Psyllid ID: psy7216

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML
Secondary Structure (PSIPRED)
ccccEEEEEEEEccccccccccccccccEEEEcccccccccccEEEEEEEEEcccccccccEEEEEEccccEEEEEEEcccHHHHHHHHccccHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHcccccEEEEEEEcccccccccEEEEEEccccEEEEEEEEcccHHHHHHccccHHHHHHHHHc
Coil and Loop (DISEMBL)
MLFQGVKAVIAESYERIHRsnlvgmgiaplqflpgenadslkltgkerytiripddakphqklqvevddgrkFSVILRFDTEVDILYYKHGGILNYMIRKML
Flexible Loop (DISEMBL)
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYtiripddakphqklqvevddgrkfsVILRfdtevdilyykhggilNYMIRKML
Low Complexity Region (SEG)
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML
Disordered region (IsUnstruct)
***QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIP********LQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIR***
Disordered Region (DISOPRED)
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML
Disordered Region (DISEMBL)
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML
Disordered Region (DISPRO)
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P28271	889	Cytoplasmic aconitate hyd	yes	N/A	0.950	0.109	0.659	1e-35
P21399	889	Cytoplasmic aconitate hyd	yes	N/A	0.950	0.109	0.670	1e-35
Q0VCU1	889	Cytoplasmic aconitate hyd	yes	N/A	0.950	0.109	0.649	2e-35
Q90875	889	Cytoplasmic aconitate hyd	yes	N/A	0.950	0.109	0.659	2e-34
Q01059	889	Cytoplasmic aconitate hyd	yes	N/A	0.950	0.109	0.659	2e-34
Q23500	887	Probable cytoplasmic acon	yes	N/A	0.990	0.113	0.643	4e-34
Q63270	889	Cytoplasmic aconitate hyd	yes	N/A	0.950	0.109	0.639	6e-34
Q9SIB9	990	Aconitate hydratase 2, mi	yes	N/A	0.980	0.101	0.592	2e-30
O04916	616	Aconitate hydratase, cyto	N/A	N/A	0.980	0.162	0.582	3e-30
Q42669	764	Aconitate hydratase (Frag	N/A	N/A	0.990	0.132	0.596	5e-30

>sp|P28271|ACOC_MOUSE Cytoplasmic aconitate hydratase OS=Mus musculus GN=Aco1 PE=1 SV=3

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAV+AESYERIHRSNLVGMG+ PL++LPGE ADSL LTG+ERYTI IP+D KP   +Q
Sbjct: 791 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADSLGLTGRERYTINIPEDLKPRMTVQ 850

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 851 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3

>sp|P21399|ACOC_HUMAN Cytoplasmic aconitate hydratase OS=Homo sapiens GN=ACO1 PE=1 SV=3

 Score =  147 bits (372), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 85/97 (87%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K+Q
Sbjct: 791 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQ 850

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           V++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 851 VKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 887

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q0VCU1|ACOC_BOVIN Cytoplasmic aconitate hydratase OS=Bos taurus GN=ACO1 PE=2 SV=1

 Score =  147 bits (371), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 84/97 (86%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G++AV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP+  KP  K+Q
Sbjct: 791 GIRAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLGLTGRERYTISIPETLKPRMKVQ 850

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 851 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q90875|ACOC_CHICK Cytoplasmic aconitate hydratase OS=Gallus gallus GN=ACO1 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           GVKAV+AESYERIHRSNLVGMG+ PLQ+LPGE+A +L LTG+ERYTI IP++ KP   +Q
Sbjct: 791 GVKAVLAESYERIHRSNLVGMGVIPLQYLPGEDARTLGLTGRERYTIIIPENLKPQMNIQ 850

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           +++D G+ F  I+RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 851 IKLDTGKTFHAIMRFDTDVELTYFHNGGILNYMIRKM 887

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Gallus gallus (taxid: 9031)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q01059|ACOC_RABIT Cytoplasmic aconitate hydratase OS=Oryctolagus cuniculus GN=ACO1 PE=1 SV=1

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 82/97 (84%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAV+AESYERIHRSNLVGMG+ PL++LPGENADSL LTG+ERYTI IP++  P   +Q
Sbjct: 791 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQ 850

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           V++D G+ F  ++RFDT+V++ Y  +GGILNYMIRKM
Sbjct: 851 VKLDTGKTFQAVIRFDTDVELTYLHNGGILNYMIRKM 887

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Oryctolagus cuniculus (taxid: 9986)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q23500|ACOC_CAEEL Probable cytoplasmic aconitate hydratase OS=Caenorhabditis elegans GN=aco-1 PE=1 SV=1

 Score =  143 bits (360), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 81/101 (80%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQ 61
             QGVKAVIAES+ERIHRSNL+GMGI P Q+  G+NADSL LTGKE+++I +PDD KP Q
Sbjct: 786 FLQGVKAVIAESFERIHRSNLIGMGIIPFQYQAGQNADSLGLTGKEQFSIGVPDDLKPGQ 845

Query: 62  KLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
            + V V +G  F VI RFDTEV++ YY++GGIL YMIRK++
Sbjct: 846 LIDVNVSNGSVFQVICRFDTEVELTYYRNGGILQYMIRKLI 886

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Caenorhabditis elegans (taxid: 6239)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q63270|ACOC_RAT Cytoplasmic aconitate hydratase OS=Rattus norvegicus GN=Aco1 PE=1 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 81/97 (83%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAV+AESYER H SNLVGMG+ PL++LPGE ADSL LTG+ERYTI IP+  KP  K+Q
Sbjct: 791 GIKAVLAESYERTHCSNLVGMGVIPLEYLPGETADSLGLTGRERYTIHIPEHLKPRMKVQ 850

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 851 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9SIB9|ACO2M_ARATH Aconitate hydratase 2, mitochondrial OS=Arabidopsis thaliana GN=ACO2 PE=1 SV=2

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 78/103 (75%), Gaps = 3/103 (2%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD---AK 58
           + QGVKAVIA+S+ERIHRSNLVGMGI PL F  GE+AD+L LTG ERYTI +P D    +
Sbjct: 885 MLQGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIHLPTDISEIR 944

Query: 59  PHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           P Q + V  D+G+ F+  +RFDTEV++ Y+ HGGIL Y+IR +
Sbjct: 945 PGQDVTVTTDNGKSFTCTVRFDTEVELAYFNHGGILPYVIRNL 987

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|O04916|ACOC_SOLTU Aconitate hydratase, cytoplasmic (Fragment) OS=Solanum tuberosum PE=2 SV=1

 Score =  130 bits (327), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 81/103 (78%), Gaps = 3/103 (2%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD---AK 58
           +  GVKAVIA+S+ERIHRSNLVGMGI PL F  GE+AD+L LTG+ERYTI +P++    +
Sbjct: 511 MLLGVKAVIAKSFERIHRSNLVGMGIVPLCFKAGEDADTLGLTGQERYTIDLPENISEIR 570

Query: 59  PHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           P Q + V+ D G+ F+ I+RFDTEV++ Y+ HGGIL Y+IR++
Sbjct: 571 PGQDVTVQTDTGKSFTCIVRFDTEVELAYFNHGGILQYVIRQL 613

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Solanum tuberosum (taxid: 4113)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

>sp|Q42669|ACOC_CUCMC Aconitate hydratase (Fragment) OS=Cucumis melo var. conomon GN=ACO PE=2 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDA---K 58
           +  GVKAVIA+S+ERIHRSNLVGMGI PL F  GE+ADSL LTG ER+TI +P +    +
Sbjct: 657 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADSLGLTGHERFTIDLPSNVGEIR 716

Query: 59  PHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           P Q + V  D G+ FS ILRFDTEV++ Y+ HGGIL Y+IR ++
Sbjct: 717 PGQDVAVVTDTGKSFSCILRFDTEVELAYFDHGGILQYVIRNLI 760

Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.

Cucumis melo var. conomon (taxid: 3657)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
193631957	890	PREDICTED: cytoplasmic aconitate hydrata	0.960	0.110	0.744	5e-36
383848028	891	PREDICTED: cytoplasmic aconitate hydrata	0.960	0.109	0.714	7e-36
350405429	891	PREDICTED: cytoplasmic aconitate hydrata	0.960	0.109	0.693	1e-35
157118150	901	aconitase [Aedes aegypti] gi|108875800|g	0.960	0.108	0.714	3e-35
38259910	901	iron regulatory protein [Aedes aegypti]	0.960	0.108	0.714	3e-35
242018544	893	aconitase, putative [Pediculus humanus c	0.960	0.109	0.724	6e-35
390350005	895	PREDICTED: cytoplasmic aconitate hydrata	0.970	0.110	0.646	6e-35
390350007	951	PREDICTED: cytoplasmic aconitate hydrata	0.970	0.104	0.646	6e-35
195443594	1074	GK11552 [Drosophila willistoni] gi|19416	0.950	0.090	0.747	1e-34
195449134	900	GK22582 [Drosophila willistoni] gi|19416	0.950	0.107	0.747	1e-34

>gi|193631957|ref|XP_001952191.1| PREDICTED: cytoplasmic aconitate hydratase-like [Acyrthosiphon pisum]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/98 (74%), Positives = 83/98 (84%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAVIAESYERIHRSNLVGMGI PLQF  GENA++LKLTG E Y I IP + KP Q++Q
Sbjct: 792 GIKAVIAESYERIHRSNLVGMGIIPLQFRFGENAETLKLTGHEIYDIDIPQNCKPLQEIQ 851

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           V+ + G  F+ ILRFDTEVDILY+KHGGILNYMIRKML
Sbjct: 852 VKTNTGVTFNAILRFDTEVDILYHKHGGILNYMIRKML 889

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848028|ref|XP_003699654.1| PREDICTED: cytoplasmic aconitate hydratase [Megachile rotundata]

 Score =  154 bits (389), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 83/98 (84%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAVIAESYERIHRSNLVGMGI PLQ+LPG+ A++L LTG E Y I IP++ +P QK+ 
Sbjct: 794 GIKAVIAESYERIHRSNLVGMGIVPLQYLPGQTAETLGLTGYELYDIAIPENCQPGQKIT 853

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           V  DDG+KF VI RFDTEVD+ Y++HGGILNYMIRKML
Sbjct: 854 VTTDDGKKFEVITRFDTEVDLTYFRHGGILNYMIRKML 891

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405429|ref|XP_003487432.1| PREDICTED: cytoplasmic aconitate hydratase-like [Bombus impatiens]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 85/98 (86%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G++AVIAESYERIHRSNLVGMGI PLQ+LPG+NA++L LTG E Y + +P++++P Q + 
Sbjct: 794 GIRAVIAESYERIHRSNLVGMGIIPLQYLPGQNAETLGLTGYEMYDVVVPENSQPGQLIT 853

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           +  DDG++F VILRFDTEVD+ YYKHGGILNYMIRKML
Sbjct: 854 ITTDDGKRFEVILRFDTEVDLTYYKHGGILNYMIRKML 891

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118150|ref|XP_001659032.1| aconitase [Aedes aegypti] gi|108875800|gb|EAT40025.1| AAEL008216-PA [Aedes aegypti]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 84/98 (85%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAVIAESYERIHRSNLVGMGI PLQ+L G+NADS+ LTGKE ++I  P++ KPH K+ 
Sbjct: 803 GIKAVIAESYERIHRSNLVGMGIVPLQYLDGQNADSVGLTGKELFSIAFPENLKPHDKIT 862

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           VE D G KF VI+RFDTEVD+ YY++GGILNYMIRKM+
Sbjct: 863 VETDTGVKFQVIVRFDTEVDLEYYRNGGILNYMIRKMI 900

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38259910|gb|AAR15297.1| iron regulatory protein [Aedes aegypti]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/98 (71%), Positives = 84/98 (85%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAVIAESYERIHRSNLVGMGI PLQ+L G+NADS+ LTGKE ++I  P++ KPH K+ 
Sbjct: 803 GIKAVIAESYERIHRSNLVGMGIVPLQYLDGQNADSVGLTGKELFSIAFPENLKPHDKIT 862

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           VE D G KF VI+RFDTEVD+ YY++GGILNYMIRKM+
Sbjct: 863 VETDTGVKFQVIVRFDTEVDLEYYRNGGILNYMIRKMI 900

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018544|ref|XP_002429734.1| aconitase, putative [Pediculus humanus corporis] gi|212514746|gb|EEB16996.1| aconitase, putative [Pediculus humanus corporis]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 83/98 (84%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAVIAE+YERIHRSNLVGMGI PLQ+L G++A+ LKLTGKE YTI IPDD KP QK+ 
Sbjct: 795 GIKAVIAETYERIHRSNLVGMGIIPLQYLEGQDAEKLKLTGKETYTIDIPDDVKPLQKIT 854

Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           V ++DGR F   LR DTEV++ YYK+GGILNYMIRKML
Sbjct: 855 VNLNDGRSFDTRLRLDTEVELTYYKNGGILNYMIRKML 892

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390350005|ref|XP_003727326.1| PREDICTED: cytoplasmic aconitate hydratase isoform 1 [Strongylocentrotus purpuratus]

 Score =  151 bits (381), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 86/99 (86%)

Query: 4   QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKL 63
           QG++AVIAE+YERIHRSNLVGMGI PLQFL G+NA++L LTGKE+YTI +PD+  P  ++
Sbjct: 795 QGIQAVIAETYERIHRSNLVGMGIVPLQFLEGQNAETLGLTGKEKYTISLPDNLTPRHQI 854

Query: 64  QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
            V++DDG+ F V +RFDT+V++ +Y+HGGILNYM+R+ML
Sbjct: 855 TVQLDDGKSFDVCVRFDTDVELTFYRHGGILNYMVRRML 893

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|390350007|ref|XP_791082.2| PREDICTED: cytoplasmic aconitate hydratase isoform 2 [Strongylocentrotus purpuratus]

 Score =  150 bits (380), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 64/99 (64%), Positives = 86/99 (86%)

Query: 4   QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKL 63
           QG++AVIAE+YERIHRSNLVGMGI PLQFL G+NA++L LTGKE+YTI +PD+  P  ++
Sbjct: 851 QGIQAVIAETYERIHRSNLVGMGIVPLQFLEGQNAETLGLTGKEKYTISLPDNLTPRHQI 910

Query: 64  QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
            V++DDG+ F V +RFDT+V++ +Y+HGGILNYM+R+ML
Sbjct: 911 TVQLDDGKSFDVCVRFDTDVELTFYRHGGILNYMVRRML 949

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|195443594|ref|XP_002069487.1| GK11552 [Drosophila willistoni] gi|194165572|gb|EDW80473.1| GK11552 [Drosophila willistoni]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 83/99 (83%), Gaps = 2/99 (2%)

Query: 5    GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDA-KPHQKL 63
            GVKAV+AESYERIHRSNLVGMGI PLQFLPG+NA++LKL G+E Y I +P+   KP QK+
Sbjct: 976  GVKAVVAESYERIHRSNLVGMGIIPLQFLPGQNAETLKLNGREVYNISLPESGLKPGQKI 1035

Query: 64   QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
            QVE  DG  F  ILRFDTEVDI YYK+GGILNYMIRKML
Sbjct: 1036 QVEA-DGTVFETILRFDTEVDITYYKNGGILNYMIRKML 1073

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195449134|ref|XP_002071941.1| GK22582 [Drosophila willistoni] gi|194168026|gb|EDW82927.1| GK22582 [Drosophila willistoni]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 83/99 (83%), Gaps = 2/99 (2%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDA-KPHQKL 63
           GVKAV+AESYERIHRSNLVGMGI PLQFLPG+NA++LKL G+E Y I +P+   KP QK+
Sbjct: 802 GVKAVVAESYERIHRSNLVGMGIIPLQFLPGQNAETLKLNGREVYNISLPESGLKPGQKI 861

Query: 64  QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           QVE  DG  F  ILRFDTEVDI YYK+GGILNYMIRKML
Sbjct: 862 QVEA-DGTVFETILRFDTEVDITYYKNGGILNYMIRKML 899

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|D4ACL3	897	Aco1 "Cytoplasmic aconitate hy	0.950	0.108	0.670	3.3e-33
UNIPROTKB|I3LJW4	898	ACO1 "Uncharacterized protein"	0.950	0.108	0.670	8.9e-33
UNIPROTKB|Q9HBB2	790	IRP1 "Cytoplasmic aconitate hy	0.950	0.122	0.670	1.1e-32
UNIPROTKB|P21399	889	ACO1 "Cytoplasmic aconitate hy	0.950	0.109	0.670	1.4e-32
MGI|MGI:87879	889	Aco1 "aconitase 1" [Mus muscul	0.950	0.109	0.659	1.4e-32
UNIPROTKB|F1MS05	889	ACO1 "Cytoplasmic aconitate hy	0.950	0.109	0.649	2.3e-32
UNIPROTKB|Q0VCU1	889	ACO1 "Cytoplasmic aconitate hy	0.950	0.109	0.649	2.3e-32
UNIPROTKB|E2RMX9	901	ACO1 "Uncharacterized protein"	0.950	0.107	0.659	2.4e-32
FB|FBgn0024957	899	Irp-1B "Iron regulatory protei	0.950	0.107	0.727	6.5e-32
FB|FBgn0024958	902	Irp-1A "Iron regulatory protei	0.950	0.107	0.717	6.5e-32

UNIPROTKB|D4ACL3 Aco1 "Cytoplasmic aconitate hydratase" [Rattus norvegicus (taxid:10116)]

 Score = 372 (136.0 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 65/97 (67%), Positives = 84/97 (86%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGE ADSL LTG+ERYTI IP+D KP  K+Q
Sbjct:   799 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADSLGLTGRERYTIHIPEDLKPRMKVQ 858

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   859 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 895

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0010040 "response to iron(II) ion" evidence=IEA

GO:0050892 "intestinal absorption" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|I3LJW4 ACO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 368 (134.6 bits), Expect = 8.9e-33, P = 8.9e-33
 Identities = 65/97 (67%), Positives = 84/97 (86%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP+  KP  K+Q
Sbjct:   800 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLGLTGRERYTISIPETLKPQMKVQ 859

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             V++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   860 VKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 896

GO:0050892 "intestinal absorption" evidence=IEA

GO:0010040 "response to iron(II) ion" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q9HBB2 IRP1 "Cytoplasmic aconitate hydratase" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 65/97 (67%), Positives = 85/97 (87%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K+Q
Sbjct:   692 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQ 751

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             V++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   752 VKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 788

GO:0008152 "metabolic process" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0050892 "intestinal absorption" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P21399 ACO1 "Cytoplasmic aconitate hydratase" [Homo sapiens (taxid:9606)]

 Score = 366 (133.9 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 65/97 (67%), Positives = 85/97 (87%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K+Q
Sbjct:   791 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQ 850

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             V++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   851 VKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 887

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0052632 "citrate hydro-lyase (cis-aconitate-forming) activity" evidence=IEA

GO:0052633 "isocitrate hydro-lyase (cis-aconitate-forming) activity" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0050892 "intestinal absorption" evidence=IEA

GO:0003994 "aconitate hydratase activity" evidence=IDA

GO:0030350 "iron-responsive element binding" evidence=IDA

GO:0003723 "RNA binding" evidence=IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0005515 "protein binding" evidence=IPI

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0010040 "response to iron(II) ion" evidence=IDA

GO:0006101 "citrate metabolic process" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:87879 Aco1 "aconitase 1" [Mus musculus (taxid:10090)]

 Score = 366 (133.9 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 64/97 (65%), Positives = 83/97 (85%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGE ADSL LTG+ERYTI IP+D KP   +Q
Sbjct:   791 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADSLGLTGRERYTINIPEDLKPRMTVQ 850

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   851 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887

GO:0003723 "RNA binding" evidence=ISO

GO:0003994 "aconitate hydratase activity" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=ISO

GO:0006417 "regulation of translation" evidence=IMP

GO:0006879 "cellular iron ion homeostasis" evidence=ISO;IGI;IMP

GO:0008152 "metabolic process" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IGI

GO:0010040 "response to iron(II) ion" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=IGI

GO:0016829 "lyase activity" evidence=IEA

GO:0030350 "iron-responsive element binding" evidence=ISO;IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048027 "mRNA 5'-UTR binding" evidence=ISO

GO:0050892 "intestinal absorption" evidence=IGI

GO:0051536 "iron-sulfur cluster binding" evidence=ISO

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISO

GO:0052632 "citrate hydro-lyase (cis-aconitate-forming) activity" evidence=IEA

GO:0052633 "isocitrate hydro-lyase (cis-aconitate-forming) activity" evidence=IEA

UNIPROTKB|F1MS05 ACO1 "Cytoplasmic aconitate hydratase" [Bos taurus (taxid:9913)]

 Score = 364 (133.2 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 63/97 (64%), Positives = 84/97 (86%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G++AV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP+  KP  K+Q
Sbjct:   791 GIRAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLGLTGRERYTISIPETLKPRMKVQ 850

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   851 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887

GO:0050892 "intestinal absorption" evidence=IEA

GO:0010040 "response to iron(II) ion" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|Q0VCU1 ACO1 "Cytoplasmic aconitate hydratase" [Bos taurus (taxid:9913)]

 Score = 364 (133.2 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 63/97 (64%), Positives = 84/97 (86%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G++AV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP+  KP  K+Q
Sbjct:   791 GIRAVLAESYERIHRSNLVGMGVIPLEYLPGENADTLGLTGRERYTISIPETLKPRMKVQ 850

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             +++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct:   851 IKLDTGKTFQAVMRFDTDVELTYFHNGGILNYMIRKM 887

GO:0030350 "iron-responsive element binding" evidence=ISS

GO:0006101 "citrate metabolic process" evidence=ISS

GO:0010040 "response to iron(II) ion" evidence=ISS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=ISS

GO:0003994 "aconitate hydratase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0052633 "isocitrate hydro-lyase (cis-aconitate-forming) activity" evidence=IEA

GO:0052632 "citrate hydro-lyase (cis-aconitate-forming) activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

UNIPROTKB|E2RMX9 ACO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 2.4e-32, P = 2.4e-32
 Identities = 64/97 (65%), Positives = 84/97 (86%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGE AD+L LTG+ERYTI IPD+  P  K+Q
Sbjct:   802 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGETADTLGLTGRERYTIIIPDNLTPRMKVQ 861

Query:    65 VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
             V++D G+ F  I+RFDT+V+++Y+ +GGILNYM+RKM
Sbjct:   862 VQLDSGKTFQAIMRFDTDVELVYFHNGGILNYMVRKM 898

GO:0050892 "intestinal absorption" evidence=IEA

GO:0010040 "response to iron(II) ion" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0006101 "citrate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

FB|FBgn0024957 Irp-1B "Iron regulatory protein 1B" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 6.5e-32, P = 6.5e-32
 Identities = 72/99 (72%), Positives = 82/99 (82%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDA-KPHQKL 63
             GVKAVIAESYERIHRSN+VGMGI P QFLPG++A++L LTG+E Y I +P+   KP QK+
Sbjct:   801 GVKAVIAESYERIHRSNMVGMGIIPXQFLPGQSAETLNLTGREVYNIALPESGLKPGQKI 860

Query:    64 QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
             QVE D G  F  ILRFDTEVDI YYK+GGILNYMIRKML
Sbjct:   861 QVEAD-GTVFETILRFDTEVDITYYKNGGILNYMIRKML 898

GO:0003729 "mRNA binding" evidence=ISS

GO:0005506 "iron ion binding" evidence=ISS;NAS

GO:0003994 "aconitate hydratase activity" evidence=ISS;IDA

GO:0006447 "regulation of translational initiation by iron" evidence=NAS

GO:0008152 "metabolic process" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0030350 "iron-responsive element binding" evidence=IDA

FB|FBgn0024958 Irp-1A "Iron regulatory protein 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 360 (131.8 bits), Expect = 6.5e-32, P = 6.5e-32
 Identities = 71/99 (71%), Positives = 84/99 (84%)

Query:     5 GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPD-DAKPHQKL 63
             G+KAVIAESYERIHRSNLVGMGI PLQFLPG++AD+LKL+G+E Y I +P+ + KP Q++
Sbjct:   804 GIKAVIAESYERIHRSNLVGMGIIPLQFLPGQSADTLKLSGREVYNIVLPEGELKPGQRI 863

Query:    64 QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
             QV+ D G  F   LRFDTEVDI YYK+GGILNYMIRKML
Sbjct:   864 QVDAD-GNVFETTLRFDTEVDITYYKNGGILNYMIRKML 901

GO:0003729 "mRNA binding" evidence=ISS;NAS

GO:0005506 "iron ion binding" evidence=ISS;NAS

GO:0003994 "aconitate hydratase activity" evidence=ISS;IDA

GO:0006447 "regulation of translational initiation by iron" evidence=ISS;NAS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0030350 "iron-responsive element binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P21399	ACOC_HUMAN	4, ., 2, ., 1, ., 3	0.6701	0.9509	0.1091	yes	N/A
Q90875	ACOC_CHICK	4, ., 2, ., 1, ., 3	0.6597	0.9509	0.1091	yes	N/A
Q54X73	ACOC_DICDI	4, ., 2, ., 1, ., 3	0.5436	0.9803	0.1118	yes	N/A
Q0VCU1	ACOC_BOVIN	4, ., 2, ., 1, ., 3	0.6494	0.9509	0.1091	yes	N/A
Q9SIB9	ACO2M_ARATH	4, ., 2, ., 1, ., 3	0.5922	0.9803	0.1010	yes	N/A
Q9RTN7	ACON_DEIRA	4, ., 2, ., 1, ., 3	0.5588	0.9607	0.1081	yes	N/A
P37032	ACON_LEGPH	4, ., 2, ., 1, ., 3	0.5049	0.9509	0.1088	yes	N/A
P28271	ACOC_MOUSE	4, ., 2, ., 1, ., 3	0.6597	0.9509	0.1091	yes	N/A
Q9I3F5	ACON1_PSEAE	4, ., 2, ., 1, ., 3	0.5825	0.9607	0.1076	yes	N/A
Q5HPJ0	ACON_STAEQ	4, ., 2, ., 1, ., 3	0.5098	0.9607	0.1087	yes	N/A
Q01059	ACOC_RABIT	4, ., 2, ., 1, ., 3	0.6597	0.9509	0.1091	yes	N/A
Q8CPC2	ACON_STAES	4, ., 2, ., 1, ., 3	0.5098	0.9607	0.1087	yes	N/A
Q63270	ACOC_RAT	4, ., 2, ., 1, ., 3	0.6391	0.9509	0.1091	yes	N/A
A0QX20	ACON_MYCS2	4, ., 2, ., 1, ., 3	0.5047	0.9607	0.1039	yes	N/A
Q23500	ACOC_CAEEL	4, ., 2, ., 1, ., 3	0.6435	0.9901	0.1138	yes	N/A
Q59938	ACON_STRMU	4, ., 2, ., 1, ., 3	0.5346	0.9607	0.1103	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
PTZ00092	898	PTZ00092, PTZ00092, aconitate hydratase-like prote	2e-50
PRK09277	888	PRK09277, PRK09277, aconitate hydratase; Validated	4e-48
PLN00070	936	PLN00070, PLN00070, aconitate hydratase	8e-44
COG1048	861	COG1048, AcnA, Aconitase A [Energy production and	2e-39
PRK12881	889	PRK12881, acnA, aconitate hydratase; Provisional	5e-37
TIGR01341	876	TIGR01341, aconitase_1, aconitate hydratase 1	8e-36
cd01580	171	cd01580, AcnA_IRP_Swivel, Aconitase A swivel domai	2e-29
TIGR02333	858	TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh	9e-18
PRK07229	646	PRK07229, PRK07229, aconitate hydratase; Validated	4e-13
pfam00694	131	pfam00694, Aconitase_C, Aconitase C-terminal domai	5e-12
cd00404	88	cd00404, Aconitase_swivel, Aconitase swivel domain	3e-11
TIGR01342	658	TIGR01342, acon_putative, aconitate hydratase, put	6e-10
cd01579	121	cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-lik	2e-08
TIGR01340	745	TIGR01340, aconitase_mito, aconitate hydratase, mi	1e-05
cd01577	91	cd01577, IPMI_Swivel, Aconatase-like swivel domain	2e-04
PRK14023	166	PRK14023, PRK14023, homoaconitate hydratase small	7e-04
cd01578	149	cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconi	8e-04
COG0066	191	COG0066, LeuD, 3-isopropylmalate dehydratase small	0.001

>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional

 Score =  169 bits (430), Expect = 2e-50
 Identities = 65/100 (65%), Positives = 81/100 (81%), Gaps = 1/100 (1%)

Query: 4   QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIP-DDAKPHQK 62
           QGVKAVIAES+ERIHRSNLVGMGI PLQFL GENADSL LTGKE+++I +   + KP Q 
Sbjct: 797 QGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQD 856

Query: 63  LQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           + V+ D G+ F  ILR DTEV++ Y+KHGGIL Y++RK++
Sbjct: 857 VTVKTDTGKTFDTILRIDTEVEVEYFKHGGILQYVLRKLV 896

Length = 898

>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated

 Score =  162 bits (414), Expect = 4e-48
 Identities = 54/102 (52%), Positives = 70/102 (68%), Gaps = 4/102 (3%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           GVKAVIAES+ERIHRSNLVGMG+ PLQF PGE+  +L L G E + I   +D KP   + 
Sbjct: 785 GVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLEDLKPGATVT 844

Query: 65  VEV--DDGRK--FSVILRFDTEVDILYYKHGGILNYMIRKML 102
           V +   DG    F V+ R DT V++ YY++GGIL Y++R +L
Sbjct: 845 VVITRADGEVVEFPVLCRIDTAVEVDYYRNGGILQYVLRDLL 886

Length = 888

>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase

 Score =  150 bits (381), Expect = 8e-44
 Identities = 61/104 (58%), Positives = 78/104 (75%), Gaps = 3/104 (2%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDA---K 58
           +  GVKAVIA+S+ERIHRSNLVGMGI PL F  GE+AD+L LTG ERYTI +P +    K
Sbjct: 831 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIK 890

Query: 59  PHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           P Q + V  D+G+ F+  LRFDTEV++ Y+ HGGIL Y+IR ++
Sbjct: 891 PGQDVTVTTDNGKSFTCTLRFDTEVELAYFDHGGILPYVIRNLI 934

Length = 936

>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion]

 Score =  138 bits (349), Expect = 2e-39
 Identities = 55/105 (52%), Positives = 66/105 (62%), Gaps = 4/105 (3%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQ 61
              GVKAVIAES+ERIHRSNL+GMG+ PLQF  GE  D L L G+E   I   ++ KP  
Sbjct: 756 RLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGA 815

Query: 62  KLQVEV--DDGRK--FSVILRFDTEVDILYYKHGGILNYMIRKML 102
            + V V   DG    F V+ R DT  +I YYK GGILNY+ R +L
Sbjct: 816 TVTVTVTRGDGPVEEFPVLCRIDTAEEIEYYKAGGILNYVKRDLL 860

Length = 861

>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional

 Score =  131 bits (331), Expect = 5e-37
 Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 5/103 (4%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR-IPDDAKPHQKL 63
           GVKAVIAES+ERIHRSNLVGMG+ PLQF  G++  SL LTG E + I  +P + KP Q +
Sbjct: 786 GVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDV 845

Query: 64  QVEV--DDGR--KFSVILRFDTEVDILYYKHGGILNYMIRKML 102
            + +   DG   +  V+ R DT +++ YYK GGIL Y++R++L
Sbjct: 846 TLVIHRADGSTERVPVLCRIDTPIEVDYYKAGGILPYVLRQLL 888

Length = 889

>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1

 Score =  127 bits (322), Expect = 8e-36
 Identities = 57/102 (55%), Positives = 72/102 (70%), Gaps = 4/102 (3%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           GVKAVIAES+ERIHRSNLVGMG+ PLQF  GE+A++L LTG E   I    D KP +++ 
Sbjct: 775 GVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVT 834

Query: 65  VEVDDGR----KFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           V   + +     F  +LR DTEV++ YYKHGGIL Y++RK L
Sbjct: 835 VTFTNSKGEKITFKCVLRIDTEVELDYYKHGGILQYVLRKFL 876

This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes [Energy metabolism, TCA cycle]. Length = 876

>gnl|CDD|238812 cd01580, AcnA_IRP_Swivel, Aconitase A swivel domain

 Score =  103 bits (258), Expect = 2e-29
 Identities = 40/48 (83%), Positives = 42/48 (87%)

Query: 4   QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTI 51
            GVKAVIAES+ERIHRSNLVGMGI PLQF PGENADSL LTG+E Y I
Sbjct: 122 LGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDI 169

This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Length = 171

>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent

 Score = 76.6 bits (188), Expect = 9e-18
 Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           GV+A++AE +ERIHR+NLVGMG+ PL+F PG N  +L L G E + +      +    L 
Sbjct: 758 GVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVVGEITPRADLTLV 817

Query: 65  VEVDDGRKFSVIL--RFDTEVDILYYKHGGIL 94
           V   +G K  V +  R DT  ++  Y+ GG+L
Sbjct: 818 VTRKNGEKLEVPVTCRLDTAEEVSVYEAGGVL 849

Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PMID:12473114). Length = 858

>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated

 Score = 63.2 bits (155), Expect = 4e-13
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 11/105 (10%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPD--DAKP 59
            + GVKAV+A+S+ RIH++NL+  GI PL F    + D +    +E   + I D  +  P
Sbjct: 547 RYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKI----EEGDVLEIEDLREFLP 602

Query: 60  HQKLQVE-VDDGRKFSVILRF-DTEVDILYYKHGGILNYMIRKML 102
              L V  V    +  V     + +++IL    GG LN  I+K L
Sbjct: 603 GGPLTVVNVTKDEEIEVRHTLSERQIEIL--LAGGALNL-IKKKL 644

Length = 646

>gnl|CDD|201399 pfam00694, Aconitase_C, Aconitase C-terminal domain

 Score = 57.3 bits (139), Expect = 5e-12
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPG 35
              G+KAVIA+S+ RIHR+NL+  G+ PL+F  G
Sbjct: 98  RDLGIKAVIAKSFARIHRNNLIKNGLLPLEFPNG 131

Members of this family usually also match to pfam00330. This domain undergoes conformational change in the enzyme mechanism. Length = 131

>gnl|CDD|238236 cd00404, Aconitase_swivel, Aconitase swivel domain

 Score = 54.4 bits (131), Expect = 3e-11
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 2  LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTI 51
             G +AVIA+S+ RI   NLV  G+ PL+F   E+   LKL   +   I
Sbjct: 39 RLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDY--LKLHTGDELDI 86

Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid. Length = 88

>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD----- 56
           +F GV+AVIA+S+ RIH +NL   GI PL+F   E+    +L G +   I IPDD     
Sbjct: 553 MFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDD---IEIPDDLAAAL 608

Query: 57  AKPHQKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRK 100
           A    +  +  +D  +    L   +E +      GG LN +  K
Sbjct: 609 ADGEDEFTINKNDDEEALATLDA-SEREKEILAAGGKLNLIKNK 651

This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized [Energy metabolism, TCA cycle]. Length = 658

>gnl|CDD|238811 cd01579, AcnA_Bact_Swivel, Bacterial Aconitase-like swivel domain

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query: 2   LFQGVKAVIAESYERIHRSNLVGMGIAPLQF 32
           ++ GV+AV+A+S+ RIHR+NL+  GI PL F
Sbjct: 72  MYLGVRAVLAKSFARIHRANLINFGILPLTF 102

Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known. Length = 121

>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 16/105 (15%)

Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFL---------PGENADSLKLTGKERYTIRI 53
             G + +I +S+ RIH +NL   G+ PL F          PG+   +L L    +     
Sbjct: 647 HLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQPGDEVATLNLYEMLKNGGGG 706

Query: 54  PDDAKPHQKLQVEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
             D +  +K      +G+ F + L+   ++  I ++K G  LN M
Sbjct: 707 EVDLRVTKK------NGKVFEIKLKHTVSKDQIGFFKAGSALNLM 745

This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase [Energy metabolism, TCA cycle]. Length = 745

>gnl|CDD|238809 cd01577, IPMI_Swivel, Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query: 5  GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKE 47
          G++AVIAES+ RI   N +  G+ P+     +  +     G E
Sbjct: 44 GIRAVIAESFARIFFRNAINNGLLPVTLADEDVEEVEAKPGDE 86

3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. Length = 91

>gnl|CDD|184460 PRK14023, PRK14023, homoaconitate hydratase small subunit; Provisional

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQ 31
           G+ A+IA+SY RI   NLV +GI P +
Sbjct: 76  GIGAIIAKSYARIFYRNLVNLGIPPFE 102

Length = 166

>gnl|CDD|238810 cd01578, AcnA_Mitochon_Swivel, Mitochondrial aconitase A swivel domain

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQF 32
             G +A+I +S+ RIH +NL   G+ PL F
Sbjct: 94  HLGGRAIITKSFARIHETNLKKQGLLPLTF 123

Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members. Length = 149

>gnl|CDD|223144 COG0066, LeuD, 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGK-------ERYTIRIPDDA 57
           G++AVIA S+  I   N +  G+ P+     +  +  +           E   +  P   
Sbjct: 89  GIRAVIAPSFADIFYRNAINNGLLPIVLAEEDVTELFEDVPGDEVTVDLETGEVTNPTG- 147

Query: 58  KPHQKLQVEVDDGRK 72
               +   E+DD R+
Sbjct: 148 ---GEEPFEIDDFRR 159

Length = 191

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PTZ00092	898	aconitate hydratase-like protein; Provisional	99.93
PLN00070	936	aconitate hydratase	99.93
PRK12881	889	acnA aconitate hydratase; Provisional	99.92
PRK09277	888	aconitate hydratase; Validated	99.92
COG1048	861	AcnA Aconitase A [Energy production and conversion	99.92
TIGR01341	876	aconitase_1 aconitate hydratase 1. This model repr	99.92
TIGR01342	658	acon_putative aconitate hydratase, putative, Aquif	99.92
PRK00439	163	leuD 3-isopropylmalate dehydratase small subunit;	99.91
TIGR02084	156	leud 3-isopropylmalate dehydratase, small subunit.	99.91
KOG0452|consensus	892		99.91
PRK07229	646	aconitate hydratase; Validated	99.9
TIGR02087	154	LEUD_arch 3-isopropylmalate dehydratase, small sub	99.9
TIGR02333	858	2met_isocit_dHY 2-methylisocitrate dehydratase, Fe	99.9
PRK14023	166	homoaconitate hydratase small subunit; Provisional	99.89
PLN00072	246	3-isopropylmalate isomerase/dehydratase small subu	99.89
TIGR01340	745	aconitase_mito aconitate hydratase, mitochondrial.	99.87
PRK11413	751	putative hydratase; Provisional	99.83
TIGR00139	712	h_aconitase homoaconitase. Homoaconitase, aconitas	99.82
COG0066	191	LeuD 3-isopropylmalate dehydratase small subunit [	99.8
cd01578	149	AcnA_Mitochon_Swivel Mitochondrial aconitase A swi	99.72
PRK14812	119	hypothetical protein; Provisional	99.69
TIGR00171	188	leuD 3-isopropylmalate dehydratase, small subunit.	99.69
PRK01641	200	leuD isopropylmalate isomerase small subunit; Prov	99.69
KOG0453|consensus	778		99.68
cd01579	121	AcnA_Bact_Swivel Bacterial Aconitase-like swivel d	99.68
PRK09238	835	bifunctional aconitate hydratase 2/2-methylisocitr	99.67
cd01580	171	AcnA_IRP_Swivel Aconitase A swivel domain. This is	99.67
cd00404	88	Aconitase_swivel Aconitase swivel domain. Aconitas	99.66
TIGR00117	844	acnB aconitate hydratase 2. Aconitate hydratase (a	99.6
PLN00094	938	aconitate hydratase 2; Provisional	99.57
cd01577	91	IPMI_Swivel Aconatase-like swivel domain of 3-isop	99.56
PF00694	131	Aconitase_C: Aconitase C-terminal domain CAUTION:	99.52
cd01674	129	Homoaconitase_Swivel Homoaconitase swivel domain.	99.42
cd01576	131	AcnB_Swivel Aconitase B swivel domain. Aconitate h	99.22
KOG0454|consensus	502		98.42
PF06434	204	Aconitase_2_N: Aconitate hydratase 2 N-terminus; I	97.17
COG1049	852	AcnB Aconitase B [Energy production and conversion	80.03

>PTZ00092 aconitate hydratase-like protein; Provisional

Probab=99.93  E-value=8.5e-26  Score=188.92  Aligned_cols=101  Identities=64%  Similarity=1.071  Sum_probs=92.9

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEec-CCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRI-PDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl-~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      ++||++||||+||+|||++||+|+|+|||+|.++++++.+.+++++.++|++ .+.++||+.++++.++|++|++.++++
T Consensus       795 ~~lGvraVIA~SF~rIh~~Nli~~GvlPL~f~~~~~~~~l~~~~~~~i~i~~~~~~l~p~~~v~v~~~~G~~~~~~~r~d  874 (898)
T PTZ00092        795 YLQGVKAVIAESFERIHRSNLVGMGILPLQFLNGENADSLGLTGKEQFSIDLNSGELKPGQDVTVKTDTGKTFDTILRID  874 (898)
T ss_pred             HHhCCcEEEEecHHHHHHhhhhhcCcceeecCCcccHHHhcCCCCeEEEEeccccccCCCCeEEEEeCCCcEEEEEEeCC
Confidence            6899999999999999999999999999999999999998887888999986 566889987877667889999999999


Q ss_pred             CHHHHHHHHhCChHHHHHHhhC
Q psy7216          81 TEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      |+.|++|+++||+|||++++++
T Consensus       875 t~~e~~y~~~GGiL~yv~~~~~  896 (898)
T PTZ00092        875 TEVEVEYFKHGGILQYVLRKLV  896 (898)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999875

>PLN00070 aconitate hydratase

Probab=99.93  E-value=1.3e-25  Score=188.19  Aligned_cols=101  Identities=60%  Similarity=1.059  Sum_probs=91.5

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCC---CCCCceEEEEecCCeEEEEEec
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD---AKPHQKLQVEVDDGRKFSVILR   78 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~---~~~g~~v~~~~~~g~~~~~~~~   78 (102)
                      ++|||+||||+||+|||++||+|+|+|||+|+++++++.++..|++.++|++.+.   ++||+.++++.++|++|++.++
T Consensus       831 ~~lGvkaVIA~SF~rIhrsNli~~GiLPL~f~~~~~~~~l~~~g~~~~~i~l~~~~~~l~p~~~~~v~~~~g~~~~~~~r  910 (936)
T PLN00070        831 MLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKSGEDADTLGLTGHERYTIDLPSNISEIKPGQDVTVTTDNGKSFTCTLR  910 (936)
T ss_pred             HHhCCcEEEEccHHHHHHhhhhhcCcceEEeCCcccHHHHhcCCCceEEEeccccccccCCCCEEEEEeCCCeEEEEEEe
Confidence            5899999999999999999999999999999999999999887888888887543   7889877776678899999999


Q ss_pred             CCCHHHHHHHHhCChHHHHHHhhC
Q psy7216          79 FDTEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        79 ~~~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      +||+.|++|+++||+|||++++++
T Consensus       911 ~dt~~E~~~~~~GGiL~~v~r~~~  934 (936)
T PLN00070        911 FDTEVELAYFDHGGILPYVIRNLI  934 (936)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999875

>PRK12881 acnA aconitate hydratase; Provisional

Probab=99.92  E-value=3.3e-25  Score=185.37  Aligned_cols=101  Identities=52%  Similarity=0.900  Sum_probs=88.3

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEec-CCCCCCCceEEEEe--cCC--eEEEEE
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRI-PDDAKPHQKLQVEV--DDG--RKFSVI   76 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl-~~~~~~g~~v~~~~--~~g--~~~~~~   76 (102)
                      +++||+||||+||+||||+|++|+|+|||+|+++.+++.++++++|.++|+. .+.+.||+++++.+  ++|  .++++.
T Consensus       783 ~~lGv~aVIA~SFaRIh~~Nli~~GilpL~f~~~~~~~~l~l~g~d~i~I~~~~~~i~p~~~v~v~~~~~~G~~~~~~~~  862 (889)
T PRK12881        783 RLLGVKAVIAESFERIHRSNLVGMGVLPLQFKGGDSRQSLGLTGGETFDIEGLPGEIKPRQDVTLVIHRADGSTERVPVL  862 (889)
T ss_pred             HHhCCcEEEEecHHHHHHhhhhhcCcceEEeCCccchhhcCcCCCCEEEEeCCccccCCCCeEEEEEEeCCCCEEEEEEE
Confidence            6899999999999999999999999999999988899988877899999984 44578888776644  466  467778


Q ss_pred             ecCCCHHHHHHHHhCChHHHHHHhhC
Q psy7216          77 LRFDTEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        77 ~~~~~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      ++++|+.|++|+++||+|||++++++
T Consensus       863 ~r~dt~~e~e~~~aGGiL~yv~~~~~  888 (889)
T PRK12881        863 CRIDTPIEVDYYKAGGILPYVLRQLL  888 (889)
T ss_pred             eccCCHHHHHHHHcCCHHHHHHHHhh
Confidence            88889999999999999999999875

>PRK09277 aconitate hydratase; Validated

Probab=99.92  E-value=2.7e-25  Score=185.75  Aligned_cols=101  Identities=53%  Similarity=0.933  Sum_probs=90.2

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEe-cCCCCCCCceEEEEe--cCC--eEEEE
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR-IPDDAKPHQKLQVEV--DDG--RKFSV   75 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~id-l~~~~~~g~~v~~~~--~~g--~~~~~   75 (102)
                      +++||++||||+||+|||++||+|+|+|||+|+++++++++.++|+|.++|+ +.+ ++||+.+++.+  .+|  .+|++
T Consensus       781 ~~~lgi~avia~sf~rI~~~Nli~~Gilpl~~~~~~~~~~lgl~g~e~~~i~~l~~-l~p~~~v~v~~~~~~G~~~~~~~  859 (888)
T PRK09277        781 TRLLGVKAVIAESFERIHRSNLVGMGVLPLQFKPGESRKTLGLDGTETFDIEGLED-LKPGATVTVVITRADGEVVEFPV  859 (888)
T ss_pred             HHHhCCcEEEEecHHHHHHhhHhhcCcceeecCCcccHHHhCCCCCceEEEcCccc-CCCCCEEEEEEEeCCCCEEEEEE
Confidence            3689999999999999999999999999999999999999988899999996 544 88998777654  355  57999


Q ss_pred             EecCCCHHHHHHHHhCChHHHHHHhhC
Q psy7216          76 ILRFDTEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        76 ~~~~~~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      .+++||+.|++|+++||+|||++++++
T Consensus       860 ~~r~dt~~Ei~y~~~GGiL~yv~r~~~  886 (888)
T PRK09277        860 LCRIDTAVEVDYYRNGGILQYVLRDLL  886 (888)
T ss_pred             EEecCCHHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999875

>COG1048 AcnA Aconitase A [Energy production and conversion]

Probab=99.92  E-value=4.5e-25  Score=182.86  Aligned_cols=101  Identities=54%  Similarity=0.853  Sum_probs=88.6

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEec--CC--eEEEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVD--DG--RKFSVIL   77 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~--~g--~~~~~~~   77 (102)
                      ++|||+||||+||+||||+|++|||+|||+|+++.+++++..+|++.+.++..+.+.|+.++++.++  +|  .++.+.+
T Consensus       756 ~lLGv~AVIAeSFeRIHrSNLi~mGvLPLqf~~~~~~~~l~l~g~e~~~i~~~~~~~p~~~~~v~~~~~dg~~~~~~~~~  835 (861)
T COG1048         756 RLLGVKAVIAESFERIHRSNLIGMGVLPLQFPNGETYDKLGLDGEETIDIGGLENLKPGATVTVTVTRGDGPVEEFPVLC  835 (861)
T ss_pred             hhcCeeeeeehhHHHHHHhhcccceeeeeeccCCCChhhcCCCCceeEeecccccCCCCceEEEEEEcCCCceEEEeeee
Confidence            6899999999999999999999999999999999999999988888888776655667777766653  45  3688888


Q ss_pred             cCCCHHHHHHHHhCChHHHHHHhhC
Q psy7216          78 RFDTEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        78 ~~~~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      +++|+.|++|+++||+|||++++++
T Consensus       836 r~dt~~E~~y~k~GGiL~~v~~~~~  860 (861)
T COG1048         836 RIDTAEEIEYYKAGGILNYVKRDLL  860 (861)
T ss_pred             ecCCHHHHHHHHcCchHHHHHHHhh
Confidence            8999999999999999999999864

>TIGR01341 aconitase_1 aconitate hydratase 1

Probab=99.92  E-value=5e-25  Score=183.97  Aligned_cols=101  Identities=57%  Similarity=0.920  Sum_probs=90.1

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEe--cCC--eEEEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEV--DDG--RKFSVIL   77 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~--~~g--~~~~~~~   77 (102)
                      ++|||+||||+||+||||+|++|+|+|||+|+++++++++.++|+|.++|...+.++||+.+++..  .+|  .+|++.+
T Consensus       772 ~~lGv~avia~sf~rI~~~N~~~~Gilpl~~~~~~~~~~l~l~g~e~~~i~~~~~l~pg~~v~v~~~~~~g~~~~~~~~~  851 (876)
T TIGR01341       772 KLLGVKAVIAESFERIHRSNLVGMGVIPLQFPQGEDAETLGLTGDETIDIDGIKDLKPGKEVTVTFTNSKGEKITFKCVL  851 (876)
T ss_pred             HHhCCcEEEEccHHHHHHhhHhhcCcceEecCCCCCHHHhCCCCCCeEEEcCccccCCCCEEEEEEEcCCCCEEEEEEEE
Confidence            689999999999999999999999999999999999999998899999996333478898777654  367  5799999


Q ss_pred             cCCCHHHHHHHHhCChHHHHHHhhC
Q psy7216          78 RFDTEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        78 ~~~~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      ++||+.|++|+++||+|||++++++
T Consensus       852 r~dt~~E~~~~~~GGiL~yv~r~~~  876 (876)
T TIGR01341       852 RIDTEVELDYYKHGGILQYVLRKFL  876 (876)
T ss_pred             ecCCHHHHHHHHcCCHHHHHHHhhC
Confidence            9999999999999999999999975

This model represents one form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It is found in bacteria, archaea, and eukaryotic cytosol. It has been shown to act also as an iron-responsive element binding protein in animals and may have the same role in other eukaryotes.

>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type

Probab=99.92  E-value=4.6e-25  Score=180.99  Aligned_cols=98  Identities=31%  Similarity=0.457  Sum_probs=83.0

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEe--cCCCCCCCceEE-EEecCCeEEEEEe
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR--IPDDAKPHQKLQ-VEVDDGRKFSVIL   77 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~id--l~~~~~~g~~v~-~~~~~g~~~~~~~   77 (102)
                      ++++||+||||+||||||+|||+|+|+|||+|+++++++.++. ||+ ++|+  +++.+.+|+..+ .+.++|.++.+++
T Consensus       552 ~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~d~~~~~~i~~-Gd~-l~id~~l~~~~~~g~~~~i~~~~~g~~~~~~~  629 (658)
T TIGR01342       552 PMFLGVEAVIAKSFARIHHANLFNFGILPLEFDNEEDYAKFEL-GDD-IEIPDDLAAALADGEDEFTINKNDDEEALATL  629 (658)
T ss_pred             HHHHCCCEEEEecHHHHHHhhhhhcCcceEEecChhhHHHhCC-CCE-EEECchhhhhcCCCCceEEEEecCCeEEEEeC
Confidence            3689999999999999999999999999999997778988877 666 6887  776677885333 3446778888887


Q ss_pred             cCCCHHHHHHHHhCChHHHHHHhh
Q psy7216          78 RFDTEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        78 ~~~~~~e~~ii~aGGll~~~~~~~  101 (102)
                      ++ |++|++|+++||++||++++.
T Consensus       630 ~l-~~~e~ei~~aGGlln~~~~~~  652 (658)
T TIGR01342       630 DA-SEREKEILAAGGKLNLIKNKH  652 (658)
T ss_pred             CC-CHHHHHHHHcCCHHHHHHHhh
Confidence            67 999999999999999999875

This model represents a small family of proteins homologous (and likely functionally equivalent to) aconitase 1. Members are found, so far in the anaerobe Clostridium acetobutylicum, in the microaerophilic, early-branching bacterium Aquifex aeolicus, and in the halophilic archaeon Halobacterium sp. NRC-1. No member is experimentally characterized.

>PRK00439 leuD 3-isopropylmalate dehydratase small subunit; Reviewed

Probab=99.91  E-value=8.1e-25  Score=153.68  Aligned_cols=89  Identities=24%  Similarity=0.442  Sum_probs=73.4

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      ++++|++||||+||||||+|||+|+|+||+++++  +++.++. | +.++||+.+    + .| .+.++|+++++. ++ 
T Consensus        71 l~~~Gi~aVIA~SFa~If~rN~~n~Gll~i~~~~--~~~~l~~-g-d~i~idl~~----~-~v-~~~~~g~~~~f~-~l-  138 (163)
T PRK00439         71 LKAAGVSAVIAKSFARIFYRNAINIGLPVLECDE--AVDKIED-G-DEVEVDLET----G-VI-TNLTTGEEYKFK-PI-  138 (163)
T ss_pred             HHHHCCCeEEEehHHHHHHhhHHhcCCCeEEchh--HHHhcCC-C-CEEEEECCC----C-EE-EeCCCCeEEEEe-eC-
Confidence            4689999999999999999999999999999975  4777754 4 569999753    4 34 233558888887 46 


Q ss_pred             CHHHHHHHHhCChHHHHHHhh
Q psy7216          81 TEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~  101 (102)
                      |+++++++++||++||++++.
T Consensus       139 ~~~~~~il~aGGl~~~~~~~~  159 (163)
T PRK00439        139 PEFMLEILKAGGLIEYLKKKG  159 (163)
T ss_pred             CHHHHHHHHcCCHHHHHHHhc
Confidence            999999999999999999874

>TIGR02084 leud 3-isopropylmalate dehydratase, small subunit

Probab=99.91  E-value=1.1e-24  Score=152.08  Aligned_cols=87  Identities=24%  Similarity=0.483  Sum_probs=69.6

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      ++++||+||||+||||||+|||+|+|+|++++  +..++.++. | +.++||+++    + +| .+.++|++++++ ++ 
T Consensus        70 l~~~Gi~aVIA~SFarIf~rN~iN~GLp~~~~--~~~~~~l~~-g-d~i~idl~~----~-~v-~~~~~g~~~~~~-~~-  137 (156)
T TIGR02084        70 IKASGISCVIAKSFARIFYRNAINIGLPIVES--EEAVDEIEE-G-DEVEVDLEK----G-II-KNLTKGKEYKAT-PF-  137 (156)
T ss_pred             HHHhCCCEEEEehHHHHHHhhhhhCCCCeecC--HHHHHHhCC-C-CEEEEECCC----C-EE-EEecCCEEEEee-cC-
Confidence            46899999999999999999999999744433  346777764 5 459999853    4 23 345678999998 47 


Q ss_pred             CHHHHHHHHhCChHHHHHH
Q psy7216          81 TEVDILYYKHGGILNYMIR   99 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~   99 (102)
                      |+++++++++|||++|+++
T Consensus       138 ~~~~~~il~~GGl~~~~~~  156 (156)
T TIGR02084       138 PEFLQKIMKAGGLLNYVKK  156 (156)
T ss_pred             CHHHHHHHHcCCHHHHhhC
Confidence            9999999999999999874

Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The members of the seed for this model are those sequences which are gene clustered with other genes involved in leucine biosynthesis and include some archaea.

>KOG0452|consensus

Probab=99.91  E-value=1.8e-25  Score=180.01  Aligned_cols=101  Identities=69%  Similarity=1.149  Sum_probs=95.3

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCC-CCCCceEEEEecCCeEEEEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDD-AKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~-~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      .++||+||||+||+||||+|++.|||+||+|..+++.|.+.+.|.|.++|.+.+. ++||+.++++.++|+.|.+.+++|
T Consensus       791 ~LlGvKAViaeS~ErIHrsnLvGmGIiPl~f~~Ge~AdtLgLtG~E~yti~lP~~~lkPgq~i~v~~dtGk~F~~~~rFd  870 (892)
T KOG0452|consen  791 FLLGVKAVIAESYERIHRSNLVGMGIIPLQFLPGEDADTLGLTGRERYTIHLPENILKPGQDITVTTDTGKVFVCTLRFD  870 (892)
T ss_pred             hhhhhHHHHHHHHHHHHhhccccceeeeeeecCCCChhhcCcccceeEEEECCcccCCCCceEEEEecCCcEEEEEEEec
Confidence            3689999999999999999999999999999999999999999999999999887 999998887777899999999999


Q ss_pred             CHHHHHHHHhCChHHHHHHhhC
Q psy7216          81 TEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      ++.|+.++++||+|||+.++|+
T Consensus       871 teVeltyy~~GGiL~y~iRk~~  892 (892)
T KOG0452|consen  871 TEVELTYYKNGGILNYMIRKLS  892 (892)
T ss_pred             ceEEEEEEecCCcHHHHHhhcC
Confidence            9999999999999999999874

>PRK07229 aconitate hydratase; Validated

Probab=99.90  E-value=5.9e-24  Score=174.36  Aligned_cols=97  Identities=33%  Similarity=0.523  Sum_probs=80.3

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEE-ecCCCCCCCceEEEE-ecCCeEEEEEec
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTI-RIPDDAKPHQKLQVE-VDDGRKFSVILR   78 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~i-dl~~~~~~g~~v~~~-~~~g~~~~~~~~   78 (102)
                      ++++||+||||+|||||||||++|+|+|||+|+++++++.++. | |.++| |+++.. ++.++++. .++|++++++++
T Consensus       546 ~~~lGv~aVIA~SFarIf~~N~in~Gllpl~~~~~~~~~~l~~-g-d~i~i~dl~~~~-~~~~v~v~~~~~~~~~~~~~~  622 (646)
T PRK07229        546 PRYLGVKAVLAKSFARIHKANLINFGILPLTFADPADYDKIEE-G-DVLEIEDLREFL-PGGPLTVVNVTKDEEIEVRHT  622 (646)
T ss_pred             HHHHCCCEEEEeCHHHHHHhhHHhcCCceEEecChHhHhhcCC-C-CEEEEccchhcC-CCCeEEEEEecCCEEEEEEcc
Confidence            3689999999999999999999999999999977677887765 4 56888 776533 44444443 356789999878


Q ss_pred             CCCHHHHHHHHhCChHHHHHHhh
Q psy7216          79 FDTEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        79 ~~~~~e~~ii~aGGll~~~~~~~  101 (102)
                      + |++|++|+++||++||+++++
T Consensus       623 l-~~~e~~i~~aGGll~~~~~~~  644 (646)
T PRK07229        623 L-SERQIEILLAGGALNLIKKKL  644 (646)
T ss_pred             C-CHHHHHHHHcCCHHHHHHHhc
Confidence            8 999999999999999999975

>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit

Probab=99.90  E-value=6.7e-24  Score=147.85  Aligned_cols=85  Identities=22%  Similarity=0.483  Sum_probs=69.0

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      ++++|++||||+||||||+|||+|+|+||+++++    +.++. | +.++||+.+    + +|+  .++|+++++. ++ 
T Consensus        70 l~~~Gi~aVIA~SFa~If~rN~in~Glp~i~~~~----~~i~~-g-d~i~vdl~~----~-~v~--~~~g~~~~~~-~l-  134 (154)
T TIGR02087        70 LKAAGIAAVIAESFARIFYRNAINIGLPLIEAKT----EGIKD-G-DEVTVDLET----G-EIR--VNGNEEYKGE-PL-  134 (154)
T ss_pred             HHHhCCCEEEeehHHHHHHhhhhhcCCCcEecCH----HHCCC-C-CEEEEECCC----C-EEE--ECCCeEEEEe-CC-
Confidence            4679999999999999999999999998887764    34443 4 458999853    3 343  4677888885 46 


Q ss_pred             CHHHHHHHHhCChHHHHHHh
Q psy7216          81 TEVDILYYKHGGILNYMIRK  100 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~  100 (102)
                      |+.+++++++||++||++++
T Consensus       135 ~~~~~~i~~aGGl~~~~~~~  154 (154)
T TIGR02087       135 PDFLLEILREGGLLEYLKKR  154 (154)
T ss_pred             CHHHHHHHHcCCHHHHHhcC
Confidence            99999999999999999975

This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.

>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent

Probab=99.90  E-value=1.6e-23  Score=174.64  Aligned_cols=99  Identities=39%  Similarity=0.752  Sum_probs=88.3

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEe--cCC--eEEEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEV--DDG--RKFSVIL   77 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~--~~g--~~~~~~~   77 (102)
                      +++|++||||+||+|||++||+|+|+|||+|.++++++++.++|+|.++|. . .++||+++++.+  .+|  .+|++.+
T Consensus       755 ~~lGv~avia~sf~rI~~~Nl~~~G~lpl~f~~~~~~~~l~l~g~e~~~i~-~-~~~p~~~~~v~~~~~~g~~~~~~~~~  832 (858)
T TIGR02333       755 RLAGVEAIVAEGFERIHRTNLVGMGVLPLEFKPGTNRHTLGLDGTETFDVV-G-EITPRADLTLVVTRKNGEKLEVPVTC  832 (858)
T ss_pred             HHhCceEEEEccHHHHHHhhhhhcCcceEEeCCCCChhhcCCCCCeeEEec-c-CCCCCCeEEEEEEeCCCCEEEEEEEE
Confidence            689999999999999999999999999999999999999988899988883 2 367898877765  467  4789999


Q ss_pred             cCCCHHHHHHHHhCChHHHHHHhhC
Q psy7216          78 RFDTEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        78 ~~~~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      ++||+.|++|+++||+|||+.++++
T Consensus       833 r~dt~~ei~y~~~GgiL~~v~~~~~  857 (858)
T TIGR02333       833 RLDTAEEVSVYEAGGVLQRFAQDFL  857 (858)
T ss_pred             EcCCHHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999875

Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) (PubMed:12473114).

>PRK14023 homoaconitate hydratase small subunit; Provisional

Probab=99.89  E-value=1.6e-23  Score=147.47  Aligned_cols=86  Identities=31%  Similarity=0.488  Sum_probs=70.7

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      ++++|++||||+||||||++||+|+|+||++++  ++++.++. | +.++||+.+    + +++   .+|+++++.+ + 
T Consensus        72 l~~~Gi~aVIA~SFa~If~rN~~n~Gll~~~~~--~~~~~l~~-g-d~i~vDl~~----~-~v~---~~g~~~~~~~-~-  137 (166)
T PRK14023         72 LKMLGIGAIIAKSYARIFYRNLVNLGIPPFESE--EVVDALED-G-DEVELDLET----G-VLT---RGGETFQLRP-P-  137 (166)
T ss_pred             HHHHCCCEEEEehHHHHHHhhhhhcCCCccCCH--HHHHHhCC-C-CEEEEECCC----C-EEE---ECCEEEEEee-C-
Confidence            367999999999999999999999999998753  35777764 5 459999863    3 332   3678888886 4 


Q ss_pred             CHHHHHHHHhCChHHHHHHh
Q psy7216          81 TEVDILYYKHGGILNYMIRK  100 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~  100 (102)
                      ++++++++++|||++|++++
T Consensus       138 ~~~~~~il~aGGl~~~~~~~  157 (166)
T PRK14023        138 PEFLLEALKEGSILEYYRKH  157 (166)
T ss_pred             CHHHHHHHHcCCHHHHHHHh
Confidence            99999999999999999985

>PLN00072 3-isopropylmalate isomerase/dehydratase small subunit; Provisional

Probab=99.89  E-value=3.1e-23  Score=153.13  Aligned_cols=88  Identities=27%  Similarity=0.376  Sum_probs=70.1

Q ss_pred             CcccCeeEEEecchhhhhhhccccCc-cceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMG-IAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRF   79 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~G-ilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~   79 (102)
                      ++++||+||||+||||||+||++|+| ++|++.+ ...++.++. || .++||+++    + .| .+.++|++|.+++ .
T Consensus       152 L~~~GI~aVIA~SFArIF~rN~iN~GLllpi~~~-~~~~e~i~~-Gd-~i~VDl~~----~-~v-~n~t~g~~~~~~p-~  221 (246)
T PLN00072        152 LGAAGAKAVVAESYARIFFRNSVATGEVYPLESE-VRICEECKT-GD-VVTVELGN----S-VL-INHTTGKEYKLKP-I  221 (246)
T ss_pred             HHHcCCCEEEECcHHHHHHHHHHhCCcceeeccc-HHHHHhcCC-CC-EEEEECCC----C-EE-EECCCCeEEEecC-C
Confidence            46899999999999999999999999 7888753 345676664 54 58999852    3 23 4457889998876 2


Q ss_pred             CCHHHHHHHHhCChHHHHHHh
Q psy7216          80 DTEVDILYYKHGGILNYMIRK  100 (102)
Q Consensus        80 ~~~~e~~ii~aGGll~~~~~~  100 (102)
                       + .+++++++|||++|++++
T Consensus       222 -~-~~~~Il~aGGl~~y~r~~  240 (246)
T PLN00072        222 -G-DAGPVIDAGGIFAYARKT  240 (246)
T ss_pred             -H-HHHHHHHcCCHHHHHHhh
Confidence             4 499999999999999986

>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial

Probab=99.87  E-value=2.5e-22  Score=166.55  Aligned_cols=94  Identities=27%  Similarity=0.446  Sum_probs=76.5

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCC--CCceEEEEe--cCC--eEEEE
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAK--PHQKLQVEV--DDG--RKFSV   75 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~--~g~~v~~~~--~~g--~~~~~   75 (102)
                      ++|||+||||+|||||||+||+|+|+|||+|.++++++.+.. ||+...+++++...  +++.+++.+  .+|  .++++
T Consensus       646 ~~lGv~aVIA~SFaRI~~~Nlin~Gilpl~~~~~~~~~~i~~-gd~~~~~~l~~~~~~~~~~~~~~~i~~~~g~~~~~~~  724 (745)
T TIGR01340       646 RHLGGRIIITKSFARIHETNLKKQGVLPLTFANEADYDKIQP-GDEVATLNLYEMLKNGGGGEVDLRVTKKNGKVFEIKL  724 (745)
T ss_pred             HHhCCcEEEEehHHHHHHhhhhhcCceeEEecCCccHhhcCC-CCEEEEcChhhccccCCCCeEEEEEEeCCCcEEEEEE
Confidence            689999999999999999999999999999987788988875 77765555655432  255565443  345  57888


Q ss_pred             EecCCCHHHHHHHHhCChHHHH
Q psy7216          76 ILRFDTEVDILYYKHGGILNYM   97 (102)
Q Consensus        76 ~~~~~~~~e~~ii~aGGll~~~   97 (102)
                      .+++ |+.|++|+++||+|||+
T Consensus       725 ~~~l-t~~E~~~~~aGGiLny~  745 (745)
T TIGR01340       725 KHTV-SKDQIGFFKAGSALNLM  745 (745)
T ss_pred             EeeC-CHHHHHHHHcCCcccCC
Confidence            8888 99999999999999985

This model represents mitochondrial forms of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase.

>PRK11413 putative hydratase; Provisional

Probab=99.83  E-value=7.6e-21  Score=157.59  Aligned_cols=93  Identities=20%  Similarity=0.293  Sum_probs=68.3

Q ss_pred             cccCeeEEEecchhhhhhh-ccccCccceEEeCCCCChhhhccCCCeEEEEec-CCCCCCCc-eEEEEe--cCC--eEEE
Q psy7216           2 LFQGVKAVIAESYERIHRS-NLVGMGIAPLQFLPGENADSLKLTGKERYTIRI-PDDAKPHQ-KLQVEV--DDG--RKFS   74 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~-N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl-~~~~~~g~-~v~~~~--~~g--~~~~   74 (102)
                      |+||++||||+||||||+| |++|+|||||+|++.   ..++. | |.++|+. ++.+..+. .++..+  .+|  +.++
T Consensus       651 r~LGi~AVIAkSFARIf~RsNlIN~GilpL~f~~~---~~i~~-G-D~l~id~~~~~l~~~~~~~~~~i~~~~~~~~~~~  725 (751)
T PRK11413        651 RVLGGLANIAEEYATKRYRSNVINWGMLPFQMAEE---PTFEV-G-DYIYIPGIRAALDNPGTTFKGYVIHEDAPVTEIT  725 (751)
T ss_pred             HHhCceEEEEeeehHHHHhhhhhhcCccceecCch---hhCCC-C-CEEEEechhhhhhcCCCceeEEEEeCCCceeeEE
Confidence            7899999999999999555 999999999999864   25554 4 5588884 34444332 233222  232  4566


Q ss_pred             EEe-cCCCHHHHHHHHhCChHHHHHHh
Q psy7216          75 VIL-RFDTEVDILYYKHGGILNYMIRK  100 (102)
Q Consensus        75 ~~~-~~~~~~e~~ii~aGGll~~~~~~  100 (102)
                      +.+ ++ |+++++|+++||++||++++
T Consensus       726 ~~~~~l-~~~~~eil~aGGllny~k~~  751 (751)
T PRK11413        726 LYMESL-TAEEREIIKAGCLINYNKNR  751 (751)
T ss_pred             EEeCCC-CHHHHHHHHcCCHHHHhhcC
Confidence            664 56 99999999999999999863

>TIGR00139 h_aconitase homoaconitase

Probab=99.82  E-value=1.6e-20  Score=155.00  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=70.4

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhcc------------CCCeEEEEecCCCCCCCceEEEEec
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKL------------TGKERYTIRIPDDAKPHQKLQVEVD   68 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~------------~gd~~~~idl~~~~~~g~~v~~~~~   68 (102)
                      ++++||+||||+|||||||||++|+|+||++|++  ..+.+..            .| +.+++|+++    |. | .+ +
T Consensus       605 l~~~Gi~~ViA~SFarIf~rN~iN~Gl~~l~~~~--~~~~l~~~~~~~~~~~~~~~G-d~l~vD~~~----g~-i-~~-t  674 (712)
T TIGR00139       605 ILAKGINLVVSGSFGNIFSRNSINNALLGLEIPA--LIKKLREKFGGADKELTRRTG-WFLKWDVAD----AK-I-EV-Q  674 (712)
T ss_pred             HHHcCCcEEEEchHHHHHHhHHHhcCCceEEchh--HHHHHHhhhcccccccccCCC-CEEEEEccC----CE-E-EE-C
Confidence            4689999999999999999999999999999985  3455541            25 458999863    43 3 33 5


Q ss_pred             CC----e---EEEEEecCCCHHHHHHHHhCChHHHHHHhh
Q psy7216          69 DG----R---KFSVILRFDTEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        69 ~g----~---~~~~~~~~~~~~e~~ii~aGGll~~~~~~~  101 (102)
                      +|    +   ++++.+ + +++.++++.+|||++|+++++
T Consensus       675 ~g~~~~~~~~~~~~~~-~-p~~~~eii~~GGl~~~~k~~~  712 (712)
T TIGR00139       675 EGSLDGGPILEHKVGE-L-GKNLQEIIAKGGLEGWVKNAI  712 (712)
T ss_pred             CCcccccceeEEEcCC-C-CHHHHHHHHcCCHHHHHHhcC
Confidence            55    3   666664 6 999999999999999999874

Homoaconitase, aconitase, and 3-isopropylmalate dehydratase have similar overall structures, but 3-isopropylmalate dehydratase is split into large (leuC) and small (leuD) chains in eubacteria. Several pairs of archaeal proteins resemble leuC and leuD over their lengths but are even closer to the respective domains of homoaconitase, and their identity is uncertain.

>COG0066 LeuD 3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]

Probab=99.80  E-value=9.7e-20  Score=129.94  Aligned_cols=90  Identities=16%  Similarity=0.256  Sum_probs=66.3

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhh-hccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADS-LKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRF   79 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~-~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~   79 (102)
                      ++.+|++||||+|||||||+||+|+|+||+..+++ +.+. ++...++.++||+++    + .|  ...++.++.+  ++
T Consensus        85 Lk~~Gi~~VIA~SFAdIFy~Na~nnG~Lpi~~~~~-~~~~l~~~~~g~~i~VDL~~----~-~v--~~~~~~~~~f--~i  154 (191)
T COG0066          85 LKDYGIRAVIAPSFADIFYRNAINNGLLPIVLAEE-DVTELFEDVPGDEVTVDLET----G-EV--TNPTGGEEPF--EI  154 (191)
T ss_pred             HHHcCeeEEEeccHHHHHhhhhhhcCcCceecChH-HHHHHHHhCCCCEEEEEcCC----C-eE--EeCCCCEEEc--cC
Confidence            35789999999999999999999999999987653 2323 322134569999863    3 23  2233444443  46


Q ss_pred             CCHHHHHHHHhC----ChHHHHHHhh
Q psy7216          80 DTEVDILYYKHG----GILNYMIRKM  101 (102)
Q Consensus        80 ~~~~e~~ii~aG----Gll~~~~~~~  101 (102)
                       +++.++++.+|    ||+.|.+++.
T Consensus       155 -~~f~~~~L~~GlD~iGlt~~~~~~i  179 (191)
T COG0066         155 -DDFRREILLNGLDDIGLTLQHKKEI  179 (191)
T ss_pred             -CHHHHHHHHcCCcccchHHHHHHHH
Confidence             99999999999    9999998753

>cd01578 AcnA_Mitochon_Swivel Mitochondrial aconitase A swivel domain

Probab=99.72  E-value=2.8e-18  Score=118.69  Aligned_cols=56  Identities=30%  Similarity=0.526  Sum_probs=46.0

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEe-cCCCCCCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR-IPDDAKPH   60 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~id-l~~~~~~g   60 (102)
                      +++|++||||+||||||++||+|+|+|||+|+++++++.++.  +|.+++. ++ .++||
T Consensus        93 ~~lGv~aVIA~SFarI~~~Nlin~Gilpl~f~~~~~~~~i~~--gd~i~i~~l~-~l~pg  149 (149)
T cd01578          93 RHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYDKIHP--DDKVDILGLT-DFAPG  149 (149)
T ss_pred             HHhCCCEEEEecHHHHHHHHHHhcCCceEEecChHHHHhcCC--CCEEEEecCc-cCCCC
Confidence            689999999999999999999999999999998888888754  4557775 43 24443

Aconitase (also known as aconitate hydratase and citrate hydro-lyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. In eukaryotes two isozymes of aconitase are known to exist: one found in the mitochondrial matrix and the other found in the cytoplasm. This is the mitochondrial form. The mitochondrial product is coded by a nuclear gene. Most members of this subfamily are mitochondrial but there are some bacterial members.

>PRK14812 hypothetical protein; Provisional

Probab=99.69  E-value=3.1e-17  Score=110.06  Aligned_cols=79  Identities=22%  Similarity=0.258  Sum_probs=56.5

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhh-ccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL-KLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRF   79 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~-~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~   79 (102)
                      ++.+|++||||+|||+||++||+|+|+||++++++ ..+.+ +.+.++.++||+.+     ++|+   ..+.++++.+  
T Consensus        13 L~~~Gi~aVIA~SFa~IF~~N~~nnGllpi~~~~~-~~~~l~~~~~g~~i~vDL~~-----~~v~---~~~~~~~f~i--   81 (119)
T PRK14812         13 LADYGFKVVIAGSFGDIHYNNELNNGMLPIVQPRE-VREKLAQLKPTDQVTVDLEQ-----QKII---SPVEEFTFEI--   81 (119)
T ss_pred             HHHcCCCEEEEchHHHHHHhHHHHCCCCcccCCHH-HHHHHhccCCCCEEEEEcCC-----CEEE---cCCeEEEEEE--
Confidence            36789999999999999999999999999987753 34533 22355679999863     3332   2446777764  


Q ss_pred             CCHHHHHHHHhC
Q psy7216          80 DTEVDILYYKHG   91 (102)
Q Consensus        80 ~~~~e~~ii~aG   91 (102)
                       ++..+..+.+|
T Consensus        82 -~~~~~~~Ll~G   92 (119)
T PRK14812         82 -DSEWKHKLLNS   92 (119)
T ss_pred             -CHHHHHHHHhC
Confidence             55666666655

>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit

Probab=99.69  E-value=3.8e-17  Score=117.11  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=60.7

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhh----ccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEE
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL----KLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVI   76 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~----~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~   76 (102)
                      ++.+||+||||+|||||||+||+|+|+||++++.. +...+    . +.++.++||+.+     .+|+  ..+|+++++.
T Consensus        92 L~~~Gi~aVIA~SFa~IF~rN~~nnGll~i~~~~~-~i~~~~~~~~-~~g~~i~vDl~~-----~~v~--~~~~~~~~f~  162 (188)
T TIGR00171        92 LDDYGFKVIIAPSFADIFYNNSFKNGLLPIRLSYD-EVKELFGQVE-NQGLQMTVDLEN-----QLIH--DSEGKVYSFE  162 (188)
T ss_pred             HHHcCCCEEEechHHHHHHHHHHHCCCCccccCHH-HHHHHHHHhh-CCCCEEEEECCC-----CEEE--eCCCeEEEEE
Confidence            46789999999999999999999999999999853 23332    2 345679999863     3333  2456778887


Q ss_pred             ecCCCHHHHHHHHhC
Q psy7216          77 LRFDTEVDILYYKHG   91 (102)
Q Consensus        77 ~~~~~~~e~~ii~aG   91 (102)
                        + +++.++.+-+|
T Consensus       163 --i-~~~~r~~ll~G  174 (188)
T TIGR00171       163 --I-DPFRKHCLING  174 (188)
T ss_pred             --e-CHHHHHHHHcC
Confidence              4 89999999888

Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.

>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional

Probab=99.69  E-value=4.1e-17  Score=117.92  Aligned_cols=79  Identities=19%  Similarity=0.292  Sum_probs=60.8

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhh----ccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEE
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL----KLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVI   76 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~----~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~   76 (102)
                      ++.+||+||||+||+|||++||+|+|+||+++++. +++.+    ..+.++.++||+.+    + +|+   ..|+++++.
T Consensus        90 l~~~Gi~aVIA~SFa~IF~rN~~n~Gll~i~~~~~-~i~~l~~~~~~~~g~~i~vDl~~----~-~v~---~~~~~~~f~  160 (200)
T PRK01641         90 LADYGFRAVIAPSFADIFYNNCFKNGLLPIVLPEE-DVDELFKLVEANPGAELTVDLEA----Q-TVT---APDKTFPFE  160 (200)
T ss_pred             HHHcCCCEEEechHHHHHHHHHHHCCCCeEeeCHH-HHHHHHHHHhcCCCCEEEEEcCC----C-EEe---cCCeEEEEE
Confidence            36789999999999999999999999999999742 33333    11345679999863    3 232   246777776


Q ss_pred             ecCCCHHHHHHHHhC
Q psy7216          77 LRFDTEVDILYYKHG   91 (102)
Q Consensus        77 ~~~~~~~e~~ii~aG   91 (102)
                        + +++.++++.+|
T Consensus       161 --i-~~~~~~~l~~G  172 (200)
T PRK01641        161 --I-DPFRRHCLLNG  172 (200)
T ss_pred             --c-CHHHHHHHHcC
Confidence              5 89999999999

>KOG0453|consensus

Probab=99.68  E-value=4.2e-17  Score=132.27  Aligned_cols=97  Identities=29%  Similarity=0.498  Sum_probs=79.1

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEe--cCCeEEEEEecC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEV--DDGRKFSVILRF   79 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~--~~g~~~~~~~~~   79 (102)
                      +++|+++||.+||||||.+|++++|+|||+|.++.+|+++..  .+.+++.-..++.+|+++++.+  .+|++++.++.+
T Consensus       676 r~lGg~~ii~kSFarIhetNlkkqglLpLtfanpadydKi~~--~d~~~~~~L~~~~~gkp~t~~vt~~dg~~~~~kl~h  753 (778)
T KOG0453|consen  676 RHLGGRAIITKSFARIHETNLKKQGLLPLTFANPADYDKIRP--ADKVSIKGLTRRTPGKPLTVVVTKKDGKEVEIKLNH  753 (778)
T ss_pred             hhcCCcEEEeehhHHHHHhhhhhcceeeeeccCHHHhhhcCh--hcccchhhhhhhcCCCceeEEEECCCCcEEEEeccc
Confidence            689999999999999999999999999999998889998863  4556666444567888777665  367765555544


Q ss_pred             C-CHHHHHHHHhCChHHHHHHh
Q psy7216          80 D-TEVDILYYKHGGILNYMIRK  100 (102)
Q Consensus        80 ~-~~~e~~ii~aGGll~~~~~~  100 (102)
                      . ++.|.+|+++|..+|++++.
T Consensus       754 t~n~~Qi~~fkaGsaln~~~e~  775 (778)
T KOG0453|consen  754 TGNKLQIEWFKAGSALNVMKEL  775 (778)
T ss_pred             ccchhhhHhhhcchHHHHHHHh
Confidence            4 89999999999999998863

>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain

Probab=99.68  E-value=1.7e-17  Score=111.62  Aligned_cols=51  Identities=37%  Similarity=0.763  Sum_probs=43.2

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEec
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRI   53 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl   53 (102)
                      ++.+|++||||+||+|||+|||+|+|+||+++++++.++.++. || .++||+
T Consensus        71 l~~~Gi~aVIA~SFa~If~rN~in~Gll~i~~~~~~~~~~~~~-gd-~i~id~  121 (121)
T cd01579          71 PMYLGVRAVLAKSFARIHRANLINFGILPLTFADEDDYDRFEQ-GD-QLELPL  121 (121)
T ss_pred             HHHHCCCEEEEccHHHHHHhHHhhcCcceEEecChhhHhhcCC-CC-EEEcCC
Confidence            4679999999999999999999999999999987667777665 54 477764

Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.

>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated

Probab=99.67  E-value=1.9e-16  Score=132.27  Aligned_cols=81  Identities=17%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             eeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeE-EEEEecCCCHHH
Q psy7216           6 VKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRK-FSVILRFDTEVD   84 (102)
Q Consensus         6 v~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~-~~~~~~~~~~~e   84 (102)
                      +++|||+|||||||+|++|+|+||++|+    ++.++. || .++||+.+    |. + .+ ++|+. +++.+  .++++
T Consensus       260 g~~VIa~SfArIFf~Nain~GlLpIe~d----~~~i~~-Gd-~i~Id~~~----g~-I-~~-~~g~~~~~f~l--~p~~~  324 (835)
T PRK09238        260 GGVVLGGKIAPIFFNTMEDSGALPIELD----VSKLNM-GD-VIDIYPYK----GK-I-RN-ETGEVIATFKL--KTDVL  324 (835)
T ss_pred             EEEEEeCchHHHHHhhhHHcCCceEEeC----HHHcCC-CC-EEEEECCC----CE-E-Ee-CCCeEEEEEec--CcHHH
Confidence            4999999999999999999999999995    566654 54 58999753    42 3 22 45543 66654  38999


Q ss_pred             HHHHHhCChHHHHHHhh
Q psy7216          85 ILYYKHGGILNYMIRKM  101 (102)
Q Consensus        85 ~~ii~aGGll~~~~~~~  101 (102)
                      +++++|||++||++.|-
T Consensus       325 ~div~AGGli~~i~gr~  341 (835)
T PRK09238        325 LDEVRAGGRIPLIIGRG  341 (835)
T ss_pred             HHHHHcCChHHHHHhcc
Confidence            99999999999998764

>cd01580 AcnA_IRP_Swivel Aconitase A swivel domain

Probab=99.67  E-value=3.5e-17  Score=115.06  Aligned_cols=51  Identities=78%  Similarity=1.144  Sum_probs=47.4

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR   52 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~id   52 (102)
                      +++|++||||+||+|||++||+|+|+|||+|+++++++.+.++|+|.++|.
T Consensus       120 ~~lGi~aVIA~SFarI~~~Nli~~Gllpl~~~~~~~~~~l~l~g~e~~~i~  170 (171)
T cd01580         120 FLLGVKAVIAESFERIHRSNLVGMGILPLQFPPGENADSLGLTGEETYDII  170 (171)
T ss_pred             HHhCCCEEEEccHHHHHHhhHhhcCcceEEeCCccCHHhhCCCCceeEEee
Confidence            679999999999999999999999999999999999999998899887764

This is the major form of the TCA cycle enzyme aconitate hydratase, also known as aconitase and citrate hydro-lyase. It includes bacterial and archaeal aconitase A, and the eukaryotic cytosolic form of aconitase. This group also includes sequences that have been shown to act as an iron-responsive element (IRE) binding protein in animals and may have the same role in other eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.

>cd00404 Aconitase_swivel Aconitase swivel domain

Probab=99.66  E-value=5e-17  Score=103.96  Aligned_cols=50  Identities=38%  Similarity=0.555  Sum_probs=42.6

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEe
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR   52 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~id   52 (102)
                      ++++|+++|||+||+|||+||++|+|+||++|++..+++.++. | |.+++|
T Consensus        38 l~~~Gi~aVia~sfa~If~rN~~n~Gll~l~~~~~~~~~~i~~-g-d~l~id   87 (88)
T cd00404          38 LRLLGGRAVIAKSFARIFFRNLVDQGLLPLEFADPEDYLKLHT-G-DELDIY   87 (88)
T ss_pred             HHHhCCCEEEEeCHHHHHHhhHHhcCCceEEecCcchhhhcCC-C-CEEEeC
Confidence            4689999999999999999999999999999997767777754 4 446665

Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.

>TIGR00117 acnB aconitate hydratase 2

Probab=99.60  E-value=2.6e-15  Score=125.52  Aligned_cols=84  Identities=15%  Similarity=0.180  Sum_probs=66.6

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeE-EEEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRK-FSVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~-~~~~~~~~   80 (102)
                      |.+| .+|||+|||||||||++|.|+||++++    .+.++. || .++||+.+    |. + .+. +|++ +++.+ + 
T Consensus       258 k~~G-~~Via~sfArIFfrnain~Gl~~ie~~----~~~l~~-GD-~i~Id~~~----G~-I-~n~-~g~~~~~f~~-~-  321 (844)
T TIGR00117       258 KRGG-GLCLGGKIAPIFFNTMEDSGALPIEVD----VSNLNM-GD-VIDIYPYK----GE-I-TNH-EGELLATFEL-K-  321 (844)
T ss_pred             cccc-ceEEeccChHhhhcchhhcCCCeEEeC----HhhcCC-CC-EEEEECCC----CE-E-EeC-CCCEEEEeee-C-
Confidence            5688 999999999999999999999999986    445554 54 58999853    53 2 333 4554 88865 4 


Q ss_pred             CHHHHHHHHhCChHHHHHHhh
Q psy7216          81 TEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~  101 (102)
                      |++.+++++|||++||+.-|-
T Consensus       322 p~~l~div~AGGli~~i~gr~  342 (844)
T TIGR00117       322 PETLLDEVRAGGRIPLIIGRG  342 (844)
T ss_pred             CHHHHHHHHcCCchhhhhccc
Confidence            899999999999999987653

Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.

>PLN00094 aconitate hydratase 2; Provisional

Probab=99.57  E-value=6.1e-15  Score=123.75  Aligned_cols=85  Identities=16%  Similarity=0.144  Sum_probs=69.0

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEE-EEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKF-SVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~-~~~~~~~   80 (102)
                      |.+|+.| ||+|||||||||++|.|+||++|+    .+.++. || .++||..+    |.  +.+.++|+++ ++++ + 
T Consensus       329 K~~G~~~-ia~sfArIFfrnain~G~~~Ie~~----v~~i~~-GD-~I~id~~~----G~--I~n~~~g~~~~~f~~-~-  393 (938)
T PLN00094        329 KRTGGVC-IGGKIAPIFFNTMEDSGALPIEMD----VKNLNM-GD-VIDIYPYE----GV--VKRHGTDEVITTFSL-K-  393 (938)
T ss_pred             ccccceE-eeceecHHHhhchhhcCCceEecc----HhhcCC-CC-EEEEEcCC----CE--EEecCCCeEEEeccC-C-
Confidence            5689999 999999999999999999999986    445554 55 58999763    63  3445678888 7764 5 


Q ss_pred             CHHHHHHHHhCChHHHHHHhh
Q psy7216          81 TEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~  101 (102)
                      |++.+++++|||++||++-|-
T Consensus       394 p~~l~d~vrAGGli~~i~gr~  414 (938)
T PLN00094        394 TPVLLDEVRAGGRIPLIIGRG  414 (938)
T ss_pred             ChHHHHHHHcCCcHhhhhccc
Confidence            999999999999999998753

>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins

Probab=99.56  E-value=1.3e-15  Score=97.97  Aligned_cols=52  Identities=23%  Similarity=0.433  Sum_probs=39.3

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEec
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRI   53 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl   53 (102)
                      ++++|+++|||+||+|||++|++|+|++|+++.++...+ ...+.++.+++|+
T Consensus        40 l~~~Gi~avia~sFa~If~~N~~n~Gllp~~~~~~~~~~-~~~~~g~~i~vdl   91 (91)
T cd01577          40 LKDAGIRAVIAESFARIFFRNAINNGLLPVTLADEDVEE-VEAKPGDEVEVDL   91 (91)
T ss_pred             HHHhCCCEEEEchHHHHHHhhHhhCCCcceeeChhhhhH-hhcCCCCEEEEeC
Confidence            467999999999999999999999999999887643332 2222344577663

3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.

>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain

Probab=99.52  E-value=3.2e-15  Score=101.84  Aligned_cols=34  Identities=47%  Similarity=0.765  Sum_probs=29.9

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLP   34 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~   34 (102)
                      ++.+||+||||+||+|||++||+|+||||+++++
T Consensus        97 l~~~Gi~aVIA~SFa~If~~N~~n~Gllpl~~~~  130 (131)
T PF00694_consen   97 LKDLGIRAVIAESFARIFRRNLINNGLLPLEFPE  130 (131)
T ss_dssp             HHHTTEEEEEESSB-HHHHHHHHHTT-EEEEESC
T ss_pred             HHHhCCeEEEechHHHHHHHHHHhCCceEEEecC
Confidence            3679999999999999999999999999999975

; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....

>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain

Probab=99.42  E-value=4e-14  Score=95.87  Aligned_cols=34  Identities=18%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLP   34 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~   34 (102)
                      ++.+||+||||+||||||+||++|+|+||+++++
T Consensus        68 l~~~Gi~~VIA~SFa~If~rN~iN~Gl~~i~~~~  101 (129)
T cd01674          68 LLAKGIPLVVSGSFGNIFSRNSINNALLSIELPF  101 (129)
T ss_pred             HHHcCccEEEechHHHHHHHhhHhcCCCeEechH
Confidence            4789999999999999999999999999999975

This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.

>cd01576 AcnB_Swivel Aconitase B swivel domain

Probab=99.22  E-value=9.7e-12  Score=84.72  Aligned_cols=44  Identities=18%  Similarity=0.231  Sum_probs=35.1

Q ss_pred             ccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEe
Q psy7216           3 FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIR   52 (102)
Q Consensus         3 ~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~id   52 (102)
                      .+|++||||+||||||+||++|+|+||++++    .+.++. | +.+++|
T Consensus        87 ~~g~~aVia~sfa~IF~rNa~n~Gl~~i~~~----~~~~~~-G-D~l~vD  130 (131)
T cd01576          87 KRAGGVVLGGKIAPIFFNTAEDSGALPIQLD----VSVLDM-G-DILNID  130 (131)
T ss_pred             cceEEEEEeCchhHHHHhhHHHcCCceEEeC----HHHcCC-C-CEEEeC
Confidence            4589999999999999999999999999986    334433 4 446665

Aconitate hydratase B is involved in energy metabolism as part of the TCA cycle. It catalyses the formation of cis-aconitate from citrate. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The domain structure of Aconitase B is different from other Aconitases in that he swivel domain that is found at N-terminus of B family is normally found at C-terminus for other Aconitases. In most members of the family, there is also a HEAT domain before domain 4, which is believed to play a role in protein-protein interaction.

>KOG0454|consensus

Probab=98.42  E-value=8.9e-08  Score=75.96  Aligned_cols=90  Identities=26%  Similarity=0.327  Sum_probs=55.3

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEE-EEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKF-SVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~-~~~~~~~   80 (102)
                      .+.|+++|+|+||+|||++|++.+|.+|..-+...-.+.... + +..++.+..+.  +. ..+++++|+.+ ++++ + 
T Consensus       370 ~~~GakaivA~Sya~IFfrN~~atG~l~~~~s~~~v~de~~~-~-dv~~v~l~~dg--~~-~~i~~t~~k~~f~lkP-~-  442 (502)
T KOG0454|consen  370 GAAGAKAIVAPSYARIFFRNSVATGELPPLPSEVRVCDECVT-G-DVYTVELSVDG--GN-QLINHTTGKVYFKLKP-F-  442 (502)
T ss_pred             hhcccceecchhHHHHHHHhHHhcCCccCCCceeeeccccee-c-ceeeEEcccCC--cc-eeeeeecccceeecCc-c-
Confidence            578999999999999999999999987764332222333322 3 34666665432  22 23556677665 5443 1 


Q ss_pred             CHHHHHHHHhCChHHHHHH
Q psy7216          81 TEVDILYYKHGGILNYMIR   99 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~   99 (102)
                       ..---..-+||+..|.++
T Consensus       443 -~~aclV~~ad~I~~~~~k  460 (502)
T KOG0454|consen  443 -GDACLVIDADGIFAYARK  460 (502)
T ss_pred             -cccCcccCchHHHHhhcc
Confidence             112224456777777665

>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4

Probab=97.17  E-value=0.0016  Score=47.26  Aligned_cols=80  Identities=18%  Similarity=0.235  Sum_probs=47.9

Q ss_pred             eEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCCHHHHH
Q psy7216           7 KAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDIL   86 (102)
Q Consensus         7 ~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~~~e~~   86 (102)
                      ..|+...+|.||+.-+---|-||++++    ...++. | +.++|+-.    .|+ + .+ .+|+. -....+.++...+
T Consensus        94 Gvv~G~~IAPIFfnT~edsGaLPIe~d----v~~l~~-G-dvi~I~p~----~gk-i-~~-~~gev-~~~f~l~p~~l~D  159 (204)
T PF06434_consen   94 GVVIGGKIAPIFFNTAEDSGALPIECD----VSSLNT-G-DVITIYPY----EGK-I-YK-ENGEV-ISTFELKPQTLLD  159 (204)
T ss_dssp             -EEEEEEE-HHHHHHHHHTT-EEEE-------TT--T-T--EEEEETT----TTE-E-EE-TT--E-EEE---S-TCHHH
T ss_pred             CeEECCEEcceEeccccccCCceEEEe----ccccCC-C-cEEEEecC----CcE-E-EC-CCCCE-EEEeecCchhHHH
Confidence            468888999999999999999999985    445554 5 45888864    353 2 22 45542 1222332566778


Q ss_pred             HHHhCChHHHHHHh
Q psy7216          87 YYKHGGILNYMIRK  100 (102)
Q Consensus        87 ii~aGGll~~~~~~  100 (102)
                      -++|||-++.+.-|
T Consensus       160 evrAGGri~LiiGR  173 (204)
T PF06434_consen  160 EVRAGGRIPLIIGR  173 (204)
T ss_dssp             HHHHTSHHHHHHHH
T ss_pred             HHhcCCcEEEEech
Confidence            99999999988654

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>COG1049 AcnB Aconitase B [Energy production and conversion]

Probab=80.03  E-value=1.7  Score=36.97  Aligned_cols=77  Identities=17%  Similarity=0.272  Sum_probs=50.7

Q ss_pred             EEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCCHHHHHHH
Q psy7216           9 VIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILYY   88 (102)
Q Consensus         9 VIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~~~e~~ii   88 (102)
                      |+..-.|.||+..+---|-+|++++.    ..++. | +.++|+-.    .|+ + ++..+|+.+. .+.+-|+..++-+
T Consensus       264 vlG~~IaPIFfnT~ed~GalPI~~dv----~~l~~-G-dvi~i~py----~gk-i-~~~~~ge~v~-~f~lkt~~lldev  330 (852)
T COG1049         264 VLGGKIAPIFFNTMEDAGALPIEVDV----SNLEM-G-DVIDIYPY----EGK-I-RNNNTGEVVA-TFSLKTDVLLDEV  330 (852)
T ss_pred             eecCeecceeeeehhhcCCCceEeee----ccccc-c-ceEEeecc----CCe-e-eccCCCcEEE-EeecCchhHHHHH
Confidence            45556788999999999999998853    34444 5 55788743    254 2 3333455322 2233389999999


Q ss_pred             HhCChHHHHH
Q psy7216          89 KHGGILNYMI   98 (102)
Q Consensus        89 ~aGGll~~~~   98 (102)
                      +|||-++.+.
T Consensus       331 rAGgriplii  340 (852)
T COG1049         331 RAGGRIPLII  340 (852)
T ss_pred             hcCCceeEEE
Confidence            9999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
2b3x_A	888	Structure Of An Orthorhombic Crystal Form Of Human		1e-36
3snp_A	908	Crystal Structure Analysis Of Iron Regulatory Prote		6e-36
1nis_A	754	Crystal Structure Of Aconitase With Trans-Aconitate		2e-05
1ami_A	754	Steric And Conformational Features Of The Aconitase		2e-05
1aco_A	754	Crystal Structure Of Aconitase With Transaconitate		2e-05
1b0m_A	753	Aconitase R644q:fluorocitrate Complex Length = 753		5e-05
1b0j_A	754	Crystal Structure Of Aconitase With Isocitrate Leng		5e-05
1c96_A	753	S642a:citrate Complex Of Aconitase Length = 753		5e-05
1c97_A	753	S642a:isocitrate Complex Of Aconitase Length = 753		5e-05
5acn_A	754	Structure Of Activated Aconitase. Formation Of The		5e-05

>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888

Iteration: 1
 Score =  147 bits (372), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 85/97 (87%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K+Q
Sbjct: 790 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQ 849
Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           V++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 850 VKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKM 886

>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908

Iteration: 1
 Score =  145 bits (366), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 64/97 (65%), Positives = 83/97 (85%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G+KAV+AESYERIHRSNLVGMG+ PL++LPGENADSL LTG+ERYTI IP++  P   +Q
Sbjct: 810 GIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADSLGLTGRERYTIIIPENLTPRMHVQ 869
Query: 65  VEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKM 101
           V++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM
Sbjct: 870 VKLDTGKTFQAVIRFDTDVELTYFHNGGILNYMIRKM 906

>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
           F G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + 
Sbjct: 653 FLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKP 710
Query: 63  LQ--VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
           L   ++  +G + +++L     E  I +++ G  LN M
Sbjct: 711 LTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748

>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
           F G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + 
Sbjct: 653 FLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKP 710
Query: 63  LQ--VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
           L   ++  +G + +++L     E  I +++ G  LN M
Sbjct: 711 LTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748

>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
           F G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + 
Sbjct: 653 FLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKP 710
Query: 63  LQ--VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
           L   ++  +G + +++L     E  I +++ G  LN M
Sbjct: 711 LTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748

>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + L+
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 711
Query: 65  --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
             ++  +G + +++L     E  I +++ G  LN M
Sbjct: 712 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747

>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + L+
Sbjct: 655 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 712
Query: 65  --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
             ++  +G + +++L     E  I +++ G  LN M
Sbjct: 713 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748

>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + L+
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 711
Query: 65  --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
             ++  +G + +++L     E  I +++ G  LN M
Sbjct: 712 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747

>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + L+
Sbjct: 654 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 711
Query: 65  --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
             ++  +G + +++L     E  I +++ G  LN M
Sbjct: 712 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747

>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 5   GVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQ 64
           G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P + L+
Sbjct: 655 GGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPGKPLK 712
Query: 65  --VEVDDGRKFSVILRFD-TEVDILYYKHGGILNYM 97
             ++  +G + +++L     E  I +++ G  LN M
Sbjct: 713 CIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 748

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
2b3y_A	888	Iron-responsive element binding protein 1; IRP1 IR	2e-57
1c96_A	753	Mitochondrial aconitase; lyase, tricarboxylic acid	1e-30
2pkp_A	170	Homoaconitase small subunit; beta barrel, amino-ac	3e-07
1v7l_A	163	3-isopropylmalate dehydratase small subunit; beta	1e-05

>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888

 Score =  188 bits (480), Expect = 2e-57
 Identities = 65/99 (65%), Positives = 85/99 (85%)

Query: 4   QGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKL 63
            G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K+
Sbjct: 789 LGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKV 848

Query: 64  QVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           QV++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM 
Sbjct: 849 QVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 887

>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753

 Score =  112 bits (282), Expect = 1e-30
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
             G +A+I +S+ RIH +NL   G+ PL F    + +  K+   ++ TI+   D  P + 
Sbjct: 652 HLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYN--KIHPVDKLTIQGLKDFAPGKP 709

Query: 63  LQVEV--DDGRKFSVIL-RFDTEVDILYYKHGGILNYM 97
           L+  +   +G + +++L     E  I +++ G  LN M
Sbjct: 710 LKCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM 747

>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii} Length = 170

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 14/102 (13%)

Query: 1   MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPH 60
           + + G+KAVIA+S+ RI   N + +G+ P+       A++ ++   +   I +       
Sbjct: 74  IKYCGIKAVIAKSFARIFYRNAINVGLIPII------ANTDEIKDGDIVEIDLDK----- 122

Query: 61  QKLQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           +++ +  +  +          E +IL    GG++NY+ ++ L
Sbjct: 123 EEIVIT-NKNKTIKCETPKGLEREIL--AAGGLVNYLKKRKL 161

>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1 Length = 163

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1   MLFQGVKAVIAESYERIHRSNLVGMGIAPL 30
           +   G+  VIAES+ RI   N + +GI  L
Sbjct: 74  LKALGIAGVIAESFGRIFYRNAINIGIPLL 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2b3y_A	888	Iron-responsive element binding protein 1; IRP1 IR	99.93
2pkp_A	170	Homoaconitase small subunit; beta barrel, amino-ac	99.91
3vba_A	176	Isopropylmalate/citramalate isomerase small subun;	99.91
1v7l_A	163	3-isopropylmalate dehydratase small subunit; beta	99.9
1c96_A	753	Mitochondrial aconitase; lyase, tricarboxylic acid	99.89
2hcu_A	213	3-isopropylmalate dehydratase small subunit; beta	99.73
1l5j_A	865	Aconitate hydratase 2; molecular recognition, RNA	99.72
3q3w_A	203	3-isopropylmalate dehydratase small subunit; struc	99.71
3h5j_A	171	3-isopropylmalate dehydratase small subunit; leuci	99.67

>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A

Probab=99.93  E-value=2.3e-26  Score=191.71  Aligned_cols=101  Identities=64%  Similarity=1.144  Sum_probs=89.2

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT   81 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~   81 (102)
                      +++||+||||+||||||++||+|+|+|||+|+++++++.+++.+++.++|++.+.+++|+.+++.+++|++|++.++++|
T Consensus       787 ~~~Gi~aVIA~SFarIf~~Nli~~Gllpl~~~~~~~~~~~~~~~~~~i~i~l~~~~~~g~~v~v~~~~G~~~~~~~~~~t  866 (888)
T 2b3y_A          787 FLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDT  866 (888)
T ss_dssp             HHTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCSSCCTTCEEEEEETTSCEEEEEECCCS
T ss_pred             HHcCeeEEEEhhHHHHHHhhhhhcCCceEeecccccHHHhccCCCceEEEEcccccCCCcEEEEEeCCCeEEEEEecCCC
Confidence            67999999999999999999999999999999888888777667788999977668889766544478889999988889


Q ss_pred             HHHHHHHHhCChHHHHHHhhC
Q psy7216          82 EVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        82 ~~e~~ii~aGGll~~~~~~~~  102 (102)
                      ++|++|+++||+|||++++++
T Consensus       867 ~~e~~~~~aGGiL~yv~~~~~  887 (888)
T 2b3y_A          867 DVELTYFLNGGILNYMIRKMA  887 (888)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999874

>2pkp_A Homoaconitase small subunit; beta barrel, amino-acid biosynthesis, leucine biosynthesis, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=4.3e-25  Score=154.97  Aligned_cols=86  Identities=22%  Similarity=0.415  Sum_probs=70.9

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT   81 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~   81 (102)
                      +++|++||||+|||||||+||+|+|+||++|+    ++.+.  +++.++||+.    ++. |+ +.++|+++++. .+ +
T Consensus        75 ~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~l~--~gd~i~idl~----~~~-v~-~~~~g~~~~~~-~~-~  140 (170)
T 2pkp_A           75 KYCGIKAVIAKSFARIFYRNAINVGLIPIIAN----TDEIK--DGDIVEIDLD----KEE-IV-ITNKNKTIKCE-TP-K  140 (170)
T ss_dssp             HTTTCCEEEESCBCHHHHHHHHHHTCEEEECC----GGGCC--TTCEEEEETT----TTE-EE-EGGGTEEEECB-CC-C
T ss_pred             HHhCCcEEEEchHHHHHHhhHHHCCCceEEec----HHHcC--CCcEEEEECC----CCE-EE-ECCCCeEEEEE-eC-C
Confidence            57999999999999999999999999999996    55553  5567999975    453 32 33578888774 35 9


Q ss_pred             HHHHHHHHhCChHHHHHHhh
Q psy7216          82 EVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        82 ~~e~~ii~aGGll~~~~~~~  101 (102)
                      +.+++++++||++||+++++
T Consensus       141 ~~~~~~l~aGGll~~~~~~~  160 (170)
T 2pkp_A          141 GLEREILAAGGLVNYLKKRK  160 (170)
T ss_dssp             HHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999875

>3vba_A Isopropylmalate/citramalate isomerase small subun; lyase, LEUD, cytosol; 2.00A {Methanocaldococcus jannaschii}

Probab=99.91  E-value=8.1e-25  Score=154.24  Aligned_cols=88  Identities=20%  Similarity=0.416  Sum_probs=72.1

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT   81 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~   81 (102)
                      +++|++||||+|||||||+||+|+|+||++++  ++++.++. | +.++||+.+    + +| .+.++|+++++. ++ |
T Consensus        77 ~~~Gi~aVIA~SFA~If~~N~in~Gl~~i~~~--~~~~~~~~-g-d~i~idl~~----~-~v-~~~~~g~~~~~~-~l-~  144 (176)
T 3vba_A           77 KGAGISCVIAESFARIFYRNAINVGLPLIECK--GISEKVNE-G-DELEVNLET----G-EI-KNLTTGEVLKGQ-KL-P  144 (176)
T ss_dssp             HHTTCCEEEESCBCHHHHHHHHHTTCCEEECT--THHHHCCT-T-CEEEEETTT----C-EE-EETTTCCEEECC-CC-C
T ss_pred             HHhCCcEEEeccHHHHHHhhHHHcCCCeEEcc--hHHHhcCC-C-CEEEEECCC----C-EE-EeCCCCeEEEEe-cC-C
Confidence            67899999999999999999999999999886  35666654 4 568999753    4 23 334678888887 56 9


Q ss_pred             HHHHHHHHhCChHHHHHHhh
Q psy7216          82 EVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        82 ~~e~~ii~aGGll~~~~~~~  101 (102)
                      ++++++++|||++||++++.
T Consensus       145 ~~~~~ii~aGGli~~~k~~~  164 (176)
T 3vba_A          145 EFMMEILEAGGLMPYLKKKM  164 (176)
T ss_dssp             HHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHhc
Confidence            99999999999999999864

>1v7l_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 1.98A {Pyrococcus horikoshii} SCOP: c.8.2.1

Probab=99.90  E-value=2e-24  Score=150.70  Aligned_cols=83  Identities=27%  Similarity=0.399  Sum_probs=68.1

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeE-EEEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRK-FSVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~-~~~~~~~~   80 (102)
                      +++|++||||+|||||||+||+|+|+||++|+    ++.+.  +++.++||+.    +|. |  .  +|++ +++. .+ 
T Consensus        75 ~~~Gi~aVIA~SFarIf~~N~in~Gllpl~~~----~~~l~--~gd~i~idl~----~~~-v--~--~g~~~~~~~-~~-  137 (163)
T 1v7l_A           75 KALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEGLK--DGDLVTVNWE----TGE-V--R--KGDEILMFE-PL-  137 (163)
T ss_dssp             HHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTTCC--TTCEEEEETT----TTE-E--E--ETTEEEECE-EC-
T ss_pred             HHhCCCEEEEchHHHHHHhhHHHCCCceEEec----HHHcC--CCcEEEEEcc----CCE-E--E--CCcEEEEEE-cC-
Confidence            57899999999999999999999999999996    44443  5567999974    453 3  2  5666 7663 35 


Q ss_pred             CHHHHHHHHhCChHHHHHHhh
Q psy7216          81 TEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~  101 (102)
                      ++.+++++++||++||+++++
T Consensus       138 ~~~~~~~l~aGGll~~~~~~~  158 (163)
T 1v7l_A          138 EDFLLEIVREGGILEYIRRRG  158 (163)
T ss_dssp             CHHHHHHHHTTSHHHHHHHSC
T ss_pred             CHHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999875

>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A

Probab=99.89  E-value=1.4e-23  Score=172.94  Aligned_cols=97  Identities=27%  Similarity=0.431  Sum_probs=77.9

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEE--ecCCeE--EEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVE--VDDGRK--FSVIL   77 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~--~~~g~~--~~~~~   77 (102)
                      +++||+||||+|||||||+||+|+|+|||+|+++++++.++  ++|.++|+....+.+|..+++.  .++|++  +++.+
T Consensus       651 ~~~Gi~avIa~sfarI~~~N~i~~Gllpl~~~~~~~~~~l~--~gd~i~I~gl~~l~~g~~v~~~i~~~~g~~~~~~~~~  728 (753)
T 1c96_A          651 RHLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKIH--PVDKLTIQGLKDFAPGKPLKCIIKHPNGTQETILLNH  728 (753)
T ss_dssp             HHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGGCC--TTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEEC
T ss_pred             HHcCeeEEEehhHHHHHHhhhhhcCCcceeecCcchhhhcC--CCCEEEEcChHHcCCCceEEEEEEecCCcEEEEEEeC
Confidence            68999999999999999999999999999998777788664  5677999822236678755443  346765  45555


Q ss_pred             cCCCHHHHHHHHhCChHHHHHHhh
Q psy7216          78 RFDTEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        78 ~~~~~~e~~ii~aGGll~~~~~~~  101 (102)
                      ++ |++|++|+++||+|||++++.
T Consensus       729 ~~-t~~e~~~~~aGGlLnyvk~~~  751 (753)
T 1c96_A          729 TF-NETQIEWFRAGSALNRMKELQ  751 (753)
T ss_dssp             CC-CHHHHHHHHHTSHHHHHHHHS
T ss_pred             CC-CHHHHHHHHcCCHHHHHHHhh
Confidence            65 999999999999999999863

>2hcu_A 3-isopropylmalate dehydratase small subunit; beta barrel, lyase; 2.10A {Streptococcus mutans}

Probab=99.73  E-value=1.8e-18  Score=124.92  Aligned_cols=78  Identities=24%  Similarity=0.263  Sum_probs=60.4

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhc-cCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLK-LTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~-~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      +.+||+||||+|||||||+||+|+|+||++++++ +++.+. .+.++.++||+.+    + +|+  .++| ++++.  + 
T Consensus       109 ~~~Gi~aVIA~SFArIF~~N~in~GlLpl~~~~~-~~~~l~~~~~G~~i~VDl~~----~-~I~--~~~g-~~~f~--i-  176 (213)
T 2hcu_A          109 ADYGFKVIVAGSFGDIHYNNDLNNGILPIIQPKE-VRDKLAKLKPTDEVTVNLFE----Q-KIY--SPVG-DFSFD--I-  176 (213)
T ss_dssp             HHHTCCEEEESCBCHHHHHHHHTTTCEEEECCHH-HHHHHHTSCTTCEEEEETTT----T-EEE--ETTE-EEECC--C-
T ss_pred             HHhCCcEEEEchHHHHHHHHHHHcCCCcEEeCHH-HHHHHhccCCCCEEEEECCC----C-EEE--ECCc-eEEEe--C-
Confidence            5789999999999999999999999999999742 466661 1345669999863    3 343  2556 66654  6 


Q ss_pred             CHHHHHHHHhC
Q psy7216          81 TEVDILYYKHG   91 (102)
Q Consensus        81 ~~~e~~ii~aG   91 (102)
                      +++.++++.+|
T Consensus       177 ~~~~k~~l~~G  187 (213)
T 2hcu_A          177 DGEWKHKLLNG  187 (213)
T ss_dssp             CHHHHHHHHTT
T ss_pred             CHHHHHHHHcC
Confidence            99999999998

>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1

Probab=99.72  E-value=3.7e-18  Score=142.15  Aligned_cols=86  Identities=16%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeE-EEEEecCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRK-FSVILRFD   80 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~-~~~~~~~~   80 (102)
                      +.+| ++|||+|||||||+||+|+|+||++++    .+.+.  .++.++||+.+    |. | .+.++|++ +++.+  .
T Consensus       267 k~~G-~~VIA~SFA~IF~~N~~n~Gllpi~~~----v~~l~--~Gd~i~Idl~~----g~-I-~~~~~g~~~~~f~~--~  331 (865)
T 1l5j_A          267 KRGG-GLCLGGKIAPIFFNTMEDAGALPIEVD----VSNLN--MGDVIDVYPYK----GE-V-RNHETGELLATFEL--K  331 (865)
T ss_dssp             EEEC-CEEEEEEECHHHHHHHHHTTCEEEECC----CTTCC--TTCEEEEETTT----TE-E-EETTTCCEEEECCC--S
T ss_pred             hhcC-CeEEechHHHHHHHHHHHcCCceEEec----HhhcC--CCCEEEEECCC----CE-E-EEcCCCeEEEEEEe--C
Confidence            5679 999999999999999999999999985    44554  34569999863    42 3 23356766 77653  4


Q ss_pred             CHHHHHHHHhCChHHHHHHhhC
Q psy7216          81 TEVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~~~  102 (102)
                      +++.+++++|||+++|+++|.|
T Consensus       332 p~~~~~~v~AGGli~~i~~r~l  353 (865)
T 1l5j_A          332 TDVLIDEVRAGGRIPLIIGRGL  353 (865)
T ss_dssp             CTHHHHHHHHTSHHHHHHHHHH
T ss_pred             CHHHHHHHHcCChhhhhhcchH
Confidence            9999999999999999998753

>3q3w_A 3-isopropylmalate dehydratase small subunit; structural genomics, center for structural genomics of infec diseases, csgid, isomerase; HET: MSE; 1.89A {Campylobacter jejuni}

Probab=99.71  E-value=2.6e-18  Score=123.29  Aligned_cols=79  Identities=16%  Similarity=0.331  Sum_probs=61.1

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhc----cCCCeEEEEecCCCCCCCceEEEEecCCeEEEEE
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLK----LTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVI   76 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~----~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~   76 (102)
                      ++.+||+||||+|||||||+||+|+|+||+++++. ..+.+.    .+.++.++||+++    + +|+   ++|+++++.
T Consensus        95 l~~~Gi~aVIA~SFa~IF~~N~~n~Gll~i~~~~~-~~~~l~~~~~~~~g~~i~VDL~~----~-~i~---~~g~~~~f~  165 (203)
T 3q3w_A           95 LVDYGIRAIIAPSFADIFKNNALGNGLLTIELAKD-EVLEIVDELKKSQDKNIEISLLE----K-RVF---FKDKIFSFD  165 (203)
T ss_dssp             HHHHTCCEEEESCBCHHHHHHHHHTTCEEEECCHH-HHHHHHHHHHHCSCCEEEEETTT----T-EEE---ETTEEEECC
T ss_pred             HHHcCceEEEECcHHHHHHHHHHhCCCCeEEeCHH-HHHHHHHHhhcCCCCEEEEECCC----C-EEE---ECCEEEEEE
Confidence            35789999999999999999999999999999752 344441    1345669999863    3 342   367777765


Q ss_pred             ecCCCHHHHHHHHhC
Q psy7216          77 LRFDTEVDILYYKHG   91 (102)
Q Consensus        77 ~~~~~~~e~~ii~aG   91 (102)
                        + +++.++.+.+|
T Consensus       166 --i-~~~~r~~Ll~G  177 (203)
T 3q3w_A          166 --L-DDFHRICLLEG  177 (203)
T ss_dssp             --C-CHHHHHHHHHT
T ss_pred             --e-CHHHHHHHHcC
Confidence              5 89999999987

>3h5j_A 3-isopropylmalate dehydratase small subunit; leucine biosynthesis, isopropylmalate isomerase, LEUD, amino-acid biosynthesis; 1.20A {Mycobacterium tuberculosis} PDB: 3h5h_A 3h5e_A

Probab=99.67  E-value=2.2e-17  Score=115.72  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=59.6

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhh----ccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSL----KLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVIL   77 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~----~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~   77 (102)
                      +.+|++||||+||||||++|++|+|+||+++++. ..+.+    ..+.++.++||+++    + +|+   .+|+++++. 
T Consensus        88 ~~~Gi~~VIA~Sfa~If~~N~~n~Gllpi~~~~~-~~~~l~~~~~~~~g~~i~VDl~~----~-~i~---~~g~~~~F~-  157 (171)
T 3h5j_A           88 MDYGFRVVISSRFGDIFRGNAGKAGLLAAEVAQD-DVELLWKLIEQSPGLEITANLQD----R-IIT---AATVVLPFK-  157 (171)
T ss_dssp             HHHTCCEEEESSBCHHHHHHHHHHTCEEEECCHH-HHHHHHHHHHHSTTCEEEEETTT----T-EEE---ETTEEEECB-
T ss_pred             HHhCCcEEEECcHHHHHHhHHHHcCCceEEeCHH-HHHHHHHHhhcCCCcEEEEECCC----C-EEE---ECCEEEEEE-
Confidence            5789999999999999999999999999999742 35554    11345669999863    3 332   367777664 


Q ss_pred             cCCCHHHHHHHHhC
Q psy7216          78 RFDTEVDILYYKHG   91 (102)
Q Consensus        78 ~~~~~~e~~ii~aG   91 (102)
                       + +++.++.+.+|
T Consensus       158 -i-~~~~k~~ll~G  169 (171)
T 3h5j_A          158 -I-DDHSAWRLLEG  169 (171)
T ss_dssp             -C-CHHHHHHHHHT
T ss_pred             -E-CHHHHHHHHhC
Confidence             5 89999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d2b3ya1	259	c.8.2.1 (A:631-889) ron-responsive element binding	2e-31
d1acoa1	226	c.8.2.1 (A:529-754) Aconitase A, C-terminal domain	4e-19
d1v7la_	162	c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyroc	7e-10

>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: ron-responsive element binding protein 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 2e-31
 Identities = 65/100 (65%), Positives = 85/100 (85%)

Query: 3   FQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQK 62
             G+KAV+AESYERIHRSNLVGMG+ PL++LPGENAD+L LTG+ERYTI IP++ KP  K
Sbjct: 159 LLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMK 218

Query: 63  LQVEVDDGRKFSVILRFDTEVDILYYKHGGILNYMIRKML 102
           +QV++D G+ F  ++RFDT+V++ Y+ +GGILNYMIRKM 
Sbjct: 219 VQVKLDTGKTFQAVMRFDTDVELTYFLNGGILNYMIRKMA 258

>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 226

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Aconitase A, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.3 bits (187), Expect = 4e-19
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 6/104 (5%)

Query: 1   MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPH 60
             F G +A+I +S+ RIH +NL   G+ PL F   + AD  K+   ++ TI+   D  P 
Sbjct: 123 PRFLGGRAIITKSFARIHETNLKKQGLLPLTF--ADPADYNKIHPVDKLTIQGLKDFAPG 180

Query: 61  QKLQVEV--DDGRKFSVIL-RFDTEVDILYYKHGGILNYMIRKM 101
           + L   +   +G + +++L     E  I +++ G  LN M +++
Sbjct: 181 KPLTCIIKHPNGTQETILLNHTFNETQIEWFRAGSALNRM-KEL 223

>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]} Length = 162

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Isopropylmalate isomerase LeuD
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.7 bits (121), Expect = 7e-10
 Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 24/104 (23%)

Query: 1   MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPH 60
           +   G+  VIAES+ RI   N + +GI PL     E                     K  
Sbjct: 74  LKALGIAGVIAESFGRIFYRNAINIGI-PLLLGKTE-------------------GLKDG 113

Query: 61  QKLQVEVDDG--RKFSVILRFDT--EVDILYYKHGGILNYMIRK 100
             + V  + G  RK   IL F+   +  +   + GGIL Y+ R+
Sbjct: 114 DLVTVNWETGEVRKGDEILMFEPLEDFLLEIVREGGILEYIRRR 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d2b3ya1	259	ron-responsive element binding protein 1, C-termin	99.97
d1acoa1	226	Aconitase A, C-terminal domain {Cow (Bos taurus) [	99.96
d1v7la_	162	Isopropylmalate isomerase LeuD {Pyrococcus horikos	99.88
d1l5ja2	212	Aconitase B, second N-terminal domain {Escherichia	92.3

>d2b3ya1 c.8.2.1 (A:631-889) ron-responsive element binding protein 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: ron-responsive element binding protein 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-33  Score=203.09  Aligned_cols=101  Identities=64%  Similarity=1.144  Sum_probs=92.8

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCC
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDT   81 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~   81 (102)
                      ++|||+||||+||||||++||+|||||||+|.++++++.+.+.+++.+++.+.+.++++..++++.++|+++.+.++++|
T Consensus       158 ~~LGv~aVIAkSFaRIHrsNLi~~GvLPL~F~~~~d~d~l~l~g~e~~~i~~~~~l~~~~~v~v~~~~g~~~~~~~ridT  237 (259)
T d2b3ya1         158 FLLGIKAVLAESYERIHRSNLVGMGVIPLEYLPGENADALGLTGQERYTIIIPENLKPQMKVQVKLDTGKTFQAVMRFDT  237 (259)
T ss_dssp             HHTTEEEEEESCBCHHHHHHHHHHTCEEEEECTTCCHHHHTCCSCSCEEECCCSSCCTTCEEEEEETTSCEEEEEECCCS
T ss_pred             HHhCceEEEEccHHHHHHhhhcccceeEEEecCCccccccccccceeeeccccccCCCCeEEEEEeCCCCEEEEEEeCCC
Confidence            68999999999999999999999999999999999999998878888888877778888877777778899999999999


Q ss_pred             HHHHHHHHhCChHHHHHHhhC
Q psy7216          82 EVDILYYKHGGILNYMIRKML  102 (102)
Q Consensus        82 ~~e~~ii~aGGll~~~~~~~~  102 (102)
                      +.|++|+++||+|||++++++
T Consensus       238 ~~Eie~~~aGGiLnyVlrkla  258 (259)
T d2b3ya1         238 DVELTYFLNGGILNYMIRKMA  258 (259)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHhc
Confidence            999999999999999999874

>d1acoa1 c.8.2.1 (A:529-754) Aconitase A, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Aconitase A, C-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=3.1e-29  Score=181.02  Aligned_cols=97  Identities=27%  Similarity=0.427  Sum_probs=78.9

Q ss_pred             cccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEe--cCCeE--EEEEe
Q psy7216           2 LFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEV--DDGRK--FSVIL   77 (102)
Q Consensus         2 ~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~--~~g~~--~~~~~   77 (102)
                      ++|||+||||+|||||||+||+|||+|||+|+++.+++.+  ++++.++++..+.+.|++++++.+  .+|++  +.+. 
T Consensus       124 ~~lGv~aViA~Sf~rIhrsNli~~Gvlpl~f~~~~~~~~l--~~~d~~~I~~l~~i~p~~~v~v~I~~~dG~~~~i~l~-  200 (226)
T d1acoa1         124 RFLGGRAIITKSFARIHETNLKKQGLLPLTFADPADYNKI--HPVDKLTIQGLKDFAPGKPLTCIIKHPNGTQETILLN-  200 (226)
T ss_dssp             HHTTEEEEEESCBCHHHHHHHHHTTCEEEEESSGGGGGGC--CTTCEEEEECGGGCCTTCCEEEEEECTTSCEEEEEEE-
T ss_pred             HhcccceeehHHHHHHHHhhHHhcCceeeeeccccchhhc--ccccccccccccccCCCCEEEEEEEeCCCCEEEEEEe-
Confidence            6899999999999999999999999999999987666654  467788888555678888776654  46754  4444 


Q ss_pred             cCCCHHHHHHHHhCChHHHHHHhh
Q psy7216          78 RFDTEVDILYYKHGGILNYMIRKM  101 (102)
Q Consensus        78 ~~~~~~e~~ii~aGGll~~~~~~~  101 (102)
                      ..+|+.|++|+++||+|||+|++.
T Consensus       201 ~~~T~~Eiey~kaGGiLnyvr~~~  224 (226)
T d1acoa1         201 HTFNETQIEWFRAGSALNRMKELQ  224 (226)
T ss_dssp             CCCCHHHHHHHHHTSHHHHHHHHT
T ss_pred             ccCCHHHHHHHHhCCHHHHHHHHh
Confidence            345999999999999999998763

>d1v7la_ c.8.2.1 (A:) Isopropylmalate isomerase LeuD {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Isopropylmalate isomerase LeuD
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2.8e-23  Score=142.92  Aligned_cols=84  Identities=25%  Similarity=0.380  Sum_probs=65.3

Q ss_pred             CcccCeeEEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCC
Q psy7216           1 MLFQGVKAVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFD   80 (102)
Q Consensus         1 ~~~lGv~aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~   80 (102)
                      ++++|++||||+|||||||+||+|+|+|+++++    .+.++  .++.++||+.+    + +++   ..++++.+.+ + 
T Consensus        74 l~~~Gi~aVIA~SFarIf~rN~in~Glp~i~~~----~~~i~--~gd~i~VDl~~----~-~i~---~~~~~~~~~~-l-  137 (162)
T d1v7la_          74 LKALGIAGVIAESFGRIFYRNAINIGIPLLLGK----TEGLK--DGDLVTVNWET----G-EVR---KGDEILMFEP-L-  137 (162)
T ss_dssp             HHHHTCCEEEESCBCHHHHHHHHHHTCCEEESC----CTTCC--TTCEEEEETTT----T-EEE---ETTEEEECEE-C-
T ss_pred             HHhccEeeEeehhhhHHHHhhHHHCCCCeEecc----hhhCC--CCCEEEEECCC----C-EEE---eCCEEEEecc-C-
Confidence            467899999999999999999999998666654    23443  34569999863    4 232   3456777664 5 


Q ss_pred             CHHHHHHHHhCChHHHHHHh
Q psy7216          81 TEVDILYYKHGGILNYMIRK  100 (102)
Q Consensus        81 ~~~e~~ii~aGGll~~~~~~  100 (102)
                      ++.+++++++||+++|+++|
T Consensus       138 ~~~~~~il~aGGl~~y~~~~  157 (162)
T d1v7la_         138 EDFLLEIVREGGILEYIRRR  157 (162)
T ss_dssp             CHHHHHHHHTTSHHHHHHHS
T ss_pred             CHHHHHHHHCCCHHHHHHhh
Confidence            89999999999999999986

>d1l5ja2 c.8.2.1 (A:161-372) Aconitase B, second N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: LeuD/IlvD-like
family: LeuD-like
domain: Aconitase B, second N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.21  Score=33.97  Aligned_cols=80  Identities=15%  Similarity=0.235  Sum_probs=53.3

Q ss_pred             EEEecchhhhhhhccccCccceEEeCCCCChhhhccCCCeEEEEecCCCCCCCceEEEEecCCeEEEEEecCCCHHHHHH
Q psy7216           8 AVIAESYERIHRSNLVGMGIAPLQFLPGENADSLKLTGKERYTIRIPDDAKPHQKLQVEVDDGRKFSVILRFDTEVDILY   87 (102)
Q Consensus         8 aVIA~SFarI~~~N~in~Gilpl~~~~~~~~~~~~~~gd~~~~idl~~~~~~g~~v~~~~~~g~~~~~~~~~~~~~e~~i   87 (102)
                      .|+...-|.||+.-+---|=+|++++.    ..++. || .++++--    .|+  ..+..+|+... ...+-|+...+-
T Consensus       112 iv~G~~IaPIF~nT~edsGalpIe~dv----~~l~~-Gd-vi~i~p~----~g~--i~~~~~gevi~-~f~l~t~~l~De  178 (212)
T d1l5ja2         112 LCLGGKIAPIFFNTMEDAGALPIEVDV----SNLNM-GD-VIDVYPY----KGE--VRNHETGELLA-TFELKTDVLIDE  178 (212)
T ss_dssp             EEEEEEECHHHHHHHHHTTCEEEECCC----TTCCT-TC-EEEEETT----TTE--EEETTTCCEEE-ECCCSCTHHHHH
T ss_pred             eEEcceecceeeeeeeccCceeEEeec----ccccc-CC-ccccccc----cce--EEecCCCcEEE-EeecCCcchhhh
Confidence            355555789999999999999999863    34443 54 5777743    243  23334565442 123338888999


Q ss_pred             HHhCChHHHHHHh
Q psy7216          88 YKHGGILNYMIRK  100 (102)
Q Consensus        88 i~aGGll~~~~~~  100 (102)
                      ++|||-++.+.-|
T Consensus       179 vRAGGri~LIiGr  191 (212)
T d1l5ja2         179 VRAGGRIPLIIGR  191 (212)
T ss_dssp             HHHTSHHHHHHHH
T ss_pred             eecCCCeEEEEch
Confidence            9999999987654