Psyllid ID: psy7271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYDGRMSYGHY
Secondary Structure (PSIPRED)
cHHHHHHccccccccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEEEEccccccccccccccccEEEccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccEEEEEEEcccccccEEcccccccccccccEEEEEEEEEEEcccccccccccccccEEEEEEcccccccccccccccccccccccccccEEEEEEEEEEEEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccHHHHHHccccccccccccccEEEEEEEEEHHHccccccEEEEEEEEEccccEEEEEEEEEEEcccccccccccccccEEEEEEcccccccccccEEEccccccccHccccccccccccccccccccccHHHccHHcccccEEEEEEEEEEEccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHccHHHHHHcHHHcHHHHHHHHHHHHcEEcccEEEEHHccHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmremyhneaemsptspdyniesltggdpfydrfpwfrLVGRAFVYLsnlmypiplIQKVAIVNEKGDVKGHLKIAVQIVtdeestdltgtvkqsariifdddqqtgrnnkkavedsghqgdkvedsecdgdsgrgdssicsdvkeeeppphlspgtelQFRITVLQAVGISTEYSDIFCQfnflhrhdeafstepvkntgkgtplgfyhiqnltsataahaaplhphqstsqiyQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFtreyrgvfdlplytnkcpkydgrmsyghy
Flexible Loop (DISEMBL)
MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQivtdeestdltgtvkqsariifdddqqtgrnnkkavedsghqgdkvedsecdgdsgrGDSSICSDVKEEEPpphlspgtelQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTReyrgvfdlplytnkcpkydgrmsyghy
Low Complexity Region (SEG)
MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNltsataahaaplhpHQSTSQIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYDGRMSYGHY
Disordered region (IsUnstruct)
**********************SLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEE*TDLTGTV****RII***********************************************************LQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYD********
Disordered Region (DISOPRED)
MMREMYHNEAEMSP*******ESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVT************************************************************************SPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLA*********************VMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYDG*M*****
Disordered Region (DISEMBL)
**************TSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQT************************************************PGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAH***********QIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYDGRMSYGHY
Disordered Region (DISPRO)
M*REMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRN********************************SDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYDGRMSY***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPLALYITSVCQPLMVNMSRLWWSTVMNSRVEAYSCFTREYRGVFDLPLYTNKCPKYDGRMSYGHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
UNIPROTKB|Q7PHR1	1644	unc-104 "Kinesin-like protein	0.695	0.128	0.644	1.4e-76
UNIPROTKB|Q17BU3	1644	unc-104 "Kinesin-like protein	0.698	0.129	0.650	6e-76
UNIPROTKB|Q28WQ1	1671	unc-104 "Kinesin-like protein	0.695	0.126	0.659	3.2e-74
FB|FBgn0034155	1670	unc-104 "unc-104 ortholog" [Dr	0.695	0.126	0.654	1.4e-73
UNIPROTKB|Q12756	1690	KIF1A "Kinesin-like protein KI	0.442	0.079	0.496	5e-53
UNIPROTKB|F1NXK6	1657	KIF1A "Uncharacterized protein	0.331	0.060	0.613	2e-52
UNIPROTKB|J9NUM7	1347	KIF1B "Uncharacterized protein	0.436	0.098	0.481	4.5e-51
ZFIN|ZDB-GENE-030820-1	1782	kif1b "kinesin family member 1	0.331	0.056	0.504	1.7e-46
UNIPROTKB|E2R9C4	1815	KIF1B "Uncharacterized protein	0.252	0.042	0.636	4.6e-46
UNIPROTKB|E1C889	1770	KIF1B "Uncharacterized protein	0.219	0.037	0.731	5.5e-46

UNIPROTKB|Q7PHR1 unc-104 "Kinesin-like protein unc-104" [Anopheles gambiae (taxid:7165)]

 Score = 783 (280.7 bits), Expect = 1.4e-76, P = 1.4e-76
 Identities = 147/228 (64%), Positives = 182/228 (79%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKV 60
             +MREMYHNEAE+SPTSPDYN+ESLTGGDPFYDRFPWFR+VGR+FVYLSNL+YP+PL+ KV
Sbjct:   815 LMREMYHNEAELSPTSPDYNVESLTGGDPFYDRFPWFRMVGRSFVYLSNLLYPVPLVHKV 874

Query:    61 AIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRN----------- 109
             AIVNE+GDV+G+L++AVQ V DEE+ D +  VKQSARI+FD++Q  G++           
Sbjct:   875 AIVNERGDVRGYLRVAVQPVMDEENADFSNGVKQSARILFDEEQN-GQHKVPKIRTIPDK 933

Query:   110 NKKAVEDSGHQGDKVEDSEC-DGDSGRGDSSICSDVKE---EEPPPHLSPGTELQFRITV 165
             ++K +E     G K+E+ E  D DSGRGDSS+ S++ E   +EP  HL PG E  FR+TV
Sbjct:   934 DEKYIEGGNEMGTKLEELEQEDADSGRGDSSVASELHESNDQEPGEHLQPGKEFTFRVTV 993

Query:   166 LQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQN 213
             LQA GI+ EY+DIFCQFNFLHRH+EAFSTEPVKN+G G PLGFYH+QN
Sbjct:   994 LQATGIAAEYADIFCQFNFLHRHEEAFSTEPVKNSGSGAPLGFYHVQN 1041

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

GO:0048489 "synaptic vesicle transport" evidence=ISS

UNIPROTKB|Q17BU3 unc-104 "Kinesin-like protein unc-104" [Aedes aegypti (taxid:7159)]

 Score = 777 (278.6 bits), Expect = 6.0e-76, P = 6.0e-76
 Identities = 147/226 (65%), Positives = 177/226 (78%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKV 60
             +MREMYHNEAE+SPTSPDYN+ESLTGGDPFYDRFPWFR+VGR+FVYLSNL+YP+PL+ KV
Sbjct:   817 LMREMYHNEAELSPTSPDYNVESLTGGDPFYDRFPWFRMVGRSFVYLSNLLYPVPLVHKV 876

Query:    61 AIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGRNNKK--AVEDSG 118
             AIVNE+GDV+G+L++AVQ V DEE+ D    VKQSARI+FD++Q  G    K   + D  
Sbjct:   877 AIVNERGDVRGYLRVAVQPVMDEENADFNNGVKQSARIVFDEEQNGGHKIPKIRTIHDKD 936

Query:   119 H---QGD----KVEDSEC-DGDSGRGDSSICSDV---KEEEPPPHLSPGTELQFRITVLQ 167
                 +G     K+E+ E  D DSGRGDSS+ S++    E EP  HL PG E  FR+TVLQ
Sbjct:   937 EKYIEGSNDIMKLEELEQEDADSGRGDSSVASELHESNEHEPGEHLQPGKEFTFRVTVLQ 996

Query:   168 AVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQN 213
             A GI+ EY+DIFCQFNFLHRH+EAFSTEPVKN+G G PLGFYH+QN
Sbjct:   997 ATGIAAEYADIFCQFNFLHRHEEAFSTEPVKNSGSGAPLGFYHVQN 1042

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

GO:0048489 "synaptic vesicle transport" evidence=ISS

UNIPROTKB|Q28WQ1 unc-104 "Kinesin-like protein unc-104" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 761 (272.9 bits), Expect = 3.2e-74, P = 3.2e-74
 Identities = 147/223 (65%), Positives = 174/223 (78%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKV 60
             +MREMYHNEAEMSPTSPDYN+ESLTGGDPFYDRFPWFR+VGR+F+YLSNL+YP+PL+ KV
Sbjct:   814 LMREMYHNEAEMSPTSPDYNVESLTGGDPFYDRFPWFRMVGRSFIYLSNLLYPVPLVHKV 873

Query:    61 AIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGR----NNKKAVE- 115
             AIVNE+GDV+G+L+IAVQ V DEES D    VKQSAR++F++D    +    N K  V+ 
Sbjct:   874 AIVNERGDVRGYLRIAVQPVLDEESIDFNNGVKQSARLVFNEDDAKPKYRALNEKDDVQR 933

Query:   116 --DSGHQGDKVEDSECDGDSGRG-DSSICSDVKE--EEPPPHLSPGTELQFRITVLQAVG 170
               D+G    K+E+ E D DSGRG DS+  SD  E  EEP  HL  G E  FR+TVLQA G
Sbjct:   934 YIDNGGHDSKLEELE-DVDSGRGIDSNSASDCPENAEEPGEHLQVGKEFTFRVTVLQATG 992

Query:   171 ISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQN 213
             I  EY+DIFCQFNFLHRH+EAFSTEPVKN+  G PLGFYH+QN
Sbjct:   993 IGAEYADIFCQFNFLHRHEEAFSTEPVKNSASGAPLGFYHVQN 1035

GO:0003674 "molecular_function" evidence=ND

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0047496 "vesicle transport along microtubule" evidence=ISS

GO:0048489 "synaptic vesicle transport" evidence=ISS

FB|FBgn0034155 unc-104 "unc-104 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 755 (270.8 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 146/223 (65%), Positives = 174/223 (78%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKV 60
             +MREMYHNEAEMSPTSPDYN+ESLTGGDPFYDRFPWFR+VGR+F+YLSNL+YP+PL+ KV
Sbjct:   814 LMREMYHNEAEMSPTSPDYNVESLTGGDPFYDRFPWFRMVGRSFIYLSNLLYPVPLVHKV 873

Query:    61 AIVNEKGDVKGHLKIAVQIVTDEESTDLTGTVKQSARIIFDDDQQTGR----NNKKAVE- 115
             AIVNE+GDV+G+L+IAVQ V DEES D    VKQSAR++F++D    +    N K  V+ 
Sbjct:   874 AIVNERGDVRGYLRIAVQPVLDEESIDFNNGVKQSARLVFNEDDAKPKYRALNEKDDVQR 933

Query:   116 --DSGHQGDKVEDSECDGDSGRG-DSSICSDVKE--EEPPPHLSPGTELQFRITVLQAVG 170
               D+G    K+E+ E D DSGRG DS+  S+  E  EEP  HL  G E  FR+TVLQA G
Sbjct:   934 YIDNGGLDSKLEELE-DVDSGRGIDSNSASECHENSEEPGEHLQVGKEFTFRVTVLQATG 992

Query:   171 ISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQN 213
             I  EY+DIFCQFNFLHRH+EAFSTEPVKN+  G PLGFYH+QN
Sbjct:   993 IGAEYADIFCQFNFLHRHEEAFSTEPVKNSASGAPLGFYHVQN 1035

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005871 "kinesin complex" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IMP

GO:0048489 "synaptic vesicle transport" evidence=IMP

GO:0016188 "synaptic vesicle maturation" evidence=IMP

GO:0047496 "vesicle transport along microtubule" evidence=IMP

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008345 "larval locomotory behavior" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

UNIPROTKB|Q12756 KIF1A "Kinesin-like protein KIF1A" [Homo sapiens (taxid:9606)]

 Score = 323 (118.8 bits), Expect = 5.0e-53, Sum P(2) = 5.0e-53
 Identities = 70/141 (49%), Positives = 95/141 (67%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESL-TGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQK 59
             +MREMY   AE+ P+S   + +++ TGGDPFYDRFPWFRLVGRAFVYLSNL+YP+PL+ +
Sbjct:   811 LMREMYDRAAEV-PSSVIEDCDNVVTGGDPFYDRFPWFRLVGRAFVYLSNLLYPVPLVHR 869

Query:    60 VAIVNEKGDVKGHLKIAVQIVT-DEESTDLTGTVKQS--ARIIFDDDQ-QTGRNNKKAVE 115
             VAIV+EKG+VKG L++AVQ ++ DEE+ D    V+QS  A+I FDD   +  ++    V 
Sbjct:   870 VAIVSEKGEVKGFLRVAVQAISADEEAPDYGSGVRQSGTAKISFDDQHFEKFQSESCPVV 929

Query:   116 DSGHQGDKVEDSECDGDSGRG 136
                  G   E+       G+G
Sbjct:   930 GMSRSGTSQEELRIVEGQGQG 950

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0003774 "motor activity" evidence=TAS

GO:0008089 "anterograde axon cargo transport" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1NXK6 KIF1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 322 (118.4 bits), Expect = 2.0e-52, Sum P(2) = 2.0e-52
 Identities = 65/106 (61%), Positives = 85/106 (80%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESL-TGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQK 59
             +MREMY   AE+ P+S   + +++ TGGDPFYDRFPWFRLVGRAFVYLSNL+YP+PL+ +
Sbjct:   775 LMREMYDRAAEV-PSSVIEDCDNVVTGGDPFYDRFPWFRLVGRAFVYLSNLLYPVPLVHR 833

Query:    60 VAIVNEKGDVKGHLKIAVQIVT-DEESTDLTGTVKQS--ARIIFDD 102
             VAIV+EKG+VKG L++AVQ ++ DEE+ D    V+QS  A+I FDD
Sbjct:   834 VAIVSEKGEVKGFLRVAVQAISADEEAPDYGSGVRQSGTAKISFDD 879

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|J9NUM7 KIF1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
 Identities = 66/137 (48%), Positives = 92/137 (67%)

Query:     1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKV 60
             +MREMY    EM+  + D    ++TG DPFYDRF WF+LVGRAFVYLSNL+YP+PLI +V
Sbjct:   465 LMREMYDRAGEMASGAQDDGEATVTGSDPFYDRFHWFKLVGRAFVYLSNLLYPVPLIHRV 524

Query:    61 AIVNEKGDVKGHLKIAVQ-IVTDEESTDLTGTVKQS--ARIIFDDDQQTGRN-NKKAVED 116
             AIV+EKG+V+G L++AVQ I  DEE+ D    ++QS  A+I FD++     + +  A+  
Sbjct:   525 AIVSEKGEVRGFLRVAVQAIAADEEAPDYGSGIRQSGTAKISFDNEYFNQNDFSSVAMTR 584

Query:   117 SGHQGDKVEDSECDGDS 133
             SG   +++   E  G S
Sbjct:   585 SGLSLEELRIVEGQGQS 601

GO:0005543 "phospholipid binding" evidence=IEA

ZFIN|ZDB-GENE-030820-1 kif1b "kinesin family member 1B" [Danio rerio (taxid:7955)]

 Score = 269 (99.8 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
 Identities = 54/107 (50%), Positives = 69/107 (64%)

Query:   107 GRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQFRITVL 166
             G+     V     + +++ + E D   G  D+ +   + E     HL  G+   FR+TVL
Sbjct:  1035 GQGQSSEVITPSEEMNRINEME-DLKLGNVDTKLGDGLAE-----HLEVGSIFTFRVTVL 1088

Query:   167 QAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQN 213
             QA GI  EY+DIFCQFNFLHRHDEAFSTEP+KNTG+G PLGFYH+QN
Sbjct:  1089 QASGIPAEYADIFCQFNFLHRHDEAFSTEPLKNTGRGAPLGFYHVQN 1135

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0048918 "posterior lateral line nerve development" evidence=IMP

GO:0048917 "posterior lateral line ganglion development" evidence=IMP

GO:0008298 "intracellular mRNA localization" evidence=IMP

GO:0048675 "axon extension" evidence=IMP

UNIPROTKB|E2R9C4 KIF1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 4.6e-46, Sum P(2) = 4.6e-46
 Identities = 49/77 (63%), Positives = 58/77 (75%)

Query:   137 DSSICSDVKEEEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEP 196
             D  +  +   EE   HL  G+   FR+TVLQA GI  EY+DIFCQFNFLHRHDEAFSTEP
Sbjct:  1094 DGKMVMEGFSEEVGNHLKLGSAFTFRVTVLQASGILPEYADIFCQFNFLHRHDEAFSTEP 1153

Query:   197 VKNTGKGTPLGFYHIQN 213
             +KN G+G+PLGFYH+QN
Sbjct:  1154 LKNNGRGSPLGFYHVQN 1170

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0007274 "neuromuscular synaptic transmission" evidence=IEA

GO:0007270 "neuron-neuron synaptic transmission" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E1C889 KIF1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 268 (99.4 bits), Expect = 5.5e-46, Sum P(2) = 5.5e-46
 Identities = 49/67 (73%), Positives = 55/67 (82%)

Query:   147 EEPPPHLSPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPL 206
             EE   HL  G+   FR+TVLQA GI  EY+DIFCQFNFLHRHDEAFSTEP+KN G+GTPL
Sbjct:  1059 EEIGNHLKLGSVFTFRVTVLQASGILPEYADIFCQFNFLHRHDEAFSTEPLKNNGRGTPL 1118

Query:   207 GFYHIQN 213
             GFYH+QN
Sbjct:  1119 GFYHVQN 1125

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007270 "neuron-neuron synaptic transmission" evidence=IEA

GO:0007274 "neuromuscular synaptic transmission" evidence=IEA

GO:0008089 "anterograde axon cargo transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0047497 "mitochondrion transport along microtubule" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	305
pfam12423	42	pfam12423, KIF1B, Kinesin protein 1B	3e-07

>gnl|CDD|221571 pfam12423, KIF1B, Kinesin protein 1B

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 2  MREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGR 42
          MREMY N  E          +     DPFY+      L+G 
Sbjct: 8  MREMYQNYDE------PEYSQHFKEEDPFYEPPENHSLIGV 42

This domain family is found in eukaryotes, and is approximately 50 amino acids in length. The family is found in association with pfam00225, pfam00498. KIF1B is an anterograde motor for transport of mitochondria in axons of neuronal cells. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG0241|consensus	1714		100.0
KOG0245|consensus	1221		100.0
PF12423	45	KIF1B: Kinesin protein 1B; InterPro: IPR022140 Thi	99.05
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	96.76
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	96.2
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	96.1
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	96.02
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	96.01
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	95.95
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	95.94
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	95.89
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	95.73
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	95.73
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	95.63
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	95.58
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	95.56
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	95.45
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	95.35
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	95.27
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	95.12
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	95.03
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	94.95
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	94.79
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	94.78
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	94.74
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	94.68
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	94.67
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	94.55
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	94.55
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	94.49
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	94.41
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	94.4
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	94.38
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	94.37
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	94.3
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	94.16
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	94.16
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	94.07
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	93.96
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	93.93
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	93.89
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	93.85
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	93.85
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	93.85
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	93.72
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	93.67
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	93.62
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	93.61
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	93.58
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	93.35
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	93.26
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	93.2
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	92.91
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	92.87
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	92.78
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	92.35
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	92.27
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	92.18
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	91.89
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	91.61
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	91.49
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	91.26
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	91.2
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	91.18
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	91.15
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	90.93
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	90.65
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	90.07
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	89.98
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	89.72
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	89.62
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	89.61
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	89.17
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	88.88
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	88.56
cd00030	102	C2 C2 domain. The C2 domain was first identified i	88.08
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	87.86
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	87.73
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	87.42
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	87.31
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	87.3
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	86.57
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	86.46
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	85.76
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	85.03
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	84.82
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	83.96
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	83.12
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	80.91
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	80.4
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	80.11

>KOG0241|consensus

Probab=100.00  E-value=2.8e-50  Score=414.45  Aligned_cols=229  Identities=23%  Similarity=0.357  Sum_probs=193.1

Q ss_pred             ChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEEEe
Q psy7271           1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV   80 (305)
Q Consensus         1 lMrEmYq~~~e~~~~~~d~~~~~~~~~DPFyd~~~~~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~p~   80 (305)
                      +||||||.|++.-..   ......+..|||||.+++|+|||+|||||++|+|+|+|+|+||||||+|+|+|+|+|+|.++
T Consensus       737 DMRd~Yqe~ke~~~~---~~~~~~k~~DPFyesQEnhnLiGVANvFLE~LF~DvkL~Y~vPIIsQqGEVAGRLhVev~Rv  813 (1714)
T KOG0241|consen  737 DMRDLYQEWKEKVPP---AKRLYGKRGDPFYESQENHNLIGVANVFLEVLFHDVKLQYAVPIISQQGEVAGRLHVEVMRV  813 (1714)
T ss_pred             hHHHHHHHHHhcCCc---hhhhccccCCccccccccccchhhHHHHHHHHHhhheeccccceecccccccceeEEEEEEe
Confidence            599999999987642   23456778999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcCccccccccceeeeeccccccccCCceeeecCCCCCCCCCCCccCCCCCCCCCCccCCCCCCCCCCCCCCCCeeE
Q psy7271          81 TDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQ  160 (305)
Q Consensus        81 ~~~~~~~~~~~v~qs~~~~f~~d~~~~~~~~r~veg~~~~~~~~~e~~~~~~~~~~dss~~~~~~~~e~p~~L~lG~~~~  160 (305)
                      +++.+.+                         ++.|        +++. +.                ..|.. ..+++++
T Consensus       814 ~gq~~~~-------------------------~~gg--------dev~-e~----------------~~~~~-~~~~~lt  842 (1714)
T KOG0241|consen  814 TGQVPER-------------------------VVGG--------DEVV-ES----------------SGEII-HRVKKLT  842 (1714)
T ss_pred             ccccchh-------------------------hccc--------cccc-cC----------------CCccc-cccceEE
Confidence            9888764                         2211        0110 00                01323 3899999


Q ss_pred             EEEEEeeccCCCcccCc-eEEEEEeCCCCccceeeCcccCCC-----CCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         161 FRITVLQAVGISTEYSD-IFCQFNFLHRHDEAFSTEPVKNTG-----KGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       161 FrVtIlqAsGLp~~ysd-VFCQy~F~~~~ee~fsTePvknt~-----~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      |||+|++|+|||..+++ |||||+||+++|.+.+ .|+.+..     ...++.|+|++.|+|+||||  ||+|+.+++|+
T Consensus       843 CrVkIk~AtGLP~~LSnFVFCqYtFw~~~E~~vv-aP~vd~ss~~~~~~~~v~FeH~~df~V~vtEe--FlE~~~dgALa  919 (1714)
T KOG0241|consen  843 CRVKIKEATGLPLNLSNFVFCQYTFWDQQESTVV-APVVDPSSQSKDAQYTVIFEHCKDFVVNVTEE--FLEHISDGALA  919 (1714)
T ss_pred             EEEEEeeccCCcccccceEEEEeeecccccceee-eeccccccccCCCCeEEEeecccceEEeehHH--HHHHhhcCceE
Confidence            99999999999999999 9999999999996665 4654431     13478899999999999999  99999999999


Q ss_pred             EEEeeccccccccc-----ccccccccccccccccccc-----------------CcccccceeecCCCccccce
Q psy7271         235 YQVWCSPLALYITS-----VCQPLMVNMSRLWWSTVMN-----------------SRVEAYSCFTREYRGVFDLP  287 (305)
Q Consensus       235 fEVwG~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~-----------------~~v~~~~~~~~~~~~~~d~~  287 (305)
                      |||||||.++....     .+|++ +|+++.||.+|++                 +||+..++.+.+++|+|+|-
T Consensus       920 IEVwGHr~~g~~~~iwe~d~~qaK-trsL~dRW~EvtRriE~Wvei~ElNenGey~~VEv~~a~dV~TGGI~QLr  993 (1714)
T KOG0241|consen  920 IEVWGHRIAGNGSSIWEVDSLQAK-TRSLHDRWNEVTRRIEMWVEILELNENGEYAPVEVHQAKDVNTGGIFQLR  993 (1714)
T ss_pred             EEEeeccccCCCcccccchhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhccCCCcceeEEeecccccccceeEec
Confidence            99999999875443     56885 9999999999998                 59999999999999998873

>KOG0245|consensus

Probab=100.00  E-value=9.2e-35  Score=303.28  Aligned_cols=250  Identities=33%  Similarity=0.512  Sum_probs=209.2

Q ss_pred             ChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCceEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEEEe
Q psy7271           1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV   80 (305)
Q Consensus         1 lMrEmYq~~~e~~~~~~d~~~~~~~~~DPFyd~~~~~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~p~   80 (305)
                      +||+||....+......++.++..++.||||++++|+.++| ++|||+||+|++||.++++|++.+|+++|.|+|+++|+
T Consensus       748 ~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g-~~~~l~~l~~~~~l~~~~~~~~~~g~~kg~lt~~~~~~  826 (1221)
T KOG0245|consen  748 MIRELGEQEAEMATSDGDESEDIATGSDPFYERRHWFKLLG-ILVRLSSLAYPVPLIAKKAIVELQGQEKGMLTVAVQPV  826 (1221)
T ss_pred             HHHHhchhhhhhcccCCCccccccccCCccccchhHHHHHH-HHHHHHhcccchhHHHhhhhhhhhccccceeeeecccc
Confidence            48999999999988888888999999999999999999999 89999999999999999999999999999999999999


Q ss_pred             cCCCcCccccccccceeeeeccccccccCCceeeecCCCCCCCCCCCccCCCCCCCCCCccCCCCCCCCCCCCCCCCeeE
Q psy7271          81 TDEESTDLTGTVKQSARIIFDDDQQTGRNNKKAVEDSGHQGDKVEDSECDGDSGRGDSSICSDVKEEEPPPHLSPGTELQ  160 (305)
Q Consensus        81 ~~~~~~~~~~~v~qs~~~~f~~d~~~~~~~~r~veg~~~~~~~~~e~~~~~~~~~~dss~~~~~~~~e~p~~L~lG~~~~  160 (305)
                      ..++.+.             |-      .+++.+++.+..    +++                   ++.+.++++|..++
T Consensus       827 ~~d~e~~-------------d~------e~~~~~~~~~~~----~~v-------------------s~~~~~~~~~~~~~  864 (1221)
T KOG0245|consen  827 EADDEEL-------------DY------EELRIVHGQGAA----EEV-------------------SAILEDLQSGLSFT  864 (1221)
T ss_pred             ccCCccc-------------ch------hhhccccccCch----hhc-------------------cccccccccCCCcc
Confidence            8655442             11      112445443310    111                   12356788999999


Q ss_pred             EEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeec
Q psy7271         161 FRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCS  240 (305)
Q Consensus       161 FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~  240 (305)
                      |++++.+|.+++.++.++||||+|+++++++++++|++|++.|++..|+|++++.++++++  ++.|+++.+..||+|||
T Consensus       865 ~~~s~~~a~~~~~~~~~~~~~~~fl~~~~~~~s~~~l~~~g~~~~~~~~h~~~~~~~~~~~--~~~~~~s~~~~~eq~~~  942 (1221)
T KOG0245|consen  865 FRVSVIEAVDIAMEDLDSNCQERFLHRKDEALSGTPLQNSGRGGPGVRYHVTNFAVKIDKS--EVFYFKSNPQHFEQFGH  942 (1221)
T ss_pred             cchhhhhhccchhhhhhcccchhhccccccccccCccccCCCCCCcccccccccccccccc--hhhhhccCcceeeeccc
Confidence            9999999999999999999999999999999999999999999999999999999999999  89999999999999998


Q ss_pred             cc------cccccccccccccccccccccccccC--cccc--cceeec----CCCccccceeeeeccccCC
Q psy7271         241 PL------ALYITSVCQPLMVNMSRLWWSTVMNS--RVEA--YSCFTR----EYRGVFDLPLYTNKCPKYD  297 (305)
Q Consensus       241 ~~------~~~~~~~~~~~~~~~~r~~~~~~~~~--~v~~--~~~~~~----~~~~~~d~~~~~~~~~~~~  297 (305)
                      -.      +.-+.+.+++  ++..|++++++|++  |||+  +.....    .-.++||+|+||+|||+-.
T Consensus       943 ~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~~k~l~~~L~~fe~~e~~~ 1011 (1221)
T KOG0245|consen  943 YQSGQQPSPLSPQELVSP--TRCSRERRPPSMPRSKPVRATSLAKLSANRNGSVKSLETLLQWFEICEHEA 1011 (1221)
T ss_pred             cccccccCCccchhcccc--cccchhccCCCccccccccchHHHhhhhhccchhhcchhhHHHhhhhhhhc
Confidence            55      3344445555  48888999988877  7777  333333    3344999999999999864

>PF12423 KIF1B: Kinesin protein 1B; InterPro: IPR022140 This domain family is found in eukaryotes, and is approximately 50 amino acids in length

Probab=99.05  E-value=6e-11  Score=83.41  Aligned_cols=39  Identities=31%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             ChhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q psy7271           1 MMREMYHNEAEMSPTSPDYNIESLTGGDPFYDRFPWFRLVGR   42 (305)
Q Consensus         1 lMrEmYq~~~e~~~~~~d~~~~~~~~~DPFyd~~~~~~lIGr   42 (305)
                      +||||||++++.+...   .....++.|||||+++|++|||+
T Consensus         7 ~MRemYq~~~~~~~~~---~~~~~~~~DPF~e~~e~~~lIGv   45 (45)
T PF12423_consen    7 DMREMYQQYKENDFPE---YDQHFKEDDPFYEPQENHSLIGV   45 (45)
T ss_pred             HHHHHHHHHHhcCCcc---ccccCCCCCCCCCCCccccccCc
Confidence            5999999996433211   22377889999999999999996

The family is found in association with PF00225 from PFAM, PF00498 from PFAM. KIF1B is an anterograde motor for transport of mitochondria in axons of neuronal cells.

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=96.76  E-value=0.015  Score=42.78  Aligned_cols=70  Identities=16%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             EEEEeeccCCCc-c---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         162 RITVLQAVGIST-E---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       162 rVtIlqAsGLp~-~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      +|+|.+|.||+. .   ..+.||+..+.......+.|...+++   ..+.|+..  |.+.+...  ..   +  .|.|+|
T Consensus         2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~---~~P~w~e~--~~~~~~~~--~~---~--~l~~~V   69 (85)
T PF00168_consen    2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT---SNPVWNEE--FEFPLDDP--DL---D--SLSFEV   69 (85)
T ss_dssp             EEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB---SSEEEEEE--EEEEESHG--CG---T--EEEEEE
T ss_pred             EEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc---ccceeeee--eeeeeecc--cc---c--ceEEEE
Confidence            689999999997 2   34599999999876667888888777   35778854  55555554  22   2  299999


Q ss_pred             eecccc
Q psy7271         238 WCSPLA  243 (305)
Q Consensus       238 wG~~~~  243 (305)
                      |....-
T Consensus        70 ~~~~~~   75 (85)
T PF00168_consen   70 WDKDSF   75 (85)
T ss_dssp             EEETSS
T ss_pred             EECCCC
Confidence            987543

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=96.20  E-value=0.03  Score=45.13  Aligned_cols=74  Identities=12%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             EEEEEEeeccCCCc-----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      ..+|+|.+|.+|+.     ..+|-||+..+.........|+-++++   ..+.|+.+-.|.  ++..  -+  ..+..|.
T Consensus         2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t---~nP~Wne~f~f~--~~~~--~~--~~~~~l~   72 (111)
T cd04041           2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKD---LNPVWEETWFVL--VTPD--EV--KAGERLS   72 (111)
T ss_pred             EEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCC---CCCccceeEEEE--eCch--hc--cCCCEEE
Confidence            46899999999985     356799999987655556788887776   356788775443  4332  11  3456799


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus        73 ~~V~d~d~   80 (111)
T cd04041          73 CRLWDSDR   80 (111)
T ss_pred             EEEEeCCC
Confidence            99998854

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=96.10  E-value=0.03  Score=46.93  Aligned_cols=71  Identities=15%  Similarity=0.189  Sum_probs=55.7

Q ss_pred             EEEEEeeccCCCc----ccCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         161 FRITVLQAVGIST----EYSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ..|+|.+|.+|++    ..+|.|++-..+.+..   ..+.|...+++   ..+.|++.  |++.|+.+  .   |++..|
T Consensus        16 L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t---~nPvfnE~--F~f~v~~~--~---L~~~~L   85 (124)
T cd08680          16 LVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ---DKPVFNEV--FRVPISST--K---LYQKTL   85 (124)
T ss_pred             EEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC---CCCccccE--EEEECCHH--H---hhcCEE
Confidence            6789999999986    3678999999987663   36778877666   35678888  66667776  3   688999


Q ss_pred             EEEEeecc
Q psy7271         234 IYQVWCSP  241 (305)
Q Consensus       234 ~fEVwG~~  241 (305)
                      .|.||.+.
T Consensus        86 ~~~V~~~~   93 (124)
T cd08680          86 QVDVCSVG   93 (124)
T ss_pred             EEEEEeCC
Confidence            99999974

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=96.02  E-value=0.0043  Score=51.29  Aligned_cols=55  Identities=18%  Similarity=0.260  Sum_probs=32.6

Q ss_pred             eEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeec
Q psy7271         178 IFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCS  240 (305)
Q Consensus       178 VFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~  240 (305)
                      +||-|.|+. +| +-+|+-+.    |..+.|+.+-.+.|.+..-  |++|||++.+.+|++=-
T Consensus         1 tFct~dFyd-fE-tq~Tpvv~----G~~p~y~fts~y~V~~d~~--fl~YLq~~~~~lELhqa   55 (107)
T PF11618_consen    1 TFCTYDFYD-FE-TQTTPVVR----GLNPFYDFTSQYKVTMDDL--FLHYLQTGSLTLELHQA   55 (107)
T ss_dssp             EEEEE-STT-----EE---EE----SSS----EEEEEEE--SHH--HHHHHHH--EEEEEEEE
T ss_pred             CEEEEEeec-ee-eeccccee----CCCccceeEEEEEEEcCHH--HHHHhhcCCEEEEEEee
Confidence            699999997 44 45554443    2356788888898888887  99999999999999854

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=96.01  E-value=0.034  Score=45.28  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      +++|+|.+|.+|+..    .+|.||+..+.......+.|+.++++   ..+.|+.+  |.+.++.+  .   +++..|.|
T Consensus        17 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t---~nP~wne~--f~f~i~~~--~---l~~~~l~~   86 (124)
T cd08385          17 QLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT---LNPVFNET--FTFKVPYS--E---LGNKTLVF   86 (124)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCC---CCCceeee--EEEeCCHH--H---hCCCEEEE
Confidence            478999999999853    46799999887655456778877766   35678877  44455554  2   35678999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||.+..
T Consensus        87 ~V~d~d~   93 (124)
T cd08385          87 SVYDFDR   93 (124)
T ss_pred             EEEeCCC
Confidence            9998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=95.95  E-value=0.045  Score=44.97  Aligned_cols=72  Identities=19%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|++|.||+..    .+|-||+..+..   ....|..++++   ..+.|+..-.|.  +...  ..+-.....|.|+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~---~~~kT~v~~~t---~nP~Wne~f~F~--v~~~--~~~~~~~~~l~~~   70 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK---EKYSTSVKEKT---TSPVWKEECSFE--LPGL--LSGNGNRATLQLT   70 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC---eeeeeeeecCC---CCCEeCceEEEE--ecCc--ccCCCcCCEEEEE
Confidence            37999999999854    467999998853   34678877776   356788875554  4443  2233566789999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||.+..
T Consensus        71 v~d~~~   76 (126)
T cd08682          71 VMHRNL   76 (126)
T ss_pred             EEEccc
Confidence            999854

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=95.94  E-value=0.039  Score=44.94  Aligned_cols=73  Identities=12%  Similarity=0.043  Sum_probs=53.2

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|++|.+|+..    .+|.||+..+....  .....|+.++++.   .+.|+++  |.+.++.+  .   +++..|
T Consensus        17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~---nP~wne~--f~f~i~~~--~---l~~~~l   86 (127)
T cd04030          17 KLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNL---NPVFDET--FEFPVSLE--E---LKRRTL   86 (127)
T ss_pred             EEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCC---CCEECeE--EEEecCHH--H---hcCCEE
Confidence            378999999999853    46799999997643  2356788887763   5679887  44456554  2   467789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|.||.+..
T Consensus        87 ~i~v~~~~~   95 (127)
T cd04030          87 DVAVKNSKS   95 (127)
T ss_pred             EEEEEECCc
Confidence            999998753

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=95.89  E-value=0.036  Score=46.20  Aligned_cols=74  Identities=11%  Similarity=0.158  Sum_probs=53.2

Q ss_pred             eEEEEEEeeccCCCc-----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         159 LQFRITVLQAVGIST-----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      -+++|+|.+|.+||.     ..+|.||+..+.........|+.++++   ..+.|+.+-.|. .++.+  -   +++..|
T Consensus        16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t---~nP~wnE~F~f~-~~~~~--~---~~~~~L   86 (128)
T cd08388          16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKT---RNPVYDETFTFY-GIPYN--Q---LQDLSL   86 (128)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCC---CCCceeeEEEEc-ccCHH--H---hCCCEE
Confidence            367899999999996     346899999997655545678877776   356788774441 34433  2   456689


Q ss_pred             EEEEeecc
Q psy7271         234 IYQVWCSP  241 (305)
Q Consensus       234 ~fEVwG~~  241 (305)
                      .|+||-+.
T Consensus        87 ~~~V~d~d   94 (128)
T cd08388          87 HFAVLSFD   94 (128)
T ss_pred             EEEEEEcC
Confidence            99999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=95.73  E-value=0.048  Score=47.79  Aligned_cols=75  Identities=13%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             EEEeeccC--CCcc----cCceEEEEEeCC--CCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         163 ITVLQAVG--ISTE----YSDIFCQFNFLH--RHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       163 VtIlqAsG--Lp~~----ysdVFCQy~F~~--~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      |+|..|.|  ||..    .+|.|++|.|..  +......|.-+++|.   ++.|+..-.|.|+-.... |...+++.+|.
T Consensus         6 l~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~Tl---nPvfNE~f~f~I~~~~~~-~~R~l~~~~L~   81 (155)
T cd08690           6 LTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTN---SPEYNESFKLNINRKHRS-FQRVFKRHGLK   81 (155)
T ss_pred             EEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCC---CCcccceEEEEeccccch-hhhhccCCcEE
Confidence            57777777  4543    467999999843  333467788888873   567999988877543221 55578999999


Q ss_pred             EEEeecc
Q psy7271         235 YQVWCSP  241 (305)
Q Consensus       235 fEVwG~~  241 (305)
                      ||||=+.
T Consensus        82 ~~V~d~~   88 (155)
T cd08690          82 FEVYHKG   88 (155)
T ss_pred             EEEEeCC
Confidence            9999764

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=95.73  E-value=0.046  Score=44.68  Aligned_cols=73  Identities=18%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ++.|+|.+|.+|+..    .+|.||+..+.....+  ...|+.++++   ..+.|+.+  |.+.++..  .   ++...|
T Consensus        15 ~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~---~~P~wne~--f~f~i~~~--~---l~~~~l   84 (134)
T cd00276          15 RLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGT---LNPVFNEA--FSFDVPAE--Q---LEEVSL   84 (134)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecC---CCCeeeee--EEEECCHH--H---hCCcEE
Confidence            478999999999863    5679999999776443  3467766655   35678876  55557665  3   467789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        85 ~~~v~d~~~   93 (134)
T cd00276          85 VITVVDKDS   93 (134)
T ss_pred             EEEEEecCC
Confidence            999999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=95.63  E-value=0.041  Score=44.18  Aligned_cols=75  Identities=13%  Similarity=0.008  Sum_probs=53.9

Q ss_pred             CeeEEEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         157 TELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       157 ~~~~FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      +.+..+|+|.+|.+|+...+|-||+.++.++.   ..|...+++   ..+.|+.+-.|.+....+     -+++..|.|+
T Consensus         2 ~~~~l~V~v~~a~~L~~~~~dpyv~v~~~~~~---~kT~~~~~t---~nP~wne~f~f~~~~~~~-----~l~~~~l~i~   70 (111)
T cd04011           2 QDFQVRVRVIEARQLVGGNIDPVVKVEVGGQK---KYTSVKKGT---NCPFYNEYFFFNFHESPD-----ELFDKIIKIS   70 (111)
T ss_pred             CcEEEEEEEEEcccCCCCCCCCEEEEEECCEe---eeeeEEecc---CCCccccEEEEecCCCHH-----HHhcCeEEEE
Confidence            46789999999999997778899999998643   346655555   345688665554333332     2467789999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||.+..
T Consensus        71 V~d~~~   76 (111)
T cd04011          71 VYDSRS   76 (111)
T ss_pred             EEcCcc
Confidence            999754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=95.58  E-value=0.057  Score=44.03  Aligned_cols=73  Identities=11%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|.+|.+|+..    .+|.||+..+.......+.|+.++++   ..+.|+..  |.+.++.+  .   +.+..|.|
T Consensus        17 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t---~~P~wne~--f~f~v~~~--~---l~~~~l~i   86 (124)
T cd08387          17 ILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKT---LNPEFDES--FVFEVPPQ--E---LPKRTLEV   86 (124)
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCC---CCCCcccE--EEEeCCHH--H---hCCCEEEE
Confidence            467999999999853    46799999986544446778877776   34568776  55567765  3   46778999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||.+..
T Consensus        87 ~V~d~~~   93 (124)
T cd08387          87 LLYDFDQ   93 (124)
T ss_pred             EEEECCC
Confidence            9998743

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=95.56  E-value=0.077  Score=43.03  Aligned_cols=70  Identities=16%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      ++|+|.+|.+|+..    .+|-||+..+.+.......|+.++++   .++.|+..-.|  .+...       ....|.|+
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t---~nP~Wne~f~f--~i~~~-------~~~~l~v~   69 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS---INPVWNETFEF--RIQSQ-------VKNVLELT   69 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCC---CCCccceEEEE--EeCcc-------cCCEEEEE
Confidence            47999999999864    46799999987655556778888776   35678876444  45443       23469999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||.+..
T Consensus        70 v~d~d~   75 (119)
T cd04036          70 VMDEDY   75 (119)
T ss_pred             EEECCC
Confidence            999754

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=95.45  E-value=0.067  Score=43.29  Aligned_cols=73  Identities=12%  Similarity=0.174  Sum_probs=51.9

Q ss_pred             EEEEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      .+.|+|.+|.+|+..     .+|.||+..+..+......|+..+++   ..+.|+.+  |++.++..  -   +++..|.
T Consensus        15 ~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~---~~P~wne~--f~f~i~~~--~---l~~~~l~   84 (123)
T cd08390          15 QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT---QNPNFDET--FVFQVSFK--E---LQRRTLR   84 (123)
T ss_pred             EEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCC---CCCccceE--EEEEcCHH--H---hcccEEE
Confidence            467999999999853     45799999987655545667766665   35678776  45556554  2   3566899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||.+..
T Consensus        85 i~v~d~~~   92 (123)
T cd08390          85 LSVYDVDR   92 (123)
T ss_pred             EEEEECCc
Confidence            99998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=95.35  E-value=0.061  Score=44.46  Aligned_cols=73  Identities=16%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             EEEEEEeeccCCCcc-----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ...|+|++|.+|++.     .+|.|++..++....  ....|+.++++   .++.|+.+  |.+.++.+  .   +++..
T Consensus        16 ~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t---~nP~~nE~--f~f~v~~~--~---l~~~~   85 (125)
T cd08393          16 ELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKT---LNPVFNET--LRYKVERE--E---LPTRV   85 (125)
T ss_pred             EEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCC---CCCccCce--EEEECCHH--H---hCCCE
Confidence            368999999999963     467999999976543  23567777777   35678877  55567665  3   47778


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||.+..
T Consensus        86 L~~~V~d~~~   95 (125)
T cd08393          86 LNLSVWHRDS   95 (125)
T ss_pred             EEEEEEeCCC
Confidence            9999999753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=95.27  E-value=0.21  Score=41.71  Aligned_cols=76  Identities=20%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             eEEEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEE-eecCCccccccccC-Cc
Q psy7271         159 LQFRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTS-ATAAHAAPLHPHQS-TS  232 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V-~VTee~~fl~yl~~-~~  232 (305)
                      +.++|+|.+|.+|+.    ..+|-||...+.+.   ...|+.++++   .++.|+..-.|.+ .+...  .-++..+ ..
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~v~~~t---~nP~Wne~~~f~~~~~~~~--~~~~~~~~~~   72 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQ---SQETEVIKET---LSPTWDQTLIFDEVELYGS--PEEIAQNPPL   72 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCe---eeEeeeEcCC---CCCccCcEEEEeeeeccCC--hHHhhcCCCE
Confidence            468999999999985    25779999998653   4567777776   3567888866653 33211  1112222 45


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        73 l~v~V~d~d~   82 (135)
T cd04017          73 VVVELFDQDS   82 (135)
T ss_pred             EEEEEEeCcC
Confidence            8999998754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=95.12  E-value=0.14  Score=41.76  Aligned_cols=71  Identities=14%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      .|.|+|.+|.+|+..    .+|.||+....+.......|+.++++   ..+.|+..  |.+.++..       ....|.|
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t---~~P~Wne~--f~f~i~~~-------~~~~L~i   69 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT---LNPRWDEE--FELEVPAG-------EPLWISA   69 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC---CCCcccce--EEEEcCCC-------CCCEEEE
Confidence            578999999999853    46799999765443345677777766   24568766  55556654       2457999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        70 ~v~d~d~   76 (126)
T cd04043          70 TVWDRSF   76 (126)
T ss_pred             EEEECCC
Confidence            9998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=95.03  E-value=0.15  Score=40.96  Aligned_cols=70  Identities=11%  Similarity=0.100  Sum_probs=48.1

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      +.+|+|.+|.+|+..    -+|-||+..+.+   ....|+.+++.+  ..+.|+..=.|  .|...       .+..|.|
T Consensus         2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~--~nP~Wne~f~f--~v~~~-------~~~~l~i   67 (118)
T cd08681           2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGG--QHPEWDEELRF--EITED-------KKPILKV   67 (118)
T ss_pred             EEEEEEEEccCCCCCCcCCCCCceEEEEECC---CccccccccCCC--CCCccCceEEE--EecCC-------CCCEEEE
Confidence            468999999999853    457999998865   234567665432  34578877444  45543       3457999


Q ss_pred             EEeecccc
Q psy7271         236 QVWCSPLA  243 (305)
Q Consensus       236 EVwG~~~~  243 (305)
                      +||-++..
T Consensus        68 ~v~d~~~~   75 (118)
T cd08681          68 AVFDDDKR   75 (118)
T ss_pred             EEEeCCCC
Confidence            99997653

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=94.95  E-value=0.11  Score=43.10  Aligned_cols=73  Identities=14%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             EEEEEEeeccCCCc----ccCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGIST----EYSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      +++|+|++|.+|+.    ..+|-||+..+....  .....|+.++++   ..+.|+++  |.+.+..+  -   ++...|
T Consensus        16 ~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~i~~~--~---l~~~~l   85 (136)
T cd08402          16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRT---LNPYYNES--FSFEVPFE--Q---IQKVHL   85 (136)
T ss_pred             eEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCC---CCCcccce--EEEECCHH--H---hCCCEE
Confidence            48899999999985    357899999886422  234556666665   35678876  44455544  2   356689


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        86 ~~~v~d~~~   94 (136)
T cd08402          86 IVTVLDYDR   94 (136)
T ss_pred             EEEEEeCCC
Confidence            999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=94.79  E-value=0.15  Score=42.41  Aligned_cols=75  Identities=20%  Similarity=0.157  Sum_probs=51.6

Q ss_pred             EEEEEEeeccCCCc----ccCceEEEEEeCCCC----ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCC
Q psy7271         160 QFRITVLQAVGIST----EYSDIFCQFNFLHRH----DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQST  231 (305)
Q Consensus       160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~----ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~  231 (305)
                      .++|+|.+|.+|+.    ..+|.||+..+....    .....|+.++++   ..+.|+..-  .+.++..  - .-+...
T Consensus        17 ~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t---~nP~wnE~f--~f~i~~~--~-~~~~~~   88 (133)
T cd04009          17 SLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT---LFPLFDESF--EFNVPPE--Q-CSVEGA   88 (133)
T ss_pred             EEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC---CCCccCCEE--EEEechh--h-cccCCC
Confidence            47899999999986    357899999987543    235678887777   345687664  4445442  1 113456


Q ss_pred             cEEEEEeeccc
Q psy7271         232 SQIYQVWCSPL  242 (305)
Q Consensus       232 ~L~fEVwG~~~  242 (305)
                      .|.|+||.+..
T Consensus        89 ~l~~~V~d~d~   99 (133)
T cd04009          89 LLLFTVKDYDL   99 (133)
T ss_pred             EEEEEEEecCC
Confidence            79999998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=94.78  E-value=0.12  Score=43.84  Aligned_cols=99  Identities=17%  Similarity=0.150  Sum_probs=63.3

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ...|+|++|.+|+..    .+|-||+..++.....  ...|...+++   .++.|+++-.|  .|+++  .   |++..|
T Consensus        16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t---~nP~~nE~f~F--~v~~~--~---l~~~~l   85 (136)
T cd08406          16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDD---TNPIFNEAMIF--SVPAI--V---LQDLSL   85 (136)
T ss_pred             EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCC---CCCeeceeEEE--ECCHH--H---hCCcEE
Confidence            468999999999963    5789999999865432  2345555555   35679888555  46665  2   688899


Q ss_pred             EEEEeecccccc---ccc-cccccccccccccccccccC
Q psy7271         234 IYQVWCSPLALY---ITS-VCQPLMVNMSRLWWSTVMNS  268 (305)
Q Consensus       234 ~fEVwG~~~~~~---~~~-~~~~~~~~~~r~~~~~~~~~  268 (305)
                      .|+||.+..-+-   +=+ ++.+.....-+++|-..|+.
T Consensus        86 ~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~  124 (136)
T cd08406          86 RVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLAS  124 (136)
T ss_pred             EEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHC
Confidence            999999865211   111 22222233446677666653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=94.74  E-value=0.17  Score=42.68  Aligned_cols=68  Identities=10%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|++|.+|+..    .+|-||+..+-+   ..+.|+.++++   ..+.|+.+-.|  .+++.       ....|.|
T Consensus        16 ~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~~t---~nP~Wne~f~f--~v~~~-------~~~~l~i   80 (136)
T cd08375          16 RLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVSDT---LNPKWNSSMQF--FVKDL-------EQDVLCI   80 (136)
T ss_pred             EEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccCCC---CCCccCceEEE--EecCc-------cCCEEEE
Confidence            488999999999853    567999998743   35778888776   35678887444  45442       3567999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        81 ~V~D~d~   87 (136)
T cd08375          81 TVFDRDF   87 (136)
T ss_pred             EEEECCC
Confidence            9998753

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=94.68  E-value=0.11  Score=43.69  Aligned_cols=100  Identities=13%  Similarity=0.185  Sum_probs=64.0

Q ss_pred             EEEEEEeeccCCCcc---cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      +..|+|++|.+|+..   .+|.|++-.+.....  ....|...+++   .++.|+..  |...|+++  .   |.+..|.
T Consensus        16 ~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~---~nP~fnE~--F~f~i~~~--~---l~~~~L~   85 (137)
T cd08409          16 RLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGA---ASPSFNES--FSFKVTSR--Q---LDTASLS   85 (137)
T ss_pred             eEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCC---CCCcccce--EEEECCHH--H---hCccEEE
Confidence            478999999999854   468999999886432  23456665555   35678877  55567766  3   5778899


Q ss_pred             EEEeecccc---cccccccccc---ccccccccccccccCc
Q psy7271         235 YQVWCSPLA---LYITSVCQPL---MVNMSRLWWSTVMNSR  269 (305)
Q Consensus       235 fEVwG~~~~---~~~~~~~~~~---~~~~~r~~~~~~~~~~  269 (305)
                      |+||.+..-   ..+-++.-.+   -.-..+.+|-+.|..|
T Consensus        86 ~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p  126 (137)
T cd08409          86 LSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKP  126 (137)
T ss_pred             EEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCC
Confidence            999987641   1111221111   1124467787777753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=94.67  E-value=0.15  Score=42.33  Aligned_cols=71  Identities=14%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             EEEEEeeccCCCcc-----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         161 FRITVLQAVGISTE-----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       161 FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ..|+|++|.+|++.     .+|.|++..+.....  ....|+..+++   ..+.|+.+  |.+.|+.+  .   |.+..|
T Consensus        17 L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t---~nP~wnE~--f~f~i~~~--~---l~~~~L   86 (125)
T cd04029          17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNT---TNPVYNET--LKYSISHS--Q---LETRTL   86 (125)
T ss_pred             EEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCC---CCCcccce--EEEECCHH--H---hCCCEE
Confidence            67899999999853     467999998875442  23456666665   35668776  55556665  3   477789


Q ss_pred             EEEEeecc
Q psy7271         234 IYQVWCSP  241 (305)
Q Consensus       234 ~fEVwG~~  241 (305)
                      .|+||.+.
T Consensus        87 ~~~V~d~~   94 (125)
T cd04029          87 QLSVWHYD   94 (125)
T ss_pred             EEEEEECC
Confidence            99999764

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=94.55  E-value=0.21  Score=41.25  Aligned_cols=69  Identities=14%  Similarity=0.085  Sum_probs=46.9

Q ss_pred             EEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .||+|.+|.+|+.    ..+|-||+..+.+... ...|+.++++   ..+.|+..  |.+.+...       ++..|.|+
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~-~~kT~~v~~t---~nP~Wne~--f~f~~~~~-------~~~~L~~~   68 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI-NDRDNYIPNT---LNPVFGKM--FELEATLP-------GNSILKIS   68 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCeec-cceeeEEECC---CCCccceE--EEEEecCC-------CCCEEEEE
Confidence            5899999999985    3567999999865442 3445556665   34568765  44444222       34679999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||.+..
T Consensus        69 V~d~d~   74 (124)
T cd04037          69 VMDYDL   74 (124)
T ss_pred             EEECCC
Confidence            999854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=94.55  E-value=0.3  Score=39.10  Aligned_cols=67  Identities=15%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      ++|+|.+|.+|+..    .+|-||..++-+   ....|+.++++   ..+.|+.+  |.+.+.+.       ++..|.|+
T Consensus         2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~v~~~t---~nP~Wne~--f~f~~~~~-------~~~~l~v~   66 (116)
T cd08376           2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN---EKYKSKVCSKT---LNPQWLEQ--FDLHLFDD-------QSQILEIE   66 (116)
T ss_pred             EEEEEEEEECCCCCCCCCCCCcEEEEEECC---EeEecccccCC---CCCceeEE--EEEEecCC-------CCCEEEEE
Confidence            57999999999964    567999999843   23567766665   34568876  44445443       35679999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        67 v~d~~~   72 (116)
T cd08376          67 VWDKDT   72 (116)
T ss_pred             EEECCC
Confidence            998754

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=94.49  E-value=0.16  Score=43.14  Aligned_cols=73  Identities=10%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ++.|+|++|.+|+..    .+|.|++..++....   ....|...+++   ..+.|+.+  |...|+++  -   +++..
T Consensus        16 ~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t---~nPvfnEt--F~f~i~~~--~---l~~~~   85 (138)
T cd08408          16 RLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ---PDPEFKET--FVFQVALF--Q---LSEVT   85 (138)
T ss_pred             eEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC---CCCcEeee--EEEECCHH--H---hCccE
Confidence            468999999999963    468999999986432   12356655555   35678887  44456665  3   68889


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|.||.+..
T Consensus        86 L~~~V~~~~~   95 (138)
T cd08408          86 LMFSVYNKRK   95 (138)
T ss_pred             EEEEEEECCC
Confidence            9999999864

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=94.41  E-value=0.17  Score=43.32  Aligned_cols=98  Identities=10%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             EEEEEeeccCCCccc------CceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         161 FRITVLQAVGISTEY------SDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       161 FrVtIlqAsGLp~~y------sdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ..|+|++|.+|++.-      +|.||+-.++.+...  ...|...+++   .++.|+.+-.|  .|+.+  .   |.+..
T Consensus        17 L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t---~nPvfNE~f~F--~v~~~--~---L~~~~   86 (138)
T cd08407          17 LLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHK---INPVWNEMIMF--ELPSE--L---LAASS   86 (138)
T ss_pred             EEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCC---CCCccccEEEE--ECCHH--H---hCccE
Confidence            679999999998642      689999999876442  3346655555   35679888555  56665  3   68888


Q ss_pred             EEEEEeeccccc---cccc-cccccccccccccccccccC
Q psy7271         233 QIYQVWCSPLAL---YITS-VCQPLMVNMSRLWWSTVMNS  268 (305)
Q Consensus       233 L~fEVwG~~~~~---~~~~-~~~~~~~~~~r~~~~~~~~~  268 (305)
                      |.|+||-+..-+   .+-+ ++..-....-+++|-..|..
T Consensus        87 L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~  126 (138)
T cd08407          87 VELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDN  126 (138)
T ss_pred             EEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhC
Confidence            999999986521   1111 11111134456778776664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=94.40  E-value=0.16  Score=41.90  Aligned_cols=73  Identities=15%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      +..|+|.+|.||+..    .+|-||+..+.....  ....|+.++++   ..+.|+.+  |.+.++.+  -   +....|
T Consensus        14 ~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~--~---l~~~~l   83 (133)
T cd08384          14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT---LNPEFNEE--FFYDIKHS--D---LAKKTL   83 (133)
T ss_pred             EEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEecc---CCCCcccE--EEEECCHH--H---hCCCEE
Confidence            468999999999852    678999999875432  23456666665   34568777  55566655  2   456789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        84 ~~~V~d~d~   92 (133)
T cd08384          84 EITVWDKDI   92 (133)
T ss_pred             EEEEEeCCC
Confidence            999998754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=94.38  E-value=0.25  Score=39.56  Aligned_cols=67  Identities=12%  Similarity=0.186  Sum_probs=48.7

Q ss_pred             EEEEEeeccCCCcc----------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccC
Q psy7271         161 FRITVLQAVGISTE----------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQS  230 (305)
Q Consensus       161 FrVtIlqAsGLp~~----------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~  230 (305)
                      .+|+|.+|.+|+..          .+|-||...+.+   ..+.|+.++++   ..+.|+..  |.+.+++.       ..
T Consensus         3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t---~~P~W~e~--f~~~v~~~-------~~   67 (121)
T cd08391           3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKEN---LNPKWNEV--YEAVVDEV-------PG   67 (121)
T ss_pred             EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCCC---CCCcccce--EEEEeCCC-------CC
Confidence            67999999999853          467999999865   45778777776   34568876  55555543       35


Q ss_pred             CcEEEEEeeccc
Q psy7271         231 TSQIYQVWCSPL  242 (305)
Q Consensus       231 ~~L~fEVwG~~~  242 (305)
                      ..|.|+||-+..
T Consensus        68 ~~l~i~v~d~~~   79 (121)
T cd08391          68 QELEIELFDEDP   79 (121)
T ss_pred             CEEEEEEEecCC
Confidence            679999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=94.37  E-value=0.19  Score=42.04  Aligned_cols=73  Identities=18%  Similarity=0.148  Sum_probs=52.6

Q ss_pred             EEEEEEeeccCCCc-----ccCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ...|+|++|.+|++     ..+|.||+..++.....  ..-|..++++   ..+.|+.+  |...|+.+  .   |.+..
T Consensus        16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t---~nPvfNE~--F~f~v~~~--~---l~~~~   85 (128)
T cd08392          16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGT---VNPVFNET--LKYVVEAD--L---LSSRQ   85 (128)
T ss_pred             EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCC---CCCccceE--EEEEcCHH--H---hCCcE
Confidence            56789999999985     35689999999865432  3457776665   35678877  44456665  3   57788


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|.||.+..
T Consensus        86 L~v~V~~~~~   95 (128)
T cd08392          86 LQVSVWHSRT   95 (128)
T ss_pred             EEEEEEeCCC
Confidence            9999998753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=94.30  E-value=0.18  Score=40.50  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             EEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeee-eEEEEEEEeecCCccccccccCCcEEE
Q psy7271         162 RITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGF-YHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       162 rVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F-~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      +|+|.+|.+||..     .+|-||...+..   ....|+.++++   ..+.| +..  |.+.+...  .   +++..|.|
T Consensus         2 ~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~~~---~nP~W~ne~--f~f~i~~~--~---l~~~~l~i   68 (110)
T cd08688           2 KVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVKKS---LNPVWNSEW--FRFEVDDE--E---LQDEPLQI   68 (110)
T ss_pred             EEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceecCC---CCCcccCcE--EEEEcChH--H---cCCCeEEE
Confidence            6999999999842     467999999865   35667777665   35568 654  56667665  2   46778999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        69 ~V~d~d~   75 (110)
T cd08688          69 RVMDHDT   75 (110)
T ss_pred             EEEeCCC
Confidence            9999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04032 C2_Perforin C2 domain of Perforin

Probab=94.16  E-value=0.27  Score=41.43  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             EEEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      +++|+|.+|.||+..   -+|-||+..+-+.   ...|+.++++.   .+.|+.+-.|.  . ..   +  .....|.||
T Consensus        29 ~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~---~~kT~vi~~t~---nPvWNE~F~f~--~-~~---~--~~~~~L~v~   94 (127)
T cd04032          29 TLTVTVLRATGLWGDYFTSTDGYVKVFFGGQ---EKRTEVIWNNN---NPRWNATFDFG--S-VE---L--SPGGKLRFE   94 (127)
T ss_pred             EEEEEEEECCCCCcCcCCCCCeEEEEEECCc---cccCceecCCC---CCcCCCEEEEe--c-cc---C--CCCCEEEEE
Confidence            789999999999854   3468999988543   56788888773   45787774443  1 11   1  256689999


Q ss_pred             Eeecccc
Q psy7271         237 VWCSPLA  243 (305)
Q Consensus       237 VwG~~~~  243 (305)
                      ||-+...
T Consensus        95 V~D~d~~  101 (127)
T cd04032          95 VWDRDNG  101 (127)
T ss_pred             EEeCCCC
Confidence            9998653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=94.16  E-value=0.3  Score=39.65  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=47.9

Q ss_pred             EEEEEeeccCCCcc-------c-CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         161 FRITVLQAVGISTE-------Y-SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       161 FrVtIlqAsGLp~~-------y-sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ..|+|.+|.+|++.       + +|-||.+.+-.   ..+.|+.++++   .++.|+-.  |.+.+...  .    .+..
T Consensus         3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~---~~~kT~v~~~t---~nPvWne~--f~f~v~~~--~----~~~~   68 (108)
T cd04039           3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR---RVFRTSWRRHT---LNPVFNER--LAFEVYPH--E----KNFD   68 (108)
T ss_pred             EEEEEEeeeCCCCccccCCCCCccCceEEEEECC---EeEeeeeecCC---CCCcccce--EEEEEeCc--c----CCCE
Confidence            57999999999963       2 57899998832   24678888776   35568765  44455443  1    3457


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        69 L~~~V~D~d~   78 (108)
T cd04039          69 IQFKVLDKDK   78 (108)
T ss_pred             EEEEEEECCC
Confidence            9999999865

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=94.07  E-value=0.22  Score=40.28  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=51.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEee-cCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSAT-AAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~V-Tee~~fl~yl~~~~  232 (305)
                      ..+|+|.+|.+|+..    .+|.||+..+.....  ....|+.++++   ..+.|+.+  |.+.+ ..+  -   +.+..
T Consensus        17 ~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~~--~---l~~~~   86 (125)
T cd04031          17 QLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT---LNPEWNQT--FEYSNVRRE--T---LKERT   86 (125)
T ss_pred             EEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCC---CCCccccE--EEEcccCHH--H---hCCCE
Confidence            478999999999863    467999999876432  34567777776   35678765  55443 322  1   35678


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        87 l~~~V~d~~~   96 (125)
T cd04031          87 LEVTVWDYDR   96 (125)
T ss_pred             EEEEEEeCCC
Confidence            9999999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=93.96  E-value=0.21  Score=40.67  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=51.9

Q ss_pred             eEEEEEEeeccCCCc----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         159 LQFRITVLQAVGIST----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      -+++|+|.+|.+|+.    ..+|.||+..+.....  ....|+.++++   ..+.|+++-.|. .++.+     -+++..
T Consensus        15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~---~~P~Wne~f~f~-~~~~~-----~~~~~~   85 (123)
T cd04035          15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT---RNPEFNETLTYY-GITEE-----DIQRKT   85 (123)
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC---CCCCccceEEEc-CCCHH-----HhCCCE
Confidence            457999999999985    3567999998865332  24567777665   356788875442 23332     256678


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        86 l~~~v~d~~~   95 (123)
T cd04035          86 LRLLVLDEDR   95 (123)
T ss_pred             EEEEEEEcCC
Confidence            9999998754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=93.93  E-value=0.23  Score=41.17  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             EEEEEEeeccCCCc----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGIST----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ..+|+|.+|.+|+.    ..+|.||+..+.....  ....|+-.+++   ..+.|+..-.|  .++.+  -   +++..|
T Consensus        15 ~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t---~nP~wne~f~f--~i~~~--~---~~~~~l   84 (134)
T cd08403          15 RLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNT---LNPTYNEALVF--DVPPE--N---VDNVSL   84 (134)
T ss_pred             EEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCC---CCCcccceEEE--ECCHH--H---hCCCEE
Confidence            37899999999995    3678999999865322  23455544444   34568766444  45544  2   456779


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        85 ~~~v~d~~~   93 (134)
T cd08403          85 IIAVVDYDR   93 (134)
T ss_pred             EEEEEECCC
Confidence            999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=93.89  E-value=0.26  Score=40.00  Aligned_cols=74  Identities=15%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      +.+|+|.+|.+|+..    .+|-||+..+.........|+-++++   ..+.|+.+-.|.+ +..     +-+.+..|.|
T Consensus        17 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t---~~P~Wne~f~f~~-~~~-----~~l~~~~l~~   87 (125)
T cd08386          17 TLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN---LNPHWNETFLFEG-FPY-----EKLQQRVLYL   87 (125)
T ss_pred             EEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCC---CCCccceeEEEcc-cCH-----HHhCCCEEEE
Confidence            577999999999853    46799999986544445677777766   3456876644431 222     2246678999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||.+..
T Consensus        88 ~v~d~d~   94 (125)
T cd08386          88 QVLDYDR   94 (125)
T ss_pred             EEEeCCC
Confidence            9998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=93.85  E-value=0.29  Score=40.36  Aligned_cols=72  Identities=14%  Similarity=0.229  Sum_probs=50.5

Q ss_pred             EEEEEEeeccCCCcc---cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      ...|+|.+|.+|+..   .+|-||+-.+......  ...|..++++   ..+.|+..  |.+.++.+  .   +++ .|.
T Consensus        13 ~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t---~~P~~nE~--F~f~v~~~--~---~~~-~l~   81 (119)
T cd08685          13 KLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDS---ANPLFHET--FSFDVNER--D---YQK-RLL   81 (119)
T ss_pred             EEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCC---CCCccccE--EEEEcChH--H---hCC-EEE
Confidence            468999999999863   5689999999865443  3357777666   34568766  55566665  3   233 588


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||.+..
T Consensus        82 v~V~~~~~   89 (119)
T cd08685          82 VTVWNKLS   89 (119)
T ss_pred             EEEECCCC
Confidence            99999754

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=93.85  E-value=0.36  Score=39.62  Aligned_cols=66  Identities=23%  Similarity=0.223  Sum_probs=47.5

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|.+|.+|+..    .+|.||...+-+  ...+.|+..+++   ..+.|+.+  |.+.++.         +..|.|+
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~~t---~nP~Wne~--f~~~~~~---------~~~l~i~   65 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKKT---LDPKWNEH--FDLTVGP---------SSIITIQ   65 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEcCC---CCCcccce--EEEEeCC---------CCEEEEE
Confidence            58999999999853    457999999854  335778877766   34568766  5555543         3479999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        66 V~d~~~   71 (123)
T cd08382          66 VFDQKK   71 (123)
T ss_pred             EEECCC
Confidence            998755

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=93.85  E-value=0.25  Score=41.06  Aligned_cols=73  Identities=16%  Similarity=0.109  Sum_probs=50.5

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ++.|+|++|.+|+..    .+|-||+..+......  ...|+.++++   ..+.|+.+-.|  .+..+  .   +++..|
T Consensus        16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t---~nP~w~e~F~f--~v~~~--~---~~~~~l   85 (136)
T cd08404          16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCT---LNPVFNESFVF--DIPSE--E---LEDISV   85 (136)
T ss_pred             eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCC---CCCccCceEEE--ECCHH--H---hCCCEE
Confidence            478899999999853    5689999998754332  2346666665   34568777444  56544  2   366779


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        86 ~~~v~d~d~   94 (136)
T cd08404          86 EFLVLDSDR   94 (136)
T ss_pred             EEEEEECCC
Confidence            999999854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=93.72  E-value=0.33  Score=38.74  Aligned_cols=68  Identities=16%  Similarity=0.215  Sum_probs=47.5

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      ++|+|++|.+|+..    .+|-||.....+  .....|+.++++   ..+.|+.+-.|  .+...       ....|.|+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~~~~---~~P~Wne~f~~--~~~~~-------~~~~l~~~   66 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTIKKT---LNPVWNESFEV--PVPSR-------VRAVLKVE   66 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--CcceeeceecCC---CCCcccccEEE--EeccC-------CCCEEEEE
Confidence            37899999999863    457899998744  335788887765   35568876444  44432       34579999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        67 v~d~~~   72 (115)
T cd04040          67 VYDWDR   72 (115)
T ss_pred             EEeCCC
Confidence            998854

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=93.67  E-value=0.32  Score=40.66  Aligned_cols=73  Identities=12%  Similarity=0.216  Sum_probs=50.6

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      +++|+|++|.+|+..    .+|-||+..+.+...  ....|+.++++   ..+.|+.+-.|  .++.+  -   +++..|
T Consensus        15 ~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t---~nP~wnE~F~f--~i~~~--~---l~~~~l   84 (135)
T cd08410          15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT---IDPFYNESFSF--KVPQE--E---LENVSL   84 (135)
T ss_pred             eEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCC---CCCccceeEEE--eCCHH--H---hCCCEE
Confidence            478999999999853    578999988754321  23556666666   34578887544  45544  2   356689


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        85 ~~~V~d~d~   93 (135)
T cd08410          85 VFTVYGHNV   93 (135)
T ss_pred             EEEEEeCCC
Confidence            999999754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=93.62  E-value=0.46  Score=37.74  Aligned_cols=66  Identities=5%  Similarity=-0.079  Sum_probs=47.1

Q ss_pred             EEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         162 RITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       162 rVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      .|+|.+|.+||..    -+|-||...+-+   ....|..++++   ..+.|+..-.|  .|+..       +...|.|+|
T Consensus         3 ~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~t---~nP~Wne~f~f--~v~~~-------~~~~l~v~v   67 (105)
T cd04050           3 FVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKERT---NNPVWEEGFTF--LVRNP-------ENQELEIEV   67 (105)
T ss_pred             EEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCccccCC---CCCcccceEEE--EeCCC-------CCCEEEEEE
Confidence            6899999999964    456999999976   35667666655   35678877444  45543       123699999


Q ss_pred             eeccc
Q psy7271         238 WCSPL  242 (305)
Q Consensus       238 wG~~~  242 (305)
                      |.+..
T Consensus        68 ~d~~~   72 (105)
T cd04050          68 KDDKT   72 (105)
T ss_pred             EECCC
Confidence            99865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.61  E-value=0.29  Score=40.37  Aligned_cols=72  Identities=17%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             EEEEEeeccCCCcc---cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEee-cCCccccccccCCcEE
Q psy7271         161 FRITVLQAVGISTE---YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSAT-AAHAAPLHPHQSTSQI  234 (305)
Q Consensus       161 FrVtIlqAsGLp~~---ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~V-Tee~~fl~yl~~~~L~  234 (305)
                      .+|+|++|.+|+..   .+|-||+..+.....  ....|..++++   .++.|+.+  |+..+ +.+  .   +++..|.
T Consensus        15 L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~---~nP~wnE~--F~f~~~~~~--~---l~~~~L~   84 (122)
T cd08381          15 LFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKT---RNPTFNEM--LVYDGLPVE--D---LQQRVLQ   84 (122)
T ss_pred             EEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCC---CCCCcccE--EEEecCChH--H---hCCCEEE
Confidence            67899999999963   678999999986543  24567777776   35678866  55555 433  2   5777899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||.+..
T Consensus        85 ~~V~d~d~   92 (122)
T cd08381          85 VSVWSHDS   92 (122)
T ss_pred             EEEEeCCC
Confidence            99998754

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=93.58  E-value=0.41  Score=39.42  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             EEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeec
Q psy7271         161 FRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCS  240 (305)
Q Consensus       161 FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~  240 (305)
                      ..|+|++|.||+...+|.||...+.+   ....|+.++++   .++.|+.+-.|  .+.       .++...|.|+||.+
T Consensus         2 L~V~Vi~a~~L~~~~~Dpyv~v~l~~---~~~kT~v~~~t---~nP~Wne~F~f--~~~-------~~~~~~L~~~v~d~   66 (121)
T cd08378           2 LYVRVVKARGLPANSNDPVVEVKLGN---YKGSTKAIERT---SNPEWNQVFAF--SKD-------RLQGSTLEVSVWDK   66 (121)
T ss_pred             EEEEEEEecCCCcccCCCEEEEEECC---ccccccccCCC---CCCccceEEEE--EcC-------CCcCCEEEEEEEeC
Confidence            47999999999987778999999865   24567777666   34568776444  332       23667899999998


Q ss_pred             cc
Q psy7271         241 PL  242 (305)
Q Consensus       241 ~~  242 (305)
                      ..
T Consensus        67 d~   68 (121)
T cd08378          67 DK   68 (121)
T ss_pred             CC
Confidence            64

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=93.35  E-value=0.38  Score=38.76  Aligned_cols=73  Identities=15%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             EEEEEEeeccCCCcc-----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ...|+|.+|.+|+..     .+|.||+..+.....  ....|+.++++   ..+.|+.+  |+..++++  .   +....
T Consensus        15 ~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~~P~wne~--f~f~i~~~--~---l~~~~   84 (123)
T cd08521          15 SLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNT---TNPVFNET--LKYHISKS--Q---LETRT   84 (123)
T ss_pred             EEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCC---CCCcccce--EEEeCCHH--H---hCCCE
Confidence            467999999999842     457999998875433  23556666655   35568777  44456665  3   35678


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||.+..
T Consensus        85 l~i~v~d~~~   94 (123)
T cd08521          85 LQLSVWHHDR   94 (123)
T ss_pred             EEEEEEeCCC
Confidence            9999998753

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=93.26  E-value=0.29  Score=42.64  Aligned_cols=73  Identities=16%  Similarity=0.153  Sum_probs=50.6

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      ..|+|.+|.||+..    .+|-||+..+....  .....|+.++++   .++.|+..-.|.+ ++.+  -   +.+..|.
T Consensus        29 L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t---~nP~WnE~f~f~~-~~~~--~---l~~~~L~   99 (162)
T cd04020          29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS---VNPVWNHTFVYDG-VSPE--D---LSQACLE   99 (162)
T ss_pred             EEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC---CCCCCCCEEEEec-CCHH--H---hCCCEEE
Confidence            78999999999964    56899999886432  235678877776   3456887644432 2232  1   3566899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus       100 i~V~d~d~  107 (162)
T cd04020         100 LTVWDHDK  107 (162)
T ss_pred             EEEEeCCC
Confidence            99998754

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=93.20  E-value=0.33  Score=40.33  Aligned_cols=73  Identities=15%  Similarity=0.092  Sum_probs=50.4

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ++.|+|.+|.+|+..    .+|.||+.......  .....|+.++++   ..+.|+.+-.|.  ++.+  -   +.+..|
T Consensus        16 ~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t---~~P~wne~F~f~--i~~~--~---~~~~~l   85 (136)
T cd08405          16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRT---LNPVFNESFIFN--IPLE--R---LRETTL   85 (136)
T ss_pred             eEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCC---CCCcccceEEEe--CCHH--H---hCCCEE
Confidence            478999999999852    46799999875432  234567777766   345788875554  4433  2   356789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        86 ~~~v~d~~~   94 (136)
T cd08405          86 IITVMDKDR   94 (136)
T ss_pred             EEEEEECCC
Confidence            999998753

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=92.91  E-value=0.87  Score=36.54  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             EEEEEEeeccCCCc-c----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGIST-E----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      ..+|+|.+|.+|+. .    .+|.||..++... .....|+.++++   ..+.|+..-.|  .+. +       .++.|.
T Consensus         3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~---~~P~Wne~~~~--~v~-~-------~~~~l~   68 (124)
T cd04044           3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDT---SNPVWNETKYI--LVN-S-------LTEPLN   68 (124)
T ss_pred             EEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCC---CCCcceEEEEE--EeC-C-------CCCEEE
Confidence            36799999999994 2    2579999999764 345677777665   35678866444  444 2       245799


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus        69 ~~v~d~~~   76 (124)
T cd04044          69 LTVYDFND   76 (124)
T ss_pred             EEEEecCC
Confidence            99998754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=92.87  E-value=0.5  Score=39.46  Aligned_cols=72  Identities=14%  Similarity=0.089  Sum_probs=49.4

Q ss_pred             EEEEEeeccCCCcc---cCceEEEEEeCC--CCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         161 FRITVLQAVGISTE---YSDIFCQFNFLH--RHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       161 FrVtIlqAsGLp~~---ysdVFCQy~F~~--~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .+|+|++|.+|+..   .+|-||+..+.+  ..+  ..+.|.-.+|+   .++.|+..=.|  .|+.+    +-++...|
T Consensus         2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t---lnPvwNE~f~F--~v~~~----~~~~~~~L   72 (120)
T cd08395           2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN---WSPKYNETFQF--ILGNE----DDPESYEL   72 (120)
T ss_pred             EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCC---CCCccCcEEEE--EeeCc----CCCceeEE
Confidence            57999999999975   789999999975  222  23556555444   35678887444  45433    12577789


Q ss_pred             EEEEeecc
Q psy7271         234 IYQVWCSP  241 (305)
Q Consensus       234 ~fEVwG~~  241 (305)
                      .|.||=+.
T Consensus        73 ~~~V~D~d   80 (120)
T cd08395          73 HICVKDYC   80 (120)
T ss_pred             EEEEEEec
Confidence            99998664

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=92.78  E-value=0.58  Score=37.86  Aligned_cols=67  Identities=16%  Similarity=0.186  Sum_probs=46.4

Q ss_pred             EEEEEeeccCCCcc------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         161 FRITVLQAVGISTE------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       161 FrVtIlqAsGLp~~------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      .+|+|.+|.+|+..      .+|-||...+-   ...+.|+.++++.   .+.|+.+  |.+.+.+       ..+..|.
T Consensus         3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~---~~~~kT~~~~~t~---~P~Wne~--f~~~~~~-------~~~~~l~   67 (128)
T cd04024           3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVG---AQRFKTQTIPNTL---NPKWNYW--CEFPIFS-------AQNQLLK   67 (128)
T ss_pred             EEEEEEEeeCCCcccCCCCCCcCCeEEEEEC---CEEEecceecCCc---CCccCCc--EEEEecC-------CCCCEEE
Confidence            57999999999852      45789998873   2356777777763   4557765  4444543       2456799


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus        68 i~v~d~~~   75 (128)
T cd04024          68 LILWDKDR   75 (128)
T ss_pred             EEEEECCC
Confidence            99998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=92.35  E-value=0.53  Score=38.83  Aligned_cols=72  Identities=14%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~~~L~  234 (305)
                      ...|+|++|.+|++.    .++.|++...+........|...++    ..+.|+.+  |.+. ++++  .   +.+..|.
T Consensus        17 ~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~----~nP~fnE~--F~f~~i~~~--~---l~~~~L~   85 (124)
T cd08389          17 KLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG----PNPVFNET--FTFSRVEPE--E---LNNMALR   85 (124)
T ss_pred             EEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC----CCCcccCE--EEECCCCHH--H---hccCEEE
Confidence            358999999999964    4568998777665544566665443    34568776  5555 6655  3   5788899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||.+..
T Consensus        86 ~~V~~~~~   93 (124)
T cd08389          86 FRLYGVER   93 (124)
T ss_pred             EEEEECCC
Confidence            99999854

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=92.27  E-value=0.48  Score=38.85  Aligned_cols=70  Identities=10%  Similarity=0.039  Sum_probs=47.5

Q ss_pred             EEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|++|.+|+.    ..+|.||...+..+   ...|+-++++   ..+.|+..  |.+.+...    .-+....|.|+
T Consensus         2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~---~~rT~v~~~t---~nP~Wne~--f~f~~~~~----~~~~~~~l~~~   69 (127)
T cd04022           2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQ---KKRTRTKPKD---LNPVWNEK--LVFNVSDP----SRLSNLVLEVY   69 (127)
T ss_pred             eEEEEEEeeCCCCCCCCCCcCcEEEEEECCE---EecceeEcCC---CCCccceE--EEEEccCH----HHccCCeEEEE
Confidence            5799999999984    25679999987653   2456666655   35678765  55555432    11346689999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||.+..
T Consensus        70 V~d~~~   75 (127)
T cd04022          70 VYNDRR   75 (127)
T ss_pred             EeeCCC
Confidence            999753

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=92.18  E-value=0.84  Score=37.05  Aligned_cols=67  Identities=19%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|.+|.+|+..    .+|-||+..+-+   ....|+.++++.   .+.|+.+-.|  .+...       ....|.|+
T Consensus         2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~---~~~kT~v~~~t~---nP~Wne~f~f--~~~~~-------~~~~l~~~   66 (123)
T cd04025           2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKKSC---YPRWNEVFEF--ELMEG-------ADSPLSVE   66 (123)
T ss_pred             EEEEEEEeeCCCCCCCCCCcCceEEEEECC---EEEeceeecCCC---CCccCcEEEE--EcCCC-------CCCEEEEE
Confidence            57999999999853    467999998843   235677777663   4568776444  45443       25679999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        67 v~d~~~   72 (123)
T cd04025          67 VWDWDL   72 (123)
T ss_pred             EEECCC
Confidence            998754

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=91.89  E-value=0.72  Score=37.45  Aligned_cols=74  Identities=16%  Similarity=0.196  Sum_probs=49.1

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      +.+|+|++|.+|+..    -+|.||+..+.+.+  .+.|...++.+  ..+.|+..  |.+.+.+.  .+ --....|.|
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~--~~~T~~~~~~~--~~P~Wne~--f~f~v~~~--~~-~~~~~~l~~   71 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH--KQSTPVDRDGG--TNPTWNET--LRFPLDER--LL-QQGRLALTI   71 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCc--ccccccccCCC--CCCCCCCE--EEEEcChH--hc-ccCccEEEE
Confidence            468999999999953    24599999997622  35665554432  35568765  55556555  22 123567999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        72 ~v~d~~~   78 (125)
T cd04051          72 EVYCERP   78 (125)
T ss_pred             EEEECCC
Confidence            9998754

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=91.61  E-value=0.99  Score=39.19  Aligned_cols=70  Identities=11%  Similarity=0.072  Sum_probs=49.1

Q ss_pred             EEEEEEeeccCCCcc------------------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCC
Q psy7271         160 QFRITVLQAVGISTE------------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAH  221 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~------------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee  221 (305)
                      ++.|+|.+|.+||..                  .+|-||+..|.+..   ..|..++|+   .++.|+.+-.|.+.+ .+
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~---~kT~v~~~t---~nPvWNE~f~f~v~~-p~   73 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQK---VKTSVKKNS---YNPEWNEQIVFPEMF-PP   73 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEe---eecceEcCC---CCCCcceEEEEEeeC-CC
Confidence            368999999999962                  46899999987643   467777776   356788775554332 22


Q ss_pred             ccccccccCCcEEEEEeecccc
Q psy7271         222 AAPLHPHQSTSQIYQVWCSPLA  243 (305)
Q Consensus       222 ~~fl~yl~~~~L~fEVwG~~~~  243 (305)
                             ..+.|.|+||-+...
T Consensus        74 -------~~~~l~~~v~D~d~~   88 (151)
T cd04018          74 -------LCERIKIQIRDWDRV   88 (151)
T ss_pred             -------cCCEEEEEEEECCCC
Confidence                   134799999998653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=91.49  E-value=1.2  Score=32.87  Aligned_cols=70  Identities=14%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      ++|+|.+|.+|+..    ..+.||.+.+....-....|+-+.++.   .+.|+..  |.+.++..  .     ...|.|+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~---~P~w~e~--~~~~~~~~--~-----~~~l~i~   69 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTL---NPVWNET--FEFEVPPP--E-----LAELEIE   69 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCC---CCcccce--EEEEecCc--c-----cCEEEEE
Confidence            67899999999865    345999999976421235566555542   4578775  55556554  1     6789999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||.+..
T Consensus        70 v~~~~~   75 (101)
T smart00239       70 VYDKDR   75 (101)
T ss_pred             EEecCC
Confidence            999864

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=91.26  E-value=0.98  Score=38.99  Aligned_cols=79  Identities=10%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             EEEEEeeccCCCcc--cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCC------ccccccccC
Q psy7271         161 FRITVLQAVGISTE--YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAH------AAPLHPHQS  230 (305)
Q Consensus       161 FrVtIlqAsGLp~~--ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee------~~fl~yl~~  230 (305)
                      .+|+|.+|.+|+..  .+|-||...+.+...  ....|.-++++   ..+.|+.+-.|.+.....      -+..+-++.
T Consensus         2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t---~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKKQDTKRTKVKKKT---NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             EEEEEEeCcCCCCCCCCCCceEEEEEeCCcccCcccCCccEeCC---CCCccceEEEEEEecccccccccccCCcccccE
Confidence            57999999999874  678999999987432  24556666666   356788776666531110      001123455


Q ss_pred             CcEEEEEeeccc
Q psy7271         231 TSQIYQVWCSPL  242 (305)
Q Consensus       231 ~~L~fEVwG~~~  242 (305)
                      ..|.|+||.+..
T Consensus        79 ~~L~i~V~d~~~   90 (148)
T cd04010          79 LELRVDLWHASM   90 (148)
T ss_pred             EEEEEEEEcCCC
Confidence            679999997754

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=91.20  E-value=1.3  Score=36.47  Aligned_cols=67  Identities=15%  Similarity=0.200  Sum_probs=47.5

Q ss_pred             EEEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         161 FRITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       161 FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      .+|+|.+|.||+..     .+|-||+..+.+.  ....|...++|.   .+.|+.+  |.+.|++.  .      ..|.|
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~--~~~kT~v~~kt~---~P~WnE~--F~f~v~~~--~------~~l~~   66 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE--EVFRTKTVEKSL---CPFFGED--FYFEIPRT--F------RHLSF   66 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCc--cEEEeeEEECCC---CCccCCe--EEEEcCCC--C------CEEEE
Confidence            36899999999974     4689999988432  346677777763   4458777  55556654  1      36999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        67 ~v~d~~~   73 (121)
T cd08401          67 YIYDRDV   73 (121)
T ss_pred             EEEECCC
Confidence            9998764

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=91.18  E-value=1.2  Score=36.68  Aligned_cols=67  Identities=19%  Similarity=0.186  Sum_probs=48.5

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|++|.+|+..    .+|-||...+-++   .+.|+.++++   ..+.|+....|.+  ..        .+..|.|
T Consensus         4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~---~~kT~v~~~t---~nP~Wne~f~f~~--~~--------~~~~l~i   67 (126)
T cd04046           4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEGE---SVRSPVQKDT---LSPEFDTQAIFYR--KK--------PRSPIKI   67 (126)
T ss_pred             EEEEEEEeCcCCCCCCCCCCcCccEEEEECCE---EEEeCccCCC---CCCcccceEEEEe--cC--------CCCEEEE
Confidence            468999999999863    5679999987653   4678877766   3567888765543  22        1457999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-++.
T Consensus        68 ~V~d~~~   74 (126)
T cd04046          68 QVWNSNL   74 (126)
T ss_pred             EEEECCC
Confidence            9998754

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=91.15  E-value=1.1  Score=36.79  Aligned_cols=73  Identities=12%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             eEEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         159 LQFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      -.++|+|.+|.+|+..    .+|.||...+.+..  .....|+-++++   ..+.|+.+-.|  .+...  .    ....
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~---~~P~wne~f~~--~~~~~--~----~~~~   81 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT---LNPVWNETFTF--DLKPA--D----KDRR   81 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCC---CCCCccceEEE--eCCch--h----cCCE
Confidence            3478999999999853    57799999886432  234667666665   35568776444  45443  1    3457


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||.+..
T Consensus        82 l~v~v~d~~~   91 (131)
T cd04026          82 LSIEVWDWDR   91 (131)
T ss_pred             EEEEEEECCC
Confidence            9999998754

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=90.93  E-value=1.2  Score=37.47  Aligned_cols=73  Identities=11%  Similarity=0.076  Sum_probs=52.2

Q ss_pred             EEEEEEeeccCCCcc-cCceEEEEEeCCCCc-cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHD-EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~e-e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      ...|+|++|.+|+.. .||-|++-..+.... .-..|.-.++|   .++.|+-+  |+..|+.+  .   |++..|.|.|
T Consensus        15 ~L~V~vikA~~L~~~g~sDPYVKv~L~~~~k~~k~kT~v~rkt---lnPvfnE~--f~F~v~~~--~---l~~~tL~~~V   84 (118)
T cd08677          15 ELHVNILEAENISVDAGCECYISGCVSVSEGQKEAQTALKKLA---LHTQWEEE--LVFPLPEE--E---SLDGTLTLTL   84 (118)
T ss_pred             EEEEEEEEecCCCCCCCCCeEEEEEEcCCcCccEEEcceecCC---CCCccccE--EEEeCCHH--H---hCCcEEEEEE
Confidence            457899999999854 678999999875322 24556555555   34568777  44457766  4   6899999999


Q ss_pred             eeccc
Q psy7271         238 WCSPL  242 (305)
Q Consensus       238 wG~~~  242 (305)
                      |-+.+
T Consensus        85 ~d~Dr   89 (118)
T cd08677          85 RCCDR   89 (118)
T ss_pred             EeCCC
Confidence            98754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=90.65  E-value=1.7  Score=35.55  Aligned_cols=69  Identities=13%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCc----cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHD----EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e----e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      .+|+|..|.+|+..    .+|-||+....+...    ....|+.++++   ..+.|+..  |.+.+...        ...
T Consensus         2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t---~nP~Wne~--f~f~~~~~--------~~~   68 (133)
T cd04033           2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT---LNPKWNEE--FFFRVNPR--------EHR   68 (133)
T ss_pred             EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC---CCCcEeeE--EEEEEcCC--------CCE
Confidence            57999999999864    467999999876521    13456666665   34568765  54555443        235


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||.+..
T Consensus        69 l~~~v~d~~~   78 (133)
T cd04033          69 LLFEVFDENR   78 (133)
T ss_pred             EEEEEEECCC
Confidence            8999998754

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=90.07  E-value=1.7  Score=35.65  Aligned_cols=68  Identities=15%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             EEEEeeccCCCcc--cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271         162 RITVLQAVGISTE--YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC  239 (305)
Q Consensus       162 rVtIlqAsGLp~~--ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG  239 (305)
                      .|+|++|.||+..  -+|.||...+-.. ...+.|+.++++   ..+.|+..-.|  .++++        +..|.|+||-
T Consensus         2 ~v~v~~A~~L~~~~g~~dpyv~v~~~~~-~~~~kT~v~~~t---~nP~Wne~f~f--~~~~~--------~~~l~~~v~d   67 (126)
T cd08678           2 LVKNIKANGLSEAAGSSNPYCVLEMDEP-PQKYQSSTQKNT---SNPFWDEHFLF--ELSPN--------SKELLFEVYD   67 (126)
T ss_pred             EEEEEEecCCCCCCCCcCCEEEEEECCC-CcEEEeEEEecC---CCCccCceEEE--EeCCC--------CCEEEEEEEE
Confidence            4899999999873  3469999987432 234678888777   34578877544  45432        4569999998


Q ss_pred             cccc
Q psy7271         240 SPLA  243 (305)
Q Consensus       240 ~~~~  243 (305)
                      +...
T Consensus        68 ~~~~   71 (126)
T cd08678          68 NGKK   71 (126)
T ss_pred             CCCC
Confidence            7553

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=89.98  E-value=1.5  Score=36.87  Aligned_cols=65  Identities=11%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             EEEEeeccCCCcccCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271         162 RITVLQAVGISTEYSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC  239 (305)
Q Consensus       162 rVtIlqAsGLp~~ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG  239 (305)
                      .|+|.+|.||+ ..+|-||.+.+....  ...+.|..+++|.   .+.|+..-.|  ++..         +..|.|.||=
T Consensus         2 ~V~V~~A~~L~-~~sDPYV~l~v~~~~~~~~~~KTk~i~~Tl---nPvWnE~F~i--~l~~---------s~~L~~~v~d   66 (118)
T cd08686           2 NVIVHSAQGFK-QSANLYCTLEVDSFGYFVKKAKTRVCRDTT---EPNWNEEFEI--ELEG---------SQTLRILCYE   66 (118)
T ss_pred             EEEEEeCCCCC-CCCCCEEEEEEcCccccceeeeeeeecCCC---CCccceEEEE--EeCC---------CCEEEEEEEE
Confidence            68999999997 469999999886532  2457788887773   4678776444  4432         2368899997


Q ss_pred             cc
Q psy7271         240 SP  241 (305)
Q Consensus       240 ~~  241 (305)
                      +.
T Consensus        67 ~~   68 (118)
T cd08686          67 KC   68 (118)
T ss_pred             cc
Confidence            63

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=89.72  E-value=0.58  Score=37.96  Aligned_cols=42  Identities=26%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             eEEEEeeeEeecccccccCcceeeeEEcCCC-CeeEEEEEEEE
Q psy7271          37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKG-DVKGHLKIAVQ   78 (305)
Q Consensus        37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~G-ev~G~L~V~V~   78 (305)
                      ..+||.+.+-|..|...-+.+..+++.+.+| +..|.|+|.+.
T Consensus        76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~  118 (121)
T cd04042          76 DDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVT  118 (121)
T ss_pred             CcceEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEE
Confidence            3579999999999999999999999998886 67899999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=89.62  E-value=2.2  Score=34.11  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=46.6

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      +++|+|.+|.+|+..    .+|-||...+.+.   ...|+.++++   ..+.|+.+  |.+.+.+.        ...|.|
T Consensus         2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~---~~~T~~~~~t---~nP~W~e~--f~~~~~~~--------~~~l~~   65 (119)
T cd08377           2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNA---RLQTHTIYKT---LNPEWNKI--FTFPIKDI--------HDVLEV   65 (119)
T ss_pred             EEEEEEEeeeCCCCCCCCCCCCcEEEEEECCE---eeecceecCC---cCCccCcE--EEEEecCc--------CCEEEE
Confidence            467999999999853    4678999887543   3567777776   34568776  44445431        357999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        66 ~v~d~~~   72 (119)
T cd08377          66 TVYDEDK   72 (119)
T ss_pred             EEEECCC
Confidence            9998754

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=89.61  E-value=1.8  Score=35.05  Aligned_cols=68  Identities=9%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|.+|.+|+..    .+|-||+..+-+.  ..+.|+.++++   ..+.|++.-.|  .+. +      + +..|.|+
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~--~~~kT~~~~~t---~nP~Wne~f~f--~v~-~------~-~~~l~~~   66 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGK--TVYKSKTIYKN---LNPVWDEKFTL--PIE-D------V-TQPLYIK   66 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCE--EEEEeeeccCC---CCCccceeEEE--Eec-C------C-CCeEEEE
Confidence            57999999999852    5679999987542  35677777766   35678866444  442 2      1 3579999


Q ss_pred             Eeecccc
Q psy7271         237 VWCSPLA  243 (305)
Q Consensus       237 VwG~~~~  243 (305)
                      ||-+...
T Consensus        67 v~D~d~~   73 (121)
T cd04042          67 VFDYDRG   73 (121)
T ss_pred             EEeCCCC
Confidence            9987543

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=89.17  E-value=2  Score=37.22  Aligned_cols=68  Identities=13%  Similarity=0.191  Sum_probs=47.5

Q ss_pred             EEEEEEeeccCCCcc-----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ...|+|++|.+|++.     .+|-|++..++.....  ..-|..++++   .++.|+..=.|.|.          +.+..
T Consensus        30 ~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt---lnPvfNE~F~f~v~----------l~~~~   96 (146)
T cd04028          30 QLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT---LDPLYQQQLVFDVS----------PTGKT   96 (146)
T ss_pred             EEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC---CCCccCCeEEEEEc----------CCCCE
Confidence            478999999999852     5789999999765432  3456666666   34568776555433          35667


Q ss_pred             EEEEEeec
Q psy7271         233 QIYQVWCS  240 (305)
Q Consensus       233 L~fEVwG~  240 (305)
                      |.|+||.+
T Consensus        97 L~v~V~~d  104 (146)
T cd04028          97 LQVIVWGD  104 (146)
T ss_pred             EEEEEEeC
Confidence            99999963

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=88.88  E-value=2.7  Score=36.55  Aligned_cols=73  Identities=15%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CeeEEEEEEeeccCCCc----ccCceEEEEEeCCCC--------------------------ccceeeCcccCCCCCCCe
Q psy7271         157 TELQFRITVLQAVGIST----EYSDIFCQFNFLHRH--------------------------DEAFSTEPVKNTGKGTPL  206 (305)
Q Consensus       157 ~~~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~--------------------------ee~fsTePvknt~~~~~~  206 (305)
                      ..+..+|+|.+|.||+.    ..+|-||+..+....                          .....|+.++++   ..+
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t---lnP  102 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT---LNP  102 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC---CCC
Confidence            46789999999999975    367899999886421                          123556665555   345


Q ss_pred             eeeEEEEEEEeecCCccccccccCCcEEEEEeecc
Q psy7271         207 GFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSP  241 (305)
Q Consensus       207 ~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~~  241 (305)
                      .|+.+  |.+.+.+       +.+..|.|+||-+.
T Consensus       103 ~WnE~--F~f~v~~-------~~~~~L~i~V~D~d  128 (153)
T cd08676         103 VWNET--FRFEVED-------VSNDQLHLDIWDHD  128 (153)
T ss_pred             ccccE--EEEEecc-------CCCCEEEEEEEecC
Confidence            67655  4444432       24568999999886

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=88.56  E-value=4.2  Score=34.96  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=47.0

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|.+|.+|++.    .+|-||+..+.++   ...|...++.+  ..+.|+..  |.+.|++.  .     ...|.|+
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~---~~kTk~~~~~t--~nP~WNE~--F~f~v~~~--~-----~~~l~v~   67 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQ---VLRTRPSQTRN--GNPSWNEE--LMFVAAEP--F-----EDHLILS   67 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCE---EeeeEeccCCC--CCCcccCc--EEEEecCc--c-----CCeEEEE
Confidence            57999999999753    5679999999763   34566555432  35578765  55556654  2     2479999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        68 V~d~~~   73 (150)
T cd04019          68 VEDRVG   73 (150)
T ss_pred             EEEecC
Confidence            998754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd00030 C2 C2 domain

Probab=88.08  E-value=2.5  Score=30.66  Aligned_cols=67  Identities=22%  Similarity=0.291  Sum_probs=44.3

Q ss_pred             EEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         162 RITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       162 rVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      .|+|.+|.+|+.    ...+.||...+.+  .....|+..+++   ..+.|+..  |.+++...       ....|.|+|
T Consensus         2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~~---~~P~w~~~--~~~~~~~~-------~~~~l~i~v   67 (102)
T cd00030           2 RVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKNT---LNPVWNET--FEFPVLDP-------ESDTLTVEV   67 (102)
T ss_pred             EEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCCC---CCCcccce--EEEEccCC-------CCCEEEEEE
Confidence            689999999986    3556999999987  223556555544   23457555  44444432       455689999


Q ss_pred             eeccc
Q psy7271         238 WCSPL  242 (305)
Q Consensus       238 wG~~~  242 (305)
                      |-+..
T Consensus        68 ~~~~~   72 (102)
T cd00030          68 WDKDR   72 (102)
T ss_pred             EecCC
Confidence            98754

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=87.86  E-value=3.7  Score=33.72  Aligned_cols=67  Identities=16%  Similarity=0.134  Sum_probs=45.4

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|+.|.||+..    .+|-||...+-+   ....|+.++++.   .+.|+.+-.|.  +...        ...|.|
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~v~~t~---~P~Wne~f~f~--~~~~--------~~~l~i   65 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK---TKKRTKTIPQNL---NPVWNEKFHFE--CHNS--------SDRIKV   65 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC---EeeecceecCCC---CCccceEEEEE--ecCC--------CCEEEE
Confidence            468999999999853    457899998732   245678887763   45677654443  3221        236999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        66 ~v~d~d~   72 (127)
T cd04027          66 RVWDEDD   72 (127)
T ss_pred             EEEECCC
Confidence            9998754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=87.73  E-value=3.8  Score=35.06  Aligned_cols=80  Identities=14%  Similarity=0.171  Sum_probs=52.2

Q ss_pred             EEEEEeeccCCCcc--------cCceEEEEEeCCCCccceeeCcccCCCCC-CCeeeeEEEEEEEeecCCcccc------
Q psy7271         161 FRITVLQAVGISTE--------YSDIFCQFNFLHRHDEAFSTEPVKNTGKG-TPLGFYHIQNLTSATAAHAAPL------  225 (305)
Q Consensus       161 FrVtIlqAsGLp~~--------ysdVFCQy~F~~~~ee~fsTePvknt~~~-~~~~F~hvq~~~V~VTee~~fl------  225 (305)
                      .||.|.+|.+++..        .+|+|++=-.....++.-.|.--.++-.| +.+++..+-.|...-++.  .+      
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~--~~~~~~~~   79 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEK--KIVVIKKE   79 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccc--eeEEEeec
Confidence            68999999997731        37899998777654445666666666433 344444443343323332  22      


Q ss_pred             --------ccccCCcEEEEEeeccc
Q psy7271         226 --------HPHQSTSQIYQVWCSPL  242 (305)
Q Consensus       226 --------~yl~~~~L~fEVwG~~~  242 (305)
                              +++....|.++||=...
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~  104 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDK  104 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcc
Confidence                    67889999999998755

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=87.42  E-value=2.8  Score=33.29  Aligned_cols=68  Identities=12%  Similarity=0.098  Sum_probs=46.7

Q ss_pred             EEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271         161 FRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC  239 (305)
Q Consensus       161 FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG  239 (305)
                      .+|+|.+|.|||.. .+|.||...+..  ...+.|..+++    ..+.|++.  |++.+..+  .   +....|.|.||.
T Consensus         2 L~v~vi~a~~l~~~~~~dpyv~v~~~~--~~~~kT~~~~~----~~P~Wne~--f~f~v~~~--~---~~~~~l~i~v~d   68 (117)
T cd08383           2 LRLRILEAKNLPSKGTRDPYCTVSLDQ--VEVARTKTVEK----LNPFWGEE--FVFDDPPP--D---VTFFTLSFYNKD   68 (117)
T ss_pred             eEEEEEEecCCCcCCCCCceEEEEECC--EEeEecceEEC----CCCcccce--EEEecCCc--c---ccEEEEEEEEEe
Confidence            46899999999985 567999999865  22456665544    24568876  44455554  2   344568899998


Q ss_pred             cc
Q psy7271         240 SP  241 (305)
Q Consensus       240 ~~  241 (305)
                      +.
T Consensus        69 ~~   70 (117)
T cd08383          69 KR   70 (117)
T ss_pred             cc
Confidence            75

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=87.31  E-value=3  Score=35.84  Aligned_cols=99  Identities=8%  Similarity=0.161  Sum_probs=60.0

Q ss_pred             EEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         161 FRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       161 FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      ..|+|++|.+|++.    ..|.|++-..+.....  -..|.-.++|.  .++.|+..-.|  .|+.+  .    .+-.|+
T Consensus        16 LtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~--~~P~fNEsF~F--dv~~~--~----~~v~l~   85 (135)
T cd08692          16 IQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSN--GQVKWGETMIF--PVTQQ--E----HGIQFL   85 (135)
T ss_pred             EEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCC--CCceecceEEE--eCCch--h----heeEEE
Confidence            67899999999873    2356999998865442  34466556663  23458777444  45555  2    246799


Q ss_pred             EEEeeccc---cccccccc-cccc-cccccccccccccCc
Q psy7271         235 YQVWCSPL---ALYITSVC-QPLM-VNMSRLWWSTVMNSR  269 (305)
Q Consensus       235 fEVwG~~~---~~~~~~~~-~~~~-~~~~r~~~~~~~~~~  269 (305)
                      ++||.+..   ..++-++. -+-. ....+++|.+.|..|
T Consensus        86 v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~p  125 (135)
T cd08692          86 IKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANP  125 (135)
T ss_pred             EEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCC
Confidence            99998854   22222222 1111 123468888877753

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=87.30  E-value=3.3  Score=34.08  Aligned_cols=68  Identities=9%  Similarity=0.098  Sum_probs=44.9

Q ss_pred             EEEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEe
Q psy7271         160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVW  238 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVw  238 (305)
                      ..+|+|.+|.|||.. .+|-||...+-+.  ....|.. +++   ..+.|+..  |.+.+...  .+     ..|.|+||
T Consensus         5 ~L~V~Vi~A~~L~~~~~~DPYv~v~l~~~--~~~kT~v-~~~---~nP~WnE~--f~f~~~~~--~~-----~~l~v~v~   69 (126)
T cd08400           5 SLQLNVLEAHKLPVKHVPHPYCVISLNEV--KVARTKV-REG---PNPVWSEE--FVFDDLPP--DV-----NSFTISLS   69 (126)
T ss_pred             EEEEEEEEeeCCCCCCCCCeeEEEEECCE--eEEEeec-CCC---CCCccCCE--EEEecCCC--Cc-----CEEEEEEE
Confidence            478999999999976 6789999999542  2344553 333   34568776  44445444  22     25788998


Q ss_pred             eccc
Q psy7271         239 CSPL  242 (305)
Q Consensus       239 G~~~  242 (305)
                      -+..
T Consensus        70 d~~~   73 (126)
T cd08400          70 NKAK   73 (126)
T ss_pred             ECCC
Confidence            8643

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=86.57  E-value=3.4  Score=34.74  Aligned_cols=78  Identities=12%  Similarity=0.140  Sum_probs=49.1

Q ss_pred             EEEEeeccCCCcc---cCceEEEEEeCCCC-ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCc------cccccccCC
Q psy7271         162 RITVLQAVGISTE---YSDIFCQFNFLHRH-DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHA------APLHPHQST  231 (305)
Q Consensus       162 rVtIlqAsGLp~~---ysdVFCQy~F~~~~-ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~------~fl~yl~~~  231 (305)
                      +|+|.+|.+|+..   .+|.|+...+.... .....|+.++++.   .+.|+..-.|.+.-..+-      +-.+-+...
T Consensus         2 ~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~---nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           2 SVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTN---NPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             EEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCC---CCCcceEEEEEcccccccccccccccccccccc
Confidence            6899999999854   56799999887421 2345677777652   456777655543221100      001235788


Q ss_pred             cEEEEEeeccc
Q psy7271         232 SQIYQVWCSPL  242 (305)
Q Consensus       232 ~L~fEVwG~~~  242 (305)
                      .|.|+||-...
T Consensus        79 ~l~i~V~d~~~   89 (137)
T cd08675          79 ELRVELWHASM   89 (137)
T ss_pred             EEEEEEEcCCc
Confidence            99999998643

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=86.46  E-value=4.1  Score=32.77  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             eEEEEEEeeccCCCcc------cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCcccccccc
Q psy7271         159 LQFRITVLQAVGISTE------YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQ  229 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~------ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~  229 (305)
                      +..+|+|.+|.+|+..      .+|.||...+.....   ....|...++++.  .+.|+.+-.|.+.  ..       +
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~--~P~w~e~f~f~~~--~~-------~   70 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGF--NPVWNETFEFDVT--VP-------E   70 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCc--CCccCCcEEEEEe--CC-------C
Confidence            5789999999999852      346999999876432   3466665555432  4568777555544  22       1


Q ss_pred             CCcEEEEEeeccc
Q psy7271         230 STSQIYQVWCSPL  242 (305)
Q Consensus       230 ~~~L~fEVwG~~~  242 (305)
                      ...|.|+||-+..
T Consensus        71 ~~~l~~~V~d~~~   83 (128)
T cd00275          71 LAFLRFVVYDEDS   83 (128)
T ss_pred             eEEEEEEEEeCCC
Confidence            2358899998764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=85.76  E-value=5.5  Score=33.17  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=46.6

Q ss_pred             EEEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         160 QFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      +.+|+|++|.+++..   -+|-||..++-+   ..+.|...++.+  .++.|+.+  |.+.|.+.  .      ..|.|+
T Consensus         3 ~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~---~~~kT~v~~~~~--~nP~WNe~--F~f~v~~~--~------~~l~~~   67 (121)
T cd04016           3 RLSITVVQAKLVKNYGLTRMDPYCRIRVGH---AVYETPTAYNGA--KNPRWNKT--IQCTLPEG--V------DSIYIE   67 (121)
T ss_pred             EEEEEEEEccCCCcCCCCCCCceEEEEECC---EEEEeEEccCCC--CCCccCeE--EEEEecCC--C------cEEEEE
Confidence            568999999987642   257999999844   245676665543  35578866  55556554  1      249999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        68 V~d~d~   73 (121)
T cd04016          68 IFDERA   73 (121)
T ss_pred             EEeCCC
Confidence            999764

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=85.03  E-value=1.2  Score=38.58  Aligned_cols=75  Identities=19%  Similarity=0.318  Sum_probs=52.0

Q ss_pred             EEEEeeccCCCc------------ccC-----ceEEEEE--eCCCCccceeeCcccCCCCCCCeeeeEEEEEEEee-c--
Q psy7271         162 RITVLQAVGIST------------EYS-----DIFCQFN--FLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSAT-A--  219 (305)
Q Consensus       162 rVtIlqAsGLp~------------~ys-----dVFCQy~--F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~V-T--  219 (305)
                      .|.|..|+||..            +|+     +.||..+  |+.+.+ ...|.++.++   --+.|+|.-.|.+++ .  
T Consensus         2 sv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e-~r~TrtVArS---FcPeF~Hh~Efpc~lv~~~   77 (143)
T cd08683           2 SVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKE-LRRTRTVARS---FCPEFNHHVEFPCNLVVQR   77 (143)
T ss_pred             eEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCc-eeeccchhhh---cCCCccceEEEecccEEEc
Confidence            366778888752            233     4678777  887666 7888888766   345899998888762 1  


Q ss_pred             ---CCccccccccCCcEEEEEeec
Q psy7271         220 ---AHAAPLHPHQSTSQIYQVWCS  240 (305)
Q Consensus       220 ---ee~~fl~yl~~~~L~fEVwG~  240 (305)
                         +..-.-+-|++.-++||||=.
T Consensus        78 ~~Ge~~sLAElLe~~eiil~vwHr  101 (143)
T cd08683          78 NSGEAISLAELLESAEIILEVWHR  101 (143)
T ss_pred             CCCccccHHHHhhcceEEeeeeec
Confidence               211134668999999999954

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=84.82  E-value=5.6  Score=34.11  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=46.8

Q ss_pred             EEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         161 FRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       161 FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      .+|+|++|.+|+..   -+|-||..++-++   ...|+.++++   .++.|+..-.|.  +++.        ...|.|+|
T Consensus         4 L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~---~~kT~vvk~t---~nP~WnE~f~f~--i~~~--------~~~l~~~V   67 (145)
T cd04038           4 LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQ---KVKTRVIKKN---LNPVWNEELTLS--VPNP--------MAPLKLEV   67 (145)
T ss_pred             EEEEEEeeECCCCCCCCCcCcEEEEEECCE---EEEeeeEcCC---CCCeecccEEEE--ecCC--------CCEEEEEE
Confidence            68999999999742   4579999988542   4567777765   356788764444  4432        45799999


Q ss_pred             eeccc
Q psy7271         238 WCSPL  242 (305)
Q Consensus       238 wG~~~  242 (305)
                      |-+..
T Consensus        68 ~D~d~   72 (145)
T cd04038          68 FDKDT   72 (145)
T ss_pred             EECCC
Confidence            98864

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=83.96  E-value=5.7  Score=33.78  Aligned_cols=69  Identities=16%  Similarity=0.078  Sum_probs=46.5

Q ss_pred             eEEEEEEeeccCCCcc---cCceEEEEEeCCCC----------ccceeeCcccCCCCCCCeee-eEEEEEEEeecCCccc
Q psy7271         159 LQFRITVLQAVGISTE---YSDIFCQFNFLHRH----------DEAFSTEPVKNTGKGTPLGF-YHIQNLTSATAAHAAP  224 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~----------ee~fsTePvknt~~~~~~~F-~hvq~~~V~VTee~~f  224 (305)
                      +.|.|++.+|.+|+..   -+|-||+.......          .....|+.++++-   ++.| +..=.|.  +..    
T Consensus         1 ~~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tl---nP~W~nE~f~f~--v~~----   71 (137)
T cd08691           1 LSFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTI---NPVWHREQFVFV--GLP----   71 (137)
T ss_pred             CEEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCC---CCceEceEEEEE--cCC----
Confidence            4689999999999864   25688988876433          2356777777763   4567 5554443  322    


Q ss_pred             cccccCCcEEEEEeecc
Q psy7271         225 LHPHQSTSQIYQVWCSP  241 (305)
Q Consensus       225 l~yl~~~~L~fEVwG~~  241 (305)
                           ++.|.|+||-+.
T Consensus        72 -----~~~L~v~V~D~~   83 (137)
T cd08691          72 -----TDVLEIEVKDKF   83 (137)
T ss_pred             -----CCEEEEEEEecC
Confidence                 236999999853

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=83.12  E-value=7.3  Score=32.00  Aligned_cols=67  Identities=19%  Similarity=0.193  Sum_probs=44.9

Q ss_pred             EEEEEEeeccCCCccc---CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         160 QFRITVLQAVGISTEY---SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~y---sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      ..+|+|..|..++...   +|-||+..+-+.  ....|+.++++   ..+.|+.+-.|.  +.+         ...|.|+
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~t---~~P~Wne~f~~~--~~~---------~~~l~~~   66 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKKT---SNPKWNEHFTVL--VTP---------QSTLEFK   66 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECCc--ccEEeeeeCCC---CCCccccEEEEE--eCC---------CCEEEEE
Confidence            4678999998555443   568999988654  34667766665   345687764444  433         2469999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        67 V~d~~~   72 (125)
T cd04021          67 VWSHHT   72 (125)
T ss_pred             EEeCCC
Confidence            999864

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=80.91  E-value=7.4  Score=31.68  Aligned_cols=65  Identities=14%  Similarity=0.016  Sum_probs=45.4

Q ss_pred             EeeccCCCcc--cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEeeccc
Q psy7271         165 VLQAVGISTE--YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWCSPL  242 (305)
Q Consensus       165 IlqAsGLp~~--ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG~~~  242 (305)
                      |.+|.+|+..  .+|.||+..+-..   ...|+.++++   ..+.|+.+  |.+.+...  +   .....|.|+||-+..
T Consensus         2 vi~a~~L~~~~g~~Dpyv~v~~~~~---~~kT~v~~~~---~nP~Wne~--f~f~~~~~--~---~~~~~l~~~v~d~~~   68 (127)
T cd08373           2 VVSLKNLPGLKGKGDRIAKVTFRGV---KKKTRVLENE---LNPVWNET--FEWPLAGS--P---DPDESLEIVVKDYEK   68 (127)
T ss_pred             eEEeeCCcccCCCCCCEEEEEECCE---eeecceeCCC---cCCcccce--EEEEeCCC--c---CCCCEEEEEEEECCC
Confidence            5677777763  3568999988542   3567877776   35678866  55566554  2   467789999999854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=80.40  E-value=9.3  Score=30.12  Aligned_cols=68  Identities=16%  Similarity=0.079  Sum_probs=44.5

Q ss_pred             EeeccCCCcc----cCceEEEEEeCCCC---ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCcccccccc-CCcEEEE
Q psy7271         165 VLQAVGISTE----YSDIFCQFNFLHRH---DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQ-STSQIYQ  236 (305)
Q Consensus       165 IlqAsGLp~~----ysdVFCQy~F~~~~---ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~-~~~L~fE  236 (305)
                      +.+|.+|+..    .+|-||+..+....   .....|+.++++.   .+.|+   .|.+++.+    +..-. ...|.||
T Consensus         6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~---nP~Wn---~f~~~~~~----l~~~~~~~~l~~~   75 (110)
T cd04047           6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTL---NPVWK---PFTIPLQK----LCNGDYDRPIKIE   75 (110)
T ss_pred             EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCC---CCceE---EEEEEHHH----hcCCCcCCEEEEE
Confidence            4578888743    46799999887653   2347788888873   45688   36655422    22111 4689999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        76 V~d~d~   81 (110)
T cd04047          76 VYDYDS   81 (110)
T ss_pred             EEEeCC
Confidence            998864

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=80.11  E-value=13  Score=30.07  Aligned_cols=72  Identities=10%  Similarity=0.095  Sum_probs=45.9

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ...|+|.+|.+|+..    -+|.||...+.+.   ...|+..++.  +..+.|+..-.|  .+...  ..  .....|.|
T Consensus         2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~~--t~nP~Wne~f~f--~v~~~--~~--~~~~~l~v   70 (124)
T cd04049           2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQ---ERKSKVAKGD--GRNPEWNEKFKF--TVEYP--GW--GGDTKLIL   70 (124)
T ss_pred             eEEEEEEecCCCCCCCCCCCcCceEEEEECCE---eeeeeEcCCC--CCCCcccceEEE--EecCc--cc--CCCCEEEE
Confidence            357999999999853    2458999987542   2345555432  235568777444  45444  21  34568999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        71 ~V~d~~~   77 (124)
T cd04049          71 RIMDKDN   77 (124)
T ss_pred             EEEECcc
Confidence            9998754

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

---

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	97.11
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	96.97
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	96.64
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	96.56
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	96.54
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	96.41
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	96.34
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	96.28
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	96.22
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	96.21
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	96.2
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	96.18
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.18
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	96.15
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	96.14
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	95.84
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	95.83
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	95.82
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	95.82
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	95.81
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	95.71
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	95.66
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	95.6
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	95.54
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	95.29
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	95.01
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	94.92
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	94.81
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	94.56
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	94.45
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	94.39
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	94.36
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	94.36
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	94.21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	94.01
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	92.42
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	91.88
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	91.12
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	90.47
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	87.36
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	82.28
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	81.42

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=97.11  E-value=0.012  Score=52.77  Aligned_cols=73  Identities=14%  Similarity=0.129  Sum_probs=52.9

Q ss_pred             EEEEEEeeccCCCc----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGIST----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|.+|.+|+.    ..+|.||+..+.....  ....|+.++++.   ++.|+..  |.+.|+.+  .   +++..|
T Consensus       151 ~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~---nP~wne~--f~f~v~~~--~---l~~~~l  220 (284)
T 2r83_A          151 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTL---NPYYNES--FSFEVPFE--Q---IQKVQV  220 (284)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCS---SCEEEEE--EEEECCTT--T---GGGEEE
T ss_pred             ceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCC---CCEEcee--EEEeCCHH--H---hCceEE
Confidence            57899999999996    3578999999875432  346677777763   4678754  66666655  3   356689


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus       221 ~i~V~d~d~  229 (284)
T 2r83_A          221 VVTVLDYDK  229 (284)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEeCCC
Confidence            999998754

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=96.97  E-value=0.0066  Score=47.79  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             EEEEEEeeccCCCc-------ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGIST-------EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-------~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      .++|+|.+|.+|+.       ..+|-||...+.+.....+.|+.++++   .++.|+..  |.+.+...       +...
T Consensus         4 ~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~-------~~~~   71 (126)
T 1rlw_A            4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND---INPVWNET--FEFILDPN-------QENV   71 (126)
T ss_dssp             EEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC---SSCEEEEE--EEEEECTT-------SCCE
T ss_pred             EEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCC---CCCcccce--EEEEecCC-------CCCE
Confidence            57899999999997       357899999998765567888888876   35678755  55555433       2457


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        72 l~i~V~d~d~   81 (126)
T 1rlw_A           72 LEITLMDANY   81 (126)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEECCC
Confidence            9999998754

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=96.64  E-value=0.014  Score=46.93  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=54.4

Q ss_pred             EEEEEEeeccCCCc-----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~~~L  233 (305)
                      .++|+|.+|.+|+.     ..+|.||+..+.......+.|+.++++   .++.|+..  |.+. ++.+  .   +++..|
T Consensus        23 ~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~v~~~--~---~~~~~l   92 (138)
T 1ugk_A           23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT---LDPAFDET--FTFYGIPYT--Q---IQELAL   92 (138)
T ss_dssp             EEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSC---SSCEEEEE--EEEECCCST--T---GGGCEE
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCC---CCCcEeeE--EEEcCcCHH--H---hccCEE
Confidence            57899999999995     346899999998654457888888876   35678754  5553 5544  2   467789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        93 ~i~V~d~d~  101 (138)
T 1ugk_A           93 HFTILSFDR  101 (138)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEECCC
Confidence            999998754

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=96.56  E-value=0.0091  Score=48.23  Aligned_cols=74  Identities=16%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             eEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         159 LQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      -.++|+|++|.+|+..    .+|.||+..+.......+.|+.++++   .++.|+..  |.+.|+.+  .   +.+..|.
T Consensus        34 ~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~---l~~~~L~  103 (143)
T 3f04_A           34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT---LNPVFNEQ--FTFKVPYS--E---LGGKTLV  103 (143)
T ss_dssp             TEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSC---SSCEEEEE--EEECCCHH--H---HTTCEEE
T ss_pred             CEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCC---CCCcCcCe--EEEeecHh--h---cCCCEEE
Confidence            3578999999999963    57899999997655557888888877   34578754  55556544  2   4567899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus       104 i~V~d~d~  111 (143)
T 3f04_A          104 MAVYDFDR  111 (143)
T ss_dssp             EEEEECCS
T ss_pred             EEEEeCCC
Confidence            99998754

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=96.54  E-value=0.009  Score=49.05  Aligned_cols=73  Identities=16%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      .++|+|++|.+|+..    .+|.||+..+.......+.|+.++++   .++.|+..  |.+.|..+  .   +.+..|.|
T Consensus        43 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~---l~~~~L~i  112 (152)
T 1rsy_A           43 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT---LNPVFNEQ--FTFKVPYS--E---LGGKTLVM  112 (152)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTC---SSCEEEEE--EEECCCHH--H---HTTCEEEE
T ss_pred             EEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCC---CCCcCccc--EEEeecHH--H---cCCCEEEE
Confidence            678999999999963    56899999997654557888888876   35678754  55556543  2   35678999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus       113 ~V~d~d~  119 (152)
T 1rsy_A          113 AVYDFDR  119 (152)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9998754

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=96.41  E-value=0.017  Score=47.27  Aligned_cols=73  Identities=19%  Similarity=0.171  Sum_probs=53.6

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|++|.+|+..    .+|.||+..+.....  ..+.|+.++++   .++.|+.  .|.+.|..+  .   +++..|
T Consensus        31 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t---~nP~wne--~f~f~v~~~--~---l~~~~l  100 (153)
T 1w15_A           31 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT---PNAVFNE--LFVFDIPCE--S---LEEISV  100 (153)
T ss_dssp             EEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSC---SSEEEEE--EEEEECCSS--S---STTEEE
T ss_pred             EEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCC---CCCeecc--eEEEECCHH--H---hCceEE
Confidence            678999999999953    578999999976433  25678888876   3577885  466667665  3   467789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus       101 ~v~V~d~d~  109 (153)
T 1w15_A          101 EFLVLDSER  109 (153)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCC
Confidence            999998754

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.34  E-value=0.0038  Score=50.85  Aligned_cols=73  Identities=14%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             EEEEEEeeccCCCcc-----------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccc
Q psy7271         160 QFRITVLQAVGISTE-----------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPH  228 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-----------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl  228 (305)
                      .++|+|.+|.+|+..           .+|.||+..+.......+.|+.++++   .++.|+.  .|.+.|+.+  .   +
T Consensus        27 ~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t---~nP~wne--~f~f~v~~~--~---l   96 (147)
T 2enp_A           27 HLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKT---QKPVFEE--RYTFEIPFL--E---A   96 (147)
T ss_dssp             EEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSC---SSCCCCB--CCEECCCHH--H---H
T ss_pred             EEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCC---CCCeEee--eEEEEeChH--H---h
Confidence            678999999999973           67899999998654456788888776   3456874  455566554  2   3


Q ss_pred             cCCcEEEEEeeccc
Q psy7271         229 QSTSQIYQVWCSPL  242 (305)
Q Consensus       229 ~~~~L~fEVwG~~~  242 (305)
                      ++..|.|+||-+..
T Consensus        97 ~~~~L~~~V~d~d~  110 (147)
T 2enp_A           97 QRRTLLLTVVDFDK  110 (147)
T ss_dssp             HHSEEEEEEECCST
T ss_pred             ccCEEEEEEEECCC
Confidence            56689999998753

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.28  E-value=0.012  Score=47.48  Aligned_cols=73  Identities=15%  Similarity=0.012  Sum_probs=53.6

Q ss_pred             EEEEEEeeccCCCccc---CceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGISTEY---SDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~y---sdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      .++|+|.+|.+|+..-   +|.||+..+.....  ..+.|+.++++   .++.|+..  |.+.|+.+  -   +++..|.
T Consensus        25 ~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~---l~~~~L~   94 (142)
T 2dmg_A           25 KLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKT---LNPVFDQS--FDFSVSLP--E---VQRRTLD   94 (142)
T ss_dssp             EEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSC---SSCEEEEE--EEECCCHH--H---HHHCEEE
T ss_pred             EEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCC---CCCCcCce--EEEEecHH--H---hCcCEEE
Confidence            5789999999999521   78999999976443  46788888876   35678744  66666544  2   4567899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus        95 i~V~d~d~  102 (142)
T 2dmg_A           95 VAVKNSGG  102 (142)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99998753

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=96.22  E-value=0.033  Score=45.26  Aligned_cols=73  Identities=11%  Similarity=0.112  Sum_probs=53.4

Q ss_pred             EEEEEEeeccCCCc-----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      .++|+|++|.+|+.     ..+|.||+..+.....  ..+.|..++++   ..+.|+..  |.+.|+.+  .   +++..
T Consensus        24 ~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~---~~~~~   93 (148)
T 3fdw_A           24 SLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDT---VNPLYDET--LRYEIPES--L---LAQRT   93 (148)
T ss_dssp             EEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSC---SSCEEEEE--EEEECCST--T---GGGCE
T ss_pred             EEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCC---CCCcEeeE--EEEEeChh--H---hCceE
Confidence            57899999999994     2468999999875443  36778888877   34578755  55567665  3   46678


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        94 L~~~V~d~d~  103 (148)
T 3fdw_A           94 LQFSVWHHGR  103 (148)
T ss_dssp             EEEEEEEECG
T ss_pred             EEEEEEECCC
Confidence            9999997654

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=96.21  E-value=0.023  Score=47.18  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=54.4

Q ss_pred             eEEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         159 LQFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      -.++|+|.+|.+|+..    .+|-||+..+.....  ..+.|+.++++   .++.|+..  |.+.|+.+  .   +++..
T Consensus        37 ~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~---l~~~~  106 (166)
T 2cm5_A           37 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT---LNPEFNEE--FFYDIKHS--D---LAKKS  106 (166)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSC---SSCEEEEE--EEEECCGG--G---GGGCE
T ss_pred             CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCC---CCCcccce--EEEEcchH--h---cCCCE
Confidence            3678999999999963    578999999976432  46788888876   35678754  66666654  2   46788


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus       107 L~i~V~d~d~  116 (166)
T 2cm5_A          107 LDISVWDYDI  116 (166)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEECCC
Confidence            9999998754

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=96.20  E-value=0.022  Score=45.23  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=54.1

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|.+|.+|+..    .+|.||+..+.....  ..+.|+.++++   .++.|+.  .|.+.|..+  .   +.+..|
T Consensus        17 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t---~nP~wne--~f~f~v~~~--~---l~~~~l   86 (138)
T 3n5a_A           17 SIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN---LNPIFNE--SFAFDIPTE--K---LRETTI   86 (138)
T ss_dssp             EEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSC---SSCEEEE--EEEEECCGG--G---GGGEEE
T ss_pred             eEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCC---CCCcCcc--eEEEECChh--h---cCceEE
Confidence            578999999999963    568999999976533  35678888877   3457874  466667665  3   456789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        87 ~~~V~d~~~   95 (138)
T 3n5a_A           87 IITVMDKDK   95 (138)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCC
Confidence            999998754

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=96.18  E-value=0.024  Score=46.74  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|.+|.+|+..    .+|.||+..+.....  ..+.|+.++++   .++.|+.  .|.+.|+.+  .   +++..|
T Consensus        26 ~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne--~f~f~v~~~--~---l~~~~l   95 (159)
T 1tjx_A           26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT---LNPYYNE--SFSFEVPFE--Q---IQKVQV   95 (159)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC---SSCEEEE--EEEEECCGG--G---GGGCEE
T ss_pred             EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCC---CCCcccc--eEEEEcCHH--H---hCCcEE
Confidence            678999999999963    578999999875432  35778888776   3567875  466666554  2   456789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        96 ~i~V~d~d~  104 (159)
T 1tjx_A           96 VVTVLDYDK  104 (159)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCC
Confidence            999998754

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.18  E-value=0.0052  Score=52.87  Aligned_cols=82  Identities=20%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             CCCCCCCeeEEEEEEeeccCCCccc-------CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCcc
Q psy7271         151 PHLSPGTELQFRITVLQAVGISTEY-------SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAA  223 (305)
Q Consensus       151 ~~L~lG~~~~FrVtIlqAsGLp~~y-------sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~  223 (305)
                      .+|..|+.+ |.|.|.+|.==|..+       -.+||-|.||. .| +-+|+-++    |..+.|+.+-.+.|.+..-  
T Consensus        11 ~~l~~gEnl-fEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~d-fE-tq~Tpv~~----G~~p~y~fts~Y~V~~d~~--   81 (156)
T 2yrb_A           11 IHLERGENL-FEIHINKVTFSSEVLQASGDKEPVTFCTYAFYD-FE-LQTTPVVR----GLHPEYNFTSQYLVHVNDL--   81 (156)
T ss_dssp             SSCCSSCEE-EEEEEEEECCCHHHHHHHCSSCCEEEEEECSTT-CC-CEECCCEE----SSSCCCCEEEEEEECCSHH--
T ss_pred             hhccCCCcE-EEEEEeEEEEcHHHHhhccccCCcEEEEEEEec-eE-eeeccccc----CCCCCcceEEEEEEEeCHH--
Confidence            466555554 888998887322212       22999999997 33 45554443    3456788888899888776  


Q ss_pred             ccccccCCcEEEEEeecc
Q psy7271         224 PLHPHQSTSQIYQVWCSP  241 (305)
Q Consensus       224 fl~yl~~~~L~fEVwG~~  241 (305)
                      |++||+++.|.+|+.=-.
T Consensus        82 fl~yL~~~~l~lELhqa~   99 (156)
T 2yrb_A           82 FLQYIQKNTITLEVHQAY   99 (156)
T ss_dssp             HHHHHHHCCEEEEEEEEC
T ss_pred             HHHHHhcCCEEEEEEEee
Confidence            999999999999998653

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=96.15  E-value=0.024  Score=45.67  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             EEEEEEeeccCCCcc---cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE---YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~~~L  233 (305)
                      ..+|+|.+|.+|+..   .+|-||+..+....  ...+.|+.++++   .++.|+.  .|.+. |+.+  .   +++..|
T Consensus        21 ~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wnE--~f~f~~v~~~--~---l~~~~L   90 (134)
T 2b3r_A           21 TLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKT---RNPTFNE--MLVYSGYSKE--T---LRQREL   90 (134)
T ss_dssp             EEEEEEEEEECCCCTTSCCCCEEEEEEEESCSSSCCCEECCCCCSC---SSCEEEE--EEEEESCCHH--H---HTTCEE
T ss_pred             EEEEEEEEeeCCCCCCCCCCCeEEEEEEEcCCCCCceecCCcCcCC---CCCCCcc--EEEECCcCHH--H---hCcCEE
Confidence            568999999999963   56899999987542  346788888876   3456875  46666 5544  2   367789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        91 ~~~V~d~d~   99 (134)
T 2b3r_A           91 QLSVLSAES   99 (134)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCC
Confidence            999998754

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=95.84  E-value=0.066  Score=43.52  Aligned_cols=72  Identities=11%  Similarity=0.152  Sum_probs=52.3

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|.+|.+|+..    .+|.||+..+....  ...+.|+.++++   ..+.|+..  |.+.++..  .+    ...|
T Consensus        32 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~~----~~~L  100 (149)
T 1a25_A           32 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS---LNPEWNET--FRFQLKES--DK----DRRL  100 (149)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSC---SSCEEEEE--EEEECCSG--GG----GCEE
T ss_pred             EEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCC---CCCcCCcE--EEEEeccc--cC----CCEE
Confidence            488999999999953    56899999987643  246788888876   35678765  55556654  22    3579


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus       101 ~i~V~d~d~  109 (149)
T 1a25_A          101 SVEIWDWDL  109 (149)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCC
Confidence            999998754

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=95.83  E-value=0.051  Score=42.75  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=52.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEee-cCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSAT-AAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~V-Tee~~fl~yl~~~~  232 (305)
                      .++|+|.+|.+|+..    .+|.||+..+....  ...+.|+.++++   ..+.|+..  |.+.+ ..+     -+.+..
T Consensus        19 ~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~~-----~~~~~~   88 (129)
T 2bwq_A           19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT---LEPKWNQT--FIYSPVHRR-----EFRERM   88 (129)
T ss_dssp             EEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSB---SSCEEEEE--EEECSCCGG-----GGGGCE
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCC---CCCccccE--EEEccCCHH-----HhcCCe
Confidence            578999999999963    46899999987543  346788888876   35678754  55553 322     246778


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        89 l~~~V~d~d~   98 (129)
T 2bwq_A           89 LEITLWDQAR   98 (129)
T ss_dssp             EEEEEEEC--
T ss_pred             EEEEEEECCc
Confidence            9999998754

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=95.82  E-value=0.044  Score=48.99  Aligned_cols=74  Identities=16%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             eEEEEEEeeccCCCc----ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         159 LQFRITVLQAVGIST----EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~----~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      -..+|+|++|.+|+.    ..+|.||...+.......+.|+.++++   .++.|+.  .|.+.|..+  .   ++...|.
T Consensus        19 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~---~nP~wne--~f~f~v~~~--~---~~~~~l~   88 (284)
T 2r83_A           19 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT---LNPVFNE--QFTFKVPYS--E---LAGKTLV   88 (284)
T ss_dssp             TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSC---SSCEEEE--EEEECCCGG--G---CTTCEEE
T ss_pred             CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCC---CCCeeCc--eEEEEechH--H---hCcCEEE
Confidence            367899999999996    357899999997655556788888776   3556874  466666554  2   4677899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus        89 ~~V~d~d~   96 (284)
T 2r83_A           89 MAVYDFDR   96 (284)
T ss_dssp             EEEEECCS
T ss_pred             EEEEECCC
Confidence            99998753

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.82  E-value=0.077  Score=42.38  Aligned_cols=72  Identities=22%  Similarity=0.082  Sum_probs=53.2

Q ss_pred             eEEEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         159 LQFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      -.++|+|.+|.+|+..   .+|-||...+.+.   .+.|+.++++   ..+.|+..  |.+.+...  .+  .....|.|
T Consensus         7 g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~---~~kT~v~~~t---~nP~wne~--f~f~v~~~--~~--~~~~~l~i   74 (140)
T 2dmh_A            7 GMLRVIVESASNIPKTKFGKPDPIVSVIFKDE---KKKTKKVDNE---LNPVWNEI--LEFDLRGI--PL--DFSSSLGI   74 (140)
T ss_dssp             CEEEEEEEEEESCCCCSSSCCCEEEEEECSSC---EEECCCCCSC---SSCEEEEE--EEEECSSC--CC--CTTCEEEE
T ss_pred             cEEEEEEEEeeCCCCCCCCCCCeEEEEEECCE---eEEeeeecCC---CCCccCcE--EEEEeccc--cc--CCCCEEEE
Confidence            3678999999999963   5789999998863   4778888776   35578765  55566654  22  25678999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        75 ~V~d~d~   81 (140)
T 2dmh_A           75 IVKDFET   81 (140)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            9998754

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.81  E-value=0.015  Score=46.89  Aligned_cols=76  Identities=12%  Similarity=0.089  Sum_probs=53.8

Q ss_pred             eeEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         158 ELQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       158 ~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .-.++|+|.+|.+|+..    .+|.||+..+.......+.|+.++++   .++.|+..  |.+.+...    +-+....|
T Consensus        25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~----~~~~~~~l   95 (141)
T 2d8k_A           25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN---LNPHWNET--FLFEGFPY----EKVVQRIL   95 (141)
T ss_dssp             SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTC---SSCCCCEE--EEECSCCH----HHHTTSEE
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCC---CCCccccE--EEECccCH----HHcccCEE
Confidence            34678999999999964    46899999998655556788887766   34568755  44443221    12466789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        96 ~i~V~d~d~  104 (141)
T 2d8k_A           96 YLQVLDYDR  104 (141)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEEECCC
Confidence            999998754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=95.71  E-value=0.032  Score=44.87  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=54.1

Q ss_pred             eeEEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccC
Q psy7271         158 ELQFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQS  230 (305)
Q Consensus       158 ~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~  230 (305)
                      .-.++|+|.+|.+|+..    .+|.||+..+.....  ..+.|+.++++   .++.|+..  |.+. ++.+  .   ++.
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~~--~---~~~   97 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT---RNPVWNET--LQYHGITEE--D---MQR   97 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSC---SSCEEEEE--EEEESCCHH--H---HHH
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCC---CCCcCcCE--EEEcccCHH--H---ccC
Confidence            34678999999999953    568999999986432  46788888876   35678865  5555 5443  2   345


Q ss_pred             CcEEEEEeeccc
Q psy7271         231 TSQIYQVWCSPL  242 (305)
Q Consensus       231 ~~L~fEVwG~~~  242 (305)
                      ..|.|+||-+..
T Consensus        98 ~~l~i~V~d~d~  109 (142)
T 2chd_A           98 KTLRISVCDEDK  109 (142)
T ss_dssp             CEEEEEEEEECT
T ss_pred             CEEEEEEEECCC
Confidence            689999998754

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=95.66  E-value=0.13  Score=40.81  Aligned_cols=71  Identities=24%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             CeeEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         157 TELQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       157 ~~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      .....+|+|.+|.+|+..    .+|-||...+... ...+.|+.++++   .++.|+..-.|  .+...         ..
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~t---~nP~wne~f~f--~v~~~---------~~   67 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKNT---LDPKWNQHYDL--YVGKT---------DS   67 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSSC---SSCEEEEEEEE--EEETT---------CC
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCCC---CCCCccCEEEE--EeCCC---------CE
Confidence            356789999999999853    5789999988654 346888888777   35678876444  44433         13


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        68 l~~~v~d~d~   77 (132)
T 3pyc_A           68 ITISVWNHKK   77 (132)
T ss_dssp             EEEEEEEGGG
T ss_pred             EEEEEEECCC
Confidence            9999998754

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=95.60  E-value=0.065  Score=44.95  Aligned_cols=73  Identities=11%  Similarity=0.230  Sum_probs=51.6

Q ss_pred             CeeEEEEEEeeccCCCcc----cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCcccccccc
Q psy7271         157 TELQFRITVLQAVGISTE----YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQ  229 (305)
Q Consensus       157 ~~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~  229 (305)
                      ..-.++|+|++|.+|+..    .+|-||...+.....   ..+.|+.++++   ..+.|+..  |.+.|...        
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t---~nP~Wne~--f~f~v~~~--------   72 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKS---LNPKWNEE--ILFRVLPQ--------   72 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSC---SSCEEEEE--EEEEECTT--------
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCC---CCCcccce--EEEEEcCC--------
Confidence            445688999999999853    568999999986443   45788888876   35678865  44555543        


Q ss_pred             CCcEEEEEeeccc
Q psy7271         230 STSQIYQVWCSPL  242 (305)
Q Consensus       230 ~~~L~fEVwG~~~  242 (305)
                      ...|.|+||-+..
T Consensus        73 ~~~L~~~V~d~d~   85 (176)
T 3m7f_B           73 RHRILFEVFDENR   85 (176)
T ss_dssp             TCEEEEEEEECC-
T ss_pred             CCEEEEEEEECCC
Confidence            2579999998754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=95.54  E-value=0.063  Score=48.78  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=55.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      .++|+|++|.+|+..    .+|-||+..+.......+.|+.++++   .++.|+..  |.+.|+.+  .   +++..|.|
T Consensus        21 ~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~---l~~~~L~~   90 (296)
T 1dqv_A           21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT---LNPIFNET--FQFSVPLA--E---LAQRKLHF   90 (296)
T ss_dssp             EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSC---SSCEEEEE--EEEECCGG--G---GSSCCCEE
T ss_pred             EEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCC---CCCcEeeE--EEEEecHH--H---hcCCEEEE
Confidence            589999999999963    47899999987555557888888776   35678755  55566544  2   46678999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        91 ~V~d~d~   97 (296)
T 1dqv_A           91 SVYDFDR   97 (296)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCC
Confidence            9998754

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=95.29  E-value=0.13  Score=42.13  Aligned_cols=74  Identities=11%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             eeEEEEEEeeccCCCcc---cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         158 ELQFRITVLQAVGISTE---YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       158 ~~~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      .=.++|+|.+|.+|+..   .+|.||+..+....  ...+.|..++++   .++.|+..  |.+.|+.+  .+   .. .
T Consensus        26 ~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~--~~---~~-~   94 (153)
T 3fbk_A           26 DRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDC---RDPAFHEH--FFFPVQEE--DD---QK-R   94 (153)
T ss_dssp             SSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTC---SSCEEEEE--EEEECCGG--GT---TS-E
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCC---CCCccccE--EEEecccH--Hh---CC-E
Confidence            33578999999999863   57899999987543  235778888876   34678755  55566554  32   22 4


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        95 L~i~V~d~d~  104 (153)
T 3fbk_A           95 LLVTVWNRAS  104 (153)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEeCCC
Confidence            9999998754

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=95.01  E-value=0.027  Score=47.13  Aligned_cols=73  Identities=16%  Similarity=0.197  Sum_probs=54.5

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ..+|+|++|.+|++.    .+|-||+..+.....   ..+.|+.++++   .++.|+.+  |.+.|+.+  .   +....
T Consensus        44 ~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~t---lnP~wnE~--F~f~v~~~--~---l~~~~  113 (155)
T 2z0u_A           44 QFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS---DTLVFNEV--FWVSMSYP--A---LHQKT  113 (155)
T ss_dssp             EEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECC---SSEEEEEE--EEEECCHH--H---HHHCE
T ss_pred             EEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCC---CCCccccE--EEEEcCHH--H---hCcCE
Confidence            578999999999963    578999999976321   25788888887   35778865  55556654  2   36678


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus       114 L~~~V~d~d~  123 (155)
T 2z0u_A          114 LRVDVCTTDR  123 (155)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEECCC
Confidence            9999998754

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=94.92  E-value=0.12  Score=40.93  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CCeeEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCC
Q psy7271         156 GTELQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQST  231 (305)
Q Consensus       156 G~~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~  231 (305)
                      -..-.++|+|.+|.+|+..    .+|-||...+.+   ..+.|+.++++   ..+.|+..  |.+.+.+.        +.
T Consensus        10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t---~nP~wne~--f~f~~~~~--------~~   73 (133)
T 2ep6_A           10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKN---LNPEWNKV--FTFPIKDI--------HD   73 (133)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT---EEEECCCCSSC---SSCCCCEE--EEEEESCT--------TC
T ss_pred             CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC---EEEEeeeecCC---CCCccccE--EEEEecCC--------CC
Confidence            3455689999999999953    568999999866   35788888876   34568865  44455432        25


Q ss_pred             cEEEEEeeccc
Q psy7271         232 SQIYQVWCSPL  242 (305)
Q Consensus       232 ~L~fEVwG~~~  242 (305)
                      .|.|+||-+..
T Consensus        74 ~l~i~V~d~d~   84 (133)
T 2ep6_A           74 VLEVTVFDEDG   84 (133)
T ss_dssp             EEEEEEEEEET
T ss_pred             EEEEEEEECCC
Confidence            79999998754

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=94.81  E-value=0.2  Score=40.36  Aligned_cols=68  Identities=15%  Similarity=0.052  Sum_probs=50.3

Q ss_pred             eEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         159 LQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      =+.+|+|.+|.+|+..    .+|-||...+-.   ..+.|+.++++   .++.|+..  |.+.+...        +..|.
T Consensus        17 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~t---~nP~Wne~--f~f~v~~~--------~~~l~   80 (148)
T 3kwu_A           17 AKISITVVCAQGLQAKDKTGSSDPYVTVQVGK---TKKRTKTIYGN---LNPVWEEN--FHFECHNS--------SDRIK   80 (148)
T ss_dssp             EEEEEEEEEEESCCCCSTTSCCCEEEEEEETT---EEEECCCCCSC---SSCEEEEE--EEEEECST--------TCEEE
T ss_pred             cEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC---EEEECCccCCC---CCCCcccE--EEEEecCC--------CCEEE
Confidence            4678999999999963    578999999833   46788888877   34578765  55555433        24699


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus        81 ~~v~d~d~   88 (148)
T 3kwu_A           81 VRVLDEDD   88 (148)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99998765

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=94.56  E-value=0.046  Score=43.58  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=52.3

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~~~  232 (305)
                      .++|+|.+|.+|+..    .+|.||+..+....  ...+.|+.++++   .++.|+..  |.+. +..+     -+.+..
T Consensus        22 ~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t---~nP~wne~--f~f~~~~~~-----~~~~~~   91 (141)
T 1v27_A           22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT---LEPKWNQT--FIYSPVHRR-----EFRERM   91 (141)
T ss_dssp             EEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSC---SSCCCCCC--CEECSCCTT-----GGGTCE
T ss_pred             EEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCC---CCCccccE--EEEccCCHH-----HhcCCE
Confidence            578999999999963    46899999987543  246778888876   34567754  5555 3333     246788


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        92 l~i~V~d~d~  101 (141)
T 1v27_A           92 LEITLWDQAR  101 (141)
T ss_dssp             EEEEEEEBCS
T ss_pred             EEEEEEECCC
Confidence            9999998754

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=94.45  E-value=0.1  Score=43.77  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=49.2

Q ss_pred             EEEEEEeeccCCCc-----ccCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGIST-----EYSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-----~ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      .++|+|.+|.+|+.     ..+|-||+..+.....  ..+.|+.++++   .++.|+..  |.+.|..        +...
T Consensus        31 ~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~--------~~~~   97 (171)
T 2q3x_A           31 QLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT---LDPLYQQS--LVFDESP--------QGKV   97 (171)
T ss_dssp             EEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC---SSCEEEEE--EECSSCC--------TTEE
T ss_pred             EEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC---CCCCCCcE--EEEEecC--------CCCE
Confidence            57899999999994     3568999999887543  25778888876   34568754  5544532        3468


Q ss_pred             EEEEEe-ec
Q psy7271         233 QIYQVW-CS  240 (305)
Q Consensus       233 L~fEVw-G~  240 (305)
                      |.|+|| -+
T Consensus        98 L~~~V~~d~  106 (171)
T 2q3x_A           98 LQVIVWGDY  106 (171)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEcC
Confidence            999999 54

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=94.39  E-value=0.18  Score=40.00  Aligned_cols=71  Identities=10%  Similarity=0.149  Sum_probs=50.8

Q ss_pred             CCeeEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCccc-CCCCCCCeeeeEEEEEEEeecCCccccccccC
Q psy7271         156 GTELQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVK-NTGKGTPLGFYHIQNLTSATAAHAAPLHPHQS  230 (305)
Q Consensus       156 G~~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvk-nt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~  230 (305)
                      ...-.++|+|.+|.+|+..    .+|-||...+..+   .+.|+.++ ++   .++.|+..  |.+.|..        ..
T Consensus         7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~kT~~~~~~~---~nP~Wne~--f~f~v~~--------~~   70 (136)
T 1wfj_A            7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMG---TTPEWNET--FIFTVSE--------GT   70 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC---EEECCCCTTCC---SSCEEEEE--EEEEEES--------SC
T ss_pred             CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCc---cceeEeccCCC---CCCccCcE--EEEEECC--------CC
Confidence            3455788999999999963    4679999998764   36788777 44   35678766  4444443        24


Q ss_pred             CcEEEEEeeccc
Q psy7271         231 TSQIYQVWCSPL  242 (305)
Q Consensus       231 ~~L~fEVwG~~~  242 (305)
                      ..|.|+||-+..
T Consensus        71 ~~l~~~V~d~~~   82 (136)
T 1wfj_A           71 TELKAKIFDKDV   82 (136)
T ss_dssp             CEEEEEECCSSS
T ss_pred             CEEEEEEEECCC
Confidence            579999998753

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=94.36  E-value=0.17  Score=41.00  Aligned_cols=74  Identities=11%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CCeeEEEEEEeeccCCCcc----cCceEEEEEeCCCCc---cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccc
Q psy7271         156 GTELQFRITVLQAVGISTE----YSDIFCQFNFLHRHD---EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPH  228 (305)
Q Consensus       156 G~~~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e---e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl  228 (305)
                      ...-.++|+|++|.+|+..    .+|-||...+....+   ..+.|+.++++   .++.|+..  |.+.+...       
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~v~~~-------   84 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS---LNPKWNEE--ILFRVHPQ-------   84 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSC---SSCCCCEE--EEEEECTT-------
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCC---CCCCCCCE--EEEEecCC-------
Confidence            3456789999999999953    568999999885432   46788888876   34568765  44455543       


Q ss_pred             cCCcEEEEEeeccc
Q psy7271         229 QSTSQIYQVWCSPL  242 (305)
Q Consensus       229 ~~~~L~fEVwG~~~  242 (305)
                       +..|.|+||-+..
T Consensus        85 -~~~l~~~V~d~d~   97 (153)
T 3b7y_A           85 -QHRLLFEVFDENR   97 (153)
T ss_dssp             -TCEEEEEEEECCS
T ss_pred             -CCEEEEEEEECCC
Confidence             3579999998754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=94.36  E-value=0.25  Score=44.83  Aligned_cols=73  Identities=15%  Similarity=0.119  Sum_probs=52.9

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|++|.+|+..    .+|.||+..+....  .....|..++++.   ++.|+..  |.+.|+.+  -   +++..|
T Consensus       153 ~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~---nP~wne~--f~f~v~~~--~---l~~~~L  222 (296)
T 1dqv_A          153 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL---NPTYNEA--LVFDVAPE--S---VENVGL  222 (296)
T ss_dssp             EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCS---SCEEEEC--CCCCCCSG--G---GGSCCC
T ss_pred             eeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCC---CCeECce--EEEEcCHH--H---ccCcEE
Confidence            578999999999853    56899999987422  2356788777763   4578754  55567665  3   366789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus       223 ~i~V~d~d~  231 (296)
T 1dqv_A          223 SIAVVDYDC  231 (296)
T ss_dssp             CCEEEECCS
T ss_pred             EEEEEeCCC
Confidence            999998754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=94.21  E-value=0.048  Score=43.69  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc-----------cceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCcc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD-----------EAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAA  223 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e-----------e~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~  223 (305)
                      .++|+|++|.+|+..    .+|-||+..+.....           ..+.|+.++++   .++.|+..  |.+. |+.+  
T Consensus        19 ~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~v~~~--   91 (142)
T 1rh8_A           19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS---LNPEWNQT--VIYKSISME--   91 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH---HSCEEEEE--EEECSCCHH--
T ss_pred             EEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCC---CCCCCCCE--EEECCcCHH--
Confidence            578999999999963    578999999987542           23567777765   35678765  5544 4433  


Q ss_pred             ccccccCCcEEEEEeeccc
Q psy7271         224 PLHPHQSTSQIYQVWCSPL  242 (305)
Q Consensus       224 fl~yl~~~~L~fEVwG~~~  242 (305)
                      .   +.+..|.|+||-+..
T Consensus        92 ~---l~~~~l~i~V~d~d~  107 (142)
T 1rh8_A           92 Q---LMKKTLEVTVWDYDR  107 (142)
T ss_dssp             H---HTTCEEEEEEEEECS
T ss_pred             H---ccCCEEEEEEEECCC
Confidence            1   467789999998754

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=94.01  E-value=0.28  Score=41.60  Aligned_cols=69  Identities=19%  Similarity=0.217  Sum_probs=50.0

Q ss_pred             CeeEEEEEEeeccCCC-cc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCc
Q psy7271         157 TELQFRITVLQAVGIS-TE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTS  232 (305)
Q Consensus       157 ~~~~FrVtIlqAsGLp-~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~  232 (305)
                      ..-+.+|+|.+|.+|+ ..   -+|-||+..+.+   ..+.|+.++++   ..+.|+..  |.+.|++         ...
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~---~~~kT~v~~~t---lnP~Wne~--f~f~v~~---------~~~   96 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNT---NSPKWKQP--LTVIVTP---------VSK   96 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSSC---SSCEEEEE--EEEEECT---------TCE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC---EEeEccccCCC---CCCeECCE--EEEEeCC---------CCE
Confidence            3456899999999999 32   268999998865   46788888776   35678765  4444532         456


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||-+..
T Consensus        97 L~~~V~D~d~  106 (173)
T 2nq3_A           97 LHFRVWSHQT  106 (173)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEECCC
Confidence            9999998754

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=92.42  E-value=0.42  Score=38.37  Aligned_cols=73  Identities=15%  Similarity=0.044  Sum_probs=50.6

Q ss_pred             EEEEEEeeccCCCc-ccCceEEEEEeCCC-CccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         160 QFRITVLQAVGIST-EYSDIFCQFNFLHR-HDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       160 ~FrVtIlqAsGLp~-~ysdVFCQy~F~~~-~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      ..+|+|.+|..... ..+|-||+..+... ....+.|+.++++   .++.|+.+  |.+.|..+  .   +++..|.|+|
T Consensus        27 ~L~V~v~~a~~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~t---lnP~wnE~--f~f~v~~~--~---l~~~~L~~~V   96 (138)
T 1wfm_A           27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ---LHTTWEEG--LVLPLAEE--E---LPTATLTLTL   96 (138)
T ss_dssp             EEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCC---SSEECSSC--EEEECCTT--S---STTCEEEEEE
T ss_pred             EEEEEEEEEEcCCCCCCcceEEEEEEEcCCCcccEecccCcCC---CCCcCCce--EEEEecHH--H---cCCCEEEEEE
Confidence            56788999985432 36789999998653 2235678887776   35678765  44456655  3   4677899999


Q ss_pred             eeccc
Q psy7271         238 WCSPL  242 (305)
Q Consensus       238 wG~~~  242 (305)
                      |-+..
T Consensus        97 ~d~d~  101 (138)
T 1wfm_A           97 RTCDR  101 (138)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            98753

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=91.88  E-value=0.77  Score=44.34  Aligned_cols=69  Identities=9%  Similarity=0.133  Sum_probs=50.6

Q ss_pred             eEEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         159 LQFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      -+++|+|.+|.||+..    .+|-||...+..   ..+.|+.++++   .++.|+..  |.+.+...       ....|.
T Consensus       387 ~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~---~~~~T~~~~~t---~nP~w~e~--f~f~~~~~-------~~~~l~  451 (510)
T 3jzy_A          387 GRLMVHVIEATELKACKPNGKSNPYCEISMGS---QSYTTRTIQDT---LNPKWNFN--CQFFIKDL-------YQDVLC  451 (510)
T ss_dssp             EEEEEEEEEEESCCCCSTTSCCCEEEEEEETT---EEEECCCCSSC---SSCEEEEE--EEEEESCT-------TTCEEE
T ss_pred             ceEEEEeceeecCCCCCCCCCCCeEEEEEECC---eeccCCccCCC---CCCccCce--EEEEecCC-------CCCEEE
Confidence            4689999999999753    578999999843   46788888877   34578755  44445332       345799


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||-+..
T Consensus       452 ~~v~d~d~  459 (510)
T 3jzy_A          452 LTLFDRDQ  459 (510)
T ss_dssp             EEEEECCS
T ss_pred             EEEEeCCC
Confidence            99998765

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=91.12  E-value=0.88  Score=47.65  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=55.5

Q ss_pred             eeEEEEEEeeccCCCc-------ccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccC
Q psy7271         158 ELQFRITVLQAVGIST-------EYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQS  230 (305)
Q Consensus       158 ~~~FrVtIlqAsGLp~-------~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~  230 (305)
                      .-..+|+|++|.+|+.       ..+|-||+..+.......+.|+.++++   ..+.|+.+  |.+.|...       ..
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~t---lNPvWNEt--F~F~v~~~-------~~   84 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND---INPVWNET--FEFILDPN-------QE   84 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC---SSCEEEEE--EEEEECTT-------SC
T ss_pred             ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCC---CCCeeeeE--EEEEecCC-------CC
Confidence            4568999999999997       257899999998765567888888876   35678754  55555543       34


Q ss_pred             CcEEEEEeecccc
Q psy7271         231 TSQIYQVWCSPLA  243 (305)
Q Consensus       231 ~~L~fEVwG~~~~  243 (305)
                      ..|.|+||-+..-
T Consensus        85 ~~L~~~V~D~D~~   97 (749)
T 1cjy_A           85 NVLEITLMDANYV   97 (749)
T ss_dssp             CBCEEEEEECCSS
T ss_pred             CEEEEEEEECCCC
Confidence            4799999988654

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=90.47  E-value=1.5  Score=34.75  Aligned_cols=67  Identities=12%  Similarity=0.131  Sum_probs=45.2

Q ss_pred             EEEEEEeeccCCCcc---------------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccc
Q psy7271         160 QFRITVLQAVGISTE---------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAP  224 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~f  224 (305)
                      ..+|+|.+|.+|++.               .+|-||...+-+  .....|+..+++   .++.|+..  |.+.|.+.   
T Consensus         7 ~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~--~~~~~T~~~~~t---~nP~WnE~--f~f~v~~~---   76 (136)
T 1gmi_A            7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD--SRIGQTATKQKT---NSPAWHDE--FVTDVCNG---   76 (136)
T ss_dssp             EEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT--EEEEECCCCSSC---SSCEEEEE--EEEEEEEE---
T ss_pred             EEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC--eEeeeeeEECCC---cCCccCCE--EEEEecCC---
Confidence            578999999999853               288999998733  223456655555   35678765  44444321   


Q ss_pred             cccccCCcEEEEEeeccc
Q psy7271         225 LHPHQSTSQIYQVWCSPL  242 (305)
Q Consensus       225 l~yl~~~~L~fEVwG~~~  242 (305)
                            ..|.|+||-+..
T Consensus        77 ------~~L~~~V~d~d~   88 (136)
T 1gmi_A           77 ------RKIELAVFHDAP   88 (136)
T ss_dssp             ------CEEEEEEEECCS
T ss_pred             ------CEEEEEEEeCCC
Confidence                  469999998653

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=87.36  E-value=2.9  Score=35.02  Aligned_cols=69  Identities=12%  Similarity=0.092  Sum_probs=47.9

Q ss_pred             CeeEEEEEEeeccCCCcc--------------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCc
Q psy7271         157 TELQFRITVLQAVGISTE--------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHA  222 (305)
Q Consensus       157 ~~~~FrVtIlqAsGLp~~--------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~  222 (305)
                      ..=..+|+|.+|.+|++.              .+|-||....-+.  ....|...++|   .++.|+-.  |.+.|.+. 
T Consensus        27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~--~~~kT~v~~kt---lnP~WNE~--F~f~v~~~-   98 (157)
T 2fk9_A           27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV--RVGQTSTKQKT---NKPTYNEE--FCANVTDG-   98 (157)
T ss_dssp             EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTE--EEEECCCCSSC---SSCEEEEE--EEEEEEEE-
T ss_pred             CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCE--eeEEeeecCCC---CCCccCcE--EEEEcCCC-
Confidence            345789999999999853              4789999987442  24567776666   34578755  55555432 


Q ss_pred             cccccccCCcEEEEEeecc
Q psy7271         223 APLHPHQSTSQIYQVWCSP  241 (305)
Q Consensus       223 ~fl~yl~~~~L~fEVwG~~  241 (305)
                              ..|.|+||-..
T Consensus        99 --------~~L~~~V~D~d  109 (157)
T 2fk9_A           99 --------GHLELAVFHET  109 (157)
T ss_dssp             --------CEEEEEEEECC
T ss_pred             --------CEEEEEEEECC
Confidence                    36899999754

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=82.28  E-value=2.6  Score=42.39  Aligned_cols=71  Identities=14%  Similarity=0.147  Sum_probs=50.9

Q ss_pred             eeEEEEEEeeccCCCcc---cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         158 ELQFRITVLQAVGISTE---YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       158 ~~~FrVtIlqAsGLp~~---ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      .-..+|+|++|.+|+..   .+|-||+..+.+.   .+.|+.++++.   ++.|+-+-.|.  +.+.      -....|.
T Consensus       393 ~~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~~~---~~kTkvik~tl---NP~Wne~f~f~--~~~~------~~~~~L~  458 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQ---EFRTGVVWNNN---NPRWTDKMDFE--NVLL------STGGPLR  458 (540)
T ss_dssp             EEEEEEEEEEEESCCCSSCSCCCEEEEEEETTE---EEECCCBCSCS---SCBCCCCEEEE--EEET------TTCCCEE
T ss_pred             ccEEEEEEEEccCCCcccCCCcCeEEEEEECCE---eeeeeeecCCC---CCCCCeEEEEE--EecC------CCCCEEE
Confidence            45889999999999874   4679999988652   38899998873   45677543333  2111      1456899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      ||||-+..
T Consensus       459 ~~V~D~D~  466 (540)
T 3nsj_A          459 VQVWDADY  466 (540)
T ss_dssp             EEEEECCS
T ss_pred             EEEEECCC
Confidence            99999765

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=81.42  E-value=9.8  Score=31.99  Aligned_cols=76  Identities=12%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             CCCCeeEEEEEEeeccCCCcccCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         154 SPGTELQFRITVLQAVGISTEYSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       154 ~lG~~~~FrVtIlqAsGLp~~ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .-|+.+-++|+|+.|+|||. -+|=+++-.|  + ...+.|+-+++.+  ..+.|+.+  |.-++.-.   +  ..+..|
T Consensus        16 ~~~~~msL~V~l~~a~~Lpg-~~Dp~akv~F--R-g~k~kTkvi~~~~--~npvfnE~--F~wpl~~~---l--d~~e~L   82 (144)
T 3l9b_A           16 PRGSHMALIVHLKTVSELRG-RADRIAKVTF--R-GQSFYSRVLENCE--DVADFDET--FRWPVASS---I--DRNEVL   82 (144)
T ss_dssp             ---CCEEEEEEEEEEESCCS-CEEEEEEEEE--T-TEEEECCCEEEEC--SCEEEEEE--EEEEESSC---C--CTTCEE
T ss_pred             cCCCcEEEEEEEEEecCCCC-CCCCeEEEEE--e-ccceeeEEeccCC--CCceEcce--EEecCCCC---C--CCCCEE
Confidence            46999999999999999995 5567777777  3 3577889987422  35678775  65577655   2  578889


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+|+=+.+
T Consensus        83 ~v~V~d~~~   91 (144)
T 3l9b_A           83 EIQIFNYSK   91 (144)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEECcc
Confidence            999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	97.24
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	96.92
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	96.64
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	96.49
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	96.25
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	96.23
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	96.11
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	96.01
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	95.84
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	95.51
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	95.04
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	94.87
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	94.52
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	94.44
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	94.06
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	93.16
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	91.71
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	87.85
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	82.59
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	80.77

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=0.00087  Score=52.32  Aligned_cols=73  Identities=16%  Similarity=0.227  Sum_probs=55.4

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|++|.+||..    .+|.||+..+.......+.|...+++.   .+.|+..  |.+.|+.+  .   +++..|.|
T Consensus        19 ~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~---~P~wne~--f~f~v~~~--~---~~~~~L~v   88 (130)
T d1dqva1          19 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTL---NPIFNET--FQFSVPLA--E---LAQRKLHF   88 (130)
T ss_dssp             EEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCS---SCEEEEE--EEEECCGG--G---GSSCCCEE
T ss_pred             EEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCC---CeeeeeE--EEEEEchH--H---cCCCeEEE
Confidence            468999999999863    567999999987666678888888773   4578765  55566655  3   46678999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||.+..
T Consensus        89 ~V~d~~~   95 (130)
T d1dqva1          89 SVYDFDR   95 (130)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCC
Confidence            9998743

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.0015  Score=51.62  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|++|.+||..    .+|.||+..+.......+.|..++++.   .+.|++.-.|  .|+.+  .   +.+..|.|
T Consensus        35 ~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~---~P~wne~f~f--~i~~~--~---l~~~~L~i  104 (143)
T d1rsya_          35 QLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL---NPVFNEQFTF--KVPYS--E---LGGKTLVM  104 (143)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCS---SCEEEEEEEE--CCCHH--H---HTTCEEEE
T ss_pred             EEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecccc---CcceeeeeEE--EEEee--c---cCCceEEE
Confidence            578999999999863    567999999987666678888887763   4578876444  56544  2   46778999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus       105 ~V~d~d~  111 (143)
T d1rsya_         105 AVYDFDR  111 (143)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCC
Confidence            9998643

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00072  Score=55.37  Aligned_cols=79  Identities=20%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             CCCCCCeeEEEEEEeeccCCCcc------cCc--eEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCcc
Q psy7271         152 HLSPGTELQFRITVLQAVGISTE------YSD--IFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAA  223 (305)
Q Consensus       152 ~L~lG~~~~FrVtIlqAsGLp~~------ysd--VFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~  223 (305)
                      +|..|..+ |.|.|.++. ++++      -.+  +||-|.|++..-  -+|+-++.    ....|+++-.+.|++..-  
T Consensus         4 ~l~~gEnl-fEihi~~~~-~s~e~l~~~~d~~p~tF~T~~Fyd~Et--q~TPv~~g----~~p~ynfts~Y~V~~d~~--   73 (142)
T d2yrba1           4 HLERGENL-FEIHINKVT-FSSEVLQASGDKEPVTFCTYAFYDFEL--QTTPVVRG----LHPEYNFTSQYLVHVNDL--   73 (142)
T ss_dssp             SCCSSCEE-EEEEEEEEC-CCHHHHHHHCSSCCEEEEEECSTTCCC--EECCCEES----SSCCCCEEEEEEECCSHH--
T ss_pred             EecCCCcE-EEEEEeeEE-EcHHHHhhccCCCCcEEEEEEEEeeee--ecCceecC----CCCcceeEEEEEEccCHH--
Confidence            45456554 778888874 2221      122  999999998433  44544433    345789998898888777  


Q ss_pred             ccccccCCcEEEEEeec
Q psy7271         224 PLHPHQSTSQIYQVWCS  240 (305)
Q Consensus       224 fl~yl~~~~L~fEVwG~  240 (305)
                      |++||+++.+.+|||=-
T Consensus        74 fl~YL~~~~~~lelhqa   90 (142)
T d2yrba1          74 FLQYIQKNTITLEVHQA   90 (142)
T ss_dssp             HHHHHHHCCEEEEEEEE
T ss_pred             HHHHHhhCCEEEEEEee
Confidence            99999999999999964

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0052  Score=48.22  Aligned_cols=74  Identities=14%  Similarity=0.176  Sum_probs=54.2

Q ss_pred             EEEEEEeeccCCCcc-----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEE
Q psy7271         160 QFRITVLQAVGISTE-----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQI  234 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~  234 (305)
                      .++|+|++|.|||..     .+|.||+..+.......+.|+.++++   ..+.|+..-.|. .++.+  .   ++...|.
T Consensus        23 ~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t---~nP~wne~f~f~-~~~~~--~---l~~~~L~   93 (138)
T d1ugka_          23 AFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT---LDPAFDETFTFY-GIPYT--Q---IQELALH   93 (138)
T ss_dssp             EEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSC---SSCEEEEEEEEE-CCCST--T---GGGCEEE
T ss_pred             EEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCC---CCCceeeEEEEe-eeCHH--H---cccceEE
Confidence            468999999999853     35799999998776667888887766   356787664442 25544  2   5677899


Q ss_pred             EEEeeccc
Q psy7271         235 YQVWCSPL  242 (305)
Q Consensus       235 fEVwG~~~  242 (305)
                      |+||.+..
T Consensus        94 ~~V~d~d~  101 (138)
T d1ugka_          94 FTILSFDR  101 (138)
T ss_dssp             EEEEEECS
T ss_pred             EEEEECCC
Confidence            99998744

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.49  E-value=0.0066  Score=47.44  Aligned_cols=73  Identities=19%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .+.|+|++|.+||..    .+|.||+..+......  ...|+.++++   ..+.|+++  |...|+.+  -   ++...|
T Consensus        16 ~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t---~~P~wne~--f~F~v~~~--~---~~~~~l   85 (138)
T d1w15a_          16 TLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT---PNAVFNEL--FVFDIPCE--S---LEEISV   85 (138)
T ss_dssp             EEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSC---SSEEEEEE--EEEECCSS--S---STTEEE
T ss_pred             EEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCC---CCCeECcE--EEEEecHH--H---hCccEE
Confidence            477999999999863    4679999998665443  3457888777   34678876  44567766  3   466779


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        86 ~i~v~d~~~   94 (138)
T d1w15a_          86 EFLVLDSER   94 (138)
T ss_dssp             EEEEEECCT
T ss_pred             EEEEEeCCC
Confidence            999999754

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.014  Score=45.09  Aligned_cols=72  Identities=11%  Similarity=0.144  Sum_probs=50.7

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ..+|+|++|.+||..    .+|.||+..+.....  ....|..++++.   .+.|+..  |.+.+...  .    .+..|
T Consensus        16 ~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~---nP~wne~--f~f~v~~~--~----~~~~L   84 (132)
T d1a25a_          16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSL---NPEWNET--FRFQLKES--D----KDRRL   84 (132)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCS---SCEEEEE--EEEECCSG--G----GGCEE
T ss_pred             EEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCC---CCccceE--EEEEeEcc--c----cCCEE
Confidence            478899999999863    578999999865432  356788777773   4568865  55556554  2    34469


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||-+..
T Consensus        85 ~i~V~d~d~   93 (132)
T d1a25a_          85 SVEIWDWDL   93 (132)
T ss_dssp             EEEEEECCS
T ss_pred             eEEEEecCC
Confidence            999997633

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.0098  Score=47.58  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=52.5

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .+.|+|++|.+||..    .+|.||+..+......  ...|...+++   ..+.|++.  |...|+.+  .   +++..|
T Consensus        26 ~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t---~nP~wne~--f~F~v~~~--~---l~~~~l   95 (157)
T d1uowa_          26 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT---LNPYYNES--FSFEVPFE--Q---IQKVQV   95 (157)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC---SSCEEEEE--EEEECCGG--G---GGGCEE
T ss_pred             EEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCC---CCcccCCe--EEEEecHH--H---cCccEE
Confidence            578899999999853    5679999998765443  2357776665   24568876  55567665  3   467789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        96 ~i~v~d~~~  104 (157)
T d1uowa_          96 VVTVLDYDK  104 (157)
T ss_dssp             EEEEEECCS
T ss_pred             EEEEcccCC
Confidence            999999754

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.023  Score=43.17  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=52.3

Q ss_pred             eEEEEEEeeccCCCcc-------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCC
Q psy7271         159 LQFRITVLQAVGISTE-------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQST  231 (305)
Q Consensus       159 ~~FrVtIlqAsGLp~~-------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~  231 (305)
                      -.++|+|++|.+||..       -+|-||...+.........|..++|+.   .+.|+..  |.+.+...       +..
T Consensus         3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~---nP~wne~--f~f~i~~~-------~~~   70 (126)
T d1rlwa_           3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDI---NPVWNET--FEFILDPN-------QEN   70 (126)
T ss_dssp             EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCS---SCEEEEE--EEEEECTT-------SCC
T ss_pred             cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCc---cceecee--eeecccCc-------ccC
Confidence            4689999999999953       357899999977666678888888773   4568765  44444332       345


Q ss_pred             cEEEEEeeccc
Q psy7271         232 SQIYQVWCSPL  242 (305)
Q Consensus       232 ~L~fEVwG~~~  242 (305)
                      .|.|+||-+..
T Consensus        71 ~L~v~V~d~d~   81 (126)
T d1rlwa_          71 VLEITLMDANY   81 (126)
T ss_dssp             EEEEEEEECCS
T ss_pred             cEEEEEEECCC
Confidence            69999998743

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.021  Score=43.87  Aligned_cols=72  Identities=17%  Similarity=0.149  Sum_probs=51.9

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      .++|+|++|.+||..    .+|.||+..+....  .....|+.++++.   .+.|+..  |.+.|+.+  -   +....|
T Consensus        16 ~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~---~P~wne~--f~f~v~~~--~---l~~~~l   85 (137)
T d2cm5a1          16 GLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTL---NPEFNEE--FFYDIKHS--D---LAKKSL   85 (137)
T ss_dssp             EEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCS---SCEEEEE--EEEECCGG--G---GGGCEE
T ss_pred             EEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCC---CCccceE--EEEEeEHH--H---ccccEE
Confidence            478999999999852    56799999986542  2346788888873   4568755  55566655  3   466779


Q ss_pred             EEEEeecc
Q psy7271         234 IYQVWCSP  241 (305)
Q Consensus       234 ~fEVwG~~  241 (305)
                      .|.||.+.
T Consensus        86 ~v~v~~~~   93 (137)
T d2cm5a1          86 DISVWDYD   93 (137)
T ss_dssp             EEEEEECC
T ss_pred             EEEeeeCC
Confidence            99999764

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.015  Score=44.36  Aligned_cols=73  Identities=15%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCc--cceeeCcccCCCCCCCeeeeEEEEEEEe-ecCCccccccccCCc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHD--EAFSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAAPLHPHQSTS  232 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~e--e~fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~fl~yl~~~~  232 (305)
                      .++|+|++|.+||..    .+|.||+..+.....  ....|..++++.   .+.|++.  |+.. ++.+  .   +++..
T Consensus        15 ~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~---~P~wne~--f~f~~~~~~--~---l~~~~   84 (125)
T d2bwqa1          15 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTL---EPKWNQT--FIYSPVHRR--E---FRERM   84 (125)
T ss_dssp             EEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBS---SCEEEEE--EEECSCCGG--G---GGGCE
T ss_pred             EEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCC---CCEEccE--EEEeeeChh--h---cCCCE
Confidence            578999999999853    466999999965432  246788887763   4578866  5543 4444  2   56778


Q ss_pred             EEEEEeeccc
Q psy7271         233 QIYQVWCSPL  242 (305)
Q Consensus       233 L~fEVwG~~~  242 (305)
                      |.|+||.+..
T Consensus        85 L~i~v~d~~~   94 (125)
T d2bwqa1          85 LEITLWDQAR   94 (125)
T ss_dssp             EEEEEEEC--
T ss_pred             EEEEEEECCC
Confidence            9999998654

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.022  Score=44.48  Aligned_cols=73  Identities=15%  Similarity=0.072  Sum_probs=53.3

Q ss_pred             EEEEEEeeccCCCcc-cCceEEEEEeCCCCcc-ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEE
Q psy7271         160 QFRITVLQAVGISTE-YSDIFCQFNFLHRHDE-AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQV  237 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee-~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEV  237 (305)
                      ...|+|++|.+|+.. .+|.||+..++.+... .+.|..++++   ..+.|+..  |...|..+  .   +....|.|+|
T Consensus        27 ~L~V~v~~a~~L~~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~---~~P~wne~--f~f~v~~~--~---l~~~~L~~~V   96 (138)
T d1wfma_          27 ELFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ---LHTTWEEG--LVLPLAEE--E---LPTATLTLTL   96 (138)
T ss_dssp             EEEEEEEEEECCCCSSCCCEEEEEEEEETTEEEEEECCCCCCC---SSEECSSC--EEEECCTT--S---STTCEEEEEE
T ss_pred             EEEEEEEEcCCCCCCCCcCcEEEEEECCCCCccceeeeEECCC---CCceEeee--EEEEeeeh--h---ccceEEEEEE
Confidence            578999999999864 6789999998876442 4567766665   35678765  55556655  3   5677899999


Q ss_pred             eeccc
Q psy7271         238 WCSPL  242 (305)
Q Consensus       238 wG~~~  242 (305)
                      |.+..
T Consensus        97 ~d~~~  101 (138)
T d1wfma_          97 RTCDR  101 (138)
T ss_dssp             EECCS
T ss_pred             eeecc
Confidence            99753

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.04  E-value=0.081  Score=40.61  Aligned_cols=75  Identities=9%  Similarity=0.004  Sum_probs=50.8

Q ss_pred             eeEEEEEEeeccCCCc------ccCceEEEEEeCCCC--ccceeeCcccCCCCCCCeeeeEEEEEEEeecCCcccccccc
Q psy7271         158 ELQFRITVLQAVGIST------EYSDIFCQFNFLHRH--DEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQ  229 (305)
Q Consensus       158 ~~~FrVtIlqAsGLp~------~ysdVFCQy~F~~~~--ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~  229 (305)
                      +..++|+|+.|.+||.      ..+|-||+..+.+.+  +..+.|+.+++++-  ++.|+..  |.+.+...  ..    
T Consensus         3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~--nP~wne~--f~f~~~~~--~~----   72 (131)
T d1qasa2           3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGF--NPRWDME--FEFEVTVP--DL----   72 (131)
T ss_dssp             CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSS--SCEEEEE--EEEEESCG--GG----
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccC--CceEEEE--EEEEEEcc--hh----
Confidence            4568899999999973      246789999986532  34677888876632  4568754  55555444  22    


Q ss_pred             CCcEEEEEeecccc
Q psy7271         230 STSQIYQVWCSPLA  243 (305)
Q Consensus       230 ~~~L~fEVwG~~~~  243 (305)
                       ..|.|+||-+...
T Consensus        73 -~~L~~~V~D~d~~   85 (131)
T d1qasa2          73 -ALVRFMVEDYDSS   85 (131)
T ss_dssp             -CEEEEEEEECCTT
T ss_pred             -ceEEEEEEEecCC
Confidence             3589999987543

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.059  Score=40.95  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|.+|.+|+..    .+|-||...+.+   ..+.|+.++++.   ++.|+..  |.+.+...        ...|.|
T Consensus         7 ~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~---~~~~T~~~~~t~---nP~wne~--f~f~v~~~--------~~~L~i   70 (126)
T d2ep6a1           7 ILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYKNL---NPEWNKV--FTFPIKDI--------HDVLEV   70 (126)
T ss_dssp             EEEEEEEEEESCCCSSSSSCCCEEEEEEETT---EEEECCCCSSCS---SCCCCEE--EEEEESCT--------TCEEEE
T ss_pred             EEEEEEEEeECCCCCCCCCCcCeEEEEEcCC---eEEEEEeeCCce---eEEEEEE--EEEEEecc--------CceeEE
Confidence            589999999999964    457899999854   357788887763   4568865  55555432        236999


Q ss_pred             EEeecc
Q psy7271         236 QVWCSP  241 (305)
Q Consensus       236 EVwG~~  241 (305)
                      +||=+.
T Consensus        71 ~V~d~~   76 (126)
T d2ep6a1          71 TVFDED   76 (126)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            999653

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.52  E-value=0.022  Score=44.51  Aligned_cols=73  Identities=15%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCcc--ceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDE--AFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQ  233 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee--~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L  233 (305)
                      ..+|+|++|.+|+..    .+|.||+..+......  ...|..++++.   .+.|+..  |.+.|+.+  .   ++...|
T Consensus        21 ~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~---~P~wne~--f~F~v~~~--~---~~~~~l   90 (145)
T d1dqva2          21 LLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTL---NPTYNEA--LVFDVAPE--S---VENVGL   90 (145)
T ss_dssp             EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCS---SCEEEEC--CCCCCCSG--G---GGSCCC
T ss_pred             EEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCC---Cceecce--EEEEEehh--h---cCCCEE
Confidence            478999999999863    3469999998865442  34577777763   4578865  44567765  3   567789


Q ss_pred             EEEEeeccc
Q psy7271         234 IYQVWCSPL  242 (305)
Q Consensus       234 ~fEVwG~~~  242 (305)
                      .|+||.+..
T Consensus        91 ~v~v~d~~~   99 (145)
T d1dqva2          91 SIAVVDYDC   99 (145)
T ss_dssp             CCEEEECCS
T ss_pred             EEEEEecCC
Confidence            999998744

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.44  E-value=0.088  Score=40.36  Aligned_cols=68  Identities=10%  Similarity=0.180  Sum_probs=47.5

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      ..+|+|.+|.+|+..    -+|.||.+++-++   ...|..+++.+  .++.|+..  |.+.|++.  .      ..|.|
T Consensus        11 ~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~---~~~t~~~~~~~--~nP~Wne~--f~f~v~~~--~------~~L~v   75 (136)
T d1wfja_          11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMG--TTPEWNET--FIFTVSEG--T------TELKA   75 (136)
T ss_dssp             EEEEEEEEEEECSSCCSSCSSCCCEEEESSSC---EEECCCCTTCC--SSCEEEEE--EEEEEESS--C------CEEEE
T ss_pred             EEEEEEEEeeCCCCCCCCCCCCccEEEEEeee---eEEEEEEecCC--CcEEEeeE--EEEEEcCc--c------ceEEE
Confidence            689999999999963    4569999987543   45566666533  35678865  55556553  1      23999


Q ss_pred             EEeeccc
Q psy7271         236 QVWCSPL  242 (305)
Q Consensus       236 EVwG~~~  242 (305)
                      +||-+..
T Consensus        76 ~V~d~d~   82 (136)
T d1wfja_          76 KIFDKDV   82 (136)
T ss_dssp             EECCSSS
T ss_pred             EEEEecC
Confidence            9998754

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.15  Score=39.24  Aligned_cols=65  Identities=18%  Similarity=0.271  Sum_probs=48.4

Q ss_pred             EEEEEeeccCCCcc--c--CceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEE
Q psy7271         161 FRITVLQAVGISTE--Y--SDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQ  236 (305)
Q Consensus       161 FrVtIlqAsGLp~~--y--sdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fE  236 (305)
                      .+|+|++|.+++..  +  .|.||..++-+   +.+.|+.++++   .++.|+.  .|.+.+++.         ..|.|+
T Consensus         8 L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~t---~nP~wne--~f~f~~~~~---------~~l~~~   70 (133)
T d2nq3a1           8 LQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNNT---NSPKWKQ--PLTVIVTPV---------SKLHFR   70 (133)
T ss_dssp             EEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSSC---SSCEEEE--EEEEEECTT---------CEEEEE
T ss_pred             EEEEEEEeECCCcCCCCCCcCeEEEEEECC---eEEeeEEEEec---ccEEEcc--eEEEEEEec---------ceeEEE
Confidence            58999999999864  3  36999999865   35778877776   3567874  566677654         259999


Q ss_pred             Eeeccc
Q psy7271         237 VWCSPL  242 (305)
Q Consensus       237 VwG~~~  242 (305)
                      ||-+..
T Consensus        71 V~d~d~   76 (133)
T d2nq3a1          71 VWSHQT   76 (133)
T ss_dssp             EEECCS
T ss_pred             EEEccC
Confidence            999754

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.16  E-value=0.055  Score=41.65  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=48.6

Q ss_pred             EEEEEEeeccCCCcc----cCceEEEEEeCCCCccc-----------eeeCcccCCCCCCCeeeeEEEEEEEe-ecCCcc
Q psy7271         160 QFRITVLQAVGISTE----YSDIFCQFNFLHRHDEA-----------FSTEPVKNTGKGTPLGFYHIQNLTSA-TAAHAA  223 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~----ysdVFCQy~F~~~~ee~-----------fsTePvknt~~~~~~~F~hvq~~~V~-VTee~~  223 (305)
                      ..+|+|.+|.|||..    .+|-||+..+.......           ..|+.++++   ..+.|+..  |... ++.+  
T Consensus        19 ~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t---~nP~wne~--f~f~~~~~~--   91 (142)
T d1rh8a_          19 NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS---LNPEWNQT--VIYKSISME--   91 (142)
T ss_dssp             EEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH---HSCEEEEE--EEECSCCHH--
T ss_pred             EEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCC---CCceeEEE--EEEeeeccc--
Confidence            478999999999864    46799999997654432           235555554   24568765  4433 3332  


Q ss_pred             ccccccCCcEEEEEeeccc
Q psy7271         224 PLHPHQSTSQIYQVWCSPL  242 (305)
Q Consensus       224 fl~yl~~~~L~fEVwG~~~  242 (305)
                         -+....|.|+||-+..
T Consensus        92 ---~~~~~~L~i~V~d~d~  107 (142)
T d1rh8a_          92 ---QLMKKTLEVTVWDYDR  107 (142)
T ss_dssp             ---HHTTCEEEEEEEEECS
T ss_pred             ---ccCCCEEEEEEEEecC
Confidence               2567789999998643

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=91.71  E-value=0.54  Score=36.01  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=44.6

Q ss_pred             EEEEEEeeccCCCcc---------------cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccc
Q psy7271         160 QFRITVLQAVGISTE---------------YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAP  224 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~---------------ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~f  224 (305)
                      ..+|+|.+|.+|++.               .+|-||..++-+.  ....|...+++   ..+.|+..  |.+.+++.   
T Consensus         7 ~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~--~~~~T~~~~~t---~~P~Wne~--f~f~v~~~---   76 (136)
T d1gmia_           7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS--RIGQTATKQKT---NSPAWHDE--FVTDVCNG---   76 (136)
T ss_dssp             EEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE--EEEECCCCSSC---SSCEEEEE--EEEEEEEE---
T ss_pred             EEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCC--cCcEeeEEcCC---CCccCccE--EEEEEecC---
Confidence            468999999999852               3468999998432  23456665555   35678865  55555433   


Q ss_pred             cccccCCcEEEEEeeccc
Q psy7271         225 LHPHQSTSQIYQVWCSPL  242 (305)
Q Consensus       225 l~yl~~~~L~fEVwG~~~  242 (305)
                            ..|.|+||-+..
T Consensus        77 ------~~l~i~V~d~~~   88 (136)
T d1gmia_          77 ------RKIELAVFHDAP   88 (136)
T ss_dssp             ------CEEEEEEEECCS
T ss_pred             ------CceEEEEEEecC
Confidence                  248999997643

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.85  E-value=1.3  Score=33.88  Aligned_cols=64  Identities=9%  Similarity=0.062  Sum_probs=44.7

Q ss_pred             EEEEEeeccCCCcc-cCceEEEEEeCCCCccceeeCcccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEEEEee
Q psy7271         161 FRITVLQAVGISTE-YSDIFCQFNFLHRHDEAFSTEPVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIYQVWC  239 (305)
Q Consensus       161 FrVtIlqAsGLp~~-ysdVFCQy~F~~~~ee~fsTePvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~fEVwG  239 (305)
                      ..|+|..|.+|+.. -+|-||..++-+   ....|..++++    ++.|++.  |.+.+.+.        +..|.|+||-
T Consensus         4 L~V~v~~a~~l~~~~~~dpYv~l~~~~---~k~~T~~~k~~----nP~Wne~--f~f~v~~~--------~~~L~v~V~d   66 (128)
T d2cjta1           4 LCVGVKKAKFDGAQEKFNTYVTLKVQN---VKSTTIAVRGS----QPSWEQD--FMFEINRL--------DLGLTVEVWN   66 (128)
T ss_dssp             EEEEEEEEECSSCGGGCEEEEEEEETT---EEEECCCEESS----SCEEEEE--EEEEECCC--------SSEEEEEEEE
T ss_pred             EEEEEEEEECCCCCCCcCeEEEEEeCC---EEEEEEEecCC----CCeEEEE--EEEeeccc--------cceEEEEEEe
Confidence            47999999999965 568999999954   23556666543    4679866  44445432        2369999997


Q ss_pred             cc
Q psy7271         240 SP  241 (305)
Q Consensus       240 ~~  241 (305)
                      +.
T Consensus        67 ~~   68 (128)
T d2cjta1          67 KG   68 (128)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.59  E-value=2.8  Score=31.49  Aligned_cols=73  Identities=11%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             EEEEEEeeccCCCcccCceEEEEEeCCCC---ccceeeC-cccCCCCCCCeeeeEEEEEEEeecCCccccccccCCcEEE
Q psy7271         160 QFRITVLQAVGISTEYSDIFCQFNFLHRH---DEAFSTE-PVKNTGKGTPLGFYHIQNLTSATAAHAAPLHPHQSTSQIY  235 (305)
Q Consensus       160 ~FrVtIlqAsGLp~~ysdVFCQy~F~~~~---ee~fsTe-Pvknt~~~~~~~F~hvq~~~V~VTee~~fl~yl~~~~L~f  235 (305)
                      |.+|+|+.|-.||..=++-|++...++.+   .....|. .+++.+  .++.|+..-.+.+.+...  .+     ..|.|
T Consensus         2 tl~V~Visaq~L~~~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~--~nP~wne~~~~~~~~~~~--~l-----~~L~f   72 (122)
T d2zkmx2           2 TLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNS--INPVWKEEPFVFEKILMP--EL-----ASLRV   72 (122)
T ss_dssp             EEEEEEEEEESCCSSCCCEEEEEEEECCTTSCCCCEECCCCSSSCC--SSCBCCCCCEEEEEESSG--GG-----CEEEE
T ss_pred             EEEEEEEEeeCCCCCCCCcEEEEEEECcCCCCCccEEEEEEEeCCe--ecceEcccEeEEEecCCC--cc-----cEEEE
Confidence            67899999999998878899999987632   2223333 334433  344675422222333332  12     25899


Q ss_pred             EEeecc
Q psy7271         236 QVWCSP  241 (305)
Q Consensus       236 EVwG~~  241 (305)
                      .||-+.
T Consensus        73 ~V~D~d   78 (122)
T d2zkmx2          73 AVMEEG   78 (122)
T ss_dssp             EEEETT
T ss_pred             EEECCC
Confidence            999875

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.77  E-value=0.5  Score=35.81  Aligned_cols=44  Identities=18%  Similarity=0.160  Sum_probs=33.1

Q ss_pred             eEEEEeeeEeecccccccCcceeeeEEcCCCCeeEEEEEEEEEe
Q psy7271          37 FRLVGRAFVYLSNLMYPIPLIQKVAIVNEKGDVKGHLKIAVQIV   80 (305)
Q Consensus        37 ~~lIGrA~VyL~nL~y~V~l~~~V~Ivs~~Gev~G~L~V~V~p~   80 (305)
                      +.+||++.|-|+.|+..-.......-+..+|+.+|.|+|.+.=.
T Consensus        86 d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~  129 (136)
T d1wfja_          86 DDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFK  129 (136)
T ss_dssp             TCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEE
Confidence            45799999999998776555544455567788999988887644