity=0.160  Sum_probs=60.9

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCC--C
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNF--N  157 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~--~  157 (413)
                      .++..++|..+|.|..+..+++.+| +++|+++|.++.+++.|+++.+.  . +++.++.++..+.   +..+....  +
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~---l~~l~~~~~~~  147 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT---LEQLTQGKPLP  147 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH---HHHHHTSSSCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH---HHHHHhcCCCC
Confidence            4567999999999999999999887 68999999999999999886543  3 3799998876442   22221111  3


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|++|.
T Consensus       148 ~fD~V~~d~  156 (232)
T 3cbg_A          148 EFDLIFIDA  156 (232)
T ss_dssp             CEEEEEECS
T ss_pred             CcCEEEECC
Confidence            699999773

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=97.58  E-value=0.00017  Score=67.65  Aligned_cols=85  Identities=22%  Similarity=0.285  Sum_probs=67.9

Q ss_pred             chHhHHhcc----CCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCC
Q psy7191          72 TFQTSASGL----NDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSD  144 (413)
Q Consensus        72 ll~evi~~L----~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~  144 (413)
                      +++.+++.+    . ..++..++|+.+|.|+.+..+++.+ +++|+|+|.++.+++.|+++...  . +++.++++++.+
T Consensus        66 ~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           66 TDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            456677777    4 6788999999999999999999886 46999999999999999876532  2 389999999887


Q ss_pred             hHHHHHhcCCCCCCccEEEEc
Q psy7191         145 LPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfD  165 (413)
                      ++       ++.+.+|.|+..
T Consensus       144 ~~-------~~~~~fD~v~~~  157 (297)
T 2o57_A          144 IP-------CEDNSYDFIWSQ  157 (297)
T ss_dssp             CS-------SCTTCEEEEEEE
T ss_pred             CC-------CCCCCEeEEEec
Confidence            53       223469999865

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=97.58  E-value=0.00044  Score=62.93  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-DPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      +.++..++|..+|.|..+..+++.  .++|+|+|.++.+++.++++... .+++.++++++.++.       +..+.+|.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~  107 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-------LPDESVHG  107 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-------SCTTCEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-------CCCCCeeE
Confidence            567889999999999999999876  57999999999999999887633 248999999987653       22346999


Q ss_pred             EEEcCC
Q psy7191         162 IIMDVG  167 (413)
Q Consensus       162 ILfDLG  167 (413)
                      |+....
T Consensus       108 v~~~~~  113 (263)
T 2yqz_A          108 VIVVHL  113 (263)
T ss_dssp             EEEESC
T ss_pred             EEECCc
Confidence            997543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.56  E-value=7.8e-05  Score=69.70  Aligned_cols=85  Identities=11%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNIL  149 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L  149 (413)
                      ....++++.+. ..+++.++|..+|.|..+..+++.  ..+|+|+|.++.+++.|+++....+ ++.++++++.++..  
T Consensus       107 ~~~~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~--  181 (286)
T 3m70_A          107 AIHGDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI--  181 (286)
T ss_dssp             CCCHHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC--
T ss_pred             chHHHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc--
Confidence            34566677665 457889999999999999999887  4699999999999999988765444 89999988765421  


Q ss_pred             HhcCCCCCCccEEEEcC
Q psy7191         150 KNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDL  166 (413)
                            .+.+|.|+.+.
T Consensus       182 ------~~~fD~i~~~~  192 (286)
T 3m70_A          182 ------QENYDFIVSTV  192 (286)
T ss_dssp             ------CSCEEEEEECS
T ss_pred             ------cCCccEEEEcc
Confidence                  24699999654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.56  E-value=9.6e-05  Score=65.15  Aligned_cols=85  Identities=18%  Similarity=0.139  Sum_probs=60.9

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~  151 (413)
                      +...++.+....++..++|+.+|.|..+..++.. ++.+|+|+|.++.+++.|+++.... .++.++++++.+++     
T Consensus        11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-----   84 (209)
T 2p8j_A           11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-----   84 (209)
T ss_dssp             HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-----
T ss_pred             HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-----
Confidence            3444444432456789999999999887777655 5679999999999999998765432 37888888877642     


Q ss_pred             cCCCCCCccEEEEc
Q psy7191         152 MNNNFNSIDGIIMD  165 (413)
Q Consensus       152 ~~~~~~~VDGILfD  165 (413)
                        .+.+.+|.|+..
T Consensus        85 --~~~~~fD~v~~~   96 (209)
T 2p8j_A           85 --FKDESMSFVYSY   96 (209)
T ss_dssp             --SCTTCEEEEEEC
T ss_pred             --CCCCceeEEEEc
Confidence              223468888853

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.56  E-value=0.00029  Score=63.50  Aligned_cols=84  Identities=19%  Similarity=0.263  Sum_probs=64.2

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L  149 (413)
                      ..+++.+...+   .++..++|..+|.|..+..+++.  +.+|+|+|.++.+++.++++.. ..++.++++++.+++   
T Consensus        41 ~~~~~~l~~~~---~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~---  111 (242)
T 3l8d_A           41 STIIPFFEQYV---KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLP---  111 (242)
T ss_dssp             TTHHHHHHHHS---CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCS---
T ss_pred             HHHHHHHHHHc---CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCC---
Confidence            34444444444   36789999999999999999887  5689999999999999988742 248999999987653   


Q ss_pred             HhcCCCCCCccEEEEcC
Q psy7191         150 KNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDL  166 (413)
                          .+.+.+|.|+...
T Consensus       112 ----~~~~~fD~v~~~~  124 (242)
T 3l8d_A          112 ----FENEQFEAIMAIN  124 (242)
T ss_dssp             ----SCTTCEEEEEEES
T ss_pred             ----CCCCCccEEEEcC
Confidence                2235799998643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.54  E-value=0.00029  Score=62.41  Aligned_cols=73  Identities=19%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|..+|.|..+..+.+ .+.++|+|+|.++.+++.|+++....+  ++.++++++....         .+.+|.
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---------~~~fD~  128 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV---------DGKFDL  128 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---------CSCEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---------CCCceE
Confidence            4678999999999998888665 567799999999999999988765332  5899999876531         247999


Q ss_pred             EEEcC
Q psy7191         162 IIMDV  166 (413)
Q Consensus       162 ILfDL  166 (413)
                      |+.+.
T Consensus       129 i~~~~  133 (205)
T 3grz_A          129 IVANI  133 (205)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            99874

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.54  E-value=0.00016  Score=69.44  Aligned_cols=96  Identities=16%  Similarity=0.018  Sum_probs=70.0

Q ss_pred             hccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCC
Q psy7191          63 DIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF  142 (413)
Q Consensus        63 n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nF  142 (413)
                      ..+..|.|-..+.+++.+. +.++..++|.-||.|..+..++++  ..+|+|+|.++.+++.|+++....    +++.++
T Consensus        24 ~~~~~~~~~~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~   96 (261)
T 3iv6_A           24 IGRVAARPSDRENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADR----CVTIDL   96 (261)
T ss_dssp             TSCGGGSCCHHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSS----CCEEEE
T ss_pred             HhhccccHHHHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhc----cceeee
Confidence            3445556888899999996 888999999999999999999876  468999999999999999876542    234444


Q ss_pred             CChHH-HHHhcCCCCCCccEEEEcCCC
Q psy7191         143 SDLPN-ILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       143 s~l~~-~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+++. .....   .+.+|.|+.+..+
T Consensus        97 ~~~~~~~~~~~---~~~fD~Vv~~~~l  120 (261)
T 3iv6_A           97 LDITAEIPKEL---AGHFDFVLNDRLI  120 (261)
T ss_dssp             CCTTSCCCGGG---TTCCSEEEEESCG
T ss_pred             eeccccccccc---CCCccEEEEhhhh
Confidence            44321 00011   1368999987554

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=97.54  E-value=0.00012  Score=72.56  Aligned_cols=78  Identities=13%  Similarity=0.096  Sum_probs=61.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCC-hHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSD-LPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~-l~~~L~~~~~~~~~VD  160 (413)
                      .++..++|+. |.|..+..++...|.++|+|+|+|+.+++.|+++.+.  ..+++++++++.+ ++..+      .+.+|
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~------~~~fD  243 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYA------LHKFD  243 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTT------SSCBS
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhc------cCCcc
Confidence            3578999999 9999999888776778999999999999999887653  2389999999876 42111      13699


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|++|..+
T Consensus       244 ~Vi~~~p~  251 (373)
T 2qm3_A          244 TFITDPPE  251 (373)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCCC
Confidence            99987544

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.54  E-value=0.00022  Score=65.69  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=55.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +++.++|..+|.|..+..+++..  .+|+|+|.++.+++.|+++.   +++.++++++.++..        .+.+|.|+.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~~--------~~~fD~v~~  116 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN---PDAVLHHGDMRDFSL--------GRRFSAVTC  116 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC---TTSEEEECCTTTCCC--------SCCEEEEEE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC---CCCEEEECChHHCCc--------cCCcCEEEE
Confidence            56899999999999999998773  58999999999999998874   368888888876531        246888886


Q ss_pred             cC
Q psy7191         165 DV  166 (413)
Q Consensus       165 DL  166 (413)
                      ..
T Consensus       117 ~~  118 (263)
T 3pfg_A          117 MF  118 (263)
T ss_dssp             CT
T ss_pred             cC
Confidence            54

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.54  E-value=0.00031  Score=61.80  Aligned_cols=86  Identities=16%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCCh
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDL  145 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l  145 (413)
                      ....-.+.+.+..+.   ++ .++|..+|.|..+..+++.  ..+|+|+|.++.+++.|+++..... ++.++++++.++
T Consensus        15 ~~~~~~l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~   88 (202)
T 2kw5_A           15 TEPNDFLVSVANQIP---QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADF   88 (202)
T ss_dssp             CCCCSSHHHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTB
T ss_pred             cCchHHHHHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhc
Confidence            334445666666653   55 9999999999999888875  4699999999999999988764322 789999988765


Q ss_pred             HHHHHhcCCCCCCccEEEEc
Q psy7191         146 PNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfD  165 (413)
                      +       .+.+.+|.|+..
T Consensus        89 ~-------~~~~~fD~v~~~  101 (202)
T 2kw5_A           89 D-------IVADAWEGIVSI  101 (202)
T ss_dssp             S-------CCTTTCSEEEEE
T ss_pred             C-------CCcCCccEEEEE
Confidence            2       223469999863

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.52  E-value=0.00038  Score=64.26  Aligned_cols=71  Identities=21%  Similarity=0.311  Sum_probs=58.7

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .++..++|..+|.|..+..+++..|.++|+|+|.++.+++.|+++.   +++.++.+++.+++       +..+.+|.|+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-------~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-------FSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-------BCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCC-------CCCCceeEEE
Confidence            5788999999999999999999888889999999999999998764   46788888877653       1224689998


Q ss_pred             E
Q psy7191         164 M  164 (413)
Q Consensus       164 f  164 (413)
                      .
T Consensus       154 ~  154 (269)
T 1p91_A          154 R  154 (269)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.52  E-value=0.00018  Score=63.62  Aligned_cols=97  Identities=12%  Similarity=0.143  Sum_probs=67.8

Q ss_pred             hhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC
Q psy7191          62 EDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK  141 (413)
Q Consensus        62 ~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n  141 (413)
                      ...+..+.+....++++.+. ..++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.|+++    .++.++..+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~  102 (227)
T 3e8s_A           30 HGAIESRRQVTDQAILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA----GAGEVHLAS  102 (227)
T ss_dssp             HTCCHHHHHTHHHHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT----CSSCEEECC
T ss_pred             ccccccccccccHHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh----cccccchhh
Confidence            34444555556677777776 566799999999999999999877  56899999999999999876    345566666


Q ss_pred             CCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         142 FSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       142 Fs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      +.++...   .......+|.|+....+
T Consensus       103 ~~~~~~~---~~~~~~~fD~v~~~~~l  126 (227)
T 3e8s_A          103 YAQLAEA---KVPVGKDYDLICANFAL  126 (227)
T ss_dssp             HHHHHTT---CSCCCCCEEEEEEESCC
T ss_pred             HHhhccc---ccccCCCccEEEECchh
Confidence            5443211   11112348888875443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.51  E-value=0.00017  Score=61.78  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +++++.+. +.++..++|..+|.|..+..+++..  .+|+|+|.++.+++.++++   .+++.+++++       +   .
T Consensus         7 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d-------~---~   70 (170)
T 3i9f_A            7 EEYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK---FDSVITLSDP-------K---E   70 (170)
T ss_dssp             TTTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH---CTTSEEESSG-------G---G
T ss_pred             HHHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh---CCCcEEEeCC-------C---C
Confidence            34455554 6788899999999999999999876  3899999999999999887   4578888887       1   1


Q ss_pred             CCCCCccEEEEcCC
Q psy7191         154 NNFNSIDGIIMDVG  167 (413)
Q Consensus       154 ~~~~~VDGILfDLG  167 (413)
                      ...+.+|.|+....
T Consensus        71 ~~~~~~D~v~~~~~   84 (170)
T 3i9f_A           71 IPDNSVDFILFANS   84 (170)
T ss_dssp             SCTTCEEEEEEESC
T ss_pred             CCCCceEEEEEccc
Confidence            22347999996543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.50  E-value=0.00019  Score=73.32  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC----CCeEEEecCCCCh-HHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND----PRLVPVYGKFSDL-PNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~----~rv~~i~~nFs~l-~~~L~~~~~~~~~V  159 (413)
                      +|..++|+++|.|+.+.++...  .++|+|+|+|+.+++.|+++++..    .++++++++..+. .. +..     ..+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~~~-----~~f  164 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-IKT-----FHP  164 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-HHH-----HCC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-ccC-----CCc
Confidence            5789999999999999887655  469999999999999998876533    4899999997653 32 211     259


Q ss_pred             cEEEEcCCCC
Q psy7191         160 DGIIMDVGIS  169 (413)
Q Consensus       160 DGILfDLGvS  169 (413)
                      |.|++|-.+.
T Consensus       165 DvV~lDPPrr  174 (410)
T 3ll7_A          165 DYIYVDPARR  174 (410)
T ss_dssp             SEEEECCEEC
T ss_pred             eEEEECCCCc
Confidence            9999776664

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.50  E-value=0.00018  Score=64.54  Aligned_cols=87  Identities=15%  Similarity=0.074  Sum_probs=63.2

Q ss_pred             ccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~  147 (413)
                      ..+.+.+.+.+.. ..++..++|..+|.|.++..+++.  ..+|+|+|.++.+++.++++....+ ++.++++++.++. 
T Consensus        21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-   97 (246)
T 1y8c_A           21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-   97 (246)
T ss_dssp             HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-
Confidence            3344444454431 126789999999999999999887  4689999999999999988765433 7888888775532 


Q ss_pred             HHHhcCCCCCCccEEEEcC
Q psy7191         148 ILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDL  166 (413)
                            .+ +.+|.|+...
T Consensus        98 ------~~-~~fD~v~~~~  109 (246)
T 1y8c_A           98 ------IN-RKFDLITCCL  109 (246)
T ss_dssp             ------CS-CCEEEEEECT
T ss_pred             ------cc-CCceEEEEcC
Confidence                  11 4689888643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.49  E-value=0.0005  Score=63.71  Aligned_cols=78  Identities=15%  Similarity=0.067  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +.++..++|..+|.|+.+..+++. +.++|+|+|.++.+++.|+++....   .++.++++++.++.     .. ..+.+
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-~~~~f  134 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-----MD-LGKEF  134 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-----CC-CSSCE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc-----cC-CCCCc
Confidence            357889999999999999997765 5669999999999999998876543   27899999887652     10 23579


Q ss_pred             cEEEEcCC
Q psy7191         160 DGIIMDVG  167 (413)
Q Consensus       160 DGILfDLG  167 (413)
                      |.|+.+..
T Consensus       135 D~v~~~~~  142 (298)
T 1ri5_A          135 DVISSQFS  142 (298)
T ss_dssp             EEEEEESC
T ss_pred             CEEEECch
Confidence            99997743

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=97.49  E-value=0.0002  Score=66.12  Aligned_cols=89  Identities=12%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHH------HHHHHHhhhcCC---CCeEEEecC-C
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKE------SFEKAKTLAAND---PRLVPVYGK-F  142 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~------Al~~Ak~ll~~~---~rv~~i~~n-F  142 (413)
                      ..+++.+. +.++..++|..+|.|+.+..+++.. |+++|+|+|.++.      +++.|+++.+..   +++++++++ +
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            35566665 7788999999999999999999997 7789999999997      888888876543   389999987 4


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ....  +   .+..+.+|.|+....+
T Consensus       112 ~~~~--~---~~~~~~fD~v~~~~~l  132 (275)
T 3bkx_A          112 SDDL--G---PIADQHFDRVVLAHSL  132 (275)
T ss_dssp             TTCC--G---GGTTCCCSEEEEESCG
T ss_pred             hhcc--C---CCCCCCEEEEEEccch
Confidence            3211  1   1123479999965443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.49  E-value=0.00038  Score=61.83  Aligned_cols=78  Identities=15%  Similarity=0.171  Sum_probs=58.6

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHh
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~  151 (413)
                      .+.+.+..+   .++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++.    ++.++.+++..++     
T Consensus        33 ~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~-----   98 (211)
T 3e23_A           33 TLTKFLGEL---PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL----GRPVRTMLFHQLD-----   98 (211)
T ss_dssp             HHHHHHTTS---CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC-----
T ss_pred             HHHHHHHhc---CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc----CCceEEeeeccCC-----
Confidence            444444444   46889999999999999999876  569999999999999998875    3555677766553     


Q ss_pred             cCCCCCCccEEEEcC
Q psy7191         152 MNNNFNSIDGIIMDV  166 (413)
Q Consensus       152 ~~~~~~~VDGILfDL  166 (413)
                         ..+.+|.|+...
T Consensus        99 ---~~~~fD~v~~~~  110 (211)
T 3e23_A           99 ---AIDAYDAVWAHA  110 (211)
T ss_dssp             ---CCSCEEEEEECS
T ss_pred             ---CCCcEEEEEecC
Confidence               124688888643

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=97.48  E-value=0.00026  Score=64.64  Aligned_cols=85  Identities=19%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L  149 (413)
                      .....++.+. +.++..++|..+|.|..+..+++..  .+|+|+|.++.+++.++++.+.  .+++.++++++..++   
T Consensus         9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---   82 (239)
T 1xxl_A            9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP---   82 (239)
T ss_dssp             HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC---
T ss_pred             CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC---
Confidence            3456677786 8899999999999999999888775  4899999999999999876543  247999999887643   


Q ss_pred             HhcCCCCCCccEEEEcC
Q psy7191         150 KNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDL  166 (413)
                          ...+.+|.|+...
T Consensus        83 ----~~~~~fD~v~~~~   95 (239)
T 1xxl_A           83 ----FPDDSFDIITCRY   95 (239)
T ss_dssp             ----SCTTCEEEEEEES
T ss_pred             ----CCCCcEEEEEECC
Confidence                2235799999653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=97.48  E-value=0.00036  Score=61.37  Aligned_cols=55  Identities=18%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC--CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG--NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP  146 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p--~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~  146 (413)
                      ++++..++|..+|.|+.|..+++.+|  .++|+|+|+++.+         ..+++.++++++.+..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchh
Confidence            45788999999999999999999987  6899999999832         1347888999887653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.47  E-value=0.0002  Score=65.29  Aligned_cols=74  Identities=19%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|..+|.|..+..+++.. ..+|+|+|.++.+++.|+++....  .++.++.+++.++.       ...+.+|.
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------~~~~~fD~  149 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-------PEPDSYDV  149 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-------CCSSCEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-------CCCCCEEE
Confidence            367899999999999999988876 569999999999999998876543  26888888765432       22346999


Q ss_pred             EEEc
Q psy7191         162 IIMD  165 (413)
Q Consensus       162 ILfD  165 (413)
                      |+.+
T Consensus       150 v~~~  153 (241)
T 2ex4_A          150 IWIQ  153 (241)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9866

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.46  E-value=0.00011  Score=67.93  Aligned_cols=93  Identities=22%  Similarity=0.126  Sum_probs=66.4

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCH-HHHHHH---HhhhcC--CCCeEEEecCC
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDK-ESFEKA---KTLAAN--DPRLVPVYGKF  142 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~-~Al~~A---k~ll~~--~~rv~~i~~nF  142 (413)
                      +|--.++.++.+  ..++..++|..||+|..+..+++..|++.|+|+|.++ .+++.|   +++.+.  .+++.+++++.
T Consensus        10 ~~~~~~~~~~~~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~   87 (225)
T 3p2e_A           10 VDLSKDELTEII--GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA   87 (225)
T ss_dssp             ECCCHHHHHHHH--TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBT
T ss_pred             ccCCHHHHHHHh--CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCH
Confidence            344455666555  4678899999999999999998878889999999994 444444   665433  34799999998


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      .+++...      ...||.|.+++.+.
T Consensus        88 ~~l~~~~------~d~v~~i~~~~~~~  108 (225)
T 3p2e_A           88 ESLPFEL------KNIADSISILFPWG  108 (225)
T ss_dssp             TBCCGGG------TTCEEEEEEESCCH
T ss_pred             HHhhhhc------cCeEEEEEEeCCCc
Confidence            8774311      12477777766543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.46  E-value=0.00013  Score=61.29  Aligned_cols=86  Identities=14%  Similarity=0.134  Sum_probs=61.8

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH--H
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI--L  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~--L  149 (413)
                      +.+.++.+.-+.++..++|..+|.|+.+..+++.+ |+++++|+|.++ +++        .+++.++++++.+++..  +
T Consensus        10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~--------~~~~~~~~~d~~~~~~~~~~   80 (180)
T 1ej0_A           10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP--------IVGVDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC--------CTTEEEEESCTTSHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc--------cCcEEEEEcccccchhhhhh
Confidence            34555554335678899999999999999999986 668999999998 542        25789999998886521  1


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                      ... ++.+.+|.|+.|..+
T Consensus        81 ~~~-~~~~~~D~i~~~~~~   98 (180)
T 1ej0_A           81 LER-VGDSKVQVVMSDMAP   98 (180)
T ss_dssp             HHH-HTTCCEEEEEECCCC
T ss_pred             hcc-CCCCceeEEEECCCc
Confidence            110 112469999987654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=97.46  E-value=0.00041  Score=64.67  Aligned_cols=84  Identities=18%  Similarity=0.168  Sum_probs=68.2

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI  148 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~  148 (413)
                      .+-+.+.+++.+. +.++..++|..+|.|..+..+++  +.++|+|+|.++.+++.++++.   +++.++.+++.+++  
T Consensus        42 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~--  113 (279)
T 3ccf_A           42 VWQYGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY---PHLHFDVADARNFR--  113 (279)
T ss_dssp             CSSSCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCC--
T ss_pred             HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCC--
Confidence            3556777888886 77889999999999999999887  6789999999999999998764   56888888887653  


Q ss_pred             HHhcCCCCCCccEEEEcC
Q psy7191         149 LKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDL  166 (413)
                           . .+.+|.|+...
T Consensus       114 -----~-~~~fD~v~~~~  125 (279)
T 3ccf_A          114 -----V-DKPLDAVFSNA  125 (279)
T ss_dssp             -----C-SSCEEEEEEES
T ss_pred             -----c-CCCcCEEEEcc
Confidence                 1 24699999654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=97.45  E-value=0.00065  Score=61.03  Aligned_cols=83  Identities=17%  Similarity=0.202  Sum_probs=62.7

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      ..+...+. ..++..++|..+|.|..+..+++. +..+|+|+|.++.+++.|+++... .++.++++++.++.       
T Consensus        33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-------  102 (243)
T 3bkw_A           33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLH-------  102 (243)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCC-------
T ss_pred             HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhcc-------
Confidence            34455554 567889999999999999998877 334899999999999999887543 37888888876542       


Q ss_pred             CCCCCccEEEEcC
Q psy7191         154 NNFNSIDGIIMDV  166 (413)
Q Consensus       154 ~~~~~VDGILfDL  166 (413)
                      ...+.+|.|+...
T Consensus       103 ~~~~~fD~v~~~~  115 (243)
T 3bkw_A          103 LPQDSFDLAYSSL  115 (243)
T ss_dssp             CCTTCEEEEEEES
T ss_pred             CCCCCceEEEEec
Confidence            2234689988654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.45  E-value=4.9e-05  Score=70.66  Aligned_cols=78  Identities=17%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHh----cCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILEN----IGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~----~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .+++.++|..+|.|+.|..+++.    .|+++|+|+|+++.+++.|+..   .+++++++++..++.. +...  ....+
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---~~~v~~~~gD~~~~~~-l~~~--~~~~f  153 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---MENITLHQGDCSDLTT-FEHL--REMAH  153 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---CTTEEEEECCSSCSGG-GGGG--SSSCS
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---CCceEEEECcchhHHH-HHhh--ccCCC
Confidence            34679999999999999999887    4789999999999999887632   2589999999887521 1111  11259


Q ss_pred             cEEEEcCC
Q psy7191         160 DGIIMDVG  167 (413)
Q Consensus       160 DGILfDLG  167 (413)
                      |.|++|.+
T Consensus       154 D~I~~d~~  161 (236)
T 2bm8_A          154 PLIFIDNA  161 (236)
T ss_dssp             SEEEEESS
T ss_pred             CEEEECCc
Confidence            99998876

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.44  E-value=0.00024  Score=70.71  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=61.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +++..++|+.+|.|+.|..++.. +..+|+|+|+++.|++.|+++.+.  .. ++++++++..++...+...+   ..+|
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~---~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG---EKFD  291 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT---CCEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhC---CCCC
Confidence            47889999999999999999876 446999999999999999886543  23 79999988655433332212   3699


Q ss_pred             EEEEcCC
Q psy7191         161 GIIMDVG  167 (413)
Q Consensus       161 GILfDLG  167 (413)
                      .|++|..
T Consensus       292 ~Vi~dpP  298 (396)
T 2as0_A          292 IVVLDPP  298 (396)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9997644

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=97.44  E-value=0.00032  Score=61.01  Aligned_cols=82  Identities=13%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~  150 (413)
                      ...+++.+. ..+++.++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++...  .+++.++++++.++.    
T Consensus        21 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~----   93 (199)
T 2xvm_A           21 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLT----   93 (199)
T ss_dssp             CHHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCC----
T ss_pred             cHHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCC----
Confidence            345666665 567789999999999999998876  56999999999999999876542  337888888876542    


Q ss_pred             hcCCCCCCccEEEEc
Q psy7191         151 NMNNNFNSIDGIIMD  165 (413)
Q Consensus       151 ~~~~~~~~VDGILfD  165 (413)
                         . .+.+|.|+..
T Consensus        94 ---~-~~~~D~v~~~  104 (199)
T 2xvm_A           94 ---F-DRQYDFILST  104 (199)
T ss_dssp             ---C-CCCEEEEEEE
T ss_pred             ---C-CCCceEEEEc
Confidence               1 2468988844

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=97.43  E-value=0.00031  Score=65.56  Aligned_cols=84  Identities=17%  Similarity=0.245  Sum_probs=65.1

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L  149 (413)
                      +.+.+..+. + ++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.|+++.+..   +++.++++++.++....
T Consensus        58 l~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  133 (285)
T 4htf_A           58 LDRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHL  133 (285)
T ss_dssp             HHHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGC
T ss_pred             HHHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhc
Confidence            445555564 3 3679999999999999998887  569999999999999999876543   38999999987765321


Q ss_pred             HhcCCCCCCccEEEEcC
Q psy7191         150 KNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDL  166 (413)
                            .+.+|.|+...
T Consensus       134 ------~~~fD~v~~~~  144 (285)
T 4htf_A          134 ------ETPVDLILFHA  144 (285)
T ss_dssp             ------SSCEEEEEEES
T ss_pred             ------CCCceEEEECc
Confidence                  24799999754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.42  E-value=0.0002  Score=70.07  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=59.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .++..++|+.+|.|+.+.. +.  +..+|+|+|.++.|++.|+++.+.  . +++++++++..++.          ..+|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~fD  260 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKGN  260 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCCc
Confidence            4788999999999999988 66  467999999999999999886543  2 37999999876542          3699


Q ss_pred             EEEEcCCCCc
Q psy7191         161 GIIMDVGISD  170 (413)
Q Consensus       161 GILfDLGvSS  170 (413)
                      .|++|.....
T Consensus       261 ~Vi~dpP~~~  270 (336)
T 2yx1_A          261 RVIMNLPKFA  270 (336)
T ss_dssp             EEEECCTTTG
T ss_pred             EEEECCcHhH
Confidence            9998865543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.42  E-value=0.00029  Score=62.98  Aligned_cols=81  Identities=12%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +.+++.+....++..++|.-+|.|..+..+++..+  .|+|+|.++.+++.|+++...  ++.++++++.++   .    
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~--~v~~~~~d~~~~---~----   99 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKD--GITYIHSRFEDA---Q----   99 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGC---C----
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhC--CeEEEEccHHHc---C----
Confidence            33444443223567899999999999999988755  699999999999999887643  789999887654   1    


Q ss_pred             CCCCCccEEEEcC
Q psy7191         154 NNFNSIDGIIMDV  166 (413)
Q Consensus       154 ~~~~~VDGILfDL  166 (413)
                       ..+.+|.|+...
T Consensus       100 -~~~~fD~v~~~~  111 (250)
T 2p7i_A          100 -LPRRYDNIVLTH  111 (250)
T ss_dssp             -CSSCEEEEEEES
T ss_pred             -cCCcccEEEEhh
Confidence             134699999654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=97.42  E-value=0.00071  Score=60.19  Aligned_cols=83  Identities=19%  Similarity=0.192  Sum_probs=62.7

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-------CeEEEecCCC
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-------RLVPVYGKFS  143 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-------rv~~i~~nFs  143 (413)
                      .+...+...+   +++..++|..+|.|..+..+++.  ..+|+|+|+++.+++.++++.....       ++.++.+++.
T Consensus        19 ~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~   93 (235)
T 3sm3_A           19 DLYPIIHNYL---QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS   93 (235)
T ss_dssp             CCCTTHHHHC---CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTT
T ss_pred             HHHHHHHHhC---CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccc
Confidence            3344444444   47889999999999999999887  5699999999999999988765421       5788888887


Q ss_pred             ChHHHHHhcCCCCCCccEEEEc
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      .+.       ...+.+|.|+..
T Consensus        94 ~~~-------~~~~~~D~v~~~  108 (235)
T 3sm3_A           94 SLS-------FHDSSFDFAVMQ  108 (235)
T ss_dssp             SCC-------SCTTCEEEEEEE
T ss_pred             ccC-------CCCCceeEEEEc
Confidence            653       223468999864

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.40  E-value=0.00075  Score=57.95  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=60.5

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      ...+..+  +.++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++.   +++.++++++.++.       
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~~-------  102 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-------  102 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---TTSEEEECCTTTSC-------
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC---CCCcEEEcccccCC-------
Confidence            3445555  357889999999999999998876  568999999999999998865   35888888877642       


Q ss_pred             CCCCCccEEEEc
Q psy7191         154 NNFNSIDGIIMD  165 (413)
Q Consensus       154 ~~~~~VDGILfD  165 (413)
                      ++.+.+|.|+.+
T Consensus       103 ~~~~~~D~i~~~  114 (195)
T 3cgg_A          103 ISETDFDLIVSA  114 (195)
T ss_dssp             CCCCCEEEEEEC
T ss_pred             CCCCceeEEEEC
Confidence            223468999864

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=97.40  E-value=0.0004  Score=62.29  Aligned_cols=85  Identities=14%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             ccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191          64 IYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS  143 (413)
Q Consensus        64 ~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs  143 (413)
                      .|..+...+.+.+...+   .++..++|..+|.|..+..+++..+  +|+|+|.++.+++.|+++.   +++.++++++.
T Consensus        22 ~~~~~~~~~~~~l~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~   93 (239)
T 3bxo_A           22 DYAAEASDIADLVRSRT---PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRL---PDATLHQGDMR   93 (239)
T ss_dssp             CHHHHHHHHHHHHHHHC---TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHC---TTCEEEECCTT
T ss_pred             hHHHHHHHHHHHHHHhc---CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhC---CCCEEEECCHH
Confidence            34444433333333333   4678999999999999999998865  8999999999999998764   46788888876


Q ss_pred             ChHHHHHhcCCCCCCccEEEE
Q psy7191         144 DLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILf  164 (413)
                      ++.       . .+.+|.|+.
T Consensus        94 ~~~-------~-~~~~D~v~~  106 (239)
T 3bxo_A           94 DFR-------L-GRKFSAVVS  106 (239)
T ss_dssp             TCC-------C-SSCEEEEEE
T ss_pred             Hcc-------c-CCCCcEEEE
Confidence            642       1 236888874

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.39  E-value=0.00025  Score=70.41  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=59.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++..++|+.+|.|+.|..++..  ..+|+|+|+++.|++.|+++.+.  ..++.+++++..++...+...+   ..+|.|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~---~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEG---ERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTT---CCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcC---CCeeEE
Confidence            6779999999999999999987  56899999999999999887543  2358999988655433332212   369999


Q ss_pred             EEcCC
Q psy7191         163 IMDVG  167 (413)
Q Consensus       163 LfDLG  167 (413)
                      ++|..
T Consensus       284 i~dpP  288 (382)
T 1wxx_A          284 VLDPP  288 (382)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            97543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=97.39  E-value=0.00023  Score=67.59  Aligned_cols=75  Identities=15%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHH-HhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLIL-ENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aIL-e~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      +.++..++|..||.|..+..++ ...|+++|+|+|+++.+++.|+++.....   +++++++++.++.       .. +.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~-~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-------TR-EG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-------CC-SC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-------cc-CC
Confidence            4678899999999999999886 45688999999999999999998876532   6999999987642       22 47


Q ss_pred             ccEEEEc
Q psy7191         159 IDGIIMD  165 (413)
Q Consensus       159 VDGILfD  165 (413)
                      +|.|+.+
T Consensus       188 fD~v~~~  194 (305)
T 3ocj_A          188 YDLLTSN  194 (305)
T ss_dssp             EEEEECC
T ss_pred             eEEEEEC
Confidence            9999954

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.38  E-value=0.00064  Score=64.65  Aligned_cols=94  Identities=12%  Similarity=0.073  Sum_probs=65.3

Q ss_pred             cchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---------CCCeEEEec
Q psy7191          71 RTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---------DPRLVPVYG  140 (413)
Q Consensus        71 vll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---------~~rv~~i~~  140 (413)
                      ++++++++.+.. ..++..++|..||.|+++..+++. +..+|+|+|.++.+++.|+++...         ..++.++++
T Consensus        19 ~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   97 (313)
T 3bgv_A           19 VLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA   97 (313)
T ss_dssp             HHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred             HHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence            566677766631 126789999999999999999874 567999999999999999876532         127888998


Q ss_pred             CCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191         141 KFSDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       141 nFs~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      +...+.- ...+....+.+|.|+...
T Consensus        98 D~~~~~~-~~~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A           98 DSSKELL-IDKFRDPQMCFDICSCQF  122 (313)
T ss_dssp             CTTTSCS-TTTCSSTTCCEEEEEEET
T ss_pred             cccccch-hhhcccCCCCEEEEEEec
Confidence            8876520 000100123689988755

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=97.37  E-value=0.00028  Score=69.93  Aligned_cols=85  Identities=20%  Similarity=0.198  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--------C--CCeEEEecCCCChHHHHHh
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--------D--PRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--------~--~rv~~i~~nFs~l~~~L~~  151 (413)
                      +.++..++|..+|.|..+..+++.+ |.++|+|+|+++.+++.|+++++.        +  +++.++++++.++..... 
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS-
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc-
Confidence            4578899999999999999999987 778999999999999999886531        2  489999999987643211 


Q ss_pred             cCCCCCCccEEEEcCCC
Q psy7191         152 MNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       152 ~~~~~~~VDGILfDLGv  168 (413)
                      ..++.+.+|.|+.+..+
T Consensus       160 ~~~~~~~fD~V~~~~~l  176 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVC  176 (383)
T ss_dssp             CCCCTTCEEEEEEESCG
T ss_pred             CCCCCCCEEEEEEccch
Confidence            13334579999977544

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.36  E-value=0.00059  Score=65.71  Aligned_cols=76  Identities=25%  Similarity=0.297  Sum_probs=60.1

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ++..++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..      .+++++++++..   +++...   .+.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~---~~l~~~---~~~  163 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA---EYVRKF---KNE  163 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH---HHGGGC---SSC
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHH---HHHhhC---CCC
Confidence            34789999999999999999876778999999999999999886531      258999988653   344332   246


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|+.|+
T Consensus       164 fD~Ii~d~  171 (296)
T 1inl_A          164 FDVIIIDS  171 (296)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEcC
Confidence            99999874

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.34  E-value=0.00071  Score=64.47  Aligned_cols=75  Identities=23%  Similarity=0.181  Sum_probs=60.3

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc----CC--CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA----ND--PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~----~~--~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      +..++|+.+|.|+-+..+++..|..+|+++|+|+.+++.|++.+.    .+  +|+++++++..   +++...   .+.+
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~---~~l~~~---~~~f  149 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF---MHIAKS---ENQY  149 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH---HHHHTC---CSCE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHH---HHHhhC---CCCe
Confidence            578999999999999999987667899999999999999988652    22  49999998864   345432   2479


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.|+.|+
T Consensus       150 D~Ii~d~  156 (275)
T 1iy9_A          150 DVIMVDS  156 (275)
T ss_dssp             EEEEESC
T ss_pred             eEEEECC
Confidence            9999875

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.34  E-value=0.00017  Score=64.96  Aligned_cols=70  Identities=13%  Similarity=0.162  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH------HHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN------ILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~------~L~~~~~~~  156 (413)
                      .+++..+||+.+|.||-|..+++.  .++|+|+|+++.+         ..++++++++++.+...      ++.+.+.  
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~--   89 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDRALREEGI--   89 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHHHHHHHTC--
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHHHhhcccC--
Confidence            467899999999999999999887  7899999999741         13479999999877432      2221111  


Q ss_pred             CCccEEEEc
Q psy7191         157 NSIDGIIMD  165 (413)
Q Consensus       157 ~~VDGILfD  165 (413)
                      +.+|.|+.|
T Consensus        90 ~~~D~Vlsd   98 (191)
T 3dou_A           90 EKVDDVVSD   98 (191)
T ss_dssp             SSEEEEEEC
T ss_pred             CcceEEecC
Confidence            269999965

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=97.34  E-value=0.00026  Score=69.12  Aligned_cols=84  Identities=14%  Similarity=0.098  Sum_probs=64.4

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhc
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~  152 (413)
                      ..+++.|. +.+++.++|..+|.|..+..+++..|.++|+|+|.++.+++.|+++..... .+.++.+++...   .   
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~---~---  258 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE---V---  258 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT---C---
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc---c---
Confidence            44556664 556789999999999999999999888899999999999999988765433 566677776432   1   


Q ss_pred             CCCCCCccEEEEcCC
Q psy7191         153 NNNFNSIDGIIMDVG  167 (413)
Q Consensus       153 ~~~~~~VDGILfDLG  167 (413)
                         .+.+|.|+.+.-
T Consensus       259 ---~~~fD~Iv~~~~  270 (343)
T 2pjd_A          259 ---KGRFDMIISNPP  270 (343)
T ss_dssp             ---CSCEEEEEECCC
T ss_pred             ---cCCeeEEEECCC
Confidence               246999996543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.33  E-value=0.00058  Score=67.55  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCCh
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDL  145 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l  145 (413)
                      .|.+.+++.+. +. ++.++|+.+|.|+.|..+...  ..+|+|+|+++.|++.|+++.+.  .+++++++++..++
T Consensus       201 ~l~~~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~  273 (369)
T 3bt7_A          201 QMLEWALDVTK-GS-KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF  273 (369)
T ss_dssp             HHHHHHHHHTT-TC-CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH
T ss_pred             HHHHHHHHHhh-cC-CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence            46667777774 33 578999999999999987764  35899999999999999887643  24899999887554

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.32  E-value=0.00034  Score=68.39  Aligned_cols=76  Identities=24%  Similarity=0.251  Sum_probs=61.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ++..++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..      .+++++++++..   +++...   .+.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~---~~l~~~---~~~  189 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS---KFLENV---TNT  189 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH---HHHHHC---CSC
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHH---HHHhhc---CCC
Confidence            45789999999999999999876778999999999999999987654      248999988753   344332   246


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|+.|.
T Consensus       190 fDvIi~d~  197 (321)
T 2pt6_A          190 YDVIIVDS  197 (321)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEECC
Confidence            99999874

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=97.32  E-value=0.00038  Score=60.92  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=54.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .+++.++|..+|.|..+..+++..   +|+|+|+++.+++.       .+++.++++++.+.   +     ..+.+|.|+
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~---~-----~~~~fD~i~   83 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------HRGGNLVRADLLCS---I-----NQESVDVVV   83 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------CSSSCEEECSTTTT---B-----CGGGCSEEE
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------ccCCeEEECChhhh---c-----ccCCCCEEE
Confidence            467799999999999999988775   99999999999987       24788899987652   1     124699999


Q ss_pred             EcCCC
Q psy7191         164 MDVGI  168 (413)
Q Consensus       164 fDLGv  168 (413)
                      .|..+
T Consensus        84 ~n~~~   88 (170)
T 3q87_B           84 FNPPY   88 (170)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            87665

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.31  E-value=0.00048  Score=65.28  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             cCCccccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191          65 YNKKYPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS  143 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs  143 (413)
                      |+.+||   +++++.|.. ...++.++|+-||+|..+..+.+..  .+|+|+|.++.+++.|++    .+++.++++++.
T Consensus        21 ~Rp~yp---~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e   91 (257)
T 4hg2_A           21 FRPRYP---RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR----HPRVTYAVAPAE   91 (257)
T ss_dssp             CCCCCC---HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC----CTTEEEEECCTT
T ss_pred             HCCCcH---HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh----cCCceeehhhhh
Confidence            456666   444444421 2245789999999999999988764  589999999999987643    358999999987


Q ss_pred             ChHHHHHhcCCCCCCccEEEEc
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      +++       ++.+.+|.|+.-
T Consensus        92 ~~~-------~~~~sfD~v~~~  106 (257)
T 4hg2_A           92 DTG-------LPPASVDVAIAA  106 (257)
T ss_dssp             CCC-------CCSSCEEEEEEC
T ss_pred             hhc-------ccCCcccEEEEe
Confidence            652       344689999973

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.31  E-value=0.00038  Score=67.23  Aligned_cols=83  Identities=17%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             HhHHhccCCCCC-CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHH
Q psy7191          74 QTSASGLNDSSD-DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        74 ~evi~~L~~~~~-~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L  149 (413)
                      .++++.+. ..+ +..++|.-+|.|..+..+++.+|+.+++++|. |.+++.++++....   ++++++.++|.+....+
T Consensus       168 ~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          168 VDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred             HHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence            46777775 556 78999999999999999999999999999999 88999988765432   28999999988754211


Q ss_pred             HhcCCCCCCccEEEE
Q psy7191         150 KNMNNNFNSIDGIIM  164 (413)
Q Consensus       150 ~~~~~~~~~VDGILf  164 (413)
                            ...+|.|++
T Consensus       246 ------~~~~D~v~~  254 (352)
T 3mcz_A          246 ------GGAADVVML  254 (352)
T ss_dssp             ------TCCEEEEEE
T ss_pred             ------CCCccEEEE
Confidence                  235899886

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.30  E-value=0.00047  Score=60.70  Aligned_cols=70  Identities=19%  Similarity=0.204  Sum_probs=57.1

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      .++.++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++   ++++.++++++.+++  +     ..+.+|.|+.
T Consensus        41 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~---~~~~~~~~~d~~~~~--~-----~~~~fD~v~~  108 (203)
T 3h2b_A           41 VDGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT---HPSVTFHHGTITDLS--D-----SPKRWAGLLA  108 (203)
T ss_dssp             CCSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH---CTTSEEECCCGGGGG--G-----SCCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh---CCCCeEEeCcccccc--c-----CCCCeEEEEe
Confidence            4789999999999999999887  45899999999999999876   357889999887653  1     1247999997


Q ss_pred             cC
Q psy7191         165 DV  166 (413)
Q Consensus       165 DL  166 (413)
                      ..
T Consensus       109 ~~  110 (203)
T 3h2b_A          109 WY  110 (203)
T ss_dssp             ES
T ss_pred             hh
Confidence            54

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=97.29  E-value=0.00044  Score=62.14  Aligned_cols=84  Identities=19%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHH
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPN  147 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~  147 (413)
                      +..+.+.++..+.   ++..++|..+|.|..+..+++.   .+|+|+|.++.+++.|+++.... .++.++++++.++. 
T Consensus        20 ~~~~~~~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-   92 (243)
T 3d2l_A           20 YPEWVAWVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-   92 (243)
T ss_dssp             HHHHHHHHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-
T ss_pred             HHHHHHHHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-
Confidence            3445555566553   5689999999999999988876   79999999999999998876533 37888888875532 


Q ss_pred             HHHhcCCCCCCccEEEEcC
Q psy7191         148 ILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDL  166 (413)
                            .+ +.+|.|+...
T Consensus        93 ------~~-~~fD~v~~~~  104 (243)
T 3d2l_A           93 ------LP-EPVDAITILC  104 (243)
T ss_dssp             ------CS-SCEEEEEECT
T ss_pred             ------CC-CCcCEEEEeC
Confidence                  11 4689998643

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.28  E-value=0.00048  Score=69.51  Aligned_cols=77  Identities=12%  Similarity=0.129  Sum_probs=56.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++|..++|+++|.|+.|..++..  .+.|+|+|+++.|++.|+++.+..+ ...+.   ..++.+++...  . +.+|.|
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~---~~D~~~~l~~~--~-~~fD~I  284 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIR---HGEALPTLRGL--E-GPFHHV  284 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEE---ESCHHHHHHTC--C-CCEEEE
T ss_pred             cCCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEE---EccHHHHHHHh--c-CCCCEE
Confidence            46899999999999999999886  3459999999999999988754321 22333   34555666553  1 249999


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      ++|..+
T Consensus       285 i~dpP~  290 (393)
T 4dmg_A          285 LLDPPT  290 (393)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            987554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.28  E-value=0.00028  Score=65.86  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=65.4

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCC
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKF  142 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nF  142 (413)
                      +..+.+.+++.+. ..++..++|..||.|.++..+++.  ..+|+|+|+++.+++.|+++...      +.++.+..+++
T Consensus        42 ~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~  118 (293)
T 3thr_A           42 TAEYKAWLLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW  118 (293)
T ss_dssp             CHHHHHHHHHHHH-HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG
T ss_pred             HHHHHHHHHHHhc-ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh
Confidence            3344455555554 567789999999999999999887  34899999999999999775411      13788899988


Q ss_pred             CChHHHHHhcCCCCCCccEEEE
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILf  164 (413)
                      .++..-+    ...+.+|.|+.
T Consensus       119 ~~~~~~~----~~~~~fD~V~~  136 (293)
T 3thr_A          119 LTLDKDV----PAGDGFDAVIC  136 (293)
T ss_dssp             GGHHHHS----CCTTCEEEEEE
T ss_pred             hhCcccc----ccCCCeEEEEE
Confidence            8775332    12357999985

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.26  E-value=0.00047  Score=65.88  Aligned_cols=76  Identities=24%  Similarity=0.251  Sum_probs=61.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ++..++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..      .+++++++++..   +++...   .+.
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~---~~l~~~---~~~  151 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDAS---KFLENV---TNT  151 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHH---HHHHHC---CSC
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChH---HHHHhC---CCC
Confidence            45789999999999999999876778999999999999999987653      248999988654   344432   247


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|+.|.
T Consensus       152 fD~Ii~d~  159 (283)
T 2i7c_A          152 YDVIIVDS  159 (283)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEcC
Confidence            99999885

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.25  E-value=0.0015  Score=62.28  Aligned_cols=74  Identities=24%  Similarity=0.311  Sum_probs=59.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------------CCCCeEEEecCCCChHHHHHhc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------------NDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------------~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ++..++|..+|.|+-+..+++. |..+|+++|+|+.+++.|++.+.            ..++++++.++.   .+++.. 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~---~~~l~~-  149 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG---FEFIKN-  149 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH---HHHHHH-
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECch---HHHhcc-
Confidence            4578999999999999999988 87899999999999999998761            124899998764   344543 


Q ss_pred             CCCCCCccEEEEcC
Q psy7191         153 NNNFNSIDGIIMDV  166 (413)
Q Consensus       153 ~~~~~~VDGILfDL  166 (413)
                      .   +.+|.|+.|+
T Consensus       150 ~---~~fD~Ii~d~  160 (281)
T 1mjf_A          150 N---RGFDVIIADS  160 (281)
T ss_dssp             C---CCEEEEEEEC
T ss_pred             c---CCeeEEEECC
Confidence            1   3699999875

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.23  E-value=0.00054  Score=67.37  Aligned_cols=80  Identities=11%  Similarity=0.028  Sum_probs=59.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC--CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP--RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~--rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++..++|+.+|.|+.+..++..  ..+|+|+|.++.|++.|+++.+.  ..  ++.+++++..++...+...+   ..+
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~---~~f  226 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG---STY  226 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT---CCB
T ss_pred             CCCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcC---CCc
Confidence            35679999999999999999875  34999999999999999886542  22  49999887654332221111   369


Q ss_pred             cEEEEcCCC
Q psy7191         160 DGIIMDVGI  168 (413)
Q Consensus       160 DGILfDLGv  168 (413)
                      |.|++|..+
T Consensus       227 D~Ii~dPP~  235 (332)
T 2igt_A          227 DIILTDPPK  235 (332)
T ss_dssp             SEEEECCCS
T ss_pred             eEEEECCcc
Confidence            999988653

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.22  E-value=0.0011  Score=64.22  Aligned_cols=76  Identities=18%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      ++..++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..      .+++++++++.   .+++...   .+.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da---~~~l~~~---~~~  168 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG---FEFMKQN---QDA  168 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHHHTC---SSC
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH---HHHHhhC---CCC
Confidence            45789999999999999999877778999999999999999886532      35899998764   3445432   247


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|+.|+
T Consensus       169 fD~Ii~d~  176 (304)
T 2o07_A          169 FDVIITDS  176 (304)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEECC
Confidence            99999875

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.22  E-value=0.00074  Score=67.23  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-C-CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-P-RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~-rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++..++|+.+|.|+-|..++... ..+|+|+|+++.|++.|+++.+  .. . ++++++++..++...+...+   ..+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~---~~f  294 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRG---EKF  294 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTT---CCE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcC---CCC
Confidence            367899999999999999998763 4689999999999999988654  33 4 78999988655432222112   369


Q ss_pred             cEEEEcCC
Q psy7191         160 DGIIMDVG  167 (413)
Q Consensus       160 DGILfDLG  167 (413)
                      |.|++|..
T Consensus       295 D~Ii~dpP  302 (396)
T 3c0k_A          295 DVIVMDPP  302 (396)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99997654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.22  E-value=0.00043  Score=69.49  Aligned_cols=88  Identities=15%  Similarity=-0.018  Sum_probs=64.4

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC--------------------------------------CCEEE
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG--------------------------------------NVKVI  113 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p--------------------------------------~g~Vi  113 (413)
                      |...++.... ..++..++|..||.|+-....+....                                      ..+|+
T Consensus       183 lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~  261 (385)
T 3ldu_A          183 LAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIY  261 (385)
T ss_dssp             HHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEE
T ss_pred             HHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEE
Confidence            3333344443 67789999999999988777665432                                      25799


Q ss_pred             EEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         114 CLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       114 a~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      |+|+|+.|++.|+++++.  .. ++++.++++.++..        ...+|.|+.|-.|
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPy  311 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPY  311 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCC
Confidence            999999999999887543  33 79999999876521        2368999977666

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.21  E-value=0.00033  Score=70.38  Aligned_cols=79  Identities=13%  Similarity=0.008  Sum_probs=61.3

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---------------C--CeEEEecCCCChHH
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---------------P--RLVPVYGKFSDLPN  147 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---------------~--rv~~i~~nFs~l~~  147 (413)
                      ++..++|+.+|.|+-+..+++..+..+|+|+|+|+.|++.++++++..               +  ++++++++...   
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~---  123 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR---  123 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH---
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHH---
Confidence            467999999999999999999888789999999999999998865432               2  47888776543   


Q ss_pred             HHHhcCCCCCCccEEEEcCCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      ++...   ...+|.|++|--+|
T Consensus       124 ~~~~~---~~~fD~I~lDP~~~  142 (378)
T 2dul_A          124 LMAER---HRYFHFIDLDPFGS  142 (378)
T ss_dssp             HHHHS---TTCEEEEEECCSSC
T ss_pred             HHHhc---cCCCCEEEeCCCCC
Confidence            34332   13699999886444

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.20  E-value=0.0011  Score=64.59  Aligned_cols=109  Identities=15%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             HHhhcCCcccchhHHHHHHHHHhH---Hhhh-hhccCCccccchHhHHhccCCCC-CCCEEEEEecCC--chhHHHHHHh
Q psy7191          34 AQFVSNNKFTIEEEETLKKNLASL---KRLS-EDIYNKKYPRTFQTSASGLNDSS-DDVTMIDMTYGD--GNHTRLILEN  106 (413)
Q Consensus        34 ~~~~~~~~~~~~~~e~~~~~~~sl---~~~~-~n~y~~H~pvll~evi~~L~~~~-~~~i~VDaTlG~--GGHS~aILe~  106 (413)
                      --+++.+++.++.+ .+.+...-.   ..++ .|-      ..+..++..|. .. ....++|.-||.  ||.+..++..
T Consensus        30 ~~LgGk~n~~~Dr~-~~~~~~~~~P~~~~~a~~nr------~fl~rav~~l~-~~~g~~q~LDLGcG~pT~~~~~~la~~  101 (277)
T 3giw_A           30 YIIGGKDYYPADKE-AGDAMSREWPALPVHMRANR------DWMNRAVAHLA-KEAGIRQFLDIGTGIPTSPNLHEIAQS  101 (277)
T ss_dssp             HHTTCSCCCHHHHH-HHHHHHHHCTTHHHHHHHHH------HHHHHHHHHHH-HTSCCCEEEEESCCSCCSSCHHHHHHH
T ss_pred             eecCCccCCHHHHH-HHHHHHHhCCCHHHHHHHHH------HHHHHHHHHhc-cccCCCEEEEeCCCCCcccHHHHHHHH
Confidence            34566777777766 555544322   1111 111      22455666663 22 336899999997  7889998886


Q ss_pred             c-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHH
Q psy7191         107 I-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILK  150 (413)
Q Consensus       107 ~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~  150 (413)
                      . |+++|+++|.||.+++.|++++...+  ++.++++++.+++.+|.
T Consensus       102 ~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~  148 (277)
T 3giw_A          102 VAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILD  148 (277)
T ss_dssp             HCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHT
T ss_pred             HCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhc
Confidence            5 89999999999999999999886533  79999999999876654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.20  E-value=0.0011  Score=66.57  Aligned_cols=76  Identities=12%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+++.++|..||.|..+..+++.  +.+|+|+|+++.+++.|+++.+... .+.+++++..+...       ..+.+|.|
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~-------~~~~fD~I  302 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALT-------EEARFDII  302 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSC-------TTCCEEEE
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccc-------cCCCeEEE
Confidence            36789999999999999999987  4699999999999999998765443 68889988765421       12479999


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      +.|..+
T Consensus       303 i~npp~  308 (381)
T 3dmg_A          303 VTNPPF  308 (381)
T ss_dssp             EECCCC
T ss_pred             EECCch
Confidence            976554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.19  E-value=0.0014  Score=64.23  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHh
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~  151 (413)
                      +++..+. ..+...++|.-+|.|..+..+++.+|+.+++++|. |.+++.|+++.+..   ++++++.++|.+..     
T Consensus       170 ~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----  242 (363)
T 3dp7_A          170 KALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRD-----  242 (363)
T ss_dssp             HHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSS-----
T ss_pred             HHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccC-----
Confidence            3444443 24568999999999999999999999999999999 99999999876643   28999999986531     


Q ss_pred             cCCCCCCccEEEEc
Q psy7191         152 MNNNFNSIDGIIMD  165 (413)
Q Consensus       152 ~~~~~~~VDGILfD  165 (413)
                      ..++ +.+|.|++-
T Consensus       243 ~~~p-~~~D~v~~~  255 (363)
T 3dp7_A          243 VPFP-TGFDAVWMS  255 (363)
T ss_dssp             CCCC-CCCSEEEEE
T ss_pred             CCCC-CCcCEEEEe
Confidence            0122 468998863

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.19  E-value=0.0015  Score=63.82  Aligned_cols=76  Identities=29%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      +...++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..      .+|+++++++..   +++...   .+.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~---~~l~~~---~~~  181 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF---EFLKNH---KNE  181 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH---HHHHHC---TTC
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHH---HHHHhc---CCC
Confidence            45789999999999999999877778999999999999999987653      248999887653   344432   246


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|+.|+
T Consensus       182 fD~Ii~d~  189 (314)
T 2b2c_A          182 FDVIITDS  189 (314)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEEcC
Confidence            99999875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.18  E-value=0.001  Score=63.33  Aligned_cols=82  Identities=18%  Similarity=0.200  Sum_probs=65.1

Q ss_pred             hHhHHhccCCC--CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHH
Q psy7191          73 FQTSASGLNDS--SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPN  147 (413)
Q Consensus        73 l~evi~~L~~~--~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~  147 (413)
                      ..++++.+. .  .++..++|..+|.|..+..+++.+|+.+++|+|++ .+++.|+++...  .. +++++.+++.+.+ 
T Consensus       152 ~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-  228 (335)
T 2r3s_A          152 AQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-  228 (335)
T ss_dssp             HHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-
T ss_pred             HHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-
Confidence            346666664 5  67889999999999999999999999999999999 999999886543  22 7999999986531 


Q ss_pred             HHHhcCCCCCCccEEEE
Q psy7191         148 ILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILf  164 (413)
                            ++ ..+|.|++
T Consensus       229 ------~~-~~~D~v~~  238 (335)
T 2r3s_A          229 ------YG-NDYDLVLL  238 (335)
T ss_dssp             ------CC-SCEEEEEE
T ss_pred             ------CC-CCCcEEEE
Confidence                  22 24888886

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.17  E-value=0.00049  Score=66.84  Aligned_cols=76  Identities=26%  Similarity=0.312  Sum_probs=60.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-------CCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-------DPRLVPVYGKFSDLPNILKNMNNNFN  157 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-------~~rv~~i~~nFs~l~~~L~~~~~~~~  157 (413)
                      ++..++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..       .++++++.++..   +++...   .+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~---~~l~~~---~~  150 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR---AYLERT---EE  150 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH---HHHHHC---CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHH---HHHHhc---CC
Confidence            34789999999999999999876778999999999999999886532       248999988754   344432   24


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|+.|+
T Consensus       151 ~fD~Ii~d~  159 (314)
T 1uir_A          151 RYDVVIIDL  159 (314)
T ss_dssp             CEEEEEEEC
T ss_pred             CccEEEECC
Confidence            699999985

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=97.17  E-value=0.00059  Score=64.34  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=63.7

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-----CCeEEEecCCCCh
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-----PRLVPVYGKFSDL  145 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-----~rv~~i~~nFs~l  145 (413)
                      .....+++.+. + +++.++|..||.|..+..+++.  ..+|+|+|+++.+++.|+++....     .++.++++++.++
T Consensus        70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred             HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence            34556666664 3 3459999999999999999887  468999999999999999876543     4799999998875


Q ss_pred             HHHHHhcCCCCCCccEEEE
Q psy7191         146 PNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILf  164 (413)
                      +.        .+.+|.|++
T Consensus       146 ~~--------~~~fD~v~~  156 (299)
T 3g2m_A          146 AL--------DKRFGTVVI  156 (299)
T ss_dssp             CC--------SCCEEEEEE
T ss_pred             Cc--------CCCcCEEEE
Confidence            31        246888874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.16  E-value=0.00059  Score=65.87  Aligned_cols=78  Identities=23%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------CCCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------NDPRLVPVYGKFSDLPNILKNMNNNFN  157 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------~~~rv~~i~~nFs~l~~~L~~~~~~~~  157 (413)
                      .++..++|..+|.|+-+..+++..+..+|+++|+|+.+++.|++.+.      ..+++.++.++...   ++...  ..+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~---~~~~~--~~~  168 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLA---FVRQT--PDN  168 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHH---HHHSS--CTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHH---HHHhc--cCC
Confidence            34578999999999999999987677899999999999999988652      12489999887643   34321  124


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|+.|.
T Consensus       169 ~fDvIi~d~  177 (304)
T 3bwc_A          169 TYDVVIIDT  177 (304)
T ss_dssp             CEEEEEEEC
T ss_pred             ceeEEEECC
Confidence            799999864

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.16  E-value=0.0016  Score=63.14  Aligned_cols=85  Identities=15%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~  146 (413)
                      ......+++.+. ..++..++|..+|.|..+..+++.+|+.+++++|+ +.+++.|+++...  .. +++++.+++.+- 
T Consensus       168 ~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  244 (374)
T 1qzz_A          168 DLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-  244 (374)
T ss_dssp             TTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred             HhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc-
Confidence            345567777775 67788999999999999999999999999999999 9999999886543  22 899999997541 


Q ss_pred             HHHHhcCCCCCCccEEEEc
Q psy7191         147 NILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfD  165 (413)
                             ++ ..+|.|++.
T Consensus       245 -------~~-~~~D~v~~~  255 (374)
T 1qzz_A          245 -------LP-VTADVVLLS  255 (374)
T ss_dssp             -------CS-CCEEEEEEE
T ss_pred             -------CC-CCCCEEEEe
Confidence                   11 237888754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=97.14  E-value=0.0017  Score=63.51  Aligned_cols=82  Identities=17%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHh
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~  151 (413)
                      .+...+. ..++..++|..+|.|..+..+++. +..+|+|+|.++ +++.|+++.+.  . +++++++++..++.     
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-----  126 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH-----  126 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-----
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-----
Confidence            3334443 567889999999999998888876 556999999997 88888876543  3 48999999987652     


Q ss_pred             cCCCCCCccEEEEcC
Q psy7191         152 MNNNFNSIDGIIMDV  166 (413)
Q Consensus       152 ~~~~~~~VDGILfDL  166 (413)
                        ++.+++|.|+.+.
T Consensus       127 --~~~~~~D~Ivs~~  139 (340)
T 2fyt_A          127 --LPVEKVDVIISEW  139 (340)
T ss_dssp             --CSCSCEEEEEECC
T ss_pred             --CCCCcEEEEEEcC
Confidence              2235799999765

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=97.13  E-value=0.00076  Score=63.56  Aligned_cols=59  Identities=8%  Similarity=0.015  Sum_probs=50.8

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKF  142 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nF  142 (413)
                      .++..++|..+|.|-=+..++...|.++|+|+|+++.|++.|+++.+.+  . ++++++++.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~   75 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG   75 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECch
Confidence            4778999999999988888888778889999999999999999876543  2 799998874

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.12  E-value=0.00029  Score=69.42  Aligned_cols=86  Identities=12%  Similarity=0.104  Sum_probs=66.8

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI  148 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~  148 (413)
                      +.+.+.+++.+. +.+++.++|.++|.|+-+.+++++. +...|+|+|+|+.|++.|       .++.++++++.+..  
T Consensus        25 ~~l~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~~~~D~~~~~--   94 (421)
T 2ih2_A           25 PEVVDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--   94 (421)
T ss_dssp             HHHHHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC--
T ss_pred             HHHHHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcEEeCChhhcC--
Confidence            345566666665 5567799999999999999999987 678999999999998765       46888998875431  


Q ss_pred             HHhcCCCCCCccEEEEcCCCCcc
Q psy7191         149 LKNMNNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGvSS~  171 (413)
                            ..+.+|.|+.|-.|...
T Consensus        95 ------~~~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           95 ------PGEAFDLILGNPPYGIV  111 (421)
T ss_dssp             ------CSSCEEEEEECCCCCCB
T ss_pred             ------ccCCCCEEEECcCccCc
Confidence                  12479999999877543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.10  E-value=0.00068  Score=67.03  Aligned_cols=75  Identities=16%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      ..++|.-+|.|+-+..+++.+|+.+|+++|+|+.+++.|++.+...  +|+++++++..   +++...  ..+.+|.|+.
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~---~~l~~~--~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDAR---MVAESF--TPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHH---HHHHTC--CTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHH---HHHhhc--cCCCCCEEEE
Confidence            3899999999999999999889999999999999999999876532  48999987754   455542  1247999998


Q ss_pred             cC
Q psy7191         165 DV  166 (413)
Q Consensus       165 DL  166 (413)
                      |+
T Consensus       166 D~  167 (317)
T 3gjy_A          166 DV  167 (317)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.09  E-value=0.00057  Score=67.46  Aligned_cols=78  Identities=24%  Similarity=0.300  Sum_probs=61.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFN  157 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~  157 (413)
                      .+...++|..+|.|+-+..+++..|..+|+++|+|+.+++.|++.+..      .+++++++++..   +++....  .+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~---~~l~~~~--~~  193 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV---AFLKNAA--EG  193 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH---HHHHTSC--TT
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHH---HHHHhcc--CC
Confidence            345789999999999999999876778999999999999999886542      248999988753   3454321  24


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|+.|.
T Consensus       194 ~fDlIi~d~  202 (334)
T 1xj5_A          194 SYDAVIVDS  202 (334)
T ss_dssp             CEEEEEECC
T ss_pred             CccEEEECC
Confidence            699999765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=97.08  E-value=0.00092  Score=63.30  Aligned_cols=67  Identities=9%  Similarity=0.014  Sum_probs=54.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKF  142 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nF  142 (413)
                      |+.+.+.+   .++..++|+.+|.|-=+.+++...|..+|+|+|+|+.|++.|+++.+.+   +++++++++.
T Consensus        12 L~~i~~~v---~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~   81 (230)
T 3lec_A           12 LQKVANYV---PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG   81 (230)
T ss_dssp             HHHHHTTS---CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred             HHHHHHhC---CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            44444444   4678999999999988888887777789999999999999999876543   2799999874

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.07  E-value=0.00081  Score=67.78  Aligned_cols=86  Identities=15%  Similarity=-0.005  Sum_probs=62.1

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC--------------------------------------CEEEEE
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN--------------------------------------VKVICL  115 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~--------------------------------------g~Via~  115 (413)
                      ..++.... ..++..++|..||.|+-....+....+                                      .+|+|+
T Consensus       191 a~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~Gv  269 (393)
T 3k0b_A          191 AALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGG  269 (393)
T ss_dssp             HHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred             HHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEE
Confidence            33344443 677889999999999876555543322                                      579999


Q ss_pred             eCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         116 DRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       116 DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      |+|+.|++.|+++++.  .. +++++++++.++..        ...+|.|+.|..|
T Consensus       270 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~--------~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          270 DIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQT--------EDEYGVVVANPPY  317 (393)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC--------CCCSCEEEECCCC
T ss_pred             ECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCC--------CCCCCEEEECCCC
Confidence            9999999999987653  23 69999998866421        2368999977555

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.07  E-value=0.00081  Score=67.15  Aligned_cols=81  Identities=14%  Similarity=0.009  Sum_probs=59.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC--CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP--RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~--rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++..++|+.+|.|+.|..++.. ...+|+|+|+++.|++.|+++.+.  ..  ++++++++..+.-..+...+   ..+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~---~~f  286 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHH---LTY  286 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTT---CCE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhC---CCc
Confidence            46789999999999999998875 234899999999999999886542  33  79999987544222222112   369


Q ss_pred             cEEEEcCCC
Q psy7191         160 DGIIMDVGI  168 (413)
Q Consensus       160 DGILfDLGv  168 (413)
                      |.|++|-.+
T Consensus       287 D~Ii~DPP~  295 (385)
T 2b78_A          287 DIIIIDPPS  295 (385)
T ss_dssp             EEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999976443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.06  E-value=0.00096  Score=59.06  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=58.0

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCC-EEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNV-KVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g-~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      .+.+..+. . ++..++|..+|.|..+..+     .. +|+|+|.++.+++.++++.   +++.++++++.+++      
T Consensus        27 ~~~l~~~~-~-~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~------   90 (211)
T 2gs9_A           27 ERALKGLL-P-PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALP------   90 (211)
T ss_dssp             HHHHHTTC-C-CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCC------
T ss_pred             HHHHHHhc-C-CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCC------
Confidence            44555554 3 7889999999999888776     34 8999999999999998875   56888888887652      


Q ss_pred             CCCCCCccEEEEc
Q psy7191         153 NNNFNSIDGIIMD  165 (413)
Q Consensus       153 ~~~~~~VDGILfD  165 (413)
                       ...+.+|.|+..
T Consensus        91 -~~~~~fD~v~~~  102 (211)
T 2gs9_A           91 -FPGESFDVVLLF  102 (211)
T ss_dssp             -SCSSCEEEEEEE
T ss_pred             -CCCCcEEEEEEc
Confidence             223579999965

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.06  E-value=0.00095  Score=67.22  Aligned_cols=86  Identities=16%  Similarity=0.004  Sum_probs=62.6

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC--------------------------------------CEEEEE
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN--------------------------------------VKVICL  115 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~--------------------------------------g~Via~  115 (413)
                      ..++.... .+++..++|..||.|+-....+....+                                      .+|+|+
T Consensus       184 aall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~Gv  262 (384)
T 3ldg_A          184 AAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGF  262 (384)
T ss_dssp             HHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEE
T ss_pred             HHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEE
Confidence            33333333 678899999999999776555543322                                      579999


Q ss_pred             eCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         116 DRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       116 DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      |+|+.|++.|+++++..  . +++++++++.++..        ...+|.|+.|-.|
T Consensus       263 Did~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~--------~~~fD~Iv~NPPY  310 (384)
T 3ldg_A          263 DFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKT--------NKINGVLISNPPY  310 (384)
T ss_dssp             ESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCC--------CCCSCEEEECCCC
T ss_pred             ECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCc--------cCCcCEEEECCch
Confidence            99999999999876533  3 79999999876521        1368999987666

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.06  E-value=0.001  Score=64.71  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=65.8

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~  148 (413)
                      ...++++.+. ..++..++|..+|.|..+..+++.+|+.+++++|. +.+++.|+++++.  .+ +++++.+++.+..  
T Consensus       178 ~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--  253 (359)
T 1x19_A          178 AIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--  253 (359)
T ss_dssp             HHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC--
T ss_pred             hHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC--
Confidence            3466777775 67788999999999999999999999999999999 9999999886543  23 7999999987541  


Q ss_pred             HHhcCCCCCCccEEEE
Q psy7191         149 LKNMNNNFNSIDGIIM  164 (413)
Q Consensus       149 L~~~~~~~~~VDGILf  164 (413)
                           ++  ..|.|++
T Consensus       254 -----~~--~~D~v~~  262 (359)
T 1x19_A          254 -----YP--EADAVLF  262 (359)
T ss_dssp             -----CC--CCSEEEE
T ss_pred             -----CC--CCCEEEE
Confidence                 11  2388886

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=97.01  E-value=0.0018  Score=63.60  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      ..++..++|..+|.|..+..+++. +..+|+|+|.++ +++.|+++.+.  .. ++++++++..++.       ++.+++
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~f  134 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEKV  134 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSCE
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHcc-------CCCCce
Confidence            346889999999999998888877 667999999995 88888876543  23 6999999988762       223579


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.|+.+.
T Consensus       135 D~Iis~~  141 (349)
T 3q7e_A          135 DIIISEW  141 (349)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcc
Confidence            9999874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.01  E-value=0.00071  Score=61.53  Aligned_cols=88  Identities=14%  Similarity=0.143  Sum_probs=62.5

Q ss_pred             cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD  144 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~  144 (413)
                      |......+.+.....+....++..++|..||.|..+..+.+.  +.+|+|+|.++.+++.++++      +.++.++.  
T Consensus        21 ~~~~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~------~~~~~~d~--   90 (240)
T 3dli_A           21 FRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK------FNVVKSDA--   90 (240)
T ss_dssp             HTCCHHHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT------SEEECSCH--
T ss_pred             hCCCHHHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh------cceeeccH--
Confidence            555555555555555543567889999999999999988876  45799999999999998765      55565554  


Q ss_pred             hHHHHHhcCCCCCCccEEEEc
Q psy7191         145 LPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfD  165 (413)
                       .+++..  +..+.+|.|+..
T Consensus        91 -~~~~~~--~~~~~fD~i~~~  108 (240)
T 3dli_A           91 -IEYLKS--LPDKYLDGVMIS  108 (240)
T ss_dssp             -HHHHHT--SCTTCBSEEEEE
T ss_pred             -HHHhhh--cCCCCeeEEEEC
Confidence             333322  223579999964

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=97.00  E-value=0.00082  Score=68.11  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             cCCcc-cc-chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-------------CCCEEEEEeCCHHHHHHHHhhh
Q psy7191          65 YNKKY-PR-TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-------------GNVKVICLDRDKESFEKAKTLA  129 (413)
Q Consensus        65 y~~H~-pv-ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-------------p~g~Via~DrD~~Al~~Ak~ll  129 (413)
                      .++|+ |. +.+-+++.+. +.++..++|.+||.||....+++.+             +...++|+|+|+.+++.|+.++
T Consensus       150 ~G~fyTP~~v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl  228 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  228 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence            44554 43 3344455554 7788899999999999999888764             3467999999999999998653


Q ss_pred             --cCCC--CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCcc
Q psy7191         130 --ANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       130 --~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~  171 (413)
                        ....  ++.++++++-..+       . ...+|.|+.|..++..
T Consensus       229 ~l~g~~~~~~~i~~gD~l~~~-------~-~~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          229 YLHGIGTDRSPIVCEDSLEKE-------P-STLVDVILANPPFGTR  266 (445)
T ss_dssp             HHTTCCSSCCSEEECCTTTSC-------C-SSCEEEEEECCCSSCC
T ss_pred             HHhCCCcCCCCEeeCCCCCCc-------c-cCCcCEEEECCCCCCc
Confidence              2332  5778888764431       1 1369999998877543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=96.99  E-value=0.0012  Score=63.13  Aligned_cols=59  Identities=10%  Similarity=0.067  Sum_probs=50.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKF  142 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nF  142 (413)
                      .++..++|+.+|.|-=+.+++...|..+|+|+|+|+.|++.|+++++..   +++.+++++-
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~   81 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG   81 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch
Confidence            4778999999999988888877767789999999999999999876543   2799999884

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=96.98  E-value=0.0017  Score=72.19  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhc--------CCCCeEEEecCCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAA--------NDPRLVPVYGKFS  143 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~--------~~~rv~~i~~nFs  143 (413)
                      ++.+++.|. ..++..++|..+|.|..+..+++.. |..+|+|+|+++.+++.|+++++        ..+++++++++..
T Consensus       710 le~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~  788 (950)
T 3htx_A          710 VEYALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL  788 (950)
T ss_dssp             HHHHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred             HHHHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence            555666665 5678999999999999999998887 55799999999999999987543        2247999999988


Q ss_pred             ChHHHHHhcCCCCCCccEEEE
Q psy7191         144 DLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +++.       ..+.+|.|+.
T Consensus       789 dLp~-------~d~sFDlVV~  802 (950)
T 3htx_A          789 EFDS-------RLHDVDIGTC  802 (950)
T ss_dssp             SCCT-------TSCSCCEEEE
T ss_pred             hCCc-------ccCCeeEEEE
Confidence            7532       1246899987

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=96.96  E-value=0.00028  Score=67.37  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=57.5

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh---cCCC-CeEEE--ecCCCChH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA---ANDP-RLVPV--YGKFSDLP  146 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll---~~~~-rv~~i--~~nFs~l~  146 (413)
                      +.+.++... ++++..++|+.||.||.|..+++.   ++|+|+|+++. +..+++..   +.++ ++.++  ++++.+++
T Consensus        63 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m-~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  137 (265)
T 2oxt_A           63 LAWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTL-GVGGHEVPRITESYGWNIVKFKSRVDIHTLP  137 (265)
T ss_dssp             HHHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECC-CCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred             HHHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchh-hhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence            556666533 678899999999999999998876   78999999983 22222111   0122 68888  88887642


Q ss_pred             HHHHhcCCCCCCccEEEEcCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLG  167 (413)
                               .+.+|.|+.|.+
T Consensus       138 ---------~~~fD~V~sd~~  149 (265)
T 2oxt_A          138 ---------VERTDVIMCDVG  149 (265)
T ss_dssp             ---------CCCCSEEEECCC
T ss_pred             ---------CCCCcEEEEeCc
Confidence                     246999998865

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.95  E-value=0.0031  Score=54.90  Aligned_cols=74  Identities=11%  Similarity=0.047  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCC---------CEEEEEeCCHHHHHHHHhhhcCCCCeEEE-ecCCCChHHH--HH
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGN---------VKVICLDRDKESFEKAKTLAANDPRLVPV-YGKFSDLPNI--LK  150 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~---------g~Via~DrD~~Al~~Ak~ll~~~~rv~~i-~~nFs~l~~~--L~  150 (413)
                      +.++..++|..+|.|+.+..+++..+.         ++|+|+|+++.+         ...++.++ ++++.+....  +.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~   90 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL   90 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence            457889999999999999999999764         899999999832         12468888 8888775421  11


Q ss_pred             hcCCCCCCccEEEEcC
Q psy7191         151 NMNNNFNSIDGIIMDV  166 (413)
Q Consensus       151 ~~~~~~~~VDGILfDL  166 (413)
                      .. .+...+|.|+.|.
T Consensus        91 ~~-~~~~~fD~V~~~~  105 (196)
T 2nyu_A           91 EV-LPGRRADVILSDM  105 (196)
T ss_dssp             HH-SGGGCEEEEEECC
T ss_pred             Hh-cCCCCCcEEEeCC
Confidence            10 1123699999764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=96.95  E-value=0.0043  Score=54.69  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=58.7

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      .+..++++.+.  .++..++|..+|.|..+..+++. + .+++|+|.++.+++.++++..     .++++++.+..    
T Consensus        20 ~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-----~~~~~d~~~~~----   86 (230)
T 3cc8_A           20 AVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-----HVVLGDIETMD----   86 (230)
T ss_dssp             CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-----EEEESCTTTCC----
T ss_pred             HHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-----cEEEcchhhcC----
Confidence            45566676663  67889999999999999999887 4 899999999999999987542     44566654321    


Q ss_pred             hcCCCCCCccEEEEc
Q psy7191         151 NMNNNFNSIDGIIMD  165 (413)
Q Consensus       151 ~~~~~~~~VDGILfD  165 (413)
                       ..+..+.+|.|++.
T Consensus        87 -~~~~~~~fD~v~~~  100 (230)
T 3cc8_A           87 -MPYEEEQFDCVIFG  100 (230)
T ss_dssp             -CCSCTTCEEEEEEE
T ss_pred             -CCCCCCccCEEEEC
Confidence             11222467888764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.92  E-value=0.0012  Score=64.46  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=60.1

Q ss_pred             hHhHHhccCCCC-CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEE-ecCCCChHHHHH
Q psy7191          73 FQTSASGLNDSS-DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPV-YGKFSDLPNILK  150 (413)
Q Consensus        73 l~evi~~L~~~~-~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i-~~nFs~l~~~L~  150 (413)
                      |.+.++.+. +. ++..++|..||+|+.|..+++. +.++|||+|+++.+++.+.+.   .+++..+ ..|+..+..  .
T Consensus        73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~---~~rv~~~~~~ni~~l~~--~  145 (291)
T 3hp7_A           73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ---DDRVRSMEQYNFRYAEP--V  145 (291)
T ss_dssp             HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT---CTTEEEECSCCGGGCCG--G
T ss_pred             HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh---CcccceecccCceecch--h
Confidence            456777775 44 4679999999999999998886 557999999999999875332   2455433 334433321  1


Q ss_pred             hcCCCCCCccEEEEcCCCCc
Q psy7191         151 NMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGvSS  170 (413)
                        .++...+|.|.+|+-+.+
T Consensus       146 --~l~~~~fD~v~~d~sf~s  163 (291)
T 3hp7_A          146 --DFTEGLPSFASIDVSFIS  163 (291)
T ss_dssp             --GCTTCCCSEEEECCSSSC
T ss_pred             --hCCCCCCCEEEEEeeHhh
Confidence              122224899998876543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=96.91  E-value=0.0026  Score=61.55  Aligned_cols=84  Identities=19%  Similarity=0.278  Sum_probs=66.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~  146 (413)
                      ......+++.+. ..++..++|..+|.|..+..+++..|+.+++++|+ +.+++.|+++...  .. +++++.+++.+- 
T Consensus       169 ~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  245 (360)
T 1tw3_A          169 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-  245 (360)
T ss_dssp             TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred             HHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC-
Confidence            345567777775 67788999999999999999999999999999999 9999999876543  23 899999987531 


Q ss_pred             HHHHhcCCCCCCccEEEE
Q psy7191         147 NILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILf  164 (413)
                             ++ ..+|.|++
T Consensus       246 -------~~-~~~D~v~~  255 (360)
T 1tw3_A          246 -------LP-RKADAIIL  255 (360)
T ss_dssp             -------CS-SCEEEEEE
T ss_pred             -------CC-CCccEEEE
Confidence                   11 24788775

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=96.90  E-value=0.0026  Score=58.65  Aligned_cols=77  Identities=19%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      .+.+..+. + ++..++|..+|.|..+..+++.  ..+|+|+|.++.+++.++++...  .  ++.+++.+++       
T Consensus        45 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~--~--~~~~d~~~~~-------  109 (260)
T 2avn_A           45 GSFLEEYL-K-NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--N--VVEAKAEDLP-------  109 (260)
T ss_dssp             HHHHHHHC-C-SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--C--EEECCTTSCC-------
T ss_pred             HHHHHHhc-C-CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCC--C--EEECcHHHCC-------
Confidence            34444443 3 6789999999999999998876  46899999999999999887531  2  6777776543       


Q ss_pred             CCCCCccEEEEc
Q psy7191         154 NNFNSIDGIIMD  165 (413)
Q Consensus       154 ~~~~~VDGILfD  165 (413)
                      ...+.+|.|+..
T Consensus       110 ~~~~~fD~v~~~  121 (260)
T 2avn_A          110 FPSGAFEAVLAL  121 (260)
T ss_dssp             SCTTCEEEEEEC
T ss_pred             CCCCCEEEEEEc
Confidence            223468998853

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.89  E-value=0.0019  Score=65.72  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++..++|+.+|.|..+..+++.  ..+|+|+|.++.|++.|+++.+.  .. +++++++..++.   .      ..+|.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~---~------~~fD~  356 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS---V------KGFDT  356 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC---C------TTCSE
T ss_pred             CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC---c------cCCCE
Confidence            46789999999999999998875  45899999999999999887642  33 889999877641   1      15899


Q ss_pred             EEEcCC
Q psy7191         162 IIMDVG  167 (413)
Q Consensus       162 ILfDLG  167 (413)
                      |++|..
T Consensus       357 Vv~dPP  362 (425)
T 2jjq_A          357 VIVDPP  362 (425)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            997644

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.89  E-value=0.001  Score=62.18  Aligned_cols=73  Identities=19%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ..++..++|..+|.|..+.++++..+  +|+|+|+|+.+++.|+++.+..+ .+.++++++.+   .+.     .+.+|.
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~---~~~-----~~~fD~  187 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALP-----FGPFDL  187 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGG-----GCCEEE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhh---cCc-----CCCCCE
Confidence            35788999999999999988776543  99999999999999988754322 37777776543   232     236899


Q ss_pred             EEEc
Q psy7191         162 IIMD  165 (413)
Q Consensus       162 ILfD  165 (413)
                      |+.+
T Consensus       188 Vv~n  191 (254)
T 2nxc_A          188 LVAN  191 (254)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9975

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=96.88  E-value=0.0045  Score=58.59  Aligned_cols=90  Identities=12%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeC-CHHHHHHHHhhh-----cCC-------CCeEE
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDR-DKESFEKAKTLA-----AND-------PRLVP  137 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~Dr-D~~Al~~Ak~ll-----~~~-------~rv~~  137 (413)
                      +|.+.+..... ..++..++|..+|.|..+..++.. +..+|+|+|+ ++.+++.|+++.     +..       +++.+
T Consensus        66 ~l~~~l~~~~~-~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~  143 (281)
T 3bzb_A           66 ALADTLCWQPE-LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV  143 (281)
T ss_dssp             HHHHHHHHCGG-GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred             HHHHHHHhcch-hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence            34444444432 356789999999999988877654 4459999999 999999998876     322       25777


Q ss_pred             EecCCCC-hHHHHHhcCCCCCCccEEEE
Q psy7191         138 VYGKFSD-LPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       138 i~~nFs~-l~~~L~~~~~~~~~VDGILf  164 (413)
                      +..+..+ ...+....  ..+.+|.|+.
T Consensus       144 ~~~~~~~~~~~~~~~~--~~~~fD~Ii~  169 (281)
T 3bzb_A          144 VPYRWGDSPDSLQRCT--GLQRFQVVLL  169 (281)
T ss_dssp             EECCTTSCTHHHHHHH--SCSSBSEEEE
T ss_pred             EEecCCCccHHHHhhc--cCCCCCEEEE
Confidence            7555444 33333211  1236899885

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=96.86  E-value=0.00033  Score=67.38  Aligned_cols=81  Identities=11%  Similarity=0.058  Sum_probs=56.7

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh---cCCC-CeEEE--ecCCCChH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA---ANDP-RLVPV--YGKFSDLP  146 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll---~~~~-rv~~i--~~nFs~l~  146 (413)
                      +.+.++... ++++..++|+.||.||.|..+++.   ++|+|+|+++ ++..+++..   +.++ ++.++  ++++.+++
T Consensus        71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~  145 (276)
T 2wa2_A           71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME  145 (276)
T ss_dssp             HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC
T ss_pred             HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC
Confidence            455555533 678899999999999999999887   6899999998 332232211   1122 67888  77766532


Q ss_pred             HHHHhcCCCCCCccEEEEcCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLG  167 (413)
                               .+.+|.|+.|.+
T Consensus       146 ---------~~~fD~Vvsd~~  157 (276)
T 2wa2_A          146 ---------PFQADTVLCDIG  157 (276)
T ss_dssp             ---------CCCCSEEEECCC
T ss_pred             ---------CCCcCEEEECCC
Confidence                     246999998876

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=96.86  E-value=0.0026  Score=62.55  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L  149 (413)
                      ...+++.+. ..++..++|..+|.|..+..+++.+|+.+++++|+ |.+++.|++.....   ++++++.++|..     
T Consensus       191 ~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-----  263 (369)
T 3gwz_A          191 AGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-----  263 (369)
T ss_dssp             HHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-----
T ss_pred             HHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-----
Confidence            456666664 66788999999999999999999999999999999 99999998865432   389999999852     


Q ss_pred             HhcCCCCCCccEEEEc
Q psy7191         150 KNMNNNFNSIDGIIMD  165 (413)
Q Consensus       150 ~~~~~~~~~VDGILfD  165 (413)
                         .++ ..+|.|++-
T Consensus       264 ---~~p-~~~D~v~~~  275 (369)
T 3gwz_A          264 ---TIP-DGADVYLIK  275 (369)
T ss_dssp             ---CCC-SSCSEEEEE
T ss_pred             ---CCC-CCceEEEhh
Confidence               112 258888753

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=96.84  E-value=0.00043  Score=67.38  Aligned_cols=73  Identities=15%  Similarity=0.108  Sum_probs=52.8

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeC----CHHHHHHHHhhhcCC--CCeEEEec-CCCChHHHHHhcCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDR----DKESFEKAKTLAAND--PRLVPVYG-KFSDLPNILKNMNNN  155 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~Dr----D~~Al~~Ak~ll~~~--~rv~~i~~-nFs~l~~~L~~~~~~  155 (413)
                      .+++..+||+.||.||.|..+++.   ++|+|+|.    .+..++..  ..+..  ++++++.+ ++..++         
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~---------  145 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP---------  145 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC---------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC---------
Confidence            567899999999999999999887   57999999    44322111  11122  47888888 665542         


Q ss_pred             CCCccEEEEcCCCC
Q psy7191         156 FNSIDGIIMDVGIS  169 (413)
Q Consensus       156 ~~~VDGILfDLGvS  169 (413)
                      ...||.|+.|.+++
T Consensus       146 ~~~fD~V~sd~~~~  159 (305)
T 2p41_A          146 PERCDTLLCDIGES  159 (305)
T ss_dssp             CCCCSEEEECCCCC
T ss_pred             cCCCCEEEECCccc
Confidence            23699999998875

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.83  E-value=0.0027  Score=64.38  Aligned_cols=77  Identities=16%  Similarity=0.008  Sum_probs=61.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcC--CC-C-eEEEecCCCChHHHHH-hcCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAAN--DP-R-LVPVYGKFSDLPNILK-NMNNNFN  157 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~--~~-r-v~~i~~nFs~l~~~L~-~~~~~~~  157 (413)
                      +++..++|+.+|.|+-+..++.+.++ .+|+++|+|+.|++.++++++.  .. + +++++++-   .+++. ..+   .
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da---~~~l~~~~~---~  124 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEA---NFFLRKEWG---F  124 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH---HHHHHSCCS---S
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCH---HHHHHHhhC---C
Confidence            46789999999999999999988755 6899999999999999987653  23 4 88887763   44565 432   3


Q ss_pred             CccEEEEcC
Q psy7191         158 SIDGIIMDV  166 (413)
Q Consensus       158 ~VDGILfDL  166 (413)
                      .+|.|++|-
T Consensus       125 ~fD~V~lDP  133 (392)
T 3axs_A          125 GFDYVDLDP  133 (392)
T ss_dssp             CEEEEEECC
T ss_pred             CCcEEEECC
Confidence            699999887

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=96.83  E-value=0.0019  Score=62.04  Aligned_cols=79  Identities=18%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHh
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~  151 (413)
                      .+++.+. ..+...++|..+|.|..+..+++.+|+.+++++|. |.+++.|++.....   ++++++.++|.+       
T Consensus       160 ~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------  230 (332)
T 3i53_A          160 GIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-------  230 (332)
T ss_dssp             TGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-------
T ss_pred             HHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-------
Confidence            4455553 45678999999999999999999999999999999 99999998765432   389999998842       


Q ss_pred             cCCCCCCccEEEE
Q psy7191         152 MNNNFNSIDGIIM  164 (413)
Q Consensus       152 ~~~~~~~VDGILf  164 (413)
                       .++ ..+|.|++
T Consensus       231 -~~p-~~~D~v~~  241 (332)
T 3i53_A          231 -PLP-AGAGGYVL  241 (332)
T ss_dssp             -CCC-CSCSEEEE
T ss_pred             -CCC-CCCcEEEE
Confidence             111 15888875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=96.76  E-value=0.0037  Score=61.20  Aligned_cols=81  Identities=19%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~  150 (413)
                      +.+++.+. ..++..++|..+|.|..+..+++. +.++|+|+|.++ +++.|+++.+.  . ++++++++++.++.    
T Consensus        40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~----  112 (348)
T 2y1w_A           40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----  112 (348)
T ss_dssp             HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----
T ss_pred             HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC----
Confidence            45566665 567899999999999999888775 567999999997 66778776542  3 48999999988752    


Q ss_pred             hcCCCCCCccEEEEc
Q psy7191         151 NMNNNFNSIDGIIMD  165 (413)
Q Consensus       151 ~~~~~~~~VDGILfD  165 (413)
                         . ++++|.|+.+
T Consensus       113 ---~-~~~~D~Ivs~  123 (348)
T 2y1w_A          113 ---L-PEQVDIIISE  123 (348)
T ss_dssp             ---C-SSCEEEEEEC
T ss_pred             ---C-CCceeEEEEe
Confidence               1 2469999976

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=96.74  E-value=0.0034  Score=64.83  Aligned_cols=81  Identities=19%  Similarity=0.266  Sum_probs=62.3

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~  150 (413)
                      +.+++.+. ..++..++|..+|.|..+..+++ .+..+|+|+|.++ +++.|+++.+.  . ++++++++++.++.    
T Consensus       148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~----  220 (480)
T 3b3j_A          148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS----  220 (480)
T ss_dssp             HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC----
T ss_pred             HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc----
Confidence            34566664 55788999999999998887776 5677999999998 88888876543  3 48999999987642    


Q ss_pred             hcCCCCCCccEEEEc
Q psy7191         151 NMNNNFNSIDGIIMD  165 (413)
Q Consensus       151 ~~~~~~~~VDGILfD  165 (413)
                         + ++++|.|+.+
T Consensus       221 ---~-~~~fD~Ivs~  231 (480)
T 3b3j_A          221 ---L-PEQVDIIISE  231 (480)
T ss_dssp             ---C-SSCEEEEECC
T ss_pred             ---c-CCCeEEEEEe
Confidence               1 2469999965

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=96.69  E-value=0.0032  Score=62.48  Aligned_cols=74  Identities=19%  Similarity=0.236  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      ..++..++|..+|.|..+..+++. +..+|+|+|.+ .+++.|+++.+.  . +++++++++..++.       .+ +++
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~-~~~  130 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-------LP-EKV  130 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-------CS-SCE
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-------cC-Ccc
Confidence            567899999999999999988876 44599999999 999999876643  2 37999999886543       22 479


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.|+.+.
T Consensus       131 D~Iv~~~  137 (376)
T 3r0q_C          131 DVIISEW  137 (376)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999876

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=96.68  E-value=0.0016  Score=61.97  Aligned_cols=70  Identities=6%  Similarity=-0.011  Sum_probs=56.7

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      .+..++|+.+|.|+-+..+++. + .+|+++|+|+.+++.|++.+..      .+|++++.++-.+.   +       +.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~---~-------~~  139 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD---I-------KK  139 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC---C-------CC
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH---H-------hh
Confidence            3468999999999999999988 7 8999999999999999876532      24899988765432   1       36


Q ss_pred             ccEEEEcC
Q psy7191         159 IDGIIMDV  166 (413)
Q Consensus       159 VDGILfDL  166 (413)
                      +|.|+.|+
T Consensus       140 fD~Ii~d~  147 (262)
T 2cmg_A          140 YDLIFCLQ  147 (262)
T ss_dssp             EEEEEESS
T ss_pred             CCEEEECC
Confidence            99999883

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=96.64  E-value=0.0018  Score=62.55  Aligned_cols=45  Identities=9%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      ++..++|..||+|+++..++.. +.+.|+|+|.++.+++.|+++..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~   92 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYN   92 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHH
Confidence            4789999999999999887764 34689999999999999987643

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=96.57  E-value=0.0027  Score=60.72  Aligned_cols=82  Identities=21%  Similarity=0.242  Sum_probs=64.3

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~  148 (413)
                      ....+++.+. ..+ ..++|..+|.|..+..+++.+|+.+++++|. +.+++.|+++....   ++++++.+++.+ +  
T Consensus       156 ~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~--  229 (334)
T 2ip2_A          156 AFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E--  229 (334)
T ss_dssp             HHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C--
T ss_pred             HHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C--
Confidence            3456666664 555 8999999999999999999999999999999 99999998765432   489999998864 1  


Q ss_pred             HHhcCCCCCCccEEEEc
Q psy7191         149 LKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       149 L~~~~~~~~~VDGILfD  165 (413)
                           ++ ..+|.|++.
T Consensus       230 -----~~-~~~D~v~~~  240 (334)
T 2ip2_A          230 -----VP-SNGDIYLLS  240 (334)
T ss_dssp             -----CC-SSCSEEEEE
T ss_pred             -----CC-CCCCEEEEc
Confidence                 11 358999843

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=96.57  E-value=0.0045  Score=60.09  Aligned_cols=73  Identities=26%  Similarity=0.341  Sum_probs=57.1

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .++..++|..+|.|.-+..+++. +..+|+|+|.+ .+++.|+++.+.  . +++++++++..++.       ++.+++|
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~~~D  107 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH-------LPFPKVD  107 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-------CSSSCEE
T ss_pred             cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc-------CCCCccc
Confidence            46789999999999988887765 55699999999 588888876543  3 37999999987752       2225799


Q ss_pred             EEEEc
Q psy7191         161 GIIMD  165 (413)
Q Consensus       161 GILfD  165 (413)
                      .|+.+
T Consensus       108 ~Ivs~  112 (328)
T 1g6q_1          108 IIISE  112 (328)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99976

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.46  E-value=0.0013  Score=61.29  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             chHhHHhccCCCC-CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEE-ecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSS-DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPV-YGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~-~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i-~~nFs~l~~~L  149 (413)
                      -+.+.++.+. +. ++..++|.-||+|+.|..+++. +..+|+|+|+++.+++.|++..   +++... ..++..+.  .
T Consensus        24 kL~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~---~~~~~~~~~~~~~~~--~   96 (232)
T 3opn_A           24 KLEKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD---ERVVVMEQFNFRNAV--L   96 (232)
T ss_dssp             HHHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC---TTEEEECSCCGGGCC--G
T ss_pred             HHHHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC---ccccccccceEEEeC--H
Confidence            4667777775 44 4669999999999999999987 4359999999999999876642   344332 12332221  0


Q ss_pred             HhcCCCCCCccEEEEcCCCCcc
Q psy7191         150 KNMNNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGvSS~  171 (413)
                      ..  +....+|.+.+|+-+++.
T Consensus        97 ~~--~~~~~~d~~~~D~v~~~l  116 (232)
T 3opn_A           97 AD--FEQGRPSFTSIDVSFISL  116 (232)
T ss_dssp             GG--CCSCCCSEEEECCSSSCG
T ss_pred             hH--cCcCCCCEEEEEEEhhhH
Confidence            11  111136788888877664

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.42  E-value=0.0043  Score=67.05  Aligned_cols=77  Identities=14%  Similarity=0.058  Sum_probs=59.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC--CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP--RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~--rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +|..++|+.+|.|+.|.+++.. ...+|+|+|+++.|++.|+++.+.  ..  ++.+++++..   +++...+   +.+|
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~---~~l~~~~---~~fD  611 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCL---AWLREAN---EQFD  611 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHH---HHHHHCC---CCEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH---HHHHhcC---CCcc
Confidence            6789999999999999998874 335899999999999999886542  22  7999987743   3455432   4699


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .|++|..+
T Consensus       612 ~Ii~DPP~  619 (703)
T 3v97_A          612 LIFIDPPT  619 (703)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCcc
Confidence            99977654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=96.40  E-value=0.0035  Score=56.93  Aligned_cols=48  Identities=13%  Similarity=0.058  Sum_probs=40.2

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      ..++..++|..+|.|.++..++...+ .+|+|+|.++.+++.+++++..
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~  101 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKK  101 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTT
T ss_pred             ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhc
Confidence            35678999999999999888776544 5899999999999999887654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.39  E-value=0.0076  Score=56.73  Aligned_cols=104  Identities=17%  Similarity=0.199  Sum_probs=61.0

Q ss_pred             hhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHh----cCCCEE--EEEeCCHHHHHHHHhhhcCC-
Q psy7191          60 LSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN----IGNVKV--ICLDRDKESFEKAKTLAAND-  132 (413)
Q Consensus        60 ~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~----~p~g~V--ia~DrD~~Al~~Ak~ll~~~-  132 (413)
                      ...+++.+++|    +++..+..+.++..++|..+|+|.-|..+|..    .|.+.|  +|+|.++.+++.|+++.+.. 
T Consensus        31 ~~~~~~~~~l~----~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~  106 (292)
T 2aot_A           31 CMQEFMDKKLP----GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS  106 (292)
T ss_dssp             HHHHHHHHTHH----HHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHhch----hHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc
Confidence            33444444444    33333321356779999999999777665543    467755  99999999999998876432 


Q ss_pred             --CCeE--EEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         133 --PRLV--PVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       133 --~rv~--~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                        +++.  +..++...+..-+. .+...+.+|.|++-..+
T Consensus       107 ~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~fD~V~~~~~l  145 (292)
T 2aot_A          107 NLENVKFAWHKETSSEYQSRML-EKKELQKWDFIHMIQML  145 (292)
T ss_dssp             SCTTEEEEEECSCHHHHHHHHH-TTTCCCCEEEEEEESCG
T ss_pred             CCCcceEEEEecchhhhhhhhc-cccCCCceeEEEEeeee
Confidence              2343  33443322211111 11223479999965433

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=96.37  E-value=0.0096  Score=62.38  Aligned_cols=94  Identities=10%  Similarity=-0.065  Sum_probs=67.3

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC------------------CCEEEEEeCCHHHHHHHHhhhc--CCC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG------------------NVKVICLDRDKESFEKAKTLAA--NDP  133 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p------------------~g~Via~DrD~~Al~~Ak~ll~--~~~  133 (413)
                      +-+++.+. +.++..++|.+||.||-....++.+.                  ...+||+|+|+.+++.|+.++.  ...
T Consensus       159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~  237 (541)
T 2ar0_A          159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE  237 (541)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence            33455555 77888999999999998888776642                  1379999999999999986543  222


Q ss_pred             C-----eEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCcc
Q psy7191         134 R-----LVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN  174 (413)
Q Consensus       134 r-----v~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld  174 (413)
                      .     +.+++++.-..+..  .    ...+|.|+.|-.|+...-.
T Consensus       238 ~~~~~~~~I~~gDtL~~~~~--~----~~~fD~Vv~NPPf~~~~~~  277 (541)
T 2ar0_A          238 GNLDHGGAIRLGNTLGSDGE--N----LPKAHIVATNPPFGSAAGT  277 (541)
T ss_dssp             CBGGGTBSEEESCTTSHHHH--T----SCCEEEEEECCCCTTCSSC
T ss_pred             ccccccCCeEeCCCcccccc--c----ccCCeEEEECCCcccccch
Confidence            2     77888886543311  1    1369999999998765543

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=96.34  E-value=0.0044  Score=63.66  Aligned_cols=101  Identities=15%  Similarity=0.272  Sum_probs=71.7

Q ss_pred             HHHhHHhhhhhc----cC-Cc-cccchHhHHhccCCCCCCCEEEEEecC------CchhHHHHHHhc-CCCEEEEEeCCH
Q psy7191          53 NLASLKRLSEDI----YN-KK-YPRTFQTSASGLNDSSDDVTMIDMTYG------DGNHTRLILENI-GNVKVICLDRDK  119 (413)
Q Consensus        53 ~~~sl~~~~~n~----y~-~H-~pvll~evi~~L~~~~~~~i~VDaTlG------~GGHS~aILe~~-p~g~Via~DrD~  119 (413)
                      .+.++.+++..+    |+ .| |.-+.+..+..+.  .++..++|.-||      .||.|..+++.+ |+++|+|+|+++
T Consensus       180 ~~~~fd~lA~~Y~tDK~~~~h~y~~~Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp  257 (419)
T 3sso_A          180 RKPDLSELSSRYFTPKFGFLHWFTPHYDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMD  257 (419)
T ss_dssp             CCCCHHHHHHHTTCTTBSSSCBCHHHHHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCccHHHHHHHhCCCcccccchHHHHHHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCH
Confidence            344555555543    44 33 4457777777774  346799999999      688899999875 899999999999


Q ss_pred             HHHHHHHhhhcCCCCeEEEecCCCChHHH--HHhcCCCCCCccEEEEc
Q psy7191         120 ESFEKAKTLAANDPRLVPVYGKFSDLPNI--LKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       120 ~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~--L~~~~~~~~~VDGILfD  165 (413)
                      .+.       ...+++++++++..+++-.  +.+.   .+.||.|+.|
T Consensus       258 ~m~-------~~~~rI~fv~GDa~dlpf~~~l~~~---d~sFDlVisd  295 (419)
T 3sso_A          258 KSH-------VDELRIRTIQGDQNDAEFLDRIARR---YGPFDIVIDD  295 (419)
T ss_dssp             CGG-------GCBTTEEEEECCTTCHHHHHHHHHH---HCCEEEEEEC
T ss_pred             HHh-------hcCCCcEEEEecccccchhhhhhcc---cCCccEEEEC
Confidence            862       1235899999999987532  1111   1369999876

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=96.24  E-value=0.011  Score=57.99  Aligned_cols=69  Identities=17%  Similarity=0.087  Sum_probs=57.7

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFS  143 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs  143 (413)
                      ..++++.+. ..+...+||.-+|.|..+.+|++++|+.+++.+|. |.+++.|++..+..  +|++++.++|-
T Consensus       168 ~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~  238 (353)
T 4a6d_A          168 GRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFF  238 (353)
T ss_dssp             HHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred             HHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccc
Confidence            456666664 66778999999999999999999999999999998 88999998876532  49999999974

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=96.16  E-value=0.012  Score=55.02  Aligned_cols=56  Identities=7%  Similarity=0.099  Sum_probs=46.4

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      -.++...+.   +.+.++|.-||.|-=+..++...|..+++|+|+|+.+++.|+++++.
T Consensus        40 Y~~~~~~l~---~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~   95 (200)
T 3fzg_A           40 YTYVFGNIK---HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGK   95 (200)
T ss_dssp             HHHHHHHSC---CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcC---CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            345555553   56799999999998888888778999999999999999999987754

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.04  E-value=0.013  Score=56.87  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=58.8

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---CCCeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---DPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---~~rv~~i~~nFs~l~~~L  149 (413)
                      ..++++.+. ..++..++|.-+|.|..+..+++.+|+.+++++|. +.++.  ++..+.   .++++++.++|..     
T Consensus       173 ~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-----  243 (348)
T 3lst_A          173 HLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-----  243 (348)
T ss_dssp             HHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-----
T ss_pred             HHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-----
Confidence            446677764 67788999999999999999999999999999999 55555  322221   2389999999841     


Q ss_pred             HhcCCCCCCccEEEEc
Q psy7191         150 KNMNNNFNSIDGIIMD  165 (413)
Q Consensus       150 ~~~~~~~~~VDGILfD  165 (413)
                         .++  .+|.|++-
T Consensus       244 ---~~p--~~D~v~~~  254 (348)
T 3lst_A          244 ---EVP--HADVHVLK  254 (348)
T ss_dssp             ---CCC--CCSEEEEE
T ss_pred             ---CCC--CCcEEEEe
Confidence               111  58888854

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=96.00  E-value=0.017  Score=56.82  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=54.0

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD  144 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~  144 (413)
                      ...+++.+....+...++|.-+|.|..+..|++++|+.+++++|. |.+++.|++    .++++++.++|.+
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~  255 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ----FPGVTHVGGDMFK  255 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh----cCCeEEEeCCcCC
Confidence            455666653245678999999999999999999999999999999 888876643    3589999988754

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=95.95  E-value=0.0097  Score=58.57  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCC
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSD  144 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~  144 (413)
                      +...+++.+....+...++|.-+|.|..+..|++++|+.+++++|. |.+++.|++    .++++++.++|.+
T Consensus       190 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~  257 (368)
T 3reo_A          190 TMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA----FSGVEHLGGDMFD  257 (368)
T ss_dssp             HHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT
T ss_pred             HHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh----cCCCEEEecCCCC
Confidence            3455666653245678999999999999999999999999999999 988876643    2589999988753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.93  E-value=0.011  Score=63.81  Aligned_cols=91  Identities=11%  Similarity=-0.012  Sum_probs=63.2

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc------------------------------------------CC
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI------------------------------------------GN  109 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~------------------------------------------p~  109 (413)
                      |...++.... ..++..++|-.||.|+-....+...                                          +.
T Consensus       178 LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~  256 (703)
T 3v97_A          178 LAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYS  256 (703)
T ss_dssp             HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCC
Confidence            3344444443 6778899999999997665444321                                          23


Q ss_pred             CEEEEEeCCHHHHHHHHhhhcCC--C-CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         110 VKVICLDRDKESFEKAKTLAAND--P-RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       110 g~Via~DrD~~Al~~Ak~ll~~~--~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      .+|+|+|+|+.|++.|++++...  . .+++.++++.++..     ....+.+|.|+.|-.|
T Consensus       257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~-----~~~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTN-----PLPKGPYGTVLSNPPY  313 (703)
T ss_dssp             CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCC-----SCTTCCCCEEEECCCC
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcc-----ccccCCCCEEEeCCCc
Confidence            58999999999999999876533  3 69999999876421     1111268999999655

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=95.75  E-value=0.0097  Score=53.28  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      ++.++|..+|.|..+..+++.      +|+|.++.+++.++++     ++.++.+++.+++       ...+.+|.|+..
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~-------~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----GVFVLKGTAENLP-------LKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----TCEEEECBTTBCC-------SCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----CCEEEEcccccCC-------CCCCCeeEEEEc
Confidence            789999999999998887654      9999999999998875     5778888776542       223469999865


Q ss_pred             C
Q psy7191         166 V  166 (413)
Q Consensus       166 L  166 (413)
                      .
T Consensus       110 ~  110 (219)
T 1vlm_A          110 T  110 (219)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=95.59  E-value=0.018  Score=56.43  Aligned_cols=78  Identities=19%  Similarity=0.194  Sum_probs=59.4

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ...+++.+....++..++|.-+|.|..+..+++++|+.+++++|. |.+++.|++    .++++++.++|.+ +      
T Consensus       197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~------  264 (372)
T 1fp1_D          197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP----LSGIEHVGGDMFA-S------  264 (372)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----CTTEEEEECCTTT-C------
T ss_pred             HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh----cCCCEEEeCCccc-C------
Confidence            355555552245678999999999999999999999999999999 998877654    3579999988854 1      


Q ss_pred             CCCCCCccEEEEc
Q psy7191         153 NNNFNSIDGIIMD  165 (413)
Q Consensus       153 ~~~~~~VDGILfD  165 (413)
                       ++  .+|.|++-
T Consensus       265 -~~--~~D~v~~~  274 (372)
T 1fp1_D          265 -VP--QGDAMILK  274 (372)
T ss_dssp             -CC--CEEEEEEE
T ss_pred             -CC--CCCEEEEe
Confidence             12  27888753

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.56  E-value=0.051  Score=54.37  Aligned_cols=84  Identities=13%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             hccCCcc---ccchHhHHhccCCCC------CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSS------DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP  133 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~------~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~  133 (413)
                      -.|++|+   |-+++.+++.+. +.      ++..+|++--|.|..|..||+.....+|+++++|+..+..-+++. .++
T Consensus        28 k~lGQnFL~d~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~~  105 (353)
T 1i4w_A           28 FFYGFKYLWNPTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EGS  105 (353)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TTS
T ss_pred             CCCCcCccCCHHHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cCC
Confidence            4556654   446677777775 54      358999999999999999999754468999999999888877665 456


Q ss_pred             CeEEEecCCCChHHH
Q psy7191         134 RLVPVYGKFSDLPNI  148 (413)
Q Consensus       134 rv~~i~~nFs~l~~~  148 (413)
                      +++++++++-.++.+
T Consensus       106 ~l~ii~~D~l~~~~~  120 (353)
T 1i4w_A          106 PLQILKRDPYDWSTY  120 (353)
T ss_dssp             SCEEECSCTTCHHHH
T ss_pred             CEEEEECCccchhhH
Confidence            999999999776643

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.26  E-value=0.022  Score=54.53  Aligned_cols=57  Identities=11%  Similarity=-0.041  Sum_probs=44.1

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      -|++.+++.+.  .++++++|.-+|.|--+.+.+.  -+.+++|+|+++.+++.|+++++.
T Consensus       223 ~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~--~g~~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          223 ELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAAR--WGRRALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHH--TTCEEEEEESCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHH--cCCeEEEEeCCHHHHHHHHHHHHH
Confidence            46667777663  6889999999999955544443  356899999999999999887643

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=95.25  E-value=0.03  Score=58.87  Aligned_cols=83  Identities=14%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc---CCCEEEEEeCCHHHHHHHHhhh--cCC--CCeEEEecCCCChHHHHHhcCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI---GNVKVICLDRDKESFEKAKTLA--AND--PRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~---p~g~Via~DrD~~Al~~Ak~ll--~~~--~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      +.++..++|-|||.||-...+++.+   +...++|+|+|+.+++.|+.++  ...  +++.+.++++-..+  +.  ...
T Consensus       219 ~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d--~p--~~~  294 (542)
T 3lkd_A          219 DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDED--WP--TQE  294 (542)
T ss_dssp             TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSC--SC--CSS
T ss_pred             CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccc--cc--ccc
Confidence            4578899999999999988888875   2579999999999999997643  333  36788888754321  00  011


Q ss_pred             CCCccEEEEcCCCC
Q psy7191         156 FNSIDGIIMDVGIS  169 (413)
Q Consensus       156 ~~~VDGILfDLGvS  169 (413)
                      ...+|.||.|-.|+
T Consensus       295 ~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          295 PTNFDGVLMNPPYS  308 (542)
T ss_dssp             CCCBSEEEECCCTT
T ss_pred             cccccEEEecCCcC
Confidence            24799999999997

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=95.18  E-value=0.019  Score=55.62  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=53.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .++..++|.-+|.|..+..|++.+|+.+++++|. |.+++.|++    .++++++.++|.+ +       ++  .+|.|+
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~-------~p--~~D~v~  251 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG----SNNLTYVGGDMFT-S-------IP--NADAVL  251 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC----BTTEEEEECCTTT-C-------CC--CCSEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc----CCCcEEEeccccC-C-------CC--CccEEE
Confidence            4568999999999999999999999999999999 999887754    2468888888743 1       11  378887


Q ss_pred             E
Q psy7191         164 M  164 (413)
Q Consensus       164 f  164 (413)
                      +
T Consensus       252 ~  252 (352)
T 1fp2_A          252 L  252 (352)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.17  E-value=0.016  Score=56.09  Aligned_cols=134  Identities=13%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             CccHHHHHHHHHHH-------HhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccc----cchHhHHhccCCCCCCCEE
Q psy7191          21 SLDFAEYLRELTRA-------QFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYP----RTFQTSASGLNDSSDDVTM   89 (413)
Q Consensus        21 grdl~~~lr~~~~~-------~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~p----vll~evi~~L~~~~~~~i~   89 (413)
                      |+-||+.-..++-+       +|+.....+++.. ...+.+   ++=..|   .||+    -=|.|+.+... +++++.+
T Consensus        11 g~tlG~~wK~~LN~l~k~~F~~Yk~~gi~Evdr~-~ar~~l---~~g~~~---g~yrSRa~~KL~ei~ek~~-l~~g~~V   82 (267)
T 3p8z_A           11 GETLGEKWKKKLNQLSRKEFDLYKKSGITEVDRT-EAKEGL---KRGETT---HHAVSRGSAKLQWFVERNM-VIPEGRV   82 (267)
T ss_dssp             CCCHHHHHHHHHHHSCHHHHHHHHTTTCEEEECH-HHHHHH---HTTCCS---SCCSSTHHHHHHHHHHTTS-SCCCEEE
T ss_pred             CCcHHHHHHHHHhhcCHHHHHHHhhcCceEeccH-HHHHHH---hcCCcC---CCccchHHHHHHHHHHhcC-CCCCCEE
Confidence            66777766665532       3444555555555 222222   221112   3333    24677777775 8899999


Q ss_pred             EEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEec-CCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191          90 IDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYG-KFSDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus        90 VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~-nFs~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                      ||..++.||-|...+....-.+|+|+|+-+.-.+.- .+.+.|  +-++|+.+ ++..+         .+.++|-||-|+
T Consensus        83 vDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~---------~~~~~DtllcDI  152 (267)
T 3p8z_A           83 IDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYL---------PPEKCDTLLCDI  152 (267)
T ss_dssp             EEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGC---------CCCCCSEEEECC
T ss_pred             EEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeec---------CCccccEEEEec
Confidence            999999999999877776545899999986543210 112233  37888888 76322         124699999999


Q ss_pred             CCCccC
Q psy7191         167 GISDSQ  172 (413)
Q Consensus       167 GvSS~Q  172 (413)
                      |-||.-
T Consensus       153 geSs~~  158 (267)
T 3p8z_A          153 GESSPS  158 (267)
T ss_dssp             CCCCSC
T ss_pred             CCCCCC
Confidence            997754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=95.13  E-value=0.033  Score=58.23  Aligned_cols=71  Identities=15%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      +..++|.-||+|-.|..+.+.  ++.|.|+|..+.+|+.|+......+  ++.+.+++-.++..-.     ..+.||.|+
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~fD~v~  139 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL-----EEGEFDLAI  139 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC-----CTTSCSEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc-----cCCCccEEE
Confidence            457899999999999998876  5789999999999999987654433  6777777665443221     123577665

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=95.13  E-value=0.024  Score=59.58  Aligned_cols=88  Identities=9%  Similarity=-0.045  Sum_probs=58.0

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcC---------------CCEEEEEeCCHHHHHHHHhhhc--CCC-CeEE
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG---------------NVKVICLDRDKESFEKAKTLAA--NDP-RLVP  137 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p---------------~g~Via~DrD~~Al~~Ak~ll~--~~~-rv~~  137 (413)
                      +++.+. +.++ .++|-|||.||-..+.++.+.               ...++|+|+|+.+++.|+.++.  ... ++.+
T Consensus       237 mv~ll~-p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i  314 (544)
T 3khk_A          237 IVEMLE-PYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGK  314 (544)
T ss_dssp             HHHHHC-CCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCS
T ss_pred             HHHHHh-cCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccce
Confidence            344444 6554 899999999988777655432               4589999999999999986542  222 4433


Q ss_pred             EecCCCChHHHHHhcCCCCCCccEEEEcCCCCcc
Q psy7191         138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       138 i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~  171 (413)
                      ++++.-..+      ......+|.||.|-.|+..
T Consensus       315 ~~gDtL~~~------~~~~~~fD~Iv~NPPf~~~  342 (544)
T 3khk_A          315 KNADSFLDD------QHPDLRADFVMTNPPFNMK  342 (544)
T ss_dssp             SSCCTTTSC------SCTTCCEEEEEECCCSSCC
T ss_pred             eccchhcCc------ccccccccEEEECCCcCCc
Confidence            566532111      1112479999999888654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=95.02  E-value=0.016  Score=54.14  Aligned_cols=57  Identities=12%  Similarity=0.037  Sum_probs=41.2

Q ss_pred             hHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          73 FQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        73 l~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      +..+.+.+.. ..++..++|..||.|. +..++...+..+|+|+|+++.+++.|+++++
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~-~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTV-YQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCC-GGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcCh-HHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            3445555531 1367899999999998 4444444455799999999999999988654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.02  E-value=0.034  Score=52.16  Aligned_cols=57  Identities=18%  Similarity=0.168  Sum_probs=45.4

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      -|++.+++..  ..+|++++|.-+|.|  |+++....-+.+++|+|+++.+++.|+++++.
T Consensus       200 ~l~~~~i~~~--~~~~~~vlD~f~GsG--tt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          200 DLIERIIRAS--SNPNDLVLDCFMGSG--TTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             HHHHHHHHHH--CCTTCEEEESSCTTC--HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHh--CCCCCEEEECCCCCC--HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh
Confidence            4677777776  478999999999999  55555443457899999999999999988753

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.01  E-value=0.032  Score=55.34  Aligned_cols=135  Identities=13%  Similarity=0.115  Sum_probs=80.5

Q ss_pred             cCccHHHHHHHHHH----H---HhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccc----cchHhHHhccCCCCCCCE
Q psy7191          20 MSLDFAEYLRELTR----A---QFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYP----RTFQTSASGLNDSSDDVT   88 (413)
Q Consensus        20 ~grdl~~~lr~~~~----~---~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~p----vll~evi~~L~~~~~~~i   88 (413)
                      .|+-||+.-..++-    .   +|+.....+++.. ...+.+.+     .+.-..||+    -=|.|+.+... +++++.
T Consensus        25 ~g~tlG~~wK~~LN~l~k~~F~~Yk~~gi~Evdr~-~ar~~l~~-----g~~~~g~y~SR~~~KL~ei~~~~~-l~~~~~   97 (321)
T 3lkz_A           25 KGRTLGEVWKERLNQMTKEEFTRYRKEAIIEVDRS-AAKHARKE-----GNVTGGHPVSRGTAKLRWLVERRF-LEPVGK   97 (321)
T ss_dssp             -CCSHHHHHHHHHTTSCHHHHHHHTTTTCEEECCH-HHHHHHHH-----TCCSSCCCSSTHHHHHHHHHHTTS-CCCCEE
T ss_pred             CCCchHHHHHHHHhccCHHHHHHHhhcCceeechH-HHHHHHhc-----CcCcCCCccchHHHHHHHHHHhcC-CCCCCE
Confidence            36777776665552    2   3344445555554 22222211     112223333    24677777765 889999


Q ss_pred             EEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEec-CCCChHHHHHhcCCCCCCccEEEEc
Q psy7191          89 MIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYG-KFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        89 ~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~-nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      +||..++.||-|...+....-.+|+|+|+-..-.+.= .+.+.+.  -|+++.+ |+..+..         ..+|.|+.|
T Consensus        98 VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~---------~~~D~ivcD  167 (321)
T 3lkz_A           98 VIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS---------ECCDTLLCD  167 (321)
T ss_dssp             EEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC---------CCCSEEEEC
T ss_pred             EEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC---------CCCCEEEEE
Confidence            9999999999999777665445899999985422100 0111222  4667766 6655432         369999999


Q ss_pred             CCCCcc
Q psy7191         166 VGISDS  171 (413)
Q Consensus       166 LGvSS~  171 (413)
                      +|=||.
T Consensus       168 igeSs~  173 (321)
T 3lkz_A          168 IGESSS  173 (321)
T ss_dssp             CCCCCS
T ss_pred             CccCCC
Confidence            996554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=94.95  E-value=0.016  Score=53.92  Aligned_cols=48  Identities=15%  Similarity=0.055  Sum_probs=38.0

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      +.++..++|..||+|.|+...+.. ...+|+|+|.++.+++.|++.++.
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhc
Confidence            456789999999999888765533 224799999999999999887643

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=94.92  E-value=0.042  Score=53.72  Aligned_cols=85  Identities=11%  Similarity=-0.031  Sum_probs=65.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      +...++|.-||.|==|..++...|..+++|+|+|+.+++.+++++...+ ++.+.+.++..        ..+++.+|.+|
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~--------~~p~~~~DvaL  203 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE--------DRLDEPADVTL  203 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT--------SCCCSCCSEEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecc--------cCCCCCcchHH
Confidence            3568999999999888888877789999999999999999998876544 67777777653        22346799998


Q ss_pred             EcCCCCccCcc-CCCCc
Q psy7191         164 MDVGISDSQAN-STRGF  179 (413)
Q Consensus       164 fDLGvSS~Qld-~~RGF  179 (413)
                      +.+  +-+.|+ ..||=
T Consensus       204 ~lk--ti~~Le~q~kg~  218 (281)
T 3lcv_B          204 LLK--TLPCLETQQRGS  218 (281)
T ss_dssp             ETT--CHHHHHHHSTTH
T ss_pred             HHH--HHHHhhhhhhHH
Confidence            655  456666 55543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=94.85  E-value=0.066  Score=49.61  Aligned_cols=80  Identities=14%  Similarity=0.260  Sum_probs=55.6

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C--C-CeEEEecCCCC---------------
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D--P-RLVPVYGKFSD---------------  144 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~--~-rv~~i~~nFs~---------------  144 (413)
                      +...++..  |+| .|+..+.+.++++|+++|.|++-.+.|++.++.  +  . ++.+++++-..               
T Consensus        30 ~a~~VLEi--GtG-ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~  106 (202)
T 3cvo_A           30 EAEVILEY--GSG-GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS  106 (202)
T ss_dssp             HCSEEEEE--SCS-HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred             CCCEEEEE--Cch-HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence            45688885  455 588887777789999999999999999886653  2  3 89999887432               


Q ss_pred             hHHHHHhc-CC-CCCCccEEEEcCC
Q psy7191         145 LPNILKNM-NN-NFNSIDGIIMDVG  167 (413)
Q Consensus       145 l~~~L~~~-~~-~~~~VDGILfDLG  167 (413)
                      ++.+.... .. ..+.+|.|++|-.
T Consensus       107 l~~~~~~i~~~~~~~~fDlIfIDg~  131 (202)
T 3cvo_A          107 YPDYPLAVWRTEGFRHPDVVLVDGR  131 (202)
T ss_dssp             TTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred             HHHHhhhhhccccCCCCCEEEEeCC
Confidence            33443221 01 1246999998864

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=94.68  E-value=0.026  Score=55.74  Aligned_cols=61  Identities=15%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             cCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhh
Q psy7191          65 YNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTL  128 (413)
Q Consensus        65 y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~l  128 (413)
                      +..|...+.+.+++.+. +.++..++|.-+|.|..+..+.+.  ..+|+|+|.++.+++.|+++
T Consensus        88 ~~~~~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           88 MREHFAMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc
Confidence            33455567777888886 778899999999999999999876  35899999999999999875

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=94.38  E-value=0.071  Score=53.64  Aligned_cols=70  Identities=16%  Similarity=0.242  Sum_probs=52.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      +|++++|.-+|.|--|...+ +....+|||+|.++ +++.|++..+.  +. ++++++++..+++       + +++||.
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa-~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-------l-pe~~Dv  152 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCA-QAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-------L-PEQVDA  152 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHH-HTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-------C-SSCEEE
T ss_pred             CCCEEEEeCCCccHHHHHHH-HhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-------C-CccccE
Confidence            58899999999997765443 44446999999997 56777775442  33 8999999987752       2 257999


Q ss_pred             EEE
Q psy7191         162 IIM  164 (413)
Q Consensus       162 ILf  164 (413)
                      |+-
T Consensus       153 ivs  155 (376)
T 4hc4_A          153 IVS  155 (376)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            984

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=94.15  E-value=0.24  Score=47.79  Aligned_cols=82  Identities=10%  Similarity=-0.066  Sum_probs=59.8

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+.+.++|.-||.|==+..++   |..+++|+|+|+.+++.+++.+... .++.+...++..-        ..++.+|.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~--------~~~~~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCA--------PPAEAGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTS--------CCCCBCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccC--------CCCCCcchH
Confidence            357899999999995555554   8899999999999999999876543 3788888877642        224578988


Q ss_pred             EEcCCCCccCcc-CCCC
Q psy7191         163 IMDVGISDSQAN-STRG  178 (413)
Q Consensus       163 LfDLGvSS~Qld-~~RG  178 (413)
                      |+-+  .-+.|+ -++|
T Consensus       173 Lllk--~lh~LE~q~~~  187 (253)
T 3frh_A          173 LIFK--LLPLLEREQAG  187 (253)
T ss_dssp             EEES--CHHHHHHHSTT
T ss_pred             HHHH--HHHHhhhhchh
Confidence            7443  335666 4554

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=93.97  E-value=0.1  Score=46.07  Aligned_cols=67  Identities=18%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      +++++.+....++..++|..+|.|..+..+.     .+|+|+|.++.             ++.++++++.+++       
T Consensus        56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-------------~~~~~~~d~~~~~-------  110 (215)
T 2zfu_A           56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-------------DPRVTVCDMAQVP-------  110 (215)
T ss_dssp             HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-------------STTEEESCTTSCS-------
T ss_pred             HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-------------CceEEEeccccCC-------
Confidence            4455555434567899999999998877662     57999999987             3455677766532       


Q ss_pred             CCCCCccEEEEc
Q psy7191         154 NNFNSIDGIIMD  165 (413)
Q Consensus       154 ~~~~~VDGILfD  165 (413)
                      .+.+.+|.|+..
T Consensus       111 ~~~~~fD~v~~~  122 (215)
T 2zfu_A          111 LEDESVDVAVFC  122 (215)
T ss_dssp             CCTTCEEEEEEE
T ss_pred             CCCCCEeEEEEe
Confidence            223468999864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=93.88  E-value=0.06  Score=52.24  Aligned_cols=67  Identities=21%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .++..+||.-+|.|..+..|++.+|+.+++++|. +.+++.|++    +++++++.++|.+ +       ++  .+|.|+
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~-------~~--~~D~v~  256 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-S-------IP--SADAVL  256 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-C-------CC--CCSEEE
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-C-------CC--CceEEE
Confidence            3567999999999999999999999999999999 888876643    3468888888754 1       11  378888


Q ss_pred             Ec
Q psy7191         164 MD  165 (413)
Q Consensus       164 fD  165 (413)
                      +-
T Consensus       257 ~~  258 (358)
T 1zg3_A          257 LK  258 (358)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.72  E-value=0.036  Score=54.22  Aligned_cols=95  Identities=8%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             CccHHHHHHHHHHHH-------hhcCCcccchhHHHHHHHHHhHHhhhhh-ccCCccccchHhHHhccCCCCCCCEEEEE
Q psy7191          21 SLDFAEYLRELTRAQ-------FVSNNKFTIEEEETLKKNLASLKRLSED-IYNKKYPRTFQTSASGLNDSSDDVTMIDM   92 (413)
Q Consensus        21 grdl~~~lr~~~~~~-------~~~~~~~~~~~~e~~~~~~~sl~~~~~n-~y~~H~pvll~evi~~L~~~~~~~i~VDa   92 (413)
                      |+-||+....++-+-       |..-...+++.. ...+.   |++=..+ +|.--=--=|.|..+-.. +++++.+||+
T Consensus        23 ~~tlg~~wk~~ln~l~k~~f~~y~~~~i~e~~r~-~ar~~---l~~~~~~g~YrSRAAfKL~ei~eK~~-Lk~~~~VLDL   97 (282)
T 3gcz_A           23 GMTPGEAWKKQLNKLGKTQFEQYKRSCILEVDRT-HARDS---LENGIQNGIAVSRGSAKLRWMEERGY-VKPTGIVVDL   97 (282)
T ss_dssp             -CCHHHHHHHHHHHCCHHHHHHHHTTTCEEECCH-HHHHH---HHHTCCSSBCSSTHHHHHHHHHHTTS-CCCCEEEEEE
T ss_pred             CCcHHHHHHHHHHhhhHHHHHhhhhhceeeccHH-HHHHH---HhcCCcCCCEecHHHHHHHHHHHhcC-CCCCCEEEEe
Confidence            577787777776432       333334444443 22211   2221112 222211223556666654 7899999999


Q ss_pred             ecCCchhHHHHHHhcCCCEEEEEeCCHH
Q psy7191          93 TYGDGNHTRLILENIGNVKVICLDRDKE  120 (413)
Q Consensus        93 TlG~GGHS~aILe~~p~g~Via~DrD~~  120 (413)
                      .+|.||+|...++..+-..|+|+|+-..
T Consensus        98 GaAPGGWsQvAa~~~gv~sV~GvdvG~d  125 (282)
T 3gcz_A           98 GCGRGGWSYYAASLKNVKKVMAFTLGVQ  125 (282)
T ss_dssp             TCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred             CCCCCHHHHHHHHhcCCCeeeeEEeccC
Confidence            9999999998887766668899998644

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.64  E-value=0.035  Score=54.10  Aligned_cols=65  Identities=14%  Similarity=0.130  Sum_probs=49.6

Q ss_pred             ccCCccc-cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC
Q psy7191          64 IYNKKYP-RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND  132 (413)
Q Consensus        64 ~y~~H~p-vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~  132 (413)
                      .|....| -|++.+|...  ..+|++++|.-+|.|  |+++....-+-+.||+|+++.+.+.|++++...
T Consensus       232 ~~~~~kp~~l~~~~i~~~--~~~~~~VlDpF~GsG--tt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          232 AHPARFPAKLPEFFIRML--TEPDDLVVDIFGGSN--TTGLVAERESRKWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCSSCCCTHHHHHHHHHH--CCTTCEEEETTCTTC--HHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCCCcCCHHHHHHHHHHh--CCCCCEEEECCCCCC--HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence            3444455 4566666655  478999999999999  666665544678999999999999999988653

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=93.30  E-value=0.065  Score=59.44  Aligned_cols=80  Identities=13%  Similarity=0.099  Sum_probs=56.4

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcC---CCEEEEEeCCHHHHHHH--HhhhcC----CC--CeEEEecCCCChHHHHHhc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIG---NVKVICLDRDKESFEKA--KTLAAN----DP--RLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p---~g~Via~DrD~~Al~~A--k~ll~~----~~--rv~~i~~nFs~l~~~L~~~  152 (413)
                      .++..++|-+||.|+=..++++.++   ...++|+|+|+.|++.|  +..+..    .+  ...+..++|......    
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~----  395 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPE----  395 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGG----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccc----
Confidence            3578999999999999998888775   36899999999999998  332221    11  235555655442111    


Q ss_pred             CCCCCCccEEEEcCCCC
Q psy7191         153 NNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       153 ~~~~~~VDGILfDLGvS  169 (413)
                        ....+|.|+.|-.|+
T Consensus       396 --~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          396 --DFANVSVVVMNPPYV  410 (878)
T ss_dssp             --GGTTEEEEEECCBCC
T ss_pred             --ccCCCCEEEECCCcc
Confidence              123699999998885

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=93.26  E-value=0.071  Score=51.14  Aligned_cols=59  Identities=19%  Similarity=0.286  Sum_probs=41.8

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHH--H--HHHhcC----CCEEEEEeCCHHHHHHHHhhh
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTR--L--ILENIG----NVKVICLDRDKESFEKAKTLA  129 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~--a--ILe~~p----~g~Via~DrD~~Al~~Ak~ll  129 (413)
                      .|..++.+.++..    .+...++|+.||+|-.+.  +  +.+.+|    +.+|+|+|+|+.|++.|++..
T Consensus        91 ~~f~~l~~~llp~----~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~  157 (274)
T 1af7_A           91 HHFPILAEHARRR----HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGI  157 (274)
T ss_dssp             THHHHHHHHHHHS----CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTE
T ss_pred             HHHHHHHHHccCC----CCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcC
Confidence            5666666555533    134689999999998543  3  334444    358999999999999998753

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=92.82  E-value=0.055  Score=52.81  Aligned_cols=46  Identities=11%  Similarity=-0.022  Sum_probs=35.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCC
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRD  118 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD  118 (413)
                      =|.|..+... .++++.+||+.+|.||+|...++..+-..+.|+|+-
T Consensus        62 KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVG  107 (277)
T 3evf_A           62 KLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLG  107 (277)
T ss_dssp             HHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred             HHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEe
Confidence            3556666643 788999999999999999988877555567777775

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=92.77  E-value=0.057  Score=52.47  Aligned_cols=63  Identities=16%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             CCCCCEEEEEecCC------chhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCCCeEE-EecCCCChHHHHHhcCC
Q psy7191          83 SSDDVTMIDMTYGD------GNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVP-VYGKFSDLPNILKNMNN  154 (413)
Q Consensus        83 ~~~~~i~VDaTlG~------GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~rv~~-i~~nFs~l~~~L~~~~~  154 (413)
                      ++++..++|..+|+      |+  ..+++..| .++|+|+|+++.        +   +++++ ++++..++.       .
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~-------~  120 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVH-------T  120 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCC-------C
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCC-------c
Confidence            67889999999954      75  44455566 699999999988        1   35777 888875432       1


Q ss_pred             CCCCccEEEEcC
Q psy7191         155 NFNSIDGIIMDV  166 (413)
Q Consensus       155 ~~~~VDGILfDL  166 (413)
                       .+.||.|+.|.
T Consensus       121 -~~~fD~Vvsn~  131 (290)
T 2xyq_A          121 -ANKWDLIISDM  131 (290)
T ss_dssp             -SSCEEEEEECC
T ss_pred             -cCcccEEEEcC
Confidence             14699999773

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=91.95  E-value=0.21  Score=52.12  Aligned_cols=117  Identities=11%  Similarity=0.150  Sum_probs=70.5

Q ss_pred             HHHHHHhH-Hhhhh--hccCCcc-ccc-hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-------------CCE
Q psy7191          50 LKKNLASL-KRLSE--DIYNKKY-PRT-FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-------------NVK  111 (413)
Q Consensus        50 ~~~~~~sl-~~~~~--n~y~~H~-pvl-l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-------------~g~  111 (413)
                      .-.-|+.| .+.++  .-.|++| |.- .+-+++.+. ++++..++|-|||.||--.+..+.+.             ...
T Consensus       178 lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~  256 (530)
T 3ufb_A          178 LSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS  256 (530)
T ss_dssp             HHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh
Confidence            33445544 33332  2345554 432 333444454 88899999999999998766655431             246


Q ss_pred             EEEEeCCHHHHHHHHhh--hcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         112 VICLDRDKESFEKAKTL--AANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       112 Via~DrD~~Al~~Ak~l--l~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                      ++|+|+|+.+...|+-+  +.......+.+++.-..+  +...+ ...++|.||.|-.++.
T Consensus       257 i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~--~~~~~-~~~~fD~Il~NPPf~~  314 (530)
T 3ufb_A          257 IFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFP--LREMG-DKDRVDVILTNPPFGG  314 (530)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSC--GGGCC-GGGCBSEEEECCCSSC
T ss_pred             hhhhhccHHHHHHHHHHHHhcCCccccccccccccCc--hhhhc-ccccceEEEecCCCCc
Confidence            99999999999998753  334334455666542211  11111 1236999999988864

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=91.71  E-value=0.88  Score=44.47  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-------CCCCeEEEecCCCChHHHHHhcCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-------NDPRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-------~~~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ++| +.++=.-.|.||=.+.+|+..|..+|..+|+|+..++.+++-+.       ..+|++++.++-..   ++++.   
T Consensus        82 p~p-k~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~---~l~~~---  154 (294)
T 3o4f_A           82 GHA-KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVN---FVNQT---  154 (294)
T ss_dssp             SCC-CEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTT---TTSCS---
T ss_pred             CCC-CeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHH---HHhhc---
Confidence            444 45566788889989999977666799999999999999987542       12599998887543   34332   


Q ss_pred             CCCccEEEEcC
Q psy7191         156 FNSIDGIIMDV  166 (413)
Q Consensus       156 ~~~VDGILfDL  166 (413)
                      .+++|.|+.|+
T Consensus       155 ~~~yDvIi~D~  165 (294)
T 3o4f_A          155 SQTFDVIISDC  165 (294)
T ss_dssp             SCCEEEEEESC
T ss_pred             cccCCEEEEeC
Confidence            35799999996

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=90.92  E-value=0.42  Score=48.05  Aligned_cols=48  Identities=17%  Similarity=0.239  Sum_probs=41.3

Q ss_pred             CCCCCEEEEEecCCchhHHHHH-HhcCC-CEEEEEeCCHHHHHHHHhhhc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLIL-ENIGN-VKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aIL-e~~p~-g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      +.+++++||+-++-|.+|..++ ...++ ++||||+-+|.+++..+++++
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~  273 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  273 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            5789999999999999999988 44554 899999999999998777654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=89.54  E-value=0.22  Score=49.13  Aligned_cols=46  Identities=9%  Similarity=-0.025  Sum_probs=35.8

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDK  119 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~  119 (413)
                      |.|..+. .-..++..+||+++|.||.|..+++..+-..|+|+|+..
T Consensus        70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~  115 (300)
T 3eld_A           70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI  115 (300)
T ss_dssp             HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred             HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence            3444444 225688999999999999999999876656789999964

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=89.52  E-value=0.32  Score=47.56  Aligned_cols=60  Identities=22%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             ccc-cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCH---HHHHHHHhhhcC
Q psy7191          68 KYP-RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDK---ESFEKAKTLAAN  131 (413)
Q Consensus        68 H~p-vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~---~Al~~Ak~ll~~  131 (413)
                      ..| -|++.+|...  ..+|++++|.-+|.|  |+++....-+-+.||+|+++   ..++.|++++..
T Consensus       226 ~kp~~l~~~~i~~~--~~~~~~vlDpF~GsG--tt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          226 QKPAAVIERLVRAL--SHPGSTVLDFFAGSG--VTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             CCCHHHHHHHHHHH--SCTTCEEEETTCTTC--HHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHh--CCCCCEEEecCCCCC--HHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHH
Confidence            344 4666666665  478999999999999  55555543356889999999   999999888754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=88.82  E-value=0.7  Score=46.79  Aligned_cols=77  Identities=10%  Similarity=0.088  Sum_probs=55.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +++|..+||..++.||-|..++++  +++|+|+|.-+-+-    . +...++|++++++.....       .....||-|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~----~-l~~~~~V~~~~~d~~~~~-------~~~~~~D~v  274 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQ----S-LMDTGQVTWLREDGFKFR-------PTRSNISWM  274 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCH----H-HHTTTCEEEECSCTTTCC-------CCSSCEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcCh----h-hccCCCeEEEeCcccccc-------CCCCCcCEE
Confidence            568999999999999999999987  58999999753211    1 112468999988754321       112469999


Q ss_pred             EEcCCCCccCc
Q psy7191         163 IMDVGISDSQA  173 (413)
Q Consensus       163 LfDLGvSS~Ql  173 (413)
                      +-|.-....++
T Consensus       275 vsDm~~~p~~~  285 (375)
T 4auk_A          275 VCDMVEKPAKV  285 (375)
T ss_dssp             EECCSSCHHHH
T ss_pred             EEcCCCChHHh
Confidence            98887765443

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=88.67  E-value=1.2  Score=45.08  Aligned_cols=75  Identities=16%  Similarity=0.091  Sum_probs=53.5

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-----C-----CCeEEEecCC-CChHHHHHhcCCC
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-----D-----PRLVPVYGKF-SDLPNILKNMNNN  155 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-----~-----~rv~~i~~nF-s~l~~~L~~~~~~  155 (413)
                      ..++=.-.|.||=.+++|+. |..+|..+|+||..++.+++-+..     +     +|++++.++- ..+.+..+.    
T Consensus       207 krVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~----  281 (381)
T 3c6k_A          207 KDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE----  281 (381)
T ss_dssp             CEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH----
T ss_pred             CeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc----
Confidence            45666788999999999975 557999999999999999885431     1     2688876653 333333332    


Q ss_pred             CCCccEEEEcC
Q psy7191         156 FNSIDGIIMDV  166 (413)
Q Consensus       156 ~~~VDGILfDL  166 (413)
                      ..++|.|+.|+
T Consensus       282 ~~~yDvIIvDl  292 (381)
T 3c6k_A          282 GREFDYVINDL  292 (381)
T ss_dssp             TCCEEEEEEEC
T ss_pred             cCceeEEEECC
Confidence            13699999886

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=88.41  E-value=1.3  Score=44.20  Aligned_cols=77  Identities=23%  Similarity=0.176  Sum_probs=53.1

Q ss_pred             EEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH-HHHHhcCCCCCCccEEEEcC
Q psy7191          88 TMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP-NILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus        88 i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~-~~L~~~~~~~~~VDGILfDL  166 (413)
                      .+||.-+|.||=+..+...- --.|+|+|+|+.|.+..+.+   ++...+++++-.++. +.+....+....+|.|+.+.
T Consensus         4 ~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N---~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp   79 (376)
T 3g7u_A            4 NVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAIN---FPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP   79 (376)
T ss_dssp             EEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHH---CTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred             eEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHh---CCCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence            58999999999999987762 23567999999999877665   345667777765542 12211111224699999776


Q ss_pred             CC
Q psy7191         167 GI  168 (413)
Q Consensus       167 Gv  168 (413)
                      .|
T Consensus        80 PC   81 (376)
T 3g7u_A           80 PC   81 (376)
T ss_dssp             CC
T ss_pred             CC
Confidence            66

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=87.82  E-value=1.1  Score=43.94  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=52.5

Q ss_pred             CEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH-HHHHhcCCCCCCccEEEE
Q psy7191          87 VTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP-NILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~-~~L~~~~~~~~~VDGILf  164 (413)
                      -.++|.-+|.||-+..+...-- --.|+|+|+|+.|++..+.+.   +...+++++-.++. ..+..     ..+|.++.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~---~~~~~~~~Di~~~~~~~~~~-----~~~D~l~~   74 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDR-----LSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHH-----HCCSEEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc---cccccccCCHHHccHhHcCc-----CCcCEEEE
Confidence            3689999999999999987631 136899999999999887764   33445666655543 22322     14899998


Q ss_pred             cCCCCc
Q psy7191         165 DVGISD  170 (413)
Q Consensus       165 DLGvSS  170 (413)
                      +..|-.
T Consensus        75 gpPCq~   80 (343)
T 1g55_A           75 SPPCQP   80 (343)
T ss_dssp             CCC---
T ss_pred             cCCCcc
Confidence            887733

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=87.25  E-value=1.3  Score=41.25  Aligned_cols=101  Identities=12%  Similarity=0.057  Sum_probs=60.5

Q ss_pred             ccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEec
Q psy7191          64 IYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYG  140 (413)
Q Consensus        64 ~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~  140 (413)
                      ..-+|+|.|-....-.|.    ++++| .|=|+||=-.++.+.+  .+.+|+.+|++++.++.+.+.+... .++.++..
T Consensus         8 ~~~~~~~~m~~~~~~~l~----gk~~l-VTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~   82 (271)
T 4ibo_A            8 SGLVPRGSMSNQIIFDLG----GRTAL-VTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAF   82 (271)
T ss_dssp             ----------CCGGGCCT----TCEEE-ETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCC
T ss_pred             CCCCCcccCccccccCCC----CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            445677777655433332    44433 6888888888888776  3579999999999888765544333 38999999


Q ss_pred             CCCChHHH---HHhcCCCCCCccEEEEcCCCC
Q psy7191         141 KFSDLPNI---LKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       141 nFs~l~~~---L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +.++.+.+   +++..-..+.+|.++-+-|++
T Consensus        83 Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  114 (271)
T 4ibo_A           83 DVTSESEIIEAFARLDEQGIDVDILVNNAGIQ  114 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence            98876543   222100123699999999974

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=87.17  E-value=0.6  Score=41.56  Aligned_cols=40  Identities=23%  Similarity=0.042  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhc
Q psy7191         311 NELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGN  350 (413)
Q Consensus       311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~  350 (413)
                      ..++.+|..+..+|+|||++++-.|.+-+..-+.+.++..
T Consensus       116 ~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~  155 (191)
T 3dou_A          116 QIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN  155 (191)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh
Confidence            3456788999999999999999999988876677777653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=86.36  E-value=0.16  Score=49.28  Aligned_cols=80  Identities=11%  Similarity=0.021  Sum_probs=51.5

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHh--cC--CCEEEEEeC--CHHHHHHHHhhhcCCC-C-eEEEec-CCC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILEN--IG--NVKVICLDR--DKESFEKAKTLAANDP-R-LVPVYG-KFS  143 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~--~p--~g~Via~Dr--D~~Al~~Ak~ll~~~~-r-v~~i~~-nFs  143 (413)
                      |.|+-+--. ++|++.+||+-++.||-|+...+.  ..  .|.++|+|.  +|...      . ..+ + +.++++ +|.
T Consensus        62 L~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~-~~Gv~~i~~~~G~Df~  133 (269)
T 2px2_A           62 LRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------Q-SYGWNIVTMKSGVDVF  133 (269)
T ss_dssp             HHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------C-STTGGGEEEECSCCGG
T ss_pred             HHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------c-CCCceEEEeeccCCcc
Confidence            455555544 789999999999999999999987  42  367788883  22110      0 011 2 244446 776


Q ss_pred             ChHHHHHhcCCCCCCccEEEEcCCCC
Q psy7191         144 DLPNILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       144 ~l~~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +++         ..++|.||=|.+-|
T Consensus       134 ~~~---------~~~~DvVLSDMAPn  150 (269)
T 2px2_A          134 YKP---------SEISDTLLCDIGES  150 (269)
T ss_dssp             GSC---------CCCCSEEEECCCCC
T ss_pred             CCC---------CCCCCEEEeCCCCC
Confidence            521         23699999776653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=86.23  E-value=0.85  Score=44.11  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhc-----CCCEEEEEeCCH--------------H------------HHHHHHhhhcCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENI-----GNVKVICLDRDK--------------E------------SFEKAKTLAAND  132 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~-----p~g~Via~DrD~--------------~------------Al~~Ak~ll~~~  132 (413)
                      ...+.+|.+-...|+-+..+.+.+     ++++|++||...              .            .++.+++.++.+
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            345799999999998777765544     478999999531              1            245566655432


Q ss_pred             ----CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         133 ----PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       133 ----~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                          ++++++.++|.   +.|.+.  +...+|.|.+|...
T Consensus       185 gl~~~~I~li~Gda~---etL~~~--~~~~~d~vfIDaD~  219 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFK---DTLPTA--PIDTLAVLRMDGDL  219 (282)
T ss_dssp             TCCSTTEEEEESCHH---HHSTTC--CCCCEEEEEECCCS
T ss_pred             CCCcCceEEEEeCHH---HHHhhC--CCCCEEEEEEcCCc
Confidence                48999999994   344443  23479999999764

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=85.41  E-value=0.58  Score=44.35  Aligned_cols=79  Identities=13%  Similarity=0.227  Sum_probs=51.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHh-------cCC-----CEEEEEeCCH---HHHH-----------HHHhhhcCC-----
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILEN-------IGN-----VKVICLDRDK---ESFE-----------KAKTLAAND-----  132 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~-------~p~-----g~Via~DrD~---~Al~-----------~Ak~ll~~~-----  132 (413)
                      .+...+++..||.|-.+.++++.       .|+     .++++++.+|   +.+.           .|+++++.+     
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            35579999999999988888775       464     5899999998   4333           345544331     


Q ss_pred             ---------C--CeEEEecCCCChHHHHHhcCC-CCCCccEEEEc
Q psy7191         133 ---------P--RLVPVYGKFSDLPNILKNMNN-NFNSIDGIIMD  165 (413)
Q Consensus       133 ---------~--rv~~i~~nFs~l~~~L~~~~~-~~~~VDGILfD  165 (413)
                               +  +++++.++..   +.|....- ....||.|++|
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~---~~l~~~~~~~~~~~D~iflD  180 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDIN---ELISQLDDSLNQKVDAWFLD  180 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHH---HHGGGSCGGGTTCEEEEEEC
T ss_pred             chhheeccCCceEEEEEECcHH---HHHhhcccccCCeEEEEEEC
Confidence                     1  4556666554   34544310 00259999988

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=83.88  E-value=0.46  Score=46.38  Aligned_cols=95  Identities=12%  Similarity=0.065  Sum_probs=68.0

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecC-CCCh
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGK-FSDL  145 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~n-Fs~l  145 (413)
                      ...|-.+...++.+.. -+++.++|+=.|.|.=....|+  +..+++.+|.++++++.-+++++...++++++.+ |..+
T Consensus        74 ~~~p~~l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L  150 (283)
T 2oo3_A           74 ENLPSLFLEYISVIKQ-INLNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKL  150 (283)
T ss_dssp             GGSCGGGHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHH
T ss_pred             cCCcHHHHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHH
Confidence            3467776776666642 2345679999999988877776  3469999999999999888877654589999887 5444


Q ss_pred             HHHHHhcCCCCCCccEEEEcCCC
Q psy7191         146 PNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ...+..    ..++|.|++|=.|
T Consensus       151 ~~l~~~----~~~fdLVfiDPPY  169 (283)
T 2oo3_A          151 NALLPP----PEKRGLIFIDPSY  169 (283)
T ss_dssp             HHHCSC----TTSCEEEEECCCC
T ss_pred             HHhcCC----CCCccEEEECCCC
Confidence            433321    2368999976555

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=83.45  E-value=4  Score=36.65  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=54.7

Q ss_pred             EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCccEEEEc
Q psy7191          92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~VDGILfD  165 (413)
                      .|=|+||=-.++.+.+  .+.+|+++|+++...+...+.+...+ ++.++..+.++.+.   ++++..-..+.+|+++.+
T Consensus        10 ITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~   89 (247)
T 3lyl_A           10 VTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNN   89 (247)
T ss_dssp             ESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEEC
T ss_pred             EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5777787777777765  35799999999988877655444333 89999999988653   333221112369999999


Q ss_pred             CCCC
Q psy7191         166 VGIS  169 (413)
Q Consensus       166 LGvS  169 (413)
                      .|+.
T Consensus        90 Ag~~   93 (247)
T 3lyl_A           90 AGIT   93 (247)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=83.11  E-value=7  Score=35.63  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=56.4

Q ss_pred             EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191          92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD  165 (413)
                      .|=|+||=-.++.+.+  .+.+|+.+|++++.++.+.+.+...+ ++.++..+.++.+.+   +++..-..+.+|.++-+
T Consensus        11 VTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~n   90 (257)
T 3imf_A           11 ITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINN   90 (257)
T ss_dssp             ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6888888888887776  35799999999999888766655544 899999999885433   32210001368999999


Q ss_pred             CCCC
Q psy7191         166 VGIS  169 (413)
Q Consensus       166 LGvS  169 (413)
                      -|+.
T Consensus        91 Ag~~   94 (257)
T 3imf_A           91 AAGN   94 (257)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=82.98  E-value=1.2  Score=38.18  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191         312 ELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG  349 (413)
Q Consensus       312 ~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~  349 (413)
                      .++.+|..+..+|+|||++++.+|+.-+..-+...++.
T Consensus       123 ~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  160 (196)
T 2nyu_A          123 LCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTE  160 (196)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHH
Confidence            34678999999999999999998887654444444443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=82.91  E-value=1.2  Score=37.48  Aligned_cols=39  Identities=13%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhh
Q psy7191         311 NELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTG  349 (413)
Q Consensus       311 ~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~  349 (413)
                      ..+..+|..+..+|+|||++++.+++.-..+-+++.+++
T Consensus       134 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~  172 (194)
T 1dus_A          134 EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD  172 (194)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHH
Confidence            456788999999999999999999998666656666655

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=82.48  E-value=1.1  Score=38.41  Aligned_cols=40  Identities=18%  Similarity=-0.045  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhhcccCCeEEEEEccch-----hhHHHHHHHhhc
Q psy7191         311 NELNYAMIIAEKYLKPEGLLLTKCNSIV-----EDKIVKRHLTGN  350 (413)
Q Consensus       311 ~~L~~~L~~a~~~L~pgGrl~VISFHSL-----EDRiVK~~f~~~  350 (413)
                      +....+|..+..+|+|||+++++.|+.-     |-..+.+++...
T Consensus       112 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l  156 (185)
T 3mti_A          112 HTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL  156 (185)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence            3445678889999999999999999743     334556666553

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=80.73  E-value=13  Score=33.90  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=56.8

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~V  159 (413)
                      +.++| .|=|+||=-.++.+.+  .+.+|+.+|++++.++...+.+.... ++.++..+.++.+.+   +++.--..+.+
T Consensus         7 ~k~vl-VTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            7 GKVCL-VTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            34444 7888888888888776  35799999999988877554443333 788899999886543   22110001368


Q ss_pred             cEEEEcCCCC
Q psy7191         160 DGIIMDVGIS  169 (413)
Q Consensus       160 DGILfDLGvS  169 (413)
                      |.++.+.|+.
T Consensus        86 d~lv~nAg~~   95 (262)
T 1zem_A           86 DFLFNNAGYQ   95 (262)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999999874

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=80.71  E-value=6.2  Score=38.10  Aligned_cols=80  Identities=10%  Similarity=0.079  Sum_probs=54.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCE-EEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH-HHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVK-VICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP-NILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~-Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~-~~L~~~~~~~~~VDG  161 (413)
                      ...-.+||.-+|.||=+..+...--... |+++|+|+.|.+.-+.+   ++...++.++-.++. +.+.+.    ..+|.
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N---~~~~~~~~~DI~~i~~~~i~~~----~~~Dl   86 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR---HQGKIMYVGDVRSVTQKHIQEW----GPFDL   86 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH---TTTCEEEECCGGGCCHHHHHHT----CCCSE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh---CCCCceeCCChHHccHHHhccc----CCcCE
Confidence            3455899999999999999876522333 79999999999875554   343455666655543 223332    25899


Q ss_pred             EEEcCCCCc
Q psy7191         162 IIMDVGISD  170 (413)
Q Consensus       162 ILfDLGvSS  170 (413)
                      ++....|-.
T Consensus        87 l~ggpPCQ~   95 (295)
T 2qrv_A           87 VIGGSPCND   95 (295)
T ss_dssp             EEECCCCGG
T ss_pred             EEecCCCcc
Confidence            997777733

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=80.62  E-value=5.7  Score=38.74  Aligned_cols=74  Identities=15%  Similarity=0.065  Sum_probs=51.2

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEEc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfD  165 (413)
                      +-.++|.-+|.||-+..+... .--.|+++|+|+.|++..+.+....   .     ..++.++... .+  ..+|.|+.+
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~~---~-----~~Di~~~~~~-~~--~~~D~l~~g   78 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK---P-----EGDITQVNEK-TI--PDHDILCAG   78 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC---C-----BSCGGGSCGG-GS--CCCSEEEEE
T ss_pred             CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCCC---C-----cCCHHHcCHh-hC--CCCCEEEEC
Confidence            358999999999999999865 2235789999999999877765321   1     3444443322 12  258999988


Q ss_pred             CCCCcc
Q psy7191         166 VGISDS  171 (413)
Q Consensus       166 LGvSS~  171 (413)
                      ..|-.+
T Consensus        79 pPCQ~f   84 (327)
T 2c7p_A           79 FPCQAF   84 (327)
T ss_dssp             CCCTTT
T ss_pred             CCCCCc
Confidence            777433

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=80.10  E-value=10  Score=35.06  Aligned_cols=78  Identities=10%  Similarity=0.063  Sum_probs=54.8

Q ss_pred             EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191          92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD  165 (413)
                      .|=|+||=-.++.+.+  .+.+|+++|++++.++.+.+.+.... ++.++..+.++.+.+   +++.--..+.+|.++-+
T Consensus        29 VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~n  108 (279)
T 3sju_A           29 VTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNS  108 (279)
T ss_dssp             EESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCSCCEEEEC
T ss_pred             EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence            6778888777777776  35799999999998887655444433 899999999886543   22210001368999999


Q ss_pred             CCCC
Q psy7191         166 VGIS  169 (413)
Q Consensus       166 LGvS  169 (413)
                      .|+.
T Consensus       109 Ag~~  112 (279)
T 3sju_A          109 AGRN  112 (279)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	413
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	2e-14
d1wg8a2	182	c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf	4e-11
d1wg8a1	98	a.60.13.1 (A:109-206) Putative methyltransferase T	3e-08
d1m6ya1	101	a.60.13.1 (A:115-215) Putative methyltransferase T	2e-07

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 69.0 bits (168), Expect = 2e-14
 Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 5/169 (2%)

Query: 65  YNKK-YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFE 123
           Y+++  P   +     L    +   ++D T G+G H+R ILE+    ++I +D D E   
Sbjct: 3   YSQRHIPVMVREVIEFLKPEDEK-IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLR 61

Query: 124 -KAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPD 182
              + L     R+      + +   +LK +      +DGI+MD+G+S  Q         +
Sbjct: 62  IAEEKLKEFSDRVSLFKVSYREADFLLKTLG--IEKVDGILMDLGVSTYQLKGENRELEN 119

Query: 183 SNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAII 231
               L          G  V+ +   +    + +T+   K+ R +    +
Sbjct: 120 LKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKLRILTEKPV 168

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

 Score = 59.4 bits (143), Expect = 4e-11
 Identities = 36/154 (23%), Positives = 56/154 (36%), Gaps = 7/154 (4%)

Query: 78  SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVP 137
             L         +D T G   H R ILE  G  +VI LD+D E+  +AK    + P L  
Sbjct: 12  DLLAVRPGG-VYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKG--LHLPGLTV 66

Query: 138 VYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQANSTRGFKPDSNSLLDMRMSQEGIT 197
           V G F  L   L  +      +DGI+ D+G+S    +            L+         
Sbjct: 67  VQGNFRHLKRHLAALG--VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG 124

Query: 198 GYQVLSAIDEVSLAKILKTYGEEKRSRQIARAII 231
           G  V+ A   +    + +   E        + ++
Sbjct: 125 GRLVVIAFHSLEDRVVKRFLRESGLKVLTKKPLV 158

>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]} Length = 98

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermus thermophilus [TaxId: 274]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 33/131 (25%)

Query: 177 RGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYT 236
           RGF       LDMRM  EG T  +V++ +   +LA++L+  GEE ++ +IARAI+  R  
Sbjct: 1   RGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAR-- 58

Query: 237 FKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQ 296
                                         E      T  +     +    +    H A+
Sbjct: 59  ------------------------------EKAPIETTTQLAEIVRKAVGFRRAG-HPAR 87

Query: 297 KVYNGLRRFVN 307
           K +  LR +VN
Sbjct: 88  KTFQALRIYVN 98

>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]} Length = 101

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 177 RGFKPDSNSLLDMRMSQE-GITGYQVLSAIDEVSLAKILKTYGEEKR-SRQIARAIIETR 234
           RGF  +    LDMRM  E  +T  +VL+ + E  LA+I+  YGEEKR +R+IAR I+E R
Sbjct: 2   RGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR 61

Query: 235 YTFKKLERTRDLNELVASVSRPSQTWKRACRT 266
                L+  + + E + S     +    A +T
Sbjct: 62  PLNTTLDLVKAVREALPSYEIRRRKRHFATKT 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	413
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	100.0
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	100.0
d1wg8a1	98	Putative methyltransferase TM0872, insert domain {	100.0
d1m6ya1	101	Putative methyltransferase TM0872, insert domain {	100.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.52
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.37
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.36
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.33
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.33
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.26
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.26
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.25
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.25
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.24
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.15
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.14
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.12
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.09
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.09
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.05
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.03
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.0
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.98
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.95
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.93
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.88
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.87
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	97.85
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.84
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	97.84
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.83
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	97.8
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	97.79
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.79
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.77
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.74
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.69
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.69
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.68
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.65
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	97.65
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.64
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	97.64
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.62
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.61
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.54
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.52
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.51
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	97.47
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.39
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	97.38
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.33
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.25
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.23
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.23
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.23
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.22
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.21
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.17
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	97.11
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.06
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.06
d2h00a1	250	Methyltransferase 10 domain containing protein MET	96.97
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	96.93
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.93
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.9
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.89
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.87
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.55
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	96.39
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.3
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.29
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.22
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	96.17
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.11
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.08
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.05
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.78
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.69
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	95.51
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.51
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	95.26
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.22
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.06
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	94.99
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	94.9
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	94.4
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	94.31
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	93.47
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	93.45
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	93.37
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	93.2
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	93.19
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	92.92
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	92.44
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	92.41
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	91.74
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	91.22
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	89.95
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.32
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	87.62
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.47
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	86.18
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	86.02
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	85.6
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.15
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	84.14
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.87
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	83.32
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	82.7
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	82.37
d2edua1	91	KIF22, C-terminal domain {Human (Homo sapiens) [Ta	80.06

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.4e-48  Score=355.96  Aligned_cols=175  Identities=28%  Similarity=0.447  Sum_probs=159.5

Q ss_pred             CCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCC
Q psy7191          66 NKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSD  144 (413)
Q Consensus        66 ~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~  144 (413)
                      .+|+|||++|++++|. ++++++|||||||+||||.+||+++|+++|||+|+|++|++.|+++++.|+ |+++++++|++
T Consensus         5 ~~H~pVll~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~   83 (192)
T d1m6ya2           5 QRHIPVMVREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   83 (192)
T ss_dssp             SSCCCTTHHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             CCCCchHHHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhh
Confidence            4699999999999997 999999999999999999999999999999999999999999999988876 99999999999


Q ss_pred             hHHHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchH
Q psy7191         145 LPNILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRS  223 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a  223 (413)
                      ++.++...++  ++||||||||||||+||| +                                                
T Consensus        84 ~~~~~~~~~~--~~vdgIl~DlGvSs~Qld~~------------------------------------------------  113 (192)
T d1m6ya2          84 ADFLLKTLGI--EKVDGILMDLGVSTYQLKGE------------------------------------------------  113 (192)
T ss_dssp             HHHHHHHTTC--SCEEEEEEECSCCHHHHHTS------------------------------------------------
T ss_pred             HHHHHHHcCC--CCcceeeeccchhHhhhhhh------------------------------------------------
Confidence            9999998876  479999999999999998 5                                                


Q ss_pred             HHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHH
Q psy7191         224 RQIARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLR  303 (413)
Q Consensus       224 ~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALR  303 (413)
                                                                                                      
T Consensus       114 --------------------------------------------------------------------------------  113 (192)
T d1m6ya2         114 --------------------------------------------------------------------------------  113 (192)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCCc
Q psy7191         304 RFVNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPW  383 (413)
Q Consensus       304 I~VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (413)
                         |.|+..++.+|..+.++|+|||+++||||||+|||+||++|++.                              ..|
T Consensus       114 ---~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~------------------------------~~~  160 (192)
T d1m6ya2         114 ---NRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNS------------------------------KKL  160 (192)
T ss_dssp             ---HTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHC------------------------------SSE
T ss_pred             ---hccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhc------------------------------ccc
Confidence               22566677778889999999999999999999999999999974                              235


Q ss_pred             eeecc--cCCCccce---------eeeeEEee
Q psy7191         384 TILDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       384 ~~itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                      +++++  |.||++||         |||||+|+
T Consensus       161 ~~i~~k~I~ps~~Ei~~NpRsrSaklr~~~k~  192 (192)
T d1m6ya2         161 RILTEKPVRPSEEEIRENPRARSGRLRAAERI  192 (192)
T ss_dssp             EESCSSCBCCCHHHHHHCGGGTTCEEEEEEEC
T ss_pred             ccCCCCCcCcCHHHHHhCcchHhhhhheeEeC
Confidence            66765  99999999         99999986

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.1e-45  Score=337.74  Aligned_cols=169  Identities=34%  Similarity=0.492  Sum_probs=151.6

Q ss_pred             CccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChH
Q psy7191          67 KKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLP  146 (413)
Q Consensus        67 ~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~  146 (413)
                      .|+|||++|+++.|. +++|++|||||+|+||||.+||++  +++|||||+||+|+++|+++.  ++++.+++++|+++.
T Consensus         1 tH~pVll~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~   75 (182)
T d1wg8a2           1 THVPVLYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLK   75 (182)
T ss_dssp             CCCCTTHHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHH
T ss_pred             CccchHHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHH
Confidence            599999999999997 999999999999999999999996  689999999999999998763  459999999999999


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCCccCcc-CCCCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHH
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGISDSQAN-STRGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQ  225 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvSS~Qld-~~RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~r  225 (413)
                      +++...++  +.||||||||||||+||| ++                                                 
T Consensus        76 ~~l~~~~~--~~vdgIl~DLGvSs~qld~~~-------------------------------------------------  104 (182)
T d1wg8a2          76 RHLAALGV--ERVDGILADLGVSSFHLDDPS-------------------------------------------------  104 (182)
T ss_dssp             HHHHHTTC--SCEEEEEEECSCCHHHHHCGG-------------------------------------------------
T ss_pred             HHHHHcCC--CccCEEEEEccCCHHHhhcch-------------------------------------------------
Confidence            99998876  479999999999999999 62                                                 


Q ss_pred             HHHHHHHHHccCCCCCCHHHHHHHHHhhcCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHHHH
Q psy7191         226 IARAIIETRYTFKKLERTRDLNELVASVSRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRF  305 (413)
Q Consensus       226 IA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALRI~  305 (413)
                                                                                                      
T Consensus       105 --------------------------------------------------------------------------------  104 (182)
T d1wg8a2         105 --------------------------------------------------------------------------------  104 (182)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HhhhHHHHHHHHHHHHhhcccCCeEEEEEccchhhHHHHHHHhhcccccccccchhhhhcccCcCCCCcCCcCCCCCcee
Q psy7191         306 VNNELNELNYAMIIAEKYLKPEGLLLTKCNSIVEDKIVKRHLTGNVIEHCANDLALKFVNHNLTVNPLDMSSLTSSPWTI  385 (413)
Q Consensus       306 VN~EL~~L~~~L~~a~~~L~pgGrl~VISFHSLEDRiVK~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (413)
                        +|++.+...|..+.++|+|||+++||||||+|||+||++|++.                               .|++
T Consensus       105 --re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~-------------------------------~~k~  151 (182)
T d1wg8a2         105 --DELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRES-------------------------------GLKV  151 (182)
T ss_dssp             --THHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHH-------------------------------CSEE
T ss_pred             --HHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhc-------------------------------ccee
Confidence              1455667788899999999999999999999999999999973                               1456


Q ss_pred             ecc--cCCCccce---------eeeeEEee
Q psy7191         386 LDK--IIPSDSDL---------KLRVAMKK  404 (413)
Q Consensus       386 itk--i~Ps~eEi---------KLRv~~k~  404 (413)
                      +++  |+||++||         |||+++|.
T Consensus       152 i~kK~i~~s~~Ei~~Nprsrsa~lr~~~k~  181 (182)
T d1wg8a2         152 LTKKPLVPSEKEAAQNPRARSAKLRAAEKE  181 (182)
T ss_dssp             SCSSCBCCCHHHHHHCGGGGGCEEEEEECC
T ss_pred             ccCCCcCcCHHHHhhCcchHhhhheEEEEe
Confidence            655  99999999         99999985

>d1wg8a1 a.60.13.1 (A:109-206) Putative methyltransferase TM0872, insert domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.3e-42  Score=287.58  Aligned_cols=98  Identities=37%  Similarity=0.537  Sum_probs=93.6

Q ss_pred             CCccCCCCCCCcccCCCCCCCHHHHHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHHHHhhcCC
Q psy7191         177 RGFKPDSNSLLDMRMSQEGITGYQVLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNELVASVSRP  256 (413)
Q Consensus       177 RGFSf~~dgPLDMRMd~~~~tA~~vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~~~~  256 (413)
                      |||||+.|||||||||++++||++|||+|++++|++||++||||++|++||++||++| +.+||+||.||+++|+.++|.
T Consensus         1 RGFSf~~~gpLDMRmd~~~~tA~~iln~~~~~eL~~if~~yGee~~a~~iA~~Iv~~R-~~~~i~tT~dL~~ii~~~~~~   79 (98)
T d1wg8a1           1 RGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIARAIVAAR-EKAPIETTTQLAEIVRKAVGF   79 (98)
T ss_dssp             GCCCSSSCCBSCCCSSSCSCCHHHHHHHSCHHHHHHHHHHHHCCTTHHHHHHHHHHHH-HHSCCCBHHHHHHHHHHHHCC
T ss_pred             CCCCcCCCCCCCCCCCCCCCCHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHhccchhHHHHHHHHhhcCC
Confidence            8999999999999999988999999999999999999999999999999999999999 789999999999999999875


Q ss_pred             CccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHHHHHh
Q psy7191         257 SQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFVN  307 (413)
Q Consensus       257 ~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALRI~VN  307 (413)
                      .                                +++||||||||||||+||
T Consensus        80 ~--------------------------------~~~~~atrvFQALRI~VN   98 (98)
T d1wg8a1          80 R--------------------------------RAGHPARKTFQALRIYVN   98 (98)
T ss_dssp             C--------------------------------SSSCTTHHHHHHHHHHHT
T ss_pred             C--------------------------------CCCChHHHHHHHHHheeC
Confidence            4                                345999999999999999

>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Putative methyltransferase TM0872, insert domain
family: Putative methyltransferase TM0872, insert domain
domain: Putative methyltransferase TM0872, insert domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.2e-39  Score=273.28  Aligned_cols=99  Identities=38%  Similarity=0.568  Sum_probs=90.9

Q ss_pred             CCCccCCCCCCCcccCCC-CCCCHHHHHhcCCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHccCCCCCCHHHHHHHHHhh
Q psy7191         176 TRGFKPDSNSLLDMRMSQ-EGITGYQVLSAIDEVSLAKILKTYGEEK-RSRQIARAIIETRYTFKKLERTRDLNELVASV  253 (413)
Q Consensus       176 ~RGFSf~~dgPLDMRMd~-~~~tA~~vlN~~~e~eL~~I~~~YGEE~-~a~rIA~aIv~~R~~~~~i~TT~eL~~iI~~~  253 (413)
                      +|||||+.|||||||||+ +++||+||||+|++++|.+||++||||+ +|++||++|++.|    ||+||.||+++|+.+
T Consensus         1 dRGFSf~~~gpLDMRmd~~~~~sA~~~ln~~~~~~L~~Il~~yGee~~~a~~ia~~Iv~~R----~i~tt~~L~~~i~~~   76 (101)
T d1m6ya1           1 NRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENR----PLNTTLDLVKAVREA   76 (101)
T ss_dssp             CSCSSSSSCCBSCCCSSTTSSCCHHHHHHHSCHHHHHHHHHHTTCCTTTHHHHHHHHHHTC----SCCBHHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCCCCCCCcCHHHHHhhhhHHHHHHHHHHhccchhhhHHHHHHHHHhc----ccccHHHHHHHHHHH
Confidence            699999999999999999 8999999999999999999999999997 5999999999988    899999999999999


Q ss_pred             cCCCccchhhhchhhhhhhhhhcccccccccCCCCCCCCChhHHHHHHHHHHH
Q psy7191         254 SRPSQTWKRACRTESLQWIATASVVGTEVRVDPRKHGSEHVAQKVYNGLRRFV  306 (413)
Q Consensus       254 ~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~hpatr~FQALRI~V  306 (413)
                      +|...     .++                       .++||||||||||||+|
T Consensus        77 ~~~~~-----~~~-----------------------~~~h~atr~FQALRI~V  101 (101)
T d1m6ya1          77 LPSYE-----IRR-----------------------RKRHFATKTFQAIRIYV  101 (101)
T ss_dssp             SCHHH-----HHH-----------------------CSSCTTHHHHHHHHHHH
T ss_pred             cchhh-----hcC-----------------------CCCChhhHHhhhheeeC
Confidence            98642     011                       56799999999999998

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.9e-08  Score=95.62  Aligned_cols=91  Identities=20%  Similarity=0.205  Sum_probs=73.8

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhc
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~  152 (413)
                      ++..|. +++|+.++|+|.|.||+|.+|++.. +.++|+|+|+++..++..+++++.++  ++.+.+.++..+...... 
T Consensus        86 ~~~~L~-~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~-  163 (293)
T d2b9ea1          86 PAMLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPR-  163 (293)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGG-
T ss_pred             cccccC-CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccc-
Confidence            455665 8999999999999999999999887 46999999999999999888777654  788899888766433222 


Q ss_pred             CCCCCCccEEEEcCCCCcc
Q psy7191         153 NNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       153 ~~~~~~VDGILfDLGvSS~  171 (413)
                         .+.||.||+|-.||+.
T Consensus       164 ---~~~fD~VL~DaPCSg~  179 (293)
T d2b9ea1         164 ---YHEVHYILLDPSCSGS  179 (293)
T ss_dssp             ---GTTEEEEEECCCCCC-
T ss_pred             ---cceeeEEeecCcccch
Confidence               2469999999999864

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=9.5e-08  Score=90.26  Aligned_cols=89  Identities=17%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC--CeEEEecCCCChHHHHHhcCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP--RLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~--rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      +..|. +++|..++|+|.|.||.|.+|++...+++|+|+|+++..+...+++++...  .+.....+..... ...    
T Consensus        95 ~~~L~-~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~-~~~----  168 (284)
T d1sqga2          95 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-WCG----  168 (284)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH-HHT----
T ss_pred             ccccC-ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccch-hcc----
Confidence            33454 899999999999999999999998888999999999999999887776654  4444544444332 221    


Q ss_pred             CCCCccEEEEcCCCCccC
Q psy7191         155 NFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS~Q  172 (413)
                       ...+|.||+|..||+.=
T Consensus       169 -~~~fd~IL~DaPCSg~G  185 (284)
T d1sqga2         169 -EQQFDRILLDAPCSATG  185 (284)
T ss_dssp             -TCCEEEEEEECCCCCGG
T ss_pred             -cccccEEEEeccccccC
Confidence             23699999999998754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.37  E-value=2.2e-07  Score=89.01  Aligned_cols=85  Identities=13%  Similarity=0.192  Sum_probs=69.0

Q ss_pred             ccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCC
Q psy7191          79 GLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        79 ~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      .|. +++|..++|+|.|.||.|.+|++... .+.|+|+|+++.-+...+++++..  .++.+++.++..++..       
T Consensus       111 ~l~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~-------  182 (313)
T d1ixka_         111 ALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL-------  182 (313)
T ss_dssp             HHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG-------
T ss_pred             ccc-CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccc-------
Confidence            344 89999999999999999999999885 699999999999998887766543  3787788776655321       


Q ss_pred             CCCccEEEEcCCCCcc
Q psy7191         156 FNSIDGIIMDVGISDS  171 (413)
Q Consensus       156 ~~~VDGILfDLGvSS~  171 (413)
                      ...+|.||+|..||+.
T Consensus       183 ~~~fD~ILvDaPCSg~  198 (313)
T d1ixka_         183 NVEFDKILLDAPCTGS  198 (313)
T ss_dssp             CCCEEEEEEECCTTST
T ss_pred             cccccEEEEccccccC
Confidence            2369999999999864

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5e-07  Score=87.21  Aligned_cols=105  Identities=15%  Similarity=0.196  Sum_probs=76.2

Q ss_pred             HHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          53 NLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        53 ~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      +..+++|-..=.|    |==..-++..|. ++||..++|+.+|.|+.|.+|+... |+|+||++|+++++++.|+++++.
T Consensus        71 ~~~~~~r~tqiiy----pkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~  145 (324)
T d2b25a1          71 YVVLMKRGTAITF----PKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH  145 (324)
T ss_dssp             HHHHSCCSSCCCC----HHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             HhhccCCCCcccc----cccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHH
Confidence            3345555444333    334456677786 9999999999999999999999886 789999999999999999876532


Q ss_pred             ------------C-CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         132 ------------D-PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       132 ------------~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                                  + .++.++++++.+...-+.     ...+|+|++|++
T Consensus       146 ~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~-----~~~fD~V~LD~p  189 (324)
T d2b25a1         146 WRDSWKLSHVEEWPDNVDFIHKDISGATEDIK-----SLTFDAVALDML  189 (324)
T ss_dssp             HHHHHTTTCSSCCCCCEEEEESCTTCCC------------EEEEEECSS
T ss_pred             hhhhhhhhhhhccccceeEEecchhhcccccC-----CCCcceEeecCc
Confidence                        2 389999999876543332     246999998763

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.33  E-value=4.3e-07  Score=85.45  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=75.5

Q ss_pred             HhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC--
Q psy7191          55 ASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN--  131 (413)
Q Consensus        55 ~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~--  131 (413)
                      .+++|-..=.|    |==..-++..|. ++||..++|+-+|.|..|.+|+... |+|+|+++|++++.++.|+++++.  
T Consensus        71 ~~~~r~tqiiy----pkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~  145 (264)
T d1i9ga_          71 MSMPRGPQVIY----PKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY  145 (264)
T ss_dssp             TTSCSCSCCCC----HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             hhccCCccccc----hHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc
Confidence            34555443333    223345566676 9999999999999999999999986 899999999999999999886543  


Q ss_pred             ---CCCeEEEecCCCChHHHHHhcCCCCCCccEEEEcC
Q psy7191         132 ---DPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDV  166 (413)
Q Consensus       132 ---~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDL  166 (413)
                         ..++.++++++.+.       +++.+.+|+|++|+
T Consensus       146 ~~~~~nv~~~~~d~~~~-------~~~~~~fDaV~ldl  176 (264)
T d1i9ga_         146 GQPPDNWRLVVSDLADS-------ELPDGSVDRAVLDM  176 (264)
T ss_dssp             TSCCTTEEEECSCGGGC-------CCCTTCEEEEEEES
T ss_pred             cCCCceEEEEecccccc-------cccCCCcceEEEec
Confidence               23899998876542       33345799999774

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=8.8e-07  Score=82.54  Aligned_cols=100  Identities=16%  Similarity=0.247  Sum_probs=68.2

Q ss_pred             HhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC-
Q psy7191          55 ASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND-  132 (413)
Q Consensus        55 ~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~-  132 (413)
                      .+++|-..=.|-+-.    .-++..+. ++||..++|+-+|.|+-|.+|+... |+++|+++|+++++++.|+++++.+ 
T Consensus        60 ~~~~r~~qiiypkD~----~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~  134 (250)
T d1yb2a1          60 RVIRRNTQIISEIDA----SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY  134 (250)
T ss_dssp             HHC----------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS
T ss_pred             hhCCCCCcccCHHHH----HHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc
Confidence            344554444443333    33466675 9999999999999999999999886 7899999999999999999987654 


Q ss_pred             --CCeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         133 --PRLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       133 --~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                        .++++.++++.+.   +     ....+|.|++|++
T Consensus       135 ~~~nv~~~~~Di~~~---~-----~~~~fD~V~ld~p  163 (250)
T d1yb2a1         135 DIGNVRTSRSDIADF---I-----SDQMYDAVIADIP  163 (250)
T ss_dssp             CCTTEEEECSCTTTC---C-----CSCCEEEEEECCS
T ss_pred             CCCceEEEEeeeecc---c-----ccceeeeeeecCC
Confidence              3899999987653   1     2346999998753

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.26  E-value=1.4e-06  Score=78.47  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=65.6

Q ss_pred             cCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          80 LNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        80 L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      |. ++||..++|..||+|+-+.+|.+..|+++|||+|++|.+++.++++.+..+++.++..+......+-..    ...+
T Consensus        52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~----~~~v  126 (209)
T d1nt2a_          52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI----VEKV  126 (209)
T ss_dssp             CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT----CCCE
T ss_pred             CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccc----cceE
Confidence            44 789999999999999999999888899999999999999999988766556899999888776543221    2346


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.++.|+
T Consensus       127 d~v~~~~  133 (209)
T d1nt2a_         127 DLIYQDI  133 (209)
T ss_dssp             EEEEECC
T ss_pred             EEEEecc
Confidence            6665444

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.26  E-value=5e-07  Score=78.99  Aligned_cols=80  Identities=15%  Similarity=0.185  Sum_probs=62.7

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhc
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~  152 (413)
                      ++..|. +.++++++|.-+|.|+.|.+++..  .++|+|+|+|+.+++.|+++.+.+   +++++++++..   +.+.. 
T Consensus        25 il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~---~~~~~-   97 (186)
T d1l3ia_          25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP---EALCK-   97 (186)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH---HHHTT-
T ss_pred             HHHhcC-CCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh---hcccc-
Confidence            344555 899999999999999999998765  368999999999999999876543   38999998753   33322 


Q ss_pred             CCCCCCccEEEEc
Q psy7191         153 NNNFNSIDGIIMD  165 (413)
Q Consensus       153 ~~~~~~VDGILfD  165 (413)
                         ...+|.|+++
T Consensus        98 ---~~~~D~v~~~  107 (186)
T d1l3ia_          98 ---IPDIDIAVVG  107 (186)
T ss_dssp             ---SCCEEEEEES
T ss_pred             ---cCCcCEEEEe
Confidence               2369999875

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=8.1e-07  Score=80.04  Aligned_cols=92  Identities=15%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~  146 (413)
                      |-|+..+++.|. +++|..++|..+|+|..|..|.+.. ++++|+++|+++++++.|+++++..  .++.+++++..+. 
T Consensus        61 P~~~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~-  138 (213)
T d1dl5a1          61 PSLMALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG-  138 (213)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC-
T ss_pred             chhhHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHc-
Confidence            667788899997 9999999999999998888777776 6799999999999999999877643  4888888765432 


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                        +..    .+.+|.|+.+.++.
T Consensus       139 --~~~----~~~fD~I~~~~~~~  155 (213)
T d1dl5a1         139 --VPE----FSPYDVIFVTVGVD  155 (213)
T ss_dssp             --CGG----GCCEEEEEECSBBS
T ss_pred             --ccc----ccchhhhhhhccHH
Confidence              111    23599999876653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=1.5e-06  Score=81.32  Aligned_cols=102  Identities=19%  Similarity=0.280  Sum_probs=74.9

Q ss_pred             HHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          53 NLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        53 ~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      +..+++|-..=.|    |=-..-++..|. ++||..++|+.+|.|+-|..|++.. |+|+|+|+|++++.++.|+++++.
T Consensus        76 ~~~~~~r~~qiiy----pkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~  150 (266)
T d1o54a_          76 EIMNMKRRTQIVY----PKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK  150 (266)
T ss_dssp             HHHTCCC-CCCCC----HHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHhhccCCccccc----hHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH
Confidence            3345555443333    334445677776 9999999999999999999999887 789999999999999999987765


Q ss_pred             CC---CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         132 DP---RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       132 ~~---rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ++   ++.+.+.+...        ++....+|.|++|++
T Consensus       151 ~g~~~~v~~~~~d~~~--------~~~~~~~D~V~~d~p  181 (266)
T d1o54a_         151 WGLIERVTIKVRDISE--------GFDEKDVDALFLDVP  181 (266)
T ss_dssp             TTCGGGEEEECCCGGG--------CCSCCSEEEEEECCS
T ss_pred             hccccCcEEEeccccc--------cccccceeeeEecCC
Confidence            42   77777766421        223346899987654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=1.8e-06  Score=79.10  Aligned_cols=87  Identities=10%  Similarity=0.171  Sum_probs=70.6

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ++.|. ++||..++|..+|.|+-+.++.+.. |+|+|||+|.++.+++.++++.+..+.+..+..+......+...    
T Consensus        66 l~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~----  140 (227)
T d1g8aa_          66 LKNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRAL----  140 (227)
T ss_dssp             CCCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTT----
T ss_pred             ccccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccccc----
Confidence            45555 8999999999999999999999887 78999999999999999998877666788888887776554322    


Q ss_pred             CCCccEEEEcCCC
Q psy7191         156 FNSIDGIIMDVGI  168 (413)
Q Consensus       156 ~~~VDGILfDLGv  168 (413)
                      ...+|.|+.|+-.
T Consensus       141 ~~~vD~i~~d~~~  153 (227)
T d1g8aa_         141 VPKVDVIFEDVAQ  153 (227)
T ss_dssp             CCCEEEEEECCCS
T ss_pred             ccceEEEEEEccc
Confidence            2469999987543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=4.3e-06  Score=75.12  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=68.9

Q ss_pred             cccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCCh
Q psy7191          69 YPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDL  145 (413)
Q Consensus        69 ~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l  145 (413)
                      .|-+++.+++.+. ++||..++|.-||.|+++..+++..+ ++|+|+|.++.+++.|+++....   ++++++++++.++
T Consensus        18 ~~~~~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            3445666777876 89999999999999999999887764 79999999999999998865433   3899999998764


Q ss_pred             HHHHHhcCCCCCCccEEEEc
Q psy7191         146 PNILKNMNNNFNSIDGIIMD  165 (413)
Q Consensus       146 ~~~L~~~~~~~~~VDGILfD  165 (413)
                         .     ..+++|.|+.=
T Consensus        96 ---~-----~~~~fD~v~~~  107 (245)
T d1nkva_          96 ---V-----ANEKCDVAACV  107 (245)
T ss_dssp             ---C-----CSSCEEEEEEE
T ss_pred             ---c-----ccCceeEEEEE
Confidence               1     12468888743

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.14  E-value=4.5e-06  Score=73.29  Aligned_cols=86  Identities=12%  Similarity=0.186  Sum_probs=69.1

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~  150 (413)
                      +.++++.+. ++++..++|.-||.|..|..+++..  .+|+|+|.++.+++.|+++.+.  ++++.+++++..+++    
T Consensus         4 ~~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~----   76 (231)
T d1vl5a_           4 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP----   76 (231)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC----
T ss_pred             HHHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccccccccccccccccccc----
Confidence            456778886 8999999999999999999998774  5899999999999999887543  458999999988763    


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                         ++.+.+|.|+.-..+
T Consensus        77 ---~~~~~fD~v~~~~~l   91 (231)
T d1vl5a_          77 ---FTDERFHIVTCRIAA   91 (231)
T ss_dssp             ---SCTTCEEEEEEESCG
T ss_pred             ---ccccccccccccccc
Confidence               223579999866544

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=3.2e-06  Score=80.70  Aligned_cols=85  Identities=13%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             hhhccCCccccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC---------
Q psy7191          61 SEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN---------  131 (413)
Q Consensus        61 ~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~---------  131 (413)
                      .++.|++=.|-+++++++.+. ++++.+++|.-+|.|+++..++...+..+++|+|+++.+++.|++..+.         
T Consensus       128 ~~~~~~e~~~~~~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g  206 (328)
T d1nw3a_         128 SPEVYGETSFDLVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG  206 (328)
T ss_dssp             STTCCCCCCHHHHHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCchhhhHHHHHHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc
Confidence            356788888889999999997 9999999999999999999999888878999999999999998765432         


Q ss_pred             --CCCeEEEecCCCChH
Q psy7191         132 --DPRLVPVYGKFSDLP  146 (413)
Q Consensus       132 --~~rv~~i~~nFs~l~  146 (413)
                        ..++++++++|.+++
T Consensus       207 ~~~~~i~~~~gd~~~~~  223 (328)
T d1nw3a_         207 KKHAEYTLERGDFLSEE  223 (328)
T ss_dssp             CCCCCEEEEECCTTSHH
T ss_pred             ccCCceEEEECcccccc
Confidence              247999999999875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.09  E-value=3.6e-06  Score=74.66  Aligned_cols=90  Identities=17%  Similarity=0.224  Sum_probs=65.8

Q ss_pred             cccchHhHHhccCC-CCCCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCC
Q psy7191          69 YPRTFQTSASGLND-SSDDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKF  142 (413)
Q Consensus        69 ~pvll~evi~~L~~-~~~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nF  142 (413)
                      |+.+++-+...+.. .+|++.++|..||+|.+|..|++..  |+.+|+|+|.++.+++.|+++++..+   ++.++.+++
T Consensus        22 Y~~~~~~i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~  101 (225)
T d1im8a_          22 YSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI  101 (225)
T ss_dssp             HHHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT
T ss_pred             HHHHHHHHHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh
Confidence            34444444333321 4678899999999999999999875  67899999999999999998776542   788888877


Q ss_pred             CChHHHHHhcCCCCCCccEEEEcCC
Q psy7191         143 SDLPNILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       143 s~l~~~L~~~~~~~~~VDGILfDLG  167 (413)
                      .+++         ....|.|+.-..
T Consensus       102 ~~~~---------~~~~d~i~~~~~  117 (225)
T d1im8a_         102 RHVE---------IKNASMVILNFT  117 (225)
T ss_dssp             TTCC---------CCSEEEEEEESC
T ss_pred             hccc---------cccceeeEEeee
Confidence            6541         235777776433

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.09  E-value=4.2e-06  Score=76.85  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHH
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~  150 (413)
                      +++..... +.++..++|.-||.|+++..+.++. +++|+|+|.++.+++.|+++...  . ++++++++++.+++    
T Consensus        57 ~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~----  130 (282)
T d2o57a1          57 SELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP----  130 (282)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS----
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhccccccccccccccccccccccc----
Confidence            34444444 7789999999999999999998875 56899999999999999876543  2 38999999998763    


Q ss_pred             hcCCCCCCccEEEE
Q psy7191         151 NMNNNFNSIDGIIM  164 (413)
Q Consensus       151 ~~~~~~~~VDGILf  164 (413)
                         ++.+.+|.|+.
T Consensus       131 ---~~~~sfD~V~~  141 (282)
T d2o57a1         131 ---CEDNSYDFIWS  141 (282)
T ss_dssp             ---SCTTCEEEEEE
T ss_pred             ---ccccccchhhc
Confidence               23457999984

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.05  E-value=7.6e-06  Score=74.74  Aligned_cols=85  Identities=12%  Similarity=0.165  Sum_probs=67.3

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCC
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      ++.|. ++||..++|.-||.|..+.+|.+..|++.|||+|.+|.+++.++++....+++.++..+......+...    .
T Consensus        67 l~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~----~  141 (230)
T d1g8sa_          67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANI----V  141 (230)
T ss_dssp             CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT----C
T ss_pred             HHhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccc----c
Confidence            45554 899999999999999999999998899999999999999999988876666888888888877655432    1


Q ss_pred             CCccEEEEcC
Q psy7191         157 NSIDGIIMDV  166 (413)
Q Consensus       157 ~~VDGILfDL  166 (413)
                      ..+|.+..|+
T Consensus       142 ~~v~~i~~~~  151 (230)
T d1g8sa_         142 EKVDVIYEDV  151 (230)
T ss_dssp             CCEEEEEECC
T ss_pred             ceeEEeeccc
Confidence            2355555443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.03  E-value=3.4e-06  Score=75.00  Aligned_cols=81  Identities=19%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHh
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~  151 (413)
                      +.+.+..+. ..+++.++|.-||+|.++..++++  +..|+|+|.++.+++.|+++.+..+ ++++++++..+++     
T Consensus        30 ~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-----  101 (251)
T d1wzna1          30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-----  101 (251)
T ss_dssp             HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-----
T ss_pred             HHHHHHHhc-CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhcc-----
Confidence            344555554 567789999999999999988875  3589999999999999998765444 8999999887653     


Q ss_pred             cCCCCCCccEEEE
Q psy7191         152 MNNNFNSIDGIIM  164 (413)
Q Consensus       152 ~~~~~~~VDGILf  164 (413)
                        . .+.+|.|+.
T Consensus       102 --~-~~~fD~I~~  111 (251)
T d1wzna1         102 --F-KNEFDAVTM  111 (251)
T ss_dssp             --C-CSCEEEEEE
T ss_pred             --c-ccccchHhh
Confidence              2 246888874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.1e-05  Score=74.39  Aligned_cols=72  Identities=21%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +.+++.++|.-+|.|.++..+++..|+..++|+|.++.+++.|+++.   +++.+++++..+++       +..+.+|.|
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~-------~~~~sfD~v  151 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-------FSDTSMDAI  151 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-------BCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhcc-------CCCCCEEEE
Confidence            56678999999999999999999999999999999999999998763   57888998887653       233578988


Q ss_pred             EE
Q psy7191         163 IM  164 (413)
Q Consensus       163 Lf  164 (413)
                      +.
T Consensus       152 ~~  153 (268)
T d1p91a_         152 IR  153 (268)
T ss_dssp             EE
T ss_pred             ee
Confidence            73

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.98  E-value=5.9e-06  Score=71.55  Aligned_cols=72  Identities=18%  Similarity=0.294  Sum_probs=56.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+++.++|.-||+|.+|..+.+.  +.+|+|+|.++.+++.|+++.... .++.+++++..++.       .+.+.+|.|
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~-------~~~~~fD~I  106 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-------FEDKTFDYV  106 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-------SCTTCEEEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhcccccccccccccccccc-------ccCcCceEE
Confidence            36678999999999999988764  568999999999999998876543 36788888777653       223568988


Q ss_pred             EE
Q psy7191         163 IM  164 (413)
Q Consensus       163 Lf  164 (413)
                      +.
T Consensus       107 ~~  108 (226)
T d1ve3a1         107 IF  108 (226)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.95  E-value=9.9e-06  Score=75.33  Aligned_cols=82  Identities=23%  Similarity=0.244  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++|..++|+-+|.|+-|..++.. +.++|+|+|++|.|++.++++.+.  . +++++++++..++.        ..+.+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--------~~~~~  175 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--------GENIA  175 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--------CCSCE
T ss_pred             cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--------cCCCC
Confidence            468999999999999999998876 567999999999999999886543  3 38999999876542        12469


Q ss_pred             cEEEEcCCCCccCc
Q psy7191         160 DGIIMDVGISDSQA  173 (413)
Q Consensus       160 DGILfDLGvSS~Ql  173 (413)
                      |.|++|+..+|.++
T Consensus       176 D~Ii~~~p~~~~~~  189 (260)
T d2frna1         176 DRILMGYVVRTHEF  189 (260)
T ss_dssp             EEEEECCCSSGGGG
T ss_pred             CEEEECCCCchHHH
Confidence            99999887776543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.93  E-value=1.5e-05  Score=71.05  Aligned_cols=75  Identities=21%  Similarity=0.281  Sum_probs=60.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      -.|..++|+.+|.|+-+.+.+.. +..+|+|+|+|+.|++.|+++++... +..++.++...+          ..++|.|
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~----------~~~fD~V  113 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF----------NSRVDIV  113 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC----------CCCCSEE
T ss_pred             CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh----------CCcCcEE
Confidence            35789999999999998877654 34699999999999999998876655 788888776443          2369999


Q ss_pred             EEcCCCC
Q psy7191         163 IMDVGIS  169 (413)
Q Consensus       163 LfDLGvS  169 (413)
                      +.|-.|.
T Consensus       114 i~nPP~~  120 (201)
T d1wy7a1         114 IMNPPFG  120 (201)
T ss_dssp             EECCCCS
T ss_pred             EEcCccc
Confidence            9887763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.88  E-value=2.3e-05  Score=65.86  Aligned_cols=82  Identities=15%  Similarity=0.118  Sum_probs=64.1

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--------------CCeEEE
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--------------PRLVPV  138 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--------------~rv~~i  138 (413)
                      +++.+..|. +.|+..++|.-||.|.++..++++  +..|+|+|+++.+++.|+++....              ..+.++
T Consensus         9 ~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_           9 LQQYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            566788887 889999999999999999999886  579999999999999999876431              245677


Q ss_pred             ecCCCChHHHHHhcCCCCCCccEEE
Q psy7191         139 YGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus       139 ~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      ++++.++......      .+|.|+
T Consensus        86 ~~d~~~l~~~~~~------~~D~i~  104 (201)
T d1pjza_          86 CGDFFALTARDIG------HCAAFY  104 (201)
T ss_dssp             EECCSSSTHHHHH------SEEEEE
T ss_pred             ccccccccccccc------ceeEEE
Confidence            8887776554432      366665

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.87  E-value=1.1e-05  Score=80.01  Aligned_cols=102  Identities=12%  Similarity=0.128  Sum_probs=80.6

Q ss_pred             cccCccHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHhHHhhhhhccCCccccchHhHHhccCCCCCCCEEEEEecCCc
Q psy7191          18 EHMSLDFAEYLRELTRAQFVSNNKFTIEEEETLKKNLASLKRLSEDIYNKKYPRTFQTSASGLNDSSDDVTMIDMTYGDG   97 (413)
Q Consensus        18 ~~~grdl~~~lr~~~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi~~L~~~~~~~i~VDaTlG~G   97 (413)
                      +++.|.|..+|-+++-......      +.+.    +..-+....++|++=.|-++.++++.+. +++|++++|.-||.|
T Consensus       160 ~~~~~~~~~~i~~~~y~r~v~p------~~~~----L~~Y~~fs~~vYGEl~~~~i~~Il~~l~-Lkpgd~fLDLGCG~G  228 (406)
T d1u2za_         160 DKIPRSFIHDFLHIVYTRSIHP------QANK----LKHYKAFSNYVYGELLPNFLSDVYQQCQ-LKKGDTFMDLGSGVG  228 (406)
T ss_dssp             CEEEHHHHHHHHHHHHHHHTGG------GGGG----GCSCCSSGGGCCCCBCHHHHHHHHHHTT-CCTTCEEEEESCTTS
T ss_pred             CCCCHHHHHHHHHHhhcccccC------ChHH----hcccCCCCCCccccCCHHHHHHHHHHhC-CCCCCEEEeCCCCCc
Confidence            3456777777777766555421      1111    1222456789999999999999999997 999999999999999


Q ss_pred             hhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          98 NHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        98 GHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      +.+..+....|..+|+|+|+++.+++.|+++.+
T Consensus       229 ~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~  261 (406)
T d1u2za_         229 NCVVQAALECGCALSFGCEIMDDASDLTILQYE  261 (406)
T ss_dssp             HHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence            999999988887799999999999999987654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.1e-05  Score=71.32  Aligned_cols=76  Identities=18%  Similarity=0.130  Sum_probs=60.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      ..++..++|.-||.|+.+..+++..+ .+|+|+|.++.+++.|+++.+..  ++++++++++.++.       ...+.+|
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-------~~~~~fD  129 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-------PEPDSYD  129 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-------CCSSCEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccc-------ccccccc
Confidence            56678999999999999999987764 48999999999999999876542  37889999887653       2235789


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|+.-.
T Consensus       130 ~I~~~~  135 (222)
T d2ex4a1         130 VIWIQW  135 (222)
T ss_dssp             EEEEES
T ss_pred             cccccc
Confidence            988643

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.84  E-value=3.7e-05  Score=67.05  Aligned_cols=83  Identities=13%  Similarity=0.108  Sum_probs=63.9

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C--CCeEEEecCCCChHHHHH
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D--PRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~--~rv~~i~~nFs~l~~~L~  150 (413)
                      -+++.|. +.+++.++|..+|.|.-+.++++..+  +|+|+|.|+.|++.|+++++.  .  .++.+++++.-+   .+ 
T Consensus        43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~---~~-  115 (194)
T d1dusa_          43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NV-  115 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TC-
T ss_pred             HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh---hh-
Confidence            3566675 78899999999999999988887654  799999999999999886542  2  278999888632   11 


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                          ..+.+|.|+.|..+
T Consensus       116 ----~~~~fD~Ii~~~p~  129 (194)
T d1dusa_         116 ----KDRKYNKIITNPPI  129 (194)
T ss_dssp             ----TTSCEEEEEECCCS
T ss_pred             ----ccCCceEEEEcccE
Confidence                23479999987554

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.84  E-value=2.2e-05  Score=70.12  Aligned_cols=70  Identities=17%  Similarity=0.138  Sum_probs=56.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      +++.++|.-||+|.+|..++++.  .+|+|+|.++.+++.|+++..... ++.+++++..++.       . .+.+|.|+
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-------~-~~~fD~i~  106 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-------I-NRKFDLIT  106 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-------C-SCCEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhc-------c-cccccccc
Confidence            35689999999999999998874  479999999999999988765433 7999998876542       1 24689888


Q ss_pred             E
Q psy7191         164 M  164 (413)
Q Consensus       164 f  164 (413)
                      .
T Consensus       107 ~  107 (246)
T d1y8ca_         107 C  107 (246)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.4e-05  Score=72.46  Aligned_cols=94  Identities=18%  Similarity=0.119  Sum_probs=67.6

Q ss_pred             ccchHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhc-CCCEEEEEeCCHHHHHHHHhhhcC-------CCCeEEEec
Q psy7191          70 PRTFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENI-GNVKVICLDRDKESFEKAKTLAAN-------DPRLVPVYG  140 (413)
Q Consensus        70 pvll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~-p~g~Via~DrD~~Al~~Ak~ll~~-------~~rv~~i~~  140 (413)
                      |-|.-.+++.|. .++||..++|..+|.|..|..+.+.. |.++|+|+|+++++++.|+++++.       +.++.++.+
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g  139 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG  139 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence            446677888882 17899999999999996665555544 679999999999999999876542       236777776


Q ss_pred             CCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         141 KFSDLPNILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       141 nFs~l~~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                      +..+.   +..    ...+|.|+++.++..
T Consensus       140 D~~~~---~~~----~~~fD~I~~~~~~~~  162 (224)
T d1i1na_         140 DGRMG---YAE----EAPYDAIHVGAAAPV  162 (224)
T ss_dssp             CGGGC---CGG----GCCEEEEEECSBBSS
T ss_pred             ecccc---cch----hhhhhhhhhhcchhh
Confidence            64322   111    235899988877643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.80  E-value=3.4e-05  Score=69.16  Aligned_cols=79  Identities=10%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++-++||..||.|.++..+++..|+..++|+|+.+.++..|.++.+..  +++.+++++...+...+.     .+.+|.|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~-----~~~~d~v  103 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-----PGEVKRV  103 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-----TTSCCEE
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-----chhhhcc
Confidence            345999999999999999999999999999999999999987765433  489999999877654442     3568988


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      ++....
T Consensus       104 ~i~fp~  109 (204)
T d2fcaa1         104 YLNFSD  109 (204)
T ss_dssp             EEESCC
T ss_pred             cccccc
Confidence            865443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=2.6e-05  Score=73.29  Aligned_cols=87  Identities=13%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L  149 (413)
                      |++.++..+.  +.+..++|+++|.|--+..++...|+.+|+|+|+++.|++.|+++.+.+  .++.++++++-+.   +
T Consensus        97 lv~~~l~~~~--~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~---~  171 (274)
T d2b3ta1          97 LVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---L  171 (274)
T ss_dssp             HHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---G
T ss_pred             hhhhHhhhhc--ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc---c
Confidence            4555555543  4456799999999999999999999999999999999999999876543  3799999986431   1


Q ss_pred             HhcCCCCCCccEEEEcCCC
Q psy7191         150 KNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGv  168 (413)
                           ...++|.|+.|-.|
T Consensus       172 -----~~~~fDlIvsNPPY  185 (274)
T d2b3ta1         172 -----AGQQFAMIVSNPPY  185 (274)
T ss_dssp             -----TTCCEEEEEECCCC
T ss_pred             -----CCCceeEEEecchh
Confidence                 12369999988776

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.79  E-value=2.9e-05  Score=65.85  Aligned_cols=86  Identities=7%  Similarity=0.078  Sum_probs=65.1

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHHHHhcCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      +.|..--.|..++|+.+|.|+-+...|.+.. .+|+++|.|+.|++.+++.++..   +++++++++.   .++++... 
T Consensus         7 n~l~~~~~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~---~~~l~~~~-   81 (152)
T d2esra1           7 NMIGPYFNGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA---ERAIDCLT-   81 (152)
T ss_dssp             HHHCSCCCSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH---HHHHHHBC-
T ss_pred             HHHHhhCCCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccc---cccccccc-
Confidence            4554223588999999999998887776633 49999999999999998877654   2899999863   34555432 


Q ss_pred             CCCCccEEEEcCCCCc
Q psy7191         155 NFNSIDGIIMDVGISD  170 (413)
Q Consensus       155 ~~~~VDGILfDLGvSS  170 (413)
                        +++|.|++|-.|..
T Consensus        82 --~~fDiIf~DPPy~~   95 (152)
T d2esra1          82 --GRFDLVFLDPPYAK   95 (152)
T ss_dssp             --SCEEEEEECCSSHH
T ss_pred             --cccceeEechhhcc
Confidence              47999999987743

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.4e-05  Score=71.70  Aligned_cols=84  Identities=15%  Similarity=0.276  Sum_probs=62.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ..+|+.++|..||.|+.+..|++..+ .+|+|+|+++.+++.|+++.+... ++.++..+...   +...+  +.+++|.
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~fD~  124 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED---VAPTL--PDGHFDG  124 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH---HGGGS--CTTCEEE
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccc---ccccc--ccccccc
Confidence            35788999999999999999887643 589999999999999998766544 67777665433   33222  2357999


Q ss_pred             EEEcCCCCccC
Q psy7191         162 IIMDVGISDSQ  172 (413)
Q Consensus       162 ILfDLGvSS~Q  172 (413)
                      |+||.=.+...
T Consensus       125 i~fD~~~~~~~  135 (229)
T d1zx0a1         125 ILYDTYPLSEE  135 (229)
T ss_dssp             EEECCCCCBGG
T ss_pred             eeecccccccc
Confidence            99998655543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.74  E-value=2.4e-05  Score=70.64  Aligned_cols=76  Identities=16%  Similarity=0.081  Sum_probs=56.6

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .+++..++|..||.|||+..+++. +.+.|+|+|.++.+++.|+++.....   ++.+++++.....     .. ....+
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~-----~~-~~~~f   94 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-----MD-LGKEF   94 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-----CC-CSSCE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhc-----cc-ccccc
Confidence            457889999999999999998775 44689999999999999988765432   6888887753321     00 12368


Q ss_pred             cEEEEc
Q psy7191         160 DGIIMD  165 (413)
Q Consensus       160 DGILfD  165 (413)
                      |.|+.-
T Consensus        95 D~V~~~  100 (252)
T d1ri5a_          95 DVISSQ  100 (252)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            888754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.69  E-value=4.8e-05  Score=69.36  Aligned_cols=91  Identities=12%  Similarity=0.104  Sum_probs=69.9

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNIL  149 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L  149 (413)
                      |-|.--+++.|. ++++..++|..+|.|.-| ++|.++ .++|+++|+|+++++.|++++..+.++.+++++...-   +
T Consensus        56 p~~~a~ml~~L~-l~~g~~VLdIG~GsGy~t-a~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g---~  129 (224)
T d1vbfa_          56 LNLGIFMLDELD-LHKGQKVLEIGTGIGYYT-ALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG---Y  129 (224)
T ss_dssp             HHHHHHHHHHTT-CCTTCEEEEECCTTSHHH-HHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC---C
T ss_pred             hhhHHHHHHHhh-hcccceEEEecCCCCHHH-HHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCchhhc---c
Confidence            445556788887 999999999999999665 556655 4799999999999999999877667999998875431   1


Q ss_pred             HhcCCCCCCccEEEEcCCCCc
Q psy7191         150 KNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       150 ~~~~~~~~~VDGILfDLGvSS  170 (413)
                      .+    ..++|.|++..++..
T Consensus       130 ~~----~~pfD~Iiv~~a~~~  146 (224)
T d1vbfa_         130 EE----EKPYDRVVVWATAPT  146 (224)
T ss_dssp             GG----GCCEEEEEESSBBSS
T ss_pred             hh----hhhHHHHHhhcchhh
Confidence            11    135899998877653

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.69  E-value=6.2e-05  Score=66.69  Aligned_cols=82  Identities=20%  Similarity=0.178  Sum_probs=65.5

Q ss_pred             hHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhc
Q psy7191          75 TSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        75 evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      -.++.+. ++||..++|.-||+|..|..+.+..  ++|+|+|..+.+++.|+++...  .+++.+++++..+++      
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~------   77 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP------   77 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC------
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccc------
Confidence            3556665 8999999999999999999998775  5899999999999999887543  458999999876643      


Q ss_pred             CCCCCCccEEEEcC
Q psy7191         153 NNNFNSIDGIIMDV  166 (413)
Q Consensus       153 ~~~~~~VDGILfDL  166 (413)
                       ++.+++|.|+.-.
T Consensus        78 -~~~~~fD~v~~~~   90 (234)
T d1xxla_          78 -FPDDSFDIITCRY   90 (234)
T ss_dssp             -SCTTCEEEEEEES
T ss_pred             -ccccccceeeeec
Confidence             2235799988643

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.68  E-value=6e-05  Score=68.87  Aligned_cols=83  Identities=19%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      .+.+..|. ..+++.++|+-||.|..|..+|..... .|+|+|.++.+++.|+++....++++++++++.++       .
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~-------~  153 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-------T  153 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGC-------C
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEcccccc-------c
Confidence            34455554 566789999999999999999987654 89999999999999998876656788888887654       2


Q ss_pred             CCCCCccEEEEc
Q psy7191         154 NNFNSIDGIIMD  165 (413)
Q Consensus       154 ~~~~~VDGILfD  165 (413)
                      ...+.+|.|+.-
T Consensus       154 ~~~~~fD~I~~~  165 (254)
T d1xtpa_         154 LPPNTYDLIVIQ  165 (254)
T ss_dssp             CCSSCEEEEEEE
T ss_pred             cCCCccceEEee
Confidence            233578988864

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.65  E-value=4.6e-05  Score=72.45  Aligned_cols=83  Identities=18%  Similarity=0.149  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .++|..++|+.+|.||-|.+++.. ...+|+++|+++.|++.|+++++.  . +++++++++.-+.-..+...+   .+|
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~---~~f  218 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG---EKF  218 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT---CCE
T ss_pred             cCCCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhcc---CCC
Confidence            467899999999999999998866 335899999999999999886543  3 388999887543333343333   369


Q ss_pred             cEEEEcCCCC
Q psy7191         160 DGIIMDVGIS  169 (413)
Q Consensus       160 DGILfDLGvS  169 (413)
                      |.|++|..++
T Consensus       219 D~Vi~DpP~~  228 (324)
T d2as0a2         219 DIVVLDPPAF  228 (324)
T ss_dssp             EEEEECCCCS
T ss_pred             CchhcCCccc
Confidence            9999887764

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.65  E-value=5.3e-05  Score=67.85  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      .+.++||..||.|.++..+.+..|+..++|+|+.+.++..|.++...  .+++.+++++..++...+.     ...+|.|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~-----~~~~~~i  105 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFE-----DGEIDRL  105 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSC-----TTCCSEE
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhcc-----CCceehh
Confidence            34589999999999999999999999999999999999998665443  3589999999888754442     3468888


Q ss_pred             EE
Q psy7191         163 IM  164 (413)
Q Consensus       163 Lf  164 (413)
                      .+
T Consensus       106 ~i  107 (204)
T d1yzha1         106 YL  107 (204)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.65  E-value=3.3e-05  Score=73.40  Aligned_cols=81  Identities=15%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      ..|+.++|+.+|.||.|.++...  ..+|+|+|.++.|++.|+++.+.  ..++.+++++..+..+.+...+   +.+|.
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~---~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEG---ERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTT---CCEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhh---cCCCE
Confidence            35789999999999999887643  46899999999999999987653  3478888887655545554433   36999


Q ss_pred             EEEcCCCC
Q psy7191         162 IIMDVGIS  169 (413)
Q Consensus       162 ILfDLGvS  169 (413)
                      |++|..++
T Consensus       219 Vi~DpP~~  226 (318)
T d1wxxa2         219 VVLDPPAF  226 (318)
T ss_dssp             EEECCCCS
T ss_pred             EEEcCCcc
Confidence            99887764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.64  E-value=2.5e-05  Score=70.87  Aligned_cols=93  Identities=18%  Similarity=0.184  Sum_probs=73.1

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~  147 (413)
                      |-|...+++.|. ++++..++|.-.|.|. ..++|.++-+++|+++|+|++..+.|+++++..  .++++++++-.+-  
T Consensus        64 P~~~a~ml~~L~-l~~g~~VLeIGsGsGY-~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g--  139 (215)
T d1jg1a_          64 PHMVAIMLEIAN-LKPGMNILEVGTGSGW-NAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG--  139 (215)
T ss_dssp             HHHHHHHHHHHT-CCTTCCEEEECCTTSH-HHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC--
T ss_pred             hhhHHHHHHhhc-cCccceEEEecCCCCh-hHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC--
Confidence            667788899997 9999999999999995 556777664578999999999999999887654  4999999885431  


Q ss_pred             HHHhcCCCCCCccEEEEcCCCCcc
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGISDS  171 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGvSS~  171 (413)
                       +..    ..++|.|++.-++.+.
T Consensus       140 -~~~----~~pfD~Iiv~~a~~~i  158 (215)
T d1jg1a_         140 -FPP----KAPYDVIIVTAGAPKI  158 (215)
T ss_dssp             -CGG----GCCEEEEEECSBBSSC
T ss_pred             -Ccc----cCcceeEEeecccccC
Confidence             111    2469999998887653

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=97.64  E-value=8.3e-05  Score=68.56  Aligned_cols=88  Identities=14%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILK  150 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~  150 (413)
                      ++.+++.+..+.+...+||..||.|..+..+++.+|. ++|+|+|.++.+++.|+++.+..+ +++++++++.+++    
T Consensus        15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~----   90 (281)
T d2gh1a1          15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE----   90 (281)
T ss_dssp             HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC----
T ss_pred             HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc----
Confidence            3444444433556678999999999999999888874 799999999999999998876555 8899999987653    


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                         . .+++|.|+....+
T Consensus        91 ---~-~~~fD~v~~~~~l  104 (281)
T d2gh1a1          91 ---L-NDKYDIAICHAFL  104 (281)
T ss_dssp             ---C-SSCEEEEEEESCG
T ss_pred             ---c-cCCceEEEEehhh
Confidence               1 2469999866543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=5.4e-05  Score=67.36  Aligned_cols=79  Identities=6%  Similarity=0.043  Sum_probs=57.7

Q ss_pred             hhHHHHHHHHHhHHhhhhhccCCccccchHhHH-hccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHH
Q psy7191          45 EEEETLKKNLASLKRLSEDIYNKKYPRTFQTSA-SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFE  123 (413)
Q Consensus        45 ~~~e~~~~~~~sl~~~~~n~y~~H~pvll~evi-~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~  123 (413)
                      -+-|-|++.|.+ ..+  ..+....+-.|.+.+ +.|. +.+++.++|.-||.|-++..+.+.  +..|+|+|..++|++
T Consensus         8 ~~~e~W~~~~~~-~~~--~w~~~~~~~~l~~~~~~~l~-~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~   81 (229)
T d2bzga1           8 LTLEEWQDKWVN-GKT--AFHQEQGHQLLKKHLDTFLK-GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQ   81 (229)
T ss_dssp             CCHHHHHHHHHH-TCC--TTCCTTCCHHHHHHHHHHHT-TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHH
T ss_pred             CCHHHHHHHHcc-CCC--CCccCCCCHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHH
Confidence            344578888866 222  233444444455545 4454 788999999999999999999875  468999999999999


Q ss_pred             HHHhhh
Q psy7191         124 KAKTLA  129 (413)
Q Consensus       124 ~Ak~ll  129 (413)
                      .|+++.
T Consensus        82 ~a~~~~   87 (229)
T d2bzga1          82 EFFTEQ   87 (229)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            987754

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=5.1e-05  Score=71.23  Aligned_cols=89  Identities=19%  Similarity=0.195  Sum_probs=66.1

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~  148 (413)
                      |++.+++.+. ..+...++|+|.|+|-=+..++ +.|+++|+|+|++++|++.|+++.+.++   ++.++++++.+..  
T Consensus        98 lv~~~~~~~~-~~~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~--  173 (271)
T d1nv8a_          98 LVELALELIR-KYGIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF--  173 (271)
T ss_dssp             HHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG--
T ss_pred             hhhhhhhhhc-cccccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccc--
Confidence            4444555443 3345689999999998777766 4689999999999999999998765442   7888888886542  


Q ss_pred             HHhcCCCCCCccEEEEcCCC
Q psy7191         149 LKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       149 L~~~~~~~~~VDGILfDLGv  168 (413)
                       ...   .+++|.|+.|-.|
T Consensus       174 -~~~---~~~fDlIVsNPPY  189 (271)
T d1nv8a_         174 -KEK---FASIEMILSNPPY  189 (271)
T ss_dssp             -GGG---TTTCCEEEECCCC
T ss_pred             -ccc---cCcccEEEEcccc
Confidence             111   2469999999998

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.54  E-value=8.7e-05  Score=66.53  Aligned_cols=70  Identities=21%  Similarity=0.194  Sum_probs=55.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      .|+.++|+.+|+|.-+...+.. +..+|+|+|+|+.|++.|+++.   .++.++++++.++          .+++|.|+.
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~---~~~~~~~~D~~~l----------~~~fD~Vi~  113 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSEI----------SGKYDTWIM  113 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGGC----------CCCEEEEEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc---ccccEEEEehhhc----------CCcceEEEe
Confidence            5889999999999877655543 4458999999999999998875   3578888887653          246999998


Q ss_pred             cCCC
Q psy7191         165 DVGI  168 (413)
Q Consensus       165 DLGv  168 (413)
                      |-.+
T Consensus       114 NPPf  117 (197)
T d1ne2a_         114 NPPF  117 (197)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            8666

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=7.5e-05  Score=70.67  Aligned_cols=88  Identities=14%  Similarity=0.098  Sum_probs=67.2

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~  147 (413)
                      ..|++.+++.+. +.++..++|+-+|.|..|..|.+..  .+|+|+|.++.|++.|++..+.  ..++.+++++....-.
T Consensus       198 e~l~~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~  274 (358)
T d1uwva2         198 QKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT  274 (358)
T ss_dssp             HHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred             hHHHHHHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhh
Confidence            467788888886 7888999999999999999887653  6899999999999999886543  3489999988654321


Q ss_pred             HHHhcCCCCCCccEEE
Q psy7191         148 ILKNMNNNFNSIDGII  163 (413)
Q Consensus       148 ~L~~~~~~~~~VDGIL  163 (413)
                      ....   ....+|.|+
T Consensus       275 ~~~~---~~~~~d~vi  287 (358)
T d1uwva2         275 KQPW---AKNGFDKVL  287 (358)
T ss_dssp             SSGG---GTTCCSEEE
T ss_pred             hhhh---hhccCceEE
Confidence            1111   123588998

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.51  E-value=0.00016  Score=67.43  Aligned_cols=79  Identities=20%  Similarity=0.302  Sum_probs=63.3

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC---CeEEEecCCCChHHHH
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP---RLVPVYGKFSDLPNIL  149 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~---rv~~i~~nFs~l~~~L  149 (413)
                      ++.+++.|. ++||..++|.-||.||-+..+.++.+ ++|+|+|++++.++.|+++.+..+   ++.+...++.++    
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----  114 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----  114 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----
Confidence            456788886 99999999999999999988877764 699999999999999988765532   677777766543    


Q ss_pred             HhcCCCCCCccEEE
Q psy7191         150 KNMNNNFNSIDGII  163 (413)
Q Consensus       150 ~~~~~~~~~VDGIL  163 (413)
                            ++.+|.|+
T Consensus       115 ------~~~fD~i~  122 (280)
T d2fk8a1         115 ------AEPVDRIV  122 (280)
T ss_dssp             ------CCCCSEEE
T ss_pred             ------ccchhhhh
Confidence                  23688887

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.47  E-value=0.00023  Score=61.51  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=59.4

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCCeEEEecCCCChHHHHHh
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPRLVPVYGKFSDLPNILKN  151 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~rv~~i~~nFs~l~~~L~~  151 (413)
                      .+++..+. ...++.++|.-||.|.++..++++.  .+|+|+|+++.+++.++++.+.  .+++.+...++..+.     
T Consensus        20 ~~~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~-----   91 (198)
T d2i6ga1          20 SDVLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT-----   91 (198)
T ss_dssp             HHHHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC-----
T ss_pred             HHHHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc-----
Confidence            35555554 3334689999999999999999873  5899999999999999876543  236888888877653     


Q ss_pred             cCCCCCCccEEEE
Q psy7191         152 MNNNFNSIDGIIM  164 (413)
Q Consensus       152 ~~~~~~~VDGILf  164 (413)
                        . .+.+|.|+.
T Consensus        92 --~-~~~fD~I~~  101 (198)
T d2i6ga1          92 --F-DGEYDFILS  101 (198)
T ss_dssp             --C-CCCEEEEEE
T ss_pred             --c-cccccEEEE
Confidence              1 246888874

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.39  E-value=2.9e-05  Score=71.80  Aligned_cols=95  Identities=13%  Similarity=0.177  Sum_probs=79.8

Q ss_pred             ccCCcc---ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEec
Q psy7191          64 IYNKKY---PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYG  140 (413)
Q Consensus        64 ~y~~H~---pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~  140 (413)
                      -|+||+   +..++.+++.+. +.+++.+++.-.|.|.=|..|++..  .+|+|+|+|+..++.++++...+++++++++
T Consensus         6 k~GQnFL~d~~ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~   82 (245)
T d1yuba_           6 KYSQNFLTSEKVLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQ   82 (245)
T ss_dssp             CSCCCBCCCTTTHHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCS
T ss_pred             CCCCcccCCHHHHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhh
Confidence            478888   899999999997 8899999999999999999999874  5899999999988877666655569999999


Q ss_pred             CCCChHHHHHhcCCCCCCccEEEEcCCC
Q psy7191         141 KFSDLPNILKNMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       141 nFs~l~~~L~~~~~~~~~VDGILfDLGv  168 (413)
                      ++-+++       ++....+.|+-+|.|
T Consensus        83 D~l~~~-------~~~~~~~~vv~NLPY  103 (245)
T d1yuba_          83 DILQFQ-------FPNKQRYKIVGNIPY  103 (245)
T ss_dssp             CCTTTT-------CCCSSEEEEEEECCS
T ss_pred             hhhccc-------cccceeeeEeeeeeh
Confidence            998764       222356779999998

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=97.38  E-value=0.00021  Score=64.57  Aligned_cols=84  Identities=19%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~  146 (413)
                      ....+.+++.+. ..+.+.+||.-+|.|..+..+++++|+.+++++|. |.+++.++++....   .|+.++.++|-+. 
T Consensus        66 ~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-  142 (253)
T d1tw3a2          66 DVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-  142 (253)
T ss_dssp             TTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred             HHHHHHHHhhcC-CccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-
Confidence            345577777775 67788999999999999999999999999999998 67888887765432   3899999987431 


Q ss_pred             HHHHhcCCCCCCccEEEE
Q psy7191         147 NILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILf  164 (413)
                             . +.++|.|++
T Consensus       143 -------~-~~~~D~v~~  152 (253)
T d1tw3a2         143 -------L-PRKADAIIL  152 (253)
T ss_dssp             -------C-SSCEEEEEE
T ss_pred             -------c-ccchhheee
Confidence                   1 235888874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.33  E-value=0.00023  Score=65.72  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccE
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDG  161 (413)
                      .++|..++|+-||.|.-+.++.. . ..+|+|+|+|+.|++.|+++.+... +..+++++.   ...+.     .+++|.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~-~-g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~---~~~~~-----~~~fD~  187 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEK-L-GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EAALP-----FGPFDL  187 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHH-T-TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HHHGG-----GCCEEE
T ss_pred             cCccCEEEEcccchhHHHHHHHh-c-CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccc---ccccc-----ccccch
Confidence            46889999999999987766543 3 4789999999999999998765433 566777654   33332     246999


Q ss_pred             EEEcC
Q psy7191         162 IIMDV  166 (413)
Q Consensus       162 ILfDL  166 (413)
                      |+.++
T Consensus       188 V~ani  192 (254)
T d2nxca1         188 LVANL  192 (254)
T ss_dssp             EEEEC
T ss_pred             hhhcc
Confidence            99763

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.25  E-value=0.00032  Score=61.32  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=63.7

Q ss_pred             hccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHHHHhcCC
Q psy7191          78 SGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNILKNMNN  154 (413)
Q Consensus        78 ~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~L~~~~~  154 (413)
                      +.|....+|..++|+.+|.|+-+...|.+- ..+|+++|.|+.|++.++++++.  .. ++++++++....-+.+...+ 
T Consensus        34 n~l~~~~~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~-  111 (182)
T d2fhpa1          34 NMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEK-  111 (182)
T ss_dssp             HHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTT-
T ss_pred             HHHHHhcCCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccC-
Confidence            444323468899999999999999888874 24899999999999999886643  23 89999887543323332222 


Q ss_pred             CCCCccEEEEcCCC
Q psy7191         155 NFNSIDGIIMDVGI  168 (413)
Q Consensus       155 ~~~~VDGILfDLGv  168 (413)
                        .++|.|++|-.|
T Consensus       112 --~~fDlIflDPPY  123 (182)
T d2fhpa1         112 --LQFDLVLLDPPY  123 (182)
T ss_dssp             --CCEEEEEECCCG
T ss_pred             --CCcceEEechhh
Confidence              369999988776

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=0.00037  Score=65.49  Aligned_cols=80  Identities=20%  Similarity=0.314  Sum_probs=64.4

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l~~~  148 (413)
                      +++.+++.|. +++|..++|.-||.||-+..++++.+ ++|+|+|++++-++.++++.+.  .. ++.+...++...   
T Consensus        49 k~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~---  123 (291)
T d1kpia_          49 KRKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---  123 (291)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---
T ss_pred             HHHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc---
Confidence            4566788887 99999999999999999999998875 6999999999999998876543  23 788877776321   


Q ss_pred             HHhcCCCCCCccEEE
Q psy7191         149 LKNMNNNFNSIDGII  163 (413)
Q Consensus       149 L~~~~~~~~~VDGIL  163 (413)
                             .+++|.|+
T Consensus       124 -------~~~fD~i~  131 (291)
T d1kpia_         124 -------DEPVDRIV  131 (291)
T ss_dssp             -------CCCCSEEE
T ss_pred             -------ccccceEe
Confidence                   24689887

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.23  E-value=0.00093  Score=60.75  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPN  147 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~  147 (413)
                      .....+++.+. ..+.+.++|.-+|.|..+..|++++|+.+++++|+ |++++.+++.++..   +|+.++.++|-.-  
T Consensus        68 ~~~~~~~~~~d-~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~--  143 (256)
T d1qzza2          68 LAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--  143 (256)
T ss_dssp             TTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--
T ss_pred             HHHHHHHhcCC-CccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc--
Confidence            34455666664 66778999999999999999999999999999998 88888888765432   3899988876431  


Q ss_pred             HHHhcCCCCCCccEEEE
Q psy7191         148 ILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILf  164 (413)
                            . +..+|.|++
T Consensus       144 ------~-p~~~D~v~~  153 (256)
T d1qzza2         144 ------L-PVTADVVLL  153 (256)
T ss_dssp             ------C-SCCEEEEEE
T ss_pred             ------c-cccchhhhc
Confidence                  1 235788774

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00064  Score=59.03  Aligned_cols=68  Identities=22%  Similarity=0.371  Sum_probs=51.4

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .++..++|.-||.|.++..+.+.  +.+|+|+|.++.+++.|+++...  .  ++.++..+++       .+.+.+|.|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~--~--~~~~~~~~l~-------~~~~~fD~ii  107 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVK--N--VVEAKAEDLP-------FPSGAFEAVL  107 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCS--C--EEECCTTSCC-------SCTTCEEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccccc--c--cccccccccc-------ccccccccee
Confidence            45678999999999999988765  56999999999999999886422  2  3566665542       2235789887


Q ss_pred             E
Q psy7191         164 M  164 (413)
Q Consensus       164 f  164 (413)
                      .
T Consensus       108 ~  108 (246)
T d2avna1         108 A  108 (246)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.22  E-value=0.00049  Score=64.16  Aligned_cols=82  Identities=15%  Similarity=0.136  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhc-----CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHHHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENI-----GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~-----p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      ++++..++|.+||.||-..++++.+     ++..++|+|+|+.++..|+..+... ....++++++-..        ...
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--------~~~  186 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN--------LLV  186 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC--------CCC
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc--------ccc
Confidence            6778899999999999988887654     3458999999999999987654322 2566666554221        123


Q ss_pred             CCccEEEEcCCCCccC
Q psy7191         157 NSIDGIIMDVGISDSQ  172 (413)
Q Consensus       157 ~~VDGILfDLGvSS~Q  172 (413)
                      .++|.|+.|..|+...
T Consensus       187 ~~fD~vi~NPPy~~~~  202 (328)
T d2f8la1         187 DPVDVVISDLPVGYYP  202 (328)
T ss_dssp             CCEEEEEEECCCSEES
T ss_pred             ccccccccCCCCCCCc
Confidence            4799999998886543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.21  E-value=0.00051  Score=64.29  Aligned_cols=80  Identities=19%  Similarity=0.286  Sum_probs=66.1

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChHHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLPNI  148 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~~~  148 (413)
                      +++.+++.|. ++||..++|.-||.||=+..+.+.. +++|.|++++++-++.|+++.+..   +++.+...++.+++  
T Consensus        50 k~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          50 KIDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc--
Confidence            4566777887 9999999999999999999999887 489999999999999998875543   38999998886542  


Q ss_pred             HHhcCCCCCCccEEE
Q psy7191         149 LKNMNNNFNSIDGII  163 (413)
Q Consensus       149 L~~~~~~~~~VDGIL  163 (413)
                              +.+|.|+
T Consensus       126 --------~~fD~i~  132 (285)
T d1kpga_         126 --------EPVDRIV  132 (285)
T ss_dssp             --------CCCSEEE
T ss_pred             --------cccccee
Confidence                    3588877

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.17  E-value=0.00039  Score=59.99  Aligned_cols=80  Identities=11%  Similarity=0.027  Sum_probs=53.6

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ..|+.++|+.+|.|+-+.+.+.+  .++++++|.|+.|++.++++++..+ ...++.   .+.+.++........++|.|
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~---~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVA---LPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEEC---SCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceee---eehhcccccccccCCcccee
Confidence            46889999999999988776665  4689999999999999988765432 222222   22232222211122469999


Q ss_pred             EEcCCC
Q psy7191         163 IMDVGI  168 (413)
Q Consensus       163 LfDLGv  168 (413)
                      ++|=.|
T Consensus       115 f~DPPY  120 (171)
T d1ws6a1         115 FMAPPY  120 (171)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            988654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=97.11  E-value=0.00054  Score=60.37  Aligned_cols=68  Identities=15%  Similarity=0.290  Sum_probs=54.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      .++.++|..||.|..+..+.+..  .+|+|+|.++++++.|+++..  .++.++++++.++.       . .+++|.|++
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~-------~-~~~fD~I~~   87 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQ-------L-PRRYDNIVL   87 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCC-------C-SSCEEEEEE
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc--cccccccccccccc-------c-ccccccccc
Confidence            36689999999999998887653  469999999999999988753  26888998876542       1 247999985

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.06  E-value=0.00034  Score=63.31  Aligned_cols=94  Identities=15%  Similarity=0.202  Sum_probs=68.9

Q ss_pred             ccchHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhc-C-----CCEEEEEeCCHHHHHHHHhhhcC-------CCCe
Q psy7191          70 PRTFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENI-G-----NVKVICLDRDKESFEKAKTLAAN-------DPRL  135 (413)
Q Consensus        70 pvll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~-p-----~g~Via~DrD~~Al~~Ak~ll~~-------~~rv  135 (413)
                      |-|.--+++.|. ++++++.++|.-+|.|..|..|.+.+ +     ..+|+++|++++.++.|++++..       ..++
T Consensus        64 P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv  143 (223)
T d1r18a_          64 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  143 (223)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence            567778888882 27899999999999996665554443 2     35999999999999999876432       2389


Q ss_pred             EEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       136 ~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                      .+++++..+.   +..    ...+|.|+++-++..
T Consensus       144 ~~~~~d~~~~---~~~----~~~fD~Iiv~~a~~~  171 (223)
T d1r18a_         144 LIVEGDGRKG---YPP----NAPYNAIHVGAAAPD  171 (223)
T ss_dssp             EEEESCGGGC---CGG----GCSEEEEEECSCBSS
T ss_pred             EEEecccccc---ccc----ccceeeEEEEeechh
Confidence            9999886532   111    236999999888754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.06  E-value=0.0015  Score=59.48  Aligned_cols=89  Identities=8%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             cchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHH
Q psy7191          71 RTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        71 vll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~  150 (413)
                      -.++.+++.+. +++++.+++.-.|.|-=|..||+..  .+|+|+|+|+..++..+++...+++++++++++-.++    
T Consensus         8 ~i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~----   80 (235)
T d1qama_           8 HNIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK----   80 (235)
T ss_dssp             HHHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC----
T ss_pred             HHHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc----
Confidence            34677788886 8899999999999999999999874  5899999999999999887766679999999986542    


Q ss_pred             hcCCCCCCccEEEEcCCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGvS  169 (413)
                         ++.....-|+-||.|+
T Consensus        81 ---~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          81 ---FPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             ---CCSSCCCEEEEECCGG
T ss_pred             ---ccccccceeeeeehhh
Confidence               1122344688999883

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00082  Score=61.50  Aligned_cols=81  Identities=16%  Similarity=0.026  Sum_probs=61.9

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCC-ChHHHHHhcCCCCCCccE
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFS-DLPNILKNMNNNFNSIDG  161 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs-~l~~~L~~~~~~~~~VDG  161 (413)
                      ...++|.+.|.|-=+..|+.+.|+.+++|+|+|++|++.|+++.+..   .|+.+++.+.. .+...+...  ..+.+|.
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~--~~~~fD~  139 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEE--SEIIYDF  139 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTC--CSCCBSE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhc--ccCceeE
Confidence            45799999999999999999899999999999999999999876543   38888876543 222222221  1246899


Q ss_pred             EEEcCCC
Q psy7191         162 IIMDVGI  168 (413)
Q Consensus       162 ILfDLGv  168 (413)
                      |+-|-.|
T Consensus       140 ivsNPPY  146 (250)
T d2h00a1         140 CMCNPPF  146 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecCcc
Confidence            9988887

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.93  E-value=0.00083  Score=63.97  Aligned_cols=78  Identities=12%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-C-CeEEEecC-CCChHHHHHhcCCCCCC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-P-RLVPVYGK-FSDLPNILKNMNNNFNS  158 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~-rv~~i~~n-Fs~l~~~L~~~~~~~~~  158 (413)
                      ..+..++|+.+|.||-|.+.+..  .++|+++|.++.|++.|+++.+  .. + ++.+++++ |..+...... +   ..
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~-~---~~  204 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR-G---ST  204 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH-T---CC
T ss_pred             cCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc-C---CC
Confidence            35779999999999999988754  4689999999999999998654  23 2 78999876 4444443332 2   36


Q ss_pred             ccEEEEcCC
Q psy7191         159 IDGIIMDVG  167 (413)
Q Consensus       159 VDGILfDLG  167 (413)
                      +|.|++|-.
T Consensus       205 fD~IilDPP  213 (309)
T d2igta1         205 YDIILTDPP  213 (309)
T ss_dssp             BSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999996633

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0015  Score=56.74  Aligned_cols=79  Identities=13%  Similarity=0.060  Sum_probs=60.8

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC--CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND--PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~--~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      ++..++|+.+|.|.-+...|++-. .+|+++|.|+.|++.++++++..  .++.+++++   .-+++...+   ..+|.|
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d---~~~~l~~~~---~~fDlI  115 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSN---AMSFLAQKG---TPHNIV  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSC---HHHHHSSCC---CCEEEE
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeec---ccccccccc---cccCEE
Confidence            467999999999988887777643 48999999999999998876543  378888765   345565433   469999


Q ss_pred             EEcCCCCc
Q psy7191         163 IMDVGISD  170 (413)
Q Consensus       163 LfDLGvSS  170 (413)
                      ++|-.|..
T Consensus       116 f~DPPY~~  123 (183)
T d2fpoa1         116 FVDPPFRR  123 (183)
T ss_dssp             EECCSSST
T ss_pred             EEcCcccc
Confidence            99988753

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.0012  Score=58.91  Aligned_cols=90  Identities=9%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCCh-H
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDL-P  146 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l-~  146 (413)
                      +|...+....    ...+|+...|.|.-|..+++.++ +++|+++|.|++.++.|++.++.  +. +++++.++..++ +
T Consensus        47 lL~~lv~~~k----pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          47 IMDAVIREYS----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP  122 (214)
T ss_dssp             HHHHHHHHHC----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHhhC----CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence            3444444443    46999999999988888887775 69999999999999999886653  33 899999988764 3


Q ss_pred             HHHHhcCCCCCCccEEEEcCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLG  167 (413)
                      ++....+.  ..+|.|++|-.
T Consensus       123 ~l~~~~~~--~~~D~ifiD~~  141 (214)
T d2cl5a1         123 QLKKKYDV--DTLDMVFLDHW  141 (214)
T ss_dssp             GHHHHSCC--CCEEEEEECSC
T ss_pred             chhhcccc--cccceeeeccc
Confidence            33333333  46999999843

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.00065  Score=62.19  Aligned_cols=81  Identities=16%  Similarity=0.193  Sum_probs=57.2

Q ss_pred             HhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC------CCeEEEecCCCChHHHHH
Q psy7191          77 ASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND------PRLVPVYGKFSDLPNILK  150 (413)
Q Consensus        77 i~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~------~rv~~i~~nFs~l~~~L~  150 (413)
                      ++.|. .++++.++|+.||.|.++..+++.  +..|+|+|.++.+|+.|+++....      .+..+...+|..++.-+.
T Consensus        49 ~~~l~-~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T d1xvaa_          49 LGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP  125 (292)
T ss_dssp             HHHHH-HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC
T ss_pred             HHHhh-hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC
Confidence            44454 556789999999999999999876  458999999999999998754321      145556666666553221


Q ss_pred             hcCCCCCCccEEEE
Q psy7191         151 NMNNNFNSIDGIIM  164 (413)
Q Consensus       151 ~~~~~~~~VDGILf  164 (413)
                         . ...+|.|+.
T Consensus       126 ---~-~~~fd~v~~  135 (292)
T d1xvaa_         126 ---A-GDGFDAVIC  135 (292)
T ss_dssp             ---C-TTCEEEEEE
T ss_pred             ---C-CCCceEEEE
Confidence               1 236887774

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.87  E-value=0.00067  Score=64.38  Aligned_cols=78  Identities=14%  Similarity=0.040  Sum_probs=57.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC--CCeEEEecCC-CChHHHHHhcCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND--PRLVPVYGKF-SDLPNILKNMNNNFN  157 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~--~rv~~i~~nF-s~l~~~L~~~~~~~~  157 (413)
                      ..+|..++|+.+|.||-|.+.+.. ....|+++|.++.|++.++++.+  ..  .++++++++- ..+....+ .+   .
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~-~~---~  216 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR-HH---L  216 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH-TT---C
T ss_pred             hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHh-hc---C
Confidence            457899999999999999776543 33589999999999999988654  22  3789998773 33333332 22   3


Q ss_pred             CccEEEEc
Q psy7191         158 SIDGIIMD  165 (413)
Q Consensus       158 ~VDGILfD  165 (413)
                      ++|.|++|
T Consensus       217 ~fD~Ii~D  224 (317)
T d2b78a2         217 TYDIIIID  224 (317)
T ss_dssp             CEEEEEEC
T ss_pred             CCCEEEEc
Confidence            69999976

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.55  E-value=0.0017  Score=58.49  Aligned_cols=63  Identities=14%  Similarity=0.109  Sum_probs=49.9

Q ss_pred             cCCcccc-chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          65 YNKKYPR-TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        65 y~~H~pv-ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      |-.-.|+ |++.+|...  ..+|++++|..+|.|  |+++....-+-+-||+|+++++++.|++++..
T Consensus       231 hpt~kP~~L~~rlI~~~--s~~gdiVlDpF~GSG--TT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         231 HPARFPAKLPEFFIRML--TEPDDLVVDIFGGSN--TTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CSSCCCTHHHHHHHHHH--CCTTCEEEETTCTTC--HHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCcCchHHHHHhhhhc--ccCCCEEEecCCCCc--HHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            4444565 555666655  578999999999999  88887765566889999999999999988765

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.002  Score=55.26  Aligned_cols=63  Identities=17%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEE
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGII  163 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGIL  163 (413)
                      .+++.++|.-||.|..+..+.      +++|+|.++.+++.|+++     ++.++++++.++.       ...+.+|.|+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~-------~~~~~fD~I~   96 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----GVFVLKGTAENLP-------LKDESFDFAL   96 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----TCEEEECBTTBCC-------SCTTCEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----ccccccccccccc-------cccccccccc
Confidence            456789999999998877662      468999999999999864     4788888887663       2235789998


Q ss_pred             E
Q psy7191         164 M  164 (413)
Q Consensus       164 f  164 (413)
                      .
T Consensus        97 ~   97 (208)
T d1vlma_          97 M   97 (208)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.30  E-value=0.0022  Score=55.21  Aligned_cols=83  Identities=12%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCC-CEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhc
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGN-VKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNM  152 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~-g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~  152 (413)
                      +.+++.+. ++++..++|.++|.|+-..++++..+. ..++|+|+|+.++..+       .+..+++++|-..+      
T Consensus         9 ~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~------   74 (223)
T d2ih2a1           9 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE------   74 (223)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC------
T ss_pred             HHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc------
Confidence            33555555 778899999999999999999988764 7899999998765332       24566777654321      


Q ss_pred             CCCCCCccEEEEcCCCCccC
Q psy7191         153 NNNFNSIDGIIMDVGISDSQ  172 (413)
Q Consensus       153 ~~~~~~VDGILfDLGvSS~Q  172 (413)
                        ....+|.|+.|-.+...+
T Consensus        75 --~~~~fd~ii~npP~~~~~   92 (223)
T d2ih2a1          75 --PGEAFDLILGNPPYGIVG   92 (223)
T ss_dssp             --CSSCEEEEEECCCCCCBS
T ss_pred             --cccccceecccCcccccc
Confidence              124689999877765443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.29  E-value=0.0028  Score=55.52  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=46.7

Q ss_pred             ccc-chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc
Q psy7191          69 YPR-TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA  130 (413)
Q Consensus        69 ~pv-ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~  130 (413)
                      .|+ |++.+|...  .++|++++|..+|.|  |+++....-+-+-||+|+|++.++.|++|++
T Consensus       197 kP~~L~~~lI~~~--s~~gd~VlDpF~GSG--TT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRAS--SNPNDLVLDCFMGSG--TTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHH--CCTTCEEEESSCTTC--HHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHh--CCCCCEEEECCCCch--HHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            665 455566665  478999999999999  8877766555688999999999999998874

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0062  Score=55.92  Aligned_cols=93  Identities=12%  Similarity=0.148  Sum_probs=72.3

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCCh--HH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDL--PN  147 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l--~~  147 (413)
                      +..++.+++.+. +.+++.+|..-.|.|.=|..|++..  .+|+|+|+|+..++..+++....++++++++++-.+  .+
T Consensus         7 ~~~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~   83 (252)
T d1qyra_           7 QFVIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHH
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccc
Confidence            345677888887 8889999999999999999999874  479999999999988877543345999999998743  44


Q ss_pred             HHHhcCCCCCCccEEEEcCCCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLGvS  169 (413)
                      +.+..+    ..-.|+-||.|+
T Consensus        84 ~~~~~~----~~~~vvgNlPY~  101 (252)
T d1qyra_          84 LAEKMG----QPLRVFGNLPYN  101 (252)
T ss_dssp             HHHHHT----SCEEEEEECCTT
T ss_pred             cccccC----CCeEEEecchHH
Confidence            444322    234688899884

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0037  Score=56.28  Aligned_cols=88  Identities=16%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhc----CC--CEEEEEeCCHHHHHHHHhhhcCCC-----CeEEEecCCCC
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENI----GN--VKVICLDRDKESFEKAKTLAANDP-----RLVPVYGKFSD  144 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~----p~--g~Via~DrD~~Al~~Ak~ll~~~~-----rv~~i~~nFs~  144 (413)
                      .+..|...+++-.++|.-||.|..|..||+.+    ++  +.++|+|.++.+++.|+++.+..+     ++.+.+..+..
T Consensus        31 ~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~  110 (280)
T d1jqea_          31 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSE  110 (280)
T ss_dssp             HTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHH
T ss_pred             HHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence            34444323444469999999999999998764    33  477999999999999988765432     34445554443


Q ss_pred             hHHHHHhcCCCCCCccEEEE
Q psy7191         145 LPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus       145 l~~~L~~~~~~~~~VDGILf  164 (413)
                      ....... ..+.+++|.|++
T Consensus       111 ~~~~~~~-~~~~~~fD~I~~  129 (280)
T d1jqea_         111 YQSRMLE-KKELQKWDFIHM  129 (280)
T ss_dssp             HHHHHTT-SSSCCCEEEEEE
T ss_pred             hcchhcc-cCCCCceeEEEE
Confidence            3222221 233467999985

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.11  E-value=0.00095  Score=61.87  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC-----------CCCeEEEecCCCChHHHHHhcCCC
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN-----------DPRLVPVYGKFSDLPNILKNMNNN  155 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~-----------~~rv~~i~~nFs~l~~~L~~~~~~  155 (413)
                      ..++|||+|-|.++..+...  .++|++++++|......+..++.           ..|+++++++..   ++|...   
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~---~~L~~~---  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL---TALTDI---  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH---HHSTTC---
T ss_pred             CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH---HHHhcc---
Confidence            48999999999988887765  47899999999776554432211           127999988753   455543   


Q ss_pred             CCCccEEEEcCCC
Q psy7191         156 FNSIDGIIMDVGI  168 (413)
Q Consensus       156 ~~~VDGILfDLGv  168 (413)
                      ...+|.|.+|-=+
T Consensus       162 ~~~~DvIYlDPMF  174 (250)
T d2oyra1         162 TPRPQVVYLDPMF  174 (250)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence            2368999977554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.08  E-value=0.0041  Score=56.24  Aligned_cols=92  Identities=17%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             HHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--CC-CeEEEecCCCCh-HHHHH
Q psy7191          76 SASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--DP-RLVPVYGKFSDL-PNILK  150 (413)
Q Consensus        76 vi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~~-rv~~i~~nFs~l-~~~L~  150 (413)
                      .+..|......+.++....|.|.=|..|++.+| +|+|+.+|.|++..+.|++..+.  +. +++++.++..+. ++++.
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~  129 (227)
T d1susa1          50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHh
Confidence            344442233457899999999987778877886 69999999999999999987653  33 899999987653 44443


Q ss_pred             hcCCCCCCccEEEEcCCC
Q psy7191         151 NMNNNFNSIDGIIMDVGI  168 (413)
Q Consensus       151 ~~~~~~~~VDGILfDLGv  168 (413)
                      . +...+.+|.|++|.-=
T Consensus       130 ~-~~~~~~fD~iFiDa~k  146 (227)
T d1susa1         130 D-EKNHGSYDFIFVDADK  146 (227)
T ss_dssp             C-GGGTTCBSEEEECSCS
T ss_pred             c-cccCCceeEEEeccch
Confidence            2 1112469999988543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.016  Score=50.34  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH---HHHhcCCCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN---ILKNMNNNFNS  158 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~---~L~~~~~~~~~  158 (413)
                      .+++..+||.+++.||-++.+++..+ .++|+|+|..|.         +..+.+.++++++.+...   ......  ..+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~i~~~~~~~~d~~~~~~~~~~~~~~~--~~~   88 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DPIVGVDFLQGDFRDELVMKALLERVG--DSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CCCTTEEEEESCTTSHHHHHHHHHHHT--TCC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cccCCceEeecccccchhhhhhhhhcc--Ccc
Confidence            46788999999999999999999874 599999997752         123478999999977442   222222  246


Q ss_pred             ccEEEEcCCC
Q psy7191         159 IDGIIMDVGI  168 (413)
Q Consensus       159 VDGILfDLGv  168 (413)
                      +|.|+-|.+.
T Consensus        89 ~DlVlSD~ap   98 (180)
T d1ej0a_          89 VQVVMSDMAP   98 (180)
T ss_dssp             EEEEEECCCC
T ss_pred             eeEEEecccc
Confidence            9999988774

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.78  E-value=0.0037  Score=55.41  Aligned_cols=59  Identities=19%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             ccc-chHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          69 YPR-TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        69 ~pv-ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      .|+ |++.+|...  ..+|++++|..+|.|  |+++....-+-+.||+|+|+..++.|+++++.
T Consensus       192 kP~~L~~~~I~~~--s~~gdiVLDpF~GSG--TT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         192 KPAAVIERLVRAL--SHPGSTVLDFFAGSG--VTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             CCHHHHHHHHHHH--SCTTCEEEETTCTTC--HHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHhh--cCCCCEEEecCCCCc--HHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            455 566666666  478999999999999  77776654455889999999999999887753

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.015  Score=51.92  Aligned_cols=85  Identities=12%  Similarity=0.117  Sum_probs=66.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcC-CCEEEEEeCCHHHHHHHHhhhcC--C-CCeEEEecCCCC-hHHHHHhcCCCCCCc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIG-NVKVICLDRDKESFEKAKTLAAN--D-PRLVPVYGKFSD-LPNILKNMNNNFNSI  159 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p-~g~Via~DrD~~Al~~Ak~ll~~--~-~rv~~i~~nFs~-l~~~L~~~~~~~~~V  159 (413)
                      ..+.+++...|.|.=|..|++.+| +|+|+++|.|++..+.|++.++.  + +++.++.++..+ +++++....  .+.+
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~--~~~f  136 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE--AGTF  136 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC--TTCE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcc--cCCc
Confidence            457889999999988888888886 69999999999999999987653  3 389999988654 455554322  2479


Q ss_pred             cEEEEcCCCCcc
Q psy7191         160 DGIIMDVGISDS  171 (413)
Q Consensus       160 DGILfDLGvSS~  171 (413)
                      |.|.+|..-+.+
T Consensus       137 D~ifiD~dk~~y  148 (219)
T d2avda1         137 DVAVVDADKENC  148 (219)
T ss_dssp             EEEEECSCSTTH
T ss_pred             cEEEEeCCHHHH
Confidence            999998766544

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.029  Score=52.13  Aligned_cols=88  Identities=15%  Similarity=0.170  Sum_probs=71.0

Q ss_pred             ccchHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---CCeEEEecCCCChH
Q psy7191          70 PRTFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---PRLVPVYGKFSDLP  146 (413)
Q Consensus        70 pvll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~rv~~i~~nFs~l~  146 (413)
                      |..++.+++.+. +.+++.+|..--|.|.=|..||+..  .+|+|+++|+..++..++....+   .+++++++++-..+
T Consensus         7 ~~i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           7 PLIINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence            456677888886 8889999999999999999999884  58999999999999988776543   38999999886542


Q ss_pred             HHHHhcCCCCCCccEEEEcCCCC
Q psy7191         147 NILKNMNNNFNSIDGIIMDVGIS  169 (413)
Q Consensus       147 ~~L~~~~~~~~~VDGILfDLGvS  169 (413)
                             +  ...+-|+-||.|+
T Consensus        84 -------~--~~~~~vV~NLPY~   97 (278)
T d1zq9a1          84 -------L--PFFDTCVANLPYQ   97 (278)
T ss_dssp             -------C--CCCSEEEEECCGG
T ss_pred             -------h--hhhhhhhcchHHH
Confidence                   2  2356788888884

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.51  E-value=0.019  Score=53.30  Aligned_cols=74  Identities=26%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc--CC-CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA--ND-PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~--~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .+|.+++|..+|.|..|....+ ....+|+|+|.++.+ ..|++..+  .. .++++++++..++.       ++.+++|
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~-~Ga~~V~avd~s~~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~-------~~~~~~D  107 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAK-HGAKHVIGVDMSSII-EMAKELVELNGFSDKITLLRGKLEDVH-------LPFPKVD  107 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHH-TCCSEEEEEESSTHH-HHHHHHHHHTTCTTTEEEEESCTTTSC-------CSSSCEE
T ss_pred             CCcCEEEEeCCCCCHHHHHHHH-hCCCEEEEEeCCHHH-HHHHHHHHHhCccccceEEEeehhhcc-------Cccccee
Confidence            3688999999999988876554 444599999999854 45554332  22 38999999987762       2335799


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|+.++
T Consensus       108 ~i~se~  113 (328)
T d1g6q1_         108 IIISEW  113 (328)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            998653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.26  E-value=0.0037  Score=54.88  Aligned_cols=47  Identities=15%  Similarity=0.038  Sum_probs=38.2

Q ss_pred             CCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC
Q psy7191          84 SDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN  131 (413)
Q Consensus        84 ~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~  131 (413)
                      .++..++|..||.|+|+..++... ...|+|+|.++.+++.|+++++.
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~   96 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKK   96 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhh
Confidence            457799999999999997655432 23799999999999999987654

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.045  Score=50.14  Aligned_cols=75  Identities=17%  Similarity=0.284  Sum_probs=54.7

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-CC-CCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-ND-PRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      ..+|.+++|.-+|.|.-+...++. ...+|+|+|..+.+...++...+ .. .++++++++..++.       .+..++|
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-------~~~~~~D  104 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-------LPVEKVD  104 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-------CSCSCEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc-------Cccccce
Confidence            346889999999999888776665 33589999999988754443222 23 38999999887763       2235799


Q ss_pred             EEEEc
Q psy7191         161 GIIMD  165 (413)
Q Consensus       161 GILfD  165 (413)
                      .|+.+
T Consensus       105 ~Ivse  109 (311)
T d2fyta1         105 VIISE  109 (311)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99854

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.06  E-value=0.042  Score=50.71  Aligned_cols=75  Identities=20%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhh-cCC-CCeEEEecCCCChHHHHHhcCCCCCCccEE
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLA-AND-PRLVPVYGKFSDLPNILKNMNNNFNSIDGI  162 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll-~~~-~rv~~i~~nFs~l~~~L~~~~~~~~~VDGI  162 (413)
                      +|.+++|.-+|.|..|...++. ...+|+|+|.++.+....+... ... +++++++++..+++       .+.+++|.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~-------~~~~~~D~i  104 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVEKVDII  104 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSSCEEEE
T ss_pred             CcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcc-------cccceeEEE
Confidence            6889999999999888766654 3458999999987644333222 223 38999999987763       223579999


Q ss_pred             EEcCC
Q psy7191         163 IMDVG  167 (413)
Q Consensus       163 LfDLG  167 (413)
                      +.+..
T Consensus       105 vs~~~  109 (316)
T d1oria_         105 ISEWM  109 (316)
T ss_dssp             EECCC
T ss_pred             eeeee
Confidence            86644

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=94.99  E-value=0.048  Score=51.11  Aligned_cols=76  Identities=26%  Similarity=0.322  Sum_probs=59.9

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc-------CCCCeEEEecCCCChHHHHHhcCCCCCC
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA-------NDPRLVPVYGKFSDLPNILKNMNNNFNS  158 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~-------~~~rv~~i~~nFs~l~~~L~~~~~~~~~  158 (413)
                      .+-++.+-+|.|+=..++|+..|..+|.++|+||+.++.+++.+.       ..+|++++.++..   ++++..+   .+
T Consensus        78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~---~~l~~~~---~~  151 (312)
T d1uira_          78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR---AYLERTE---ER  151 (312)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH---HHHHHCC---CC
T ss_pred             cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH---HHhhhcC---Cc
Confidence            356788999999999999987677899999999999999987542       1249999977654   5666543   47


Q ss_pred             ccEEEEcCC
Q psy7191         159 IDGIIMDVG  167 (413)
Q Consensus       159 VDGILfDLG  167 (413)
                      +|.|+.|+-
T Consensus       152 yDvIi~D~~  160 (312)
T d1uira_         152 YDVVIIDLT  160 (312)
T ss_dssp             EEEEEEECC
T ss_pred             ccEEEEeCC
Confidence            999999973

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.09  Score=49.19  Aligned_cols=85  Identities=13%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             hccCCcc---ccchHhHHhccCCCC------CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCC
Q psy7191          63 DIYNKKY---PRTFQTSASGLNDSS------DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDP  133 (413)
Q Consensus        63 n~y~~H~---pvll~evi~~L~~~~------~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~  133 (413)
                      ..||+|+   |-+++.+++.+. +.      .+..+|++--|.|.=|.+||+...--+|++++.|+...+.-+++.+. +
T Consensus        13 k~~GQnfL~d~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-~   90 (322)
T d1i4wa_          13 FFYGFKYLWNPTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-S   90 (322)
T ss_dssp             CGGGCCCBCCHHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-S
T ss_pred             hhccccccCCHHHHHHHHHHhc-CCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-C
Confidence            4677775   446677777764 32      46789999999999999999985324899999999999887776542 5


Q ss_pred             CeEEEecCCCChHHHH
Q psy7191         134 RLVPVYGKFSDLPNIL  149 (413)
Q Consensus       134 rv~~i~~nFs~l~~~L  149 (413)
                      +++++++++-.++.+.
T Consensus        91 ~~~ii~~D~l~~~~~~  106 (322)
T d1i4wa_          91 PLQILKRDPYDWSTYS  106 (322)
T ss_dssp             SCEEECSCTTCHHHHH
T ss_pred             CcEEEeCchhhcchhh
Confidence            8999999998876543

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.40  E-value=0.093  Score=48.07  Aligned_cols=74  Identities=23%  Similarity=0.277  Sum_probs=57.2

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------------CCCCeEEEecCCCChHHHHHhcC
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------------NDPRLVPVYGKFSDLPNILKNMN  153 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------------~~~rv~~i~~nFs~l~~~L~~~~  153 (413)
                      ..-++-+-+|.|+=..++|.. |..+|.++|+||++++.|++.+.            ..+|++++.++-   ..++++. 
T Consensus        73 p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da---~~~l~~~-  147 (276)
T d1mjfa_          73 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG---FEFIKNN-  147 (276)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH---HHHHHHC-
T ss_pred             CceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH---HHHHhcc-
Confidence            457788999999988888864 55799999999999999987442            135999998765   3566652 


Q ss_pred             CCCCCccEEEEcCC
Q psy7191         154 NNFNSIDGIIMDVG  167 (413)
Q Consensus       154 ~~~~~VDGILfDLG  167 (413)
                         +++|.|+.|+-
T Consensus       148 ---~~yDvIi~D~~  158 (276)
T d1mjfa_         148 ---RGFDVIIADST  158 (276)
T ss_dssp             ---CCEEEEEEECC
T ss_pred             ---CCCCEEEEeCC
Confidence               46999998874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.31  E-value=0.085  Score=48.48  Aligned_cols=75  Identities=24%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc----C--CCCeEEEecCCCChHHHHHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA----N--DPRLVPVYGKFSDLPNILKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~----~--~~rv~~i~~nFs~l~~~L~~~~~~~~~V  159 (413)
                      .+-++-+-.|.|+=+..+|+..|..+|..+|+||+.++.|++.+.    .  .+|++++.++-   ..++++.+   .++
T Consensus        76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~---~~~l~~~~---~~y  149 (274)
T d1iy9a_          76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG---FMHIAKSE---NQY  149 (274)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS---HHHHHTCC---SCE
T ss_pred             cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechH---HHHHhhcC---CCC
Confidence            357788899999989999876666899999999999999987542    1  24999988754   45666543   479


Q ss_pred             cEEEEcC
Q psy7191         160 DGIIMDV  166 (413)
Q Consensus       160 DGILfDL  166 (413)
                      |.|+.|+
T Consensus       150 DvIi~D~  156 (274)
T d1iy9a_         150 DVIMVDS  156 (274)
T ss_dssp             EEEEESC
T ss_pred             CEEEEcC
Confidence            9999996

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.47  E-value=0.09  Score=50.45  Aligned_cols=89  Identities=13%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC-------------CCEEEEEeCCHHHHHHHHhh--hcCC--CCe
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG-------------NVKVICLDRDKESFEKAKTL--AAND--PRL  135 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p-------------~g~Via~DrD~~Al~~Ak~l--l~~~--~rv  135 (413)
                      .+.+++.+. ++++..++|-|||.||--.+.++...             ...++|+|+|+.+...|+-.  +...  ...
T Consensus       151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            455555555 88899999999999999888877652             12499999999999998753  3332  245


Q ss_pred             EEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCc
Q psy7191         136 VPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISD  170 (413)
Q Consensus       136 ~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS  170 (413)
                      .+.++++-.      ..  ....+|.||.|-.++.
T Consensus       230 ~i~~~d~l~------~~--~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         230 PIVCEDSLE------KE--PSTLVDVILANPPFGT  256 (425)
T ss_dssp             SEEECCTTT------SC--CSSCEEEEEECCCSSC
T ss_pred             eeecCchhh------hh--cccccceEEecCCCCC
Confidence            556665532      11  2347999999988854

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=93.45  E-value=0.15  Score=43.47  Aligned_cols=81  Identities=19%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCC---C-CeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAND---P-RLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~---~-rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      .+..++|+-+|.|.=+..-|++- -..|+.+|.|+.|++..+++++..   . ...++..+   ...++..... ...+|
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d---~~~~l~~~~~-~~~fD  117 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS---SLDFLKQPQN-QPHFD  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC---HHHHTTSCCS-SCCEE
T ss_pred             ccceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhccccccccccccc---cccccccccc-CCccc
Confidence            46789999999998888888774 348999999999999988765432   2 45555443   2344443322 24699


Q ss_pred             EEEEcCCCCc
Q psy7191         161 GIIMDVGISD  170 (413)
Q Consensus       161 GILfDLGvSS  170 (413)
                      .|++|-.|+.
T Consensus       118 lIFlDPPY~~  127 (183)
T d2ifta1         118 VVFLDPPFHF  127 (183)
T ss_dssp             EEEECCCSSS
T ss_pred             EEEechhHhh
Confidence            9999988854

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.024  Score=56.36  Aligned_cols=94  Identities=10%  Similarity=-0.049  Sum_probs=61.4

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcC------------------CCEEEEEeCCHHHHHHHHhhh--cCCC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIG------------------NVKVICLDRDKESFEKAKTLA--ANDP  133 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p------------------~g~Via~DrD~~Al~~Ak~ll--~~~~  133 (413)
                      +-+++.+. ++++..++|.|||.||--.+..+.+.                  ...++|+|.|+.+...|+-.+  ....
T Consensus       154 ~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~  232 (524)
T d2ar0a1         154 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE  232 (524)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred             Hhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc
Confidence            44445554 88889999999999998877665431                  125899999999999887532  2211


Q ss_pred             -----CeEEEecCCCChHHHHHhcCCCCCCccEEEEcCCCCccCcc
Q psy7191         134 -----RLVPVYGKFSDLPNILKNMNNNFNSIDGIIMDVGISDSQAN  174 (413)
Q Consensus       134 -----rv~~i~~nFs~l~~~L~~~~~~~~~VDGILfDLGvSS~Qld  174 (413)
                           .-.+..+++-.-+.  ..    ..++|.||.|-.++...-.
T Consensus       233 ~~i~~~~~~~~~~~l~~d~--~~----~~kfD~Ii~NPPfg~~~~~  272 (524)
T d2ar0a1         233 GNLDHGGAIRLGNTLGSDG--EN----LPKAHIVATNPPFGSAAGT  272 (524)
T ss_dssp             CBGGGTBSEEESCTTSHHH--HT----SCCEEEEEECCCCTTCSSC
T ss_pred             ccccccchhhhhhhhhhcc--cc----cccceeEEecCCccccccc
Confidence                 12333444333221  11    2369999999999876654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.20  E-value=0.16  Score=47.22  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------CCCCeEEEecCCCChHHHHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------NDPRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------~~~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      ++| +-++=+-+|.||=..++|+..|..+|.++|+||.+++.+++.+.      ..+|++++.++-   .+++++..   
T Consensus        88 ~~p-k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da---~~~l~~~~---  160 (295)
T d1inla_          88 PNP-KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG---AEYVRKFK---  160 (295)
T ss_dssp             SSC-CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHGGGCS---
T ss_pred             CCC-ceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhH---HHHHhcCC---
Confidence            344 45666778999989999877667899999999999999987432      135999987654   45676643   


Q ss_pred             CCccEEEEcC
Q psy7191         157 NSIDGIIMDV  166 (413)
Q Consensus       157 ~~VDGILfDL  166 (413)
                      .++|.|+.|+
T Consensus       161 ~~yDvIi~D~  170 (295)
T d1inla_         161 NEFDVIIIDS  170 (295)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCCCEEEEcC
Confidence            4799999985

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.19  Score=46.41  Aligned_cols=77  Identities=18%  Similarity=0.237  Sum_probs=59.0

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------CCCCeEEEecCCCChHHHHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------NDPRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------~~~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      +.| +.++=+-.|.||=...+++..+..+|..+|+||+.++.|++-+.      ..+|++++.++   -.++|+..   .
T Consensus        77 ~~p-k~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~D---a~~~l~~~---~  149 (285)
T d2o07a1          77 PNP-RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD---GFEFMKQN---Q  149 (285)
T ss_dssp             SSC-CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC---HHHHHHTC---S
T ss_pred             cCc-CeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEcc---HHHHHhcC---C
Confidence            344 46677899999999999876666899999999999999987542      12599999766   34566653   3


Q ss_pred             CCccEEEEcC
Q psy7191         157 NSIDGIIMDV  166 (413)
Q Consensus       157 ~~VDGILfDL  166 (413)
                      .++|.|+.|+
T Consensus       150 ~~yDvIi~D~  159 (285)
T d2o07a1         150 DAFDVIITDS  159 (285)
T ss_dssp             SCEEEEEEEC
T ss_pred             CCCCEEEEcC
Confidence            4799999886

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=92.92  E-value=0.02  Score=52.98  Aligned_cols=44  Identities=11%  Similarity=0.037  Sum_probs=35.7

Q ss_pred             hHhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeC
Q psy7191          73 FQTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDR  117 (413)
Q Consensus        73 l~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~Dr  117 (413)
                      |.|..+-.. .+|++.+||..+|.||-|....+..+...|.|+|+
T Consensus        55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i   98 (257)
T d2p41a1          55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK   98 (257)
T ss_dssp             HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred             HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence            455555554 78899999999999999999988765567888887

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.04  Score=49.47  Aligned_cols=83  Identities=14%  Similarity=0.035  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHhHHhh--hhhccCCccccchHhHHhccC-CCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHH
Q psy7191          45 EEEETLKKNLASLKRL--SEDIYNKKYPRTFQTSASGLN-DSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKES  121 (413)
Q Consensus        45 ~~~e~~~~~~~sl~~~--~~n~y~~H~pvll~evi~~L~-~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~A  121 (413)
                      +..++++.+|.+....  ....+   .+-++.+.-+.+. ....+..++|.-||.|.++...+.... .+|+|+|.++.+
T Consensus        14 ~~~~Y~~~~y~~~~~~~~~~~~~---~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~   89 (263)
T d2g72a1          14 EPRAYLRNNYAPPRGDLCNPNGV---GPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVN   89 (263)
T ss_dssp             CHHHHHHHHHSTTTTCCSSTTSH---HHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHH
T ss_pred             CHHHHHHHHhCcCcccchhhhhh---hhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHH
Confidence            4566888888654321  11111   1333444444332 133578999999999988865554432 489999999999


Q ss_pred             HHHHHhhhcC
Q psy7191         122 FEKAKTLAAN  131 (413)
Q Consensus       122 l~~Ak~ll~~  131 (413)
                      ++.+++.+..
T Consensus        90 i~~~~~~~~~   99 (263)
T d2g72a1          90 RQELGRWLQE   99 (263)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhc
Confidence            9999887643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.41  E-value=0.28  Score=46.07  Aligned_cols=74  Identities=28%  Similarity=0.312  Sum_probs=58.6

Q ss_pred             CEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC------CCCeEEEecCCCChHHHHHhcCCCCCCcc
Q psy7191          87 VTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN------DPRLVPVYGKFSDLPNILKNMNNNFNSID  160 (413)
Q Consensus        87 ~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~------~~rv~~i~~nFs~l~~~L~~~~~~~~~VD  160 (413)
                      +-++-+-.|.||=...+|+..|-.+|..+|+|++.++.+++-+..      .+|++++.++.   .+++++..   .++|
T Consensus       108 k~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da---~~~l~~~~---~~yD  181 (312)
T d2b2ca1         108 KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG---FEFLKNHK---NEFD  181 (312)
T ss_dssp             CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH---HHHHHHCT---TCEE
T ss_pred             CeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH---HHHHHhCC---CCCC
Confidence            567889999999999999765667999999999999999885532      25999997764   35676542   4799


Q ss_pred             EEEEcC
Q psy7191         161 GIIMDV  166 (413)
Q Consensus       161 GILfDL  166 (413)
                      .|+.|+
T Consensus       182 vII~D~  187 (312)
T d2b2ca1         182 VIITDS  187 (312)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            999884

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.74  E-value=0.13  Score=46.10  Aligned_cols=64  Identities=20%  Similarity=0.202  Sum_probs=47.1

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF  142 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nF  142 (413)
                      .++++.+......+.+||.-.|.|..+.+|++++|+.+++.+|. |.+++.+    ....|+.++-++|
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~ri~~~~gd~  133 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA----PPLSGIEHVGGDM  133 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCCTTEEEEECCT
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc----CCCCCeEEecCCc
Confidence            34444442124557999999999999999999999999999998 5554322    1124888888886

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.22  E-value=0.27  Score=45.37  Aligned_cols=79  Identities=24%  Similarity=0.296  Sum_probs=56.4

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhc------CCCCeEEEecCCCChHHHHHhcCCCC
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAA------NDPRLVPVYGKFSDLPNILKNMNNNF  156 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~------~~~rv~~i~~nFs~l~~~L~~~~~~~  156 (413)
                      ++|. .++=+-.|.||=..++|+..|-.+|.++|+|++.++.+++-+.      ..+|++++.++   -.+++.+..  .
T Consensus        79 ~~pk-~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D---a~~~l~~~~--~  152 (290)
T d1xj5a_          79 PNPK-KVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD---GVAFLKNAA--E  152 (290)
T ss_dssp             SCCC-EEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC---HHHHHHTSC--T
T ss_pred             CCCc-ceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc---HHHHHhhcc--c
Confidence            4443 4555778888888888876566799999999999999987431      12499988764   234555432  2


Q ss_pred             CCccEEEEcCC
Q psy7191         157 NSIDGIIMDVG  167 (413)
Q Consensus       157 ~~VDGILfDLG  167 (413)
                      +++|.|+.|+-
T Consensus       153 ~~yDvIi~D~~  163 (290)
T d1xj5a_         153 GSYDAVIVDSS  163 (290)
T ss_dssp             TCEEEEEECCC
T ss_pred             cCccEEEEcCC
Confidence            47999998863

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=89.95  E-value=0.14  Score=45.81  Aligned_cols=53  Identities=25%  Similarity=0.379  Sum_probs=43.2

Q ss_pred             CCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCC
Q psy7191          86 DVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFS  143 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs  143 (413)
                      ...+||.-.|.|..+.++++++|+.+++.+|. |.+++.+    ....|++++-++|-
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~rv~~~~gD~f  133 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SGSNNLTYVGGDMF  133 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCBTTEEEEECCTT
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cccCceEEEecCcc
Confidence            46899999999999999999999999999998 5555433    12248999988874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.32  E-value=1.3  Score=38.99  Aligned_cols=83  Identities=16%  Similarity=0.194  Sum_probs=60.0

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHH---HHHhcCCCCCCc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPN---ILKNMNNNFNSI  159 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~---~L~~~~~~~~~V  159 (413)
                      |+++| .|=|++|==.++.+.+  .+.+|+..|++++.++.+.+.++... ++..+..+.++-+.   ++++.--..+.+
T Consensus         5 gK~al-ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           5 GKVCL-VTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            55555 7888898888888776  35799999999999998876665544 89999999887542   222211012469


Q ss_pred             cEEEEcCCCC
Q psy7191         160 DGIIMDVGIS  169 (413)
Q Consensus       160 DGILfDLGvS  169 (413)
                      |.++-+.|+.
T Consensus        84 DilVnnaG~~   93 (260)
T d1zema1          84 DFLFNNAGYQ   93 (260)
T ss_dssp             CEEEECCCCC
T ss_pred             Ceehhhhccc
Confidence            9999888863

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=87.62  E-value=0.24  Score=44.36  Aligned_cols=86  Identities=16%  Similarity=0.214  Sum_probs=55.6

Q ss_pred             chHhHHhccCCCCCCCEEEEEecCCchhHHHHHH---hc-CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHH
Q psy7191          72 TFQTSASGLNDSSDDVTMIDMTYGDGNHTRLILE---NI-GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPN  147 (413)
Q Consensus        72 ll~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe---~~-p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~  147 (413)
                      +++|.+..+.   | ..+|-+-.+.||=+..+.+   .. ++++|+|+|+|+.....+.   ...++++++.++..+...
T Consensus        71 ~~~eli~~~K---P-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---~~~~~I~~i~gDs~~~~~  143 (232)
T d2bm8a1          71 VYHDMLWELR---P-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SDMENITLHQGDCSDLTT  143 (232)
T ss_dssp             HHHHHHHHHC---C-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GGCTTEEEEECCSSCSGG
T ss_pred             HHHHHHHHhC---C-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---ccccceeeeecccccHHH
Confidence            4567777664   3 5899999999975443332   23 5799999999975432221   124589999998766543


Q ss_pred             HHHhcCCCCCCccEEEEcCC
Q psy7191         148 ILKNMNNNFNSIDGIIMDVG  167 (413)
Q Consensus       148 ~L~~~~~~~~~VDGILfDLG  167 (413)
                       ++...  ....|.|++|=+
T Consensus       144 -~~~l~--~~~~dlIfID~~  160 (232)
T d2bm8a1         144 -FEHLR--EMAHPLIFIDNA  160 (232)
T ss_dssp             -GGGGS--SSCSSEEEEESS
T ss_pred             -HHHHH--hcCCCEEEEcCC
Confidence             22221  124788999954

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.47  E-value=1.2  Score=35.06  Aligned_cols=64  Identities=17%  Similarity=0.250  Sum_probs=48.7

Q ss_pred             cCCchhHHHHHHhcC--CCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHHHHhcCCCCCCccEEEE
Q psy7191          94 YGDGNHTRLILENIG--NVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNILKNMNNNFNSIDGIIM  164 (413)
Q Consensus        94 lG~GGHS~aILe~~p--~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~L~~~~~~~~~VDGILf  164 (413)
                      +|+|--...+.+.+.  +-.|+.+|.||+.++.+.+..    .+.+++++..+.+ .|.+.++.  ..|.++.
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~-~l~~~~i~--~a~~vv~   71 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIK-TLEDAGIE--DADMYIA   71 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHH-HHHHTTTT--TCSEEEE
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchh-hhhhcChh--hhhhhcc
Confidence            688888888887762  458999999999998765532    3667899988865 66677764  5888885

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=86.18  E-value=0.74  Score=40.60  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=45.2

Q ss_pred             HhHHhccCCCCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCC
Q psy7191          74 QTSASGLNDSSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKF  142 (413)
Q Consensus        74 ~evi~~L~~~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nF  142 (413)
                      ..+++..........+||.-.|.|..+.+|++++|+.+++.+|.-+. ++.+    ...+|+.++-++|
T Consensus        70 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~----~~~~r~~~~~~d~  133 (243)
T d1kyza2          70 KKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA----PSYPGVEHVGGDM  133 (243)
T ss_dssp             HHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC----CCCTTEEEEECCT
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc----ccCCceEEecccc
Confidence            34444442123457899999999999999999999999999999543 2221    1234777777776

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.02  E-value=1.9  Score=38.01  Aligned_cols=84  Identities=10%  Similarity=0.077  Sum_probs=60.4

Q ss_pred             CCCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCC
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNS  158 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~  158 (413)
                      .|+++| .|=|++|==.++.+.+  .+++|+..|++++.++.+.+.++.. .++.++..+.++-+.+   +++..-..+.
T Consensus        10 ~gK~al-ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_          10 DGKCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             TTCEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356665 8999999999998887  3579999999999998876554443 3889999999875432   2221001236


Q ss_pred             ccEEEEcCCCC
Q psy7191         159 IDGIIMDVGIS  169 (413)
Q Consensus       159 VDGILfDLGvS  169 (413)
                      +|.++-+.|++
T Consensus        89 iDilvnnAG~~   99 (255)
T d1fmca_          89 VDILVNNAGGG   99 (255)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEeeeCCcCC
Confidence            99999888863

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.60  E-value=0.97  Score=43.00  Aligned_cols=90  Identities=13%  Similarity=0.075  Sum_probs=62.2

Q ss_pred             CCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcC--CCC------------eEEEecCCCChHHHHH
Q psy7191          85 DDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAAN--DPR------------LVPVYGKFSDLPNILK  150 (413)
Q Consensus        85 ~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~--~~r------------v~~i~~nFs~l~~~L~  150 (413)
                      .+..++|+-.|.|+-+...+...+..+|++.|.++.|++.++++++.  ...            ...+..+..+...++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            35789999999999999877767766999999999999999876531  000            0122333344455665


Q ss_pred             hcCCCCCCccEEEEc-CCCCccCcc-CCC
Q psy7191         151 NMNNNFNSIDGIIMD-VGISDSQAN-STR  177 (413)
Q Consensus       151 ~~~~~~~~VDGILfD-LGvSS~Qld-~~R  177 (413)
                      +.+   ..+|.|-+| +|-++..|| +=|
T Consensus       125 ~~~---~~fDvIDiDPfGs~~pfldsAi~  150 (375)
T d2dula1         125 ERH---RYFHFIDLDPFGSPMEFLDTALR  150 (375)
T ss_dssp             HST---TCEEEEEECCSSCCHHHHHHHHH
T ss_pred             hhc---CcCCcccCCCCCCcHHHHHHHHH
Confidence            543   369999988 455666666 433

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.15  E-value=2.7  Score=36.83  Aligned_cols=80  Identities=18%  Similarity=0.213  Sum_probs=57.2

Q ss_pred             EEEecCCchhHHHHHHhc-C-CCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEE
Q psy7191          90 IDMTYGDGNHTRLILENI-G-NVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGII  163 (413)
Q Consensus        90 VDaTlG~GGHS~aILe~~-p-~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGIL  163 (413)
                      +=.|=|++|==.++.+.+ . ..+|+..|++++.++.+.+.+..+. ++..+..+.++-+.+   +++.--..+.+|.++
T Consensus        13 alITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilv   92 (251)
T d2c07a1          13 ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNVDILV   92 (251)
T ss_dssp             EEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCCCEEE
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCceeee
Confidence            336888888888888876 3 4799999999999998776665554 899999999875432   222100124699999


Q ss_pred             EcCCCC
Q psy7191         164 MDVGIS  169 (413)
Q Consensus       164 fDLGvS  169 (413)
                      .+-|+.
T Consensus        93 nnag~~   98 (251)
T d2c07a1          93 NNAGIT   98 (251)
T ss_dssp             ECCCCC
T ss_pred             eccccc
Confidence            887763

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=84.14  E-value=2.9  Score=36.73  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=58.8

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCCCeEEEecCCCChHHH---HHhcCCCCCCcc
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDPRLVPVYGKFSDLPNI---LKNMNNNFNSID  160 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i~~nFs~l~~~---L~~~~~~~~~VD  160 (413)
                      |+++| .|=|++|==.++.+.+  .+++|+.+|++++.++.+.+.+....++.++..+.++.+.+   +++.--..+.+|
T Consensus         6 gKval-ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           6 DKVAI-ITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TCEEE-EESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            34433 5888888888888876  45799999999999988766665545788889888875432   222100124699


Q ss_pred             EEEEcCCCC
Q psy7191         161 GIIMDVGIS  169 (413)
Q Consensus       161 GILfDLGvS  169 (413)
                      .++.+.|+.
T Consensus        85 ~lVnnAG~~   93 (268)
T d2bgka1          85 IMFGNVGVL   93 (268)
T ss_dssp             EEEECCCCC
T ss_pred             eeccccccc
Confidence            999999974

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.87  E-value=1.8  Score=35.03  Aligned_cols=83  Identities=16%  Similarity=0.093  Sum_probs=52.5

Q ss_pred             CCCCCEEEEEecCCchhHHHHHHhcCCCEEEEEeCCHHHHHHHHhhhcCCCCeEEE-ecCCCChHHHHHhcC-CCCCCcc
Q psy7191          83 SSDDVTMIDMTYGDGNHTRLILENIGNVKVICLDRDKESFEKAKTLAANDPRLVPV-YGKFSDLPNILKNMN-NNFNSID  160 (413)
Q Consensus        83 ~~~~~i~VDaTlG~GGHS~aILe~~p~g~Via~DrD~~Al~~Ak~ll~~~~rv~~i-~~nFs~l~~~L~~~~-~~~~~VD  160 (413)
                      +++++.++=.-.|+-|+....+.+.-+++|+++|++++-++.++++-.   ...++ .....+...+..... .....+|
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhcccccCCc
Confidence            677877766666777787776667666899999999999999987532   23333 333444443332210 0013578


Q ss_pred             EEEEcCCC
Q psy7191         161 GIIMDVGI  168 (413)
Q Consensus       161 GILfDLGv  168 (413)
                      .++=--|-
T Consensus       101 ~vid~~g~  108 (170)
T d1e3ja2         101 VTIDCSGN  108 (170)
T ss_dssp             EEEECSCC
T ss_pred             eeeecCCC
Confidence            77655665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=83.32  E-value=3.8  Score=35.90  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             CCEEEEEecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHH---H----HHhcCCC
Q psy7191          86 DVTMIDMTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPN---I----LKNMNNN  155 (413)
Q Consensus        86 ~~i~VDaTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~---~----L~~~~~~  155 (413)
                      |+++| .|=|++|==.+|.+.+  .+++|+..|++++.++.+.+.+... .++.++..+.++-+.   +    .++.+  
T Consensus         8 GK~al-ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~--   84 (259)
T d2ae2a_           8 GCTAL-VTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH--   84 (259)
T ss_dssp             TCEEE-EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT--
T ss_pred             CCEEE-EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC--
Confidence            56655 8889999888888877  3579999999999998876554433 478888888877443   2    23332  


Q ss_pred             CCCccEEEEcCCCC
Q psy7191         156 FNSIDGIIMDVGIS  169 (413)
Q Consensus       156 ~~~VDGILfDLGvS  169 (413)
                       .++|.++-+-|+.
T Consensus        85 -~~idilvnnAG~~   97 (259)
T d2ae2a_          85 -GKLNILVNNAGIV   97 (259)
T ss_dssp             -TCCCEEEECCCCC
T ss_pred             -CCceEEEECCcee
Confidence             2599999888874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=82.70  E-value=2.9  Score=36.53  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCC-CCeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191          92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAAND-PRLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~-~rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD  165 (413)
                      .|=|++|==.++.+.+  .+.+|+..|++++.++.+.+.+... .++.++..+.++.+.+   +++.--..+++|.++-+
T Consensus         6 ITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnn   85 (255)
T d1gega_           6 VTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNN   85 (255)
T ss_dssp             EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             EcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEEEec
Confidence            4778888888888876  4579999999999998876554433 4899999998875432   22210012469999988


Q ss_pred             CCCC
Q psy7191         166 VGIS  169 (413)
Q Consensus       166 LGvS  169 (413)
                      .|+.
T Consensus        86 AG~~   89 (255)
T d1gega_          86 AGVA   89 (255)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8873

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=82.37  E-value=4.3  Score=35.35  Aligned_cols=78  Identities=12%  Similarity=0.166  Sum_probs=56.3

Q ss_pred             EecCCchhHHHHHHhc--CCCEEEEEeCCHHHHHHHHhhhcCCC-CeEEEecCCCChHHH---HHhcCCCCCCccEEEEc
Q psy7191          92 MTYGDGNHTRLILENI--GNVKVICLDRDKESFEKAKTLAANDP-RLVPVYGKFSDLPNI---LKNMNNNFNSIDGIIMD  165 (413)
Q Consensus        92 aTlG~GGHS~aILe~~--p~g~Via~DrD~~Al~~Ak~ll~~~~-rv~~i~~nFs~l~~~---L~~~~~~~~~VDGILfD  165 (413)
                      .|=|.+|==.+|.+.+  .+.+|+..|++++.++.+.+.+.... ++.++..+.++.+.+   +++.--..+++|.++-+
T Consensus         7 ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnn   86 (257)
T d2rhca1           7 VTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNN   86 (257)
T ss_dssp             EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCSEEEEC
T ss_pred             EeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence            5778888888888876  45799999999999998765554444 899999999876533   22211012469999999


Q ss_pred             CCCC
Q psy7191         166 VGIS  169 (413)
Q Consensus       166 LGvS  169 (413)
                      -|+.
T Consensus        87 AG~~   90 (257)
T d2rhca1          87 AGRP   90 (257)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8873

>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: ComEA-like
domain: KIF22, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.06  E-value=0.19  Score=39.11  Aligned_cols=43  Identities=16%  Similarity=0.200  Sum_probs=35.5

Q ss_pred             HHhcCCHHHHHHHHHHcCCCchHHHHHHHHHHHHccCCCCCCHHHHHHH
Q psy7191         201 VLSAIDEVSLAKILKTYGEEKRSRQIARAIIETRYTFKKLERTRDLNEL  249 (413)
Q Consensus       201 vlN~~~e~eL~~I~~~YGEE~~a~rIA~aIv~~R~~~~~i~TT~eL~~i  249 (413)
                      .||+.+.++|..+ .-     -....|++||++|.+.+||.+..||..+
T Consensus        26 ~iNtAs~~eL~~l-pg-----ig~~~A~~II~yR~~~G~f~sledL~~V   68 (91)
T d2edua1          26 LLNEGSARDLRSL-QR-----IGPKKAQLIVGWRELHGPFSQVEDLERV   68 (91)
T ss_dssp             HHHHSCHHHHHHS-TT-----CCHHHHHHHHHHHHHHCCCSSGGGGGGS
T ss_pred             ccccCCHHHHhhC-CC-----CCHHHHHHHHHHHHHcCCCCCHHHHhcC
Confidence            6999999999775 22     3467899999999878899999998654