Psyllid ID: psy7288

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MFRVTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST
Secondary Structure (PSIPRED)
cccccccEEEEEEcccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEcccccccHHHHHHHccccccccEEEEEEcccccccEEEEEEccEEccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEccccccHHHccccccccccccccccccccccccccHHHHHccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEcccHHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHccEEEEEEccccccHHHHHHHccccccEEEEEEEEEEEEEccEEEEEcHHHHHHHcHHHHHccHHHcccccccccccccccEEEEcccHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHccccccccHHHccccEEEccHHHHHHccccEEcccHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MFRVTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVkevdvfdsrdetnlrllsrpdlgitfTKIHAWRLTQYSKCVFLDADVLIVQNCDElfdreelsaapdagwpdcfnsgvfvfkpsesTYNALVEFALvngsfddatrqlqkplnmrnlpksffqppstgsrspsvssishsrensadsafgtstitstsssvsggglqiahprahsspaslQQTYASAQQQHQQHLKQRSYDITTVldelgplppgweqartaegQVYYLKGVLFMYTRLQAGLARALaqvpigtpisaeqLAYEDHIHRqhweeghidylgkdsWDNIWKKISQtiepskppaaepsqttsestekkesspptvpevkpaasvepvpvspvpapstppvatptettpapvstptetaaaspvaapvpspttpvespaastpveapaapvdtpvtpvasapptpaetpgapepvpspaapapvetpsvpaeptptaspvqtsqpcast
Flexible Loop (DISEMBL)
mfrvtgtawvtlatndsyALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEvdvfdsrdetnlrllsrpdlgiTFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSrensadsafgtsTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQtiepskppaaepsqttsestekkesspptvpevkpaASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEptptaspvqtsqpcast
Low Complexity Region (SEG)
MFRVTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQppstgsrspsvssishsRENSADSAFgtstitstsssvsgggLQIAHPRAHSSPAslqqtyasaqqqhqqhlkqRSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTrlqaglaralaqVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAepsqttsestekkesspptvpevkpaasvepvpvspvpapstppvatptettpapvstptetaaaspvaapvpspttpvespaastpveapaapvdtpvtpvasapptpaetpgapepvpspaapapvetpsvpaeptptaspvQTSQPCAST
Disordered region (IsUnstruct)
***VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD*************************************************************************************************YDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKIS********************************************************************************************************************************************************************
Disordered Region (DISOPRED)
****TGT*WVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQA************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MFRVTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFF************************SAFGT**************LQIA****************************RSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTI*****************************************************************************************************PVDTPVTPVA**************************************************
Disordered Region (DISPRO)
****TGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYAS****************TTVLDELGPLPPGWEQARTAEGQVYYLKGV************************************RQHWEEGHIDYLGKDSWDNIWKKISQTIEP***************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRVTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
UNIPROTKB|E1BYL9	332	E1BYL9 "Uncharacterized protei	0.320	0.5	0.602	1.1e-56
UNIPROTKB|F1N9J1	332	GYG1 "Uncharacterized protein"	0.312	0.487	0.604	9.9e-56
UNIPROTKB|F1PVC0	333	GYG1 "Uncharacterized protein"	0.320	0.498	0.578	3.3e-55
UNIPROTKB|F1PVB5	331	GYG1 "Uncharacterized protein"	0.312	0.489	0.586	8.8e-55
ZFIN|ZDB-GENE-080723-74	409	gyg2 "glycogenin 2" [Danio rer	0.312	0.396	0.537	1.8e-54
UNIPROTKB|P46976	350	GYG1 "Glycogenin-1" [Homo sapi	0.308	0.457	0.593	3.7e-54
UNIPROTKB|F6QLM5	331	GYG1 "Uncharacterized protein"	0.312	0.489	0.592	6.1e-54
WB|WBGene00012020	300	gyg-2 [Caenorhabditis elegans	0.335	0.58	0.528	6.1e-54
UNIPROTKB|F1SKC4	331	GYG1 "Uncharacterized protein"	0.312	0.489	0.586	9.9e-54
ZFIN|ZDB-GENE-040625-30	321	gyg1b "glycogenin 1b" [Danio r	0.301	0.485	0.596	1.3e-53

UNIPROTKB|E1BYL9 E1BYL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 518 (187.4 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
 Identities = 100/166 (60%), Positives = 121/166 (72%)

Query:     4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
             VT  A+VTLAT+D Y  GALV+  SL+   T   LA+LITP V+  M++ L  VF+ V E
Sbjct:     3 VTDQAFVTLATDDVYCQGALVLGQSLRNHTTSRKLAVLITPEVSSGMRSVLRSVFDEVTE 62

Query:    64 VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
             VD  DS D   L LL RP+LG+TFTK+H W LT YSKCVF+DAD L++ N DELFDREE 
Sbjct:    63 VDALDSADSVRLALLQRPELGVTFTKLHCWTLTHYSKCVFMDADTLVLCNVDELFDREEF 122

Query:   124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             SAAPD+GWPDCFNSGVFVF+PS  TYN L++FA  +GSFD   + L
Sbjct:   123 SAAPDSGWPDCFNSGVFVFRPSLKTYNLLLQFAAEHGSFDGGDQGL 168

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|F1N9J1 GYG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 511 (184.9 bits), Expect = 9.9e-56, Sum P(2) = 9.9e-56
 Identities = 98/162 (60%), Positives = 122/162 (75%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             ++VTLATNDSY  GALV+ +SL++  T   L  LITP V+  M+N L KVF+ V  VD+ 
Sbjct:     5 SFVTLATNDSYVKGALVLGSSLQQSGTTRKLTALITPQVSDPMRNTLEKVFDEVILVDIL 64

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             DS D  +L LL RP+LGIT TK+H W LTQ+SKCVF+DAD +++ N DELF+REELSAAP
Sbjct:    65 DSGDSAHLALLKRPELGITLTKLHCWELTQFSKCVFMDADTMVLSNIDELFEREELSAAP 124

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             D GWPDCFNSGVFV++PS  TYN L++FA   GSFD A + L
Sbjct:   125 DPGWPDCFNSGVFVYRPSIETYNQLLQFATEKGSFDGADQGL 166

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|F1PVC0 GYG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 498 (180.4 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
 Identities = 96/166 (57%), Positives = 121/166 (72%)

Query:     4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
             +T  A+VTL TND+YA GALV+ +SLK+  T   LA+L TP V+ +M+  L  VF+ V  
Sbjct:     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRKLAVLATPQVSDSMRKVLETVFDEVIT 60

Query:    64 VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
             VDV DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REEL
Sbjct:    61 VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREEL 120

Query:   124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             SAAPD GWPDCFNSGVFV++PS  TYN L+  A   GSFD   + L
Sbjct:   121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGL 166

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

UNIPROTKB|F1PVB5 GYG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 494 (179.0 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
 Identities = 95/162 (58%), Positives = 119/162 (73%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             A+VTL TND+YA GALV+ +SLK+  T   LA+L TP V+ +M+  L  VF+ V  VDV 
Sbjct:     3 AFVTLTTNDAYAKGALVLGSSLKQHRTTRKLAVLATPQVSDSMRKVLETVFDEVITVDVL 62

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REELSAAP
Sbjct:    63 DSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAP 122

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             D GWPDCFNSGVFV++PS  TYN L+  A   GSFD   + L
Sbjct:   123 DPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGL 164

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

ZFIN|ZDB-GENE-080723-74 gyg2 "glycogenin 2" [Danio rerio (taxid:7955)]

 Score = 471 (170.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
 Identities = 87/162 (53%), Positives = 120/162 (74%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             A+VTLAT D+Y++G +VV  SL+R  T   + ++++P V+ + +  L  +F+ V  VDV 
Sbjct:     6 AFVTLATTDAYSMGCIVVGKSLRRHGTSRKIVVMVSPNVSRSARLALEDIFDEVFVVDVL 65

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             DS+D+ +L  L RP+LG+TFTK+H W LTQYSKCVFLDAD L++ N DELF+ EELSAAP
Sbjct:    66 DSKDKAHLAWLGRPELGVTFTKLHCWTLTQYSKCVFLDADTLVLCNVDELFEYEELSAAP 125

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             D GWPDCFN+GVFVF+PS +T+  ++E A  +GSFD   + L
Sbjct:   126 DPGWPDCFNTGVFVFRPSLNTHTQILEHAAQHGSFDGGDQGL 167

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P46976 GYG1 "Glycogenin-1" [Homo sapiens (taxid:9606)]

 Score = 495 (179.3 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 95/160 (59%), Positives = 118/160 (73%)

Query:     4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
             +T  A+VTL TND+YA GALV+ +SLK+  T   L +L TP V+ +M+  L  VF+ V  
Sbjct:     1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 60

Query:    64 VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
             VDV DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LFDREEL
Sbjct:    61 VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREEL 120

Query:   124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163
             SAAPD GWPDCFNSGVFV++PS  TYN L+  A   GSFD
Sbjct:   121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFD 160

GO:0046872 "metal ion binding" evidence=IEA

GO:0008466 "glycogenin glucosyltransferase activity" evidence=IEA

GO:0005536 "glucose binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0005980 "glycogen catabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F6QLM5 GYG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 493 (178.6 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 96/162 (59%), Positives = 118/162 (72%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             A+VTL TNDSYA GALV+  SLK+  T   L +LITP V+ +M+  L  VF+ V  VDV 
Sbjct:     3 AFVTLTTNDSYAKGALVLGLSLKQHRTTRRLVVLITPQVSDSMRKALETVFDEVIMVDVL 62

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REELSAAP
Sbjct:    63 DSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAP 122

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             D GWPDCFNSGVFV++PS  TYN L+  A   GSFD   + L
Sbjct:   123 DPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGL 164

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

WB|WBGene00012020 gyg-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 473 (171.6 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 93/176 (52%), Positives = 119/176 (67%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             AW+TLATND YA GAL + NSL    T   +  LIT  ++ +++ +L+  F+ V  VD+F
Sbjct:     4 AWITLATNDRYAQGALTLLNSLHASGTTRRIHCLITNEISNSVREKLVNKFDEVTVVDIF 63

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             +S D  NL L+ RPDLG+TFTK H WRLTQYSK VFLDAD +I++N DELF+R + SAA 
Sbjct:    64 NSNDSENLSLIGRPDLGVTFTKFHCWRLTQYSKAVFLDADTMIIRNSDELFERPDFSAAA 123

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPL--NMRNLPKS 181
             D GWPD FNSGVFVF PS + Y AL+  A  +GSFD   + L      N R+LP +
Sbjct:   124 DIGWPDMFNSGVFVFTPSLTVYRALLSLATSSGSFDGGDQGLLNEYFSNWRDLPSA 179

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=IEA

UNIPROTKB|F1SKC4 GYG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 492 (178.3 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 95/162 (58%), Positives = 119/162 (73%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             A+VTL TND+YA GALV+ +SLK+  T   L +LITP V+ +M+  L  VF+ V  VDV 
Sbjct:     3 AFVTLTTNDAYAKGALVLGSSLKQHRTSRRLVVLITPQVSDSMRKTLETVFDEVIVVDVL 62

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REELSAAP
Sbjct:    63 DSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAP 122

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQL 169
             D GWPDCFNSGVFV++PS  TYN L+  A   GSFD   + L
Sbjct:   123 DPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGL 164

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

ZFIN|ZDB-GENE-040625-30 gyg1b "glycogenin 1b" [Danio rerio (taxid:7955)]

 Score = 488 (176.8 bits), Expect = 1.3e-53, Sum P(2) = 1.3e-53
 Identities = 93/156 (59%), Positives = 114/156 (73%)

Query:     8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
             A+VTLATNDSYA GA+V+  SLK   T   L +LI P V+   +  L  +++ V+ VDV 
Sbjct:     6 AFVTLATNDSYARGAMVLGKSLKNHKTSKKLVVLIGPHVSDQSRAVLHNIYDEVRLVDVL 65

Query:    68 DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
             DS D  +L ++ RPDLG+TFTK+H W LT YSKCVF+DAD L+V N DELFDREELSAAP
Sbjct:    66 DSGDAAHLAMMKRPDLGVTFTKLHCWTLTHYSKCVFMDADTLVVSNIDELFDREELSAAP 125

Query:   128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163
             D GWPDCFNSGVFVF PS  TY  L+++   +GSFD
Sbjct:   126 DPGWPDCFNSGVFVFCPSNETYGKLLQYCTQHGSFD 161

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.1.186	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	518
cd02537	240	cd02537, GT8_Glycogenin, Glycogenin belongs the GT	3e-73
pfam01501	248	pfam01501, Glyco_transf_8, Glycosyl transferase fa	5e-39
cd00505	246	cd00505, Glyco_transf_8, Members of glycosyltransf	1e-20
cd06914	278	cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be	9e-15
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	2e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-13
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	9e-13
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-12
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-11
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	4e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	5e-11
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-11
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	9e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	1e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-10
cd04194	248	cd04194, GT8_A4GalT_like, A4GalT_like proteins cat	4e-10
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	5e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-10
COG5597	368	COG5597, COG5597, Alpha-N-acetylglucosamine transf	8e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-09
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-09
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	3e-09
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	3e-09
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-09
PLN00176	333	PLN00176, PLN00176, galactinol synthase	4e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-09
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-09
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-08
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-08
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	9e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-07
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	3e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-07
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	4e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-07
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	8e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-06
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	2e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	2e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	2e-06
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	4e-06
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	4e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-06
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	6e-06
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	6e-06
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	7e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-05
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	1e-05
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	1e-05
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	2e-05
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	2e-05
PHA03379	935	PHA03379, PHA03379, EBNA-3A; Provisional	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-05
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	3e-05
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	3e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	3e-05
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	3e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	4e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	4e-05
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	5e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	5e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	5e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	5e-05
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	6e-05
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	6e-05
PRK14949	944	PRK14949, PRK14949, DNA polymerase III subunits ga	7e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	8e-05
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	8e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	9e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	9e-05
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	1e-04
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	1e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	2e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	2e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	3e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	3e-04
PRK11907	814	PRK11907, PRK11907, bifunctional 2',3'-cyclic nucl	3e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	3e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	3e-04
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	3e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	3e-04
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	4e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	4e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	4e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	4e-04
COG3266	292	COG3266, DamX, Uncharacterized protein conserved i	4e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-04
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	5e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	5e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	6e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	6e-04
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	6e-04
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	7e-04
pfam05104	151	pfam05104, Rib_recp_KP_reg, Ribosome receptor lysi	7e-04
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	8e-04
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	8e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	9e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	9e-04
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	9e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.001
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.001
COG1426	284	COG1426, COG1426, Predicted transcriptional regula	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PRK10672	361	PRK10672, PRK10672, rare lipoprotein A; Provisiona	0.001
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.002
pfam05109	830	pfam05109, Herpes_BLLF1, Herpes virus major outer	0.002
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.002
TIGR02813	2582	TIGR02813, omega_3_PfaA, polyketide-type polyunsat	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
PRK10905	328	PRK10905, PRK10905, cell division protein DamX; Va	0.002
PRK14666	694	PRK14666, uvrC, excinuclease ABC subunit C; Provis	0.002
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.002
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
pfam05104	151	pfam05104, Rib_recp_KP_reg, Ribosome receptor lysi	0.003
PRK10118	408	PRK10118, PRK10118, flagellar hook-length control	0.003
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	0.003
COG3147	226	COG3147, DedD, Uncharacterized protein conserved i	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.004
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.004
TIGR02813	2582	TIGR02813, omega_3_PfaA, polyketide-type polyunsat	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	0.004

>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

 Score =  231 bits (592), Expect = 3e-73
 Identities = 81/159 (50%), Positives = 104/159 (65%), Gaps = 3/159 (1%)

Query: 8   AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
           A+VTL TND Y  GALV+  SL++V + +DL +L+TPGV+   +  L +V   V+EV+  
Sbjct: 2   AYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPI 61

Query: 68  DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE-ELSAA 126
           D  D  NL  L RP    T+TK+  W LT+Y K VFLDAD L+++N DELFD   E +AA
Sbjct: 62  DPPDSANL--LKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAA 119

Query: 127 PDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDA 165
           PD GWPD FNSGVFV KPSE T+N L++      SFD  
Sbjct: 120 PDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGG 158

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240

>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8

 Score =  142 bits (359), Expect = 5e-39
 Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 31/198 (15%)

Query: 9   WVTLATNDSYALGALVVANSLKRVNT--VHDLAILITPGVTLAMKNELLKVFNFVKEVDV 66
            + LA +D+Y LGA V+  SL   N+  +H L  ++T  V+   + +L  + + V EVDV
Sbjct: 1   VIVLALDDNYVLGAGVLIKSLLLHNSDPLHLLFHILTDDVSEENREKLNALGSQVSEVDV 60

Query: 67  FDSRDETNLR------LLSRPDLGITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFD 119
            +  D   L       LL +    + + +++   L  +Y K ++LDAD++++ + DELFD
Sbjct: 61  LEFSDIEMLSYLTLQLLLKKYWSLLNYARLYLADLFPKYDKILYLDADIIVLGDLDELFD 120

Query: 120 R--------------------EELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVN 159
                                E LSA      P  FN+GV V    +     L E  +  
Sbjct: 121 IDLGGKVAAAVEDFDRYPWFKEALSAELGIPPPCYFNAGVLVINLKKWREENLTEKLIEW 180

Query: 160 GSFDDATRQL--QKPLNM 175
            + +    +L  Q  LN+
Sbjct: 181 LNKNGGLLKLGDQDILNI 198

This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. Length = 248

>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 71/240 (29%), Positives = 99/240 (41%), Gaps = 48/240 (20%)

Query: 8   AWVTLATNDSYALGALVVANSLKR--VNTVHDLAILITPGVTLAMKNEL---LKVFNFVK 62
           A V +AT D Y  GA+V+  S+ R     +    +L T  ++   K  L    K++NF  
Sbjct: 2   AIVIVATGDEYLRGAIVLMKSVLRHRTKPLR-FHVL-TNPLSDTFKAALDNLRKLYNFNY 59

Query: 63  EVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQ-YSKCVFLDADVLIVQNCDELFDR- 120
           E+   D  D  +   L RP   +T TK+H   L   Y K +++DAD+L++ + DEL+D  
Sbjct: 60  ELIPVDILDSVDSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTP 119

Query: 121 ---EELSAAPDAGWP----------------DCFNSGVFVFKPSESTYNAL-------VE 154
              +EL+AAPD G                  D FNSGVFV   S+   N L         
Sbjct: 120 LGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWL 179

Query: 155 FALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPS---VSSISHSRENSADSAFG 211
            +L + S  D     Q  LN       F Q P      P    V      R  +   AF 
Sbjct: 180 QSLSSLSGGD-----QDLLN-----TFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFV 229

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. Length = 246

>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family

 Score = 74.4 bits (183), Expect = 9e-15
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 8   AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
           A+V  ATN  Y   AL++   L+R+ +   L +L+    TL  +N      +     D+ 
Sbjct: 2   AYVNYATNADYLCNALILFEQLRRLGSKAKLVLLVPE--TLLDRNL-----DDFVRRDLL 54

Query: 68  DSRDETNLRLLSRPDLGIT-------FTKIHAWRLTQYSKCVFLDADVLIVQNCDELFD- 119
            +RD+  ++L+                TK+ A+  T+Y + ++ D+D +I    DELF  
Sbjct: 55  LARDKVIVKLIPVIIASGGDAYWAKSLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFL 114

Query: 120 REELS-AAPDAGWPDCFNSGVFVFKPSESTYNALVEFAL 157
              +  AAP A W   F S + V KPS+  +  L+   L
Sbjct: 115 PNYIKFAAPRAYWK--FASHLMVIKPSKEAFKELMTEIL 151

N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. Length = 278

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 75.8 bits (187), Expect = 2e-14
 Identities = 41/165 (24%), Positives = 52/165 (31%), Gaps = 9/165 (5%)

Query: 363  PAAEPSQTTSESTEKKE--SSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVATPTETTPA 419
            P   P     E   + E     P V EV  AA+VEPV  +P V A +           P 
Sbjct: 846  PVVRPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905

Query: 420  PVST-PTETAAASPVAAPVPSPTTPVESPAASTPVE-----APAAPVDTPVTPVASAPPT 473
            P      ET     +AAPV      +     +   E      P          +  A  T
Sbjct: 906  PEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAET 965

Query: 474  PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
                   PE V  PAAP   E  +     T     V  +Q   +T
Sbjct: 966  AEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010

Length = 1068

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 41/156 (26%), Positives = 51/156 (32%), Gaps = 6/156 (3%)

Query: 359  PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
            P  PP  EP+     S       P    +  PA    P P +    P+TP         P
Sbjct: 2702 PPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPP 2761

Query: 419  APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
                 P     A+P A P    T P  +  + +    P+        P A   P  A  P
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADP-PAAVLAPAAALPP 2820

Query: 479  GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
             A     SPA P P  T + P  P P   P   S P
Sbjct: 2821 AA-----SPAGPLPPPTSAQPTAPPPPPGPPPPSLP 2851

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 70.6 bits (173), Expect = 9e-13
 Identities = 39/172 (22%), Positives = 54/172 (31%), Gaps = 15/172 (8%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
           P++   A P+     +     S+ P V  V  AA     P +   A +T   A P    P
Sbjct: 373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAP 432

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
              +   + AA      P  +      + A S   E  A P     +  A A   P +  
Sbjct: 433 PATADRGDDAADGDAPVPAKAN---ARASADSRCDERDAQPPADSGSASAPASDAPPDAA 489

Query: 479 GAPEP------------VPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
             P P            VP   APA       PA   P A   +   P A+ 
Sbjct: 490 FEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 67.4 bits (165), Expect = 8e-12
 Identities = 39/129 (30%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 361 KPPAAEPSQTTSE-STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
           KP AA  +   +E  T  +  +          A+  P P +   A ++ P A P    PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT-PVTPVASAPPTPAETP 478
           PV+ P   AA +   A  P+      +P A    E  A PV   P   VASA P PA  P
Sbjct: 425 PVAAP-AAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAP 483

Query: 479 GAPEPVPSP 487
            A    P+ 
Sbjct: 484 AAARLTPTE 492

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 36/124 (29%), Positives = 42/124 (33%), Gaps = 1/124 (0%)

Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
           KPAA+ E    +    P+ P  A P     A  +     AAA   AA  P+       PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
                 A A        P A A         APE V  P   AP E     A P P A+P
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP-EPAVASAAPAPAAAP 483

Query: 509 VQTS 512
               
Sbjct: 484 AAAR 487

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
            A        +   A +  P A P     AP +      AA+P  AP P+P     SPA 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 450 STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
           + P     +P   P     SA P PA             AP     P+         +  
Sbjct: 447 NAPAGGAPSP---PPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Query: 510 QTSQPCAS 517
             +   A+
Sbjct: 504 AGADDAAT 511

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 31/130 (23%), Positives = 41/130 (31%), Gaps = 4/130 (3%)

Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
           K  ++       +      P   +P  AP     A P        +     A A+P AA 
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAAS---APAAPPAAA 421

Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA-APAPVET 495
            P+P     + A +    A  A V     P A A P     P    P P+ A A      
Sbjct: 422 PPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

Query: 496 PSVPAEPTPT 505
               A  TPT
Sbjct: 482 APAAARLTPT 491

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.3 bits (160), Expect = 4e-11
 Identities = 24/137 (17%), Positives = 34/137 (24%), Gaps = 6/137 (4%)

Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA---- 435
             PP       +A     P + V  P  P V  P  + P            S + A    
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428

Query: 436 --PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
                  T   +S  A+     P       +  V  AP    + P   E     A     
Sbjct: 429 LQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVE 488

Query: 494 ETPSVPAEPTPTASPVQ 510
                 A P      ++
Sbjct: 489 VKKEPVATPKALKKALE 505

Length = 647

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 64.9 bits (158), Expect = 5e-11
 Identities = 33/147 (22%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
           A  P Q+   +     ++ P       AA+      +P   P+ P  A         V+ 
Sbjct: 362 AFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAA 421

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA-PVDTPVTPVASAPPTPAETPGAPE 482
                + +P A       +      A  P  APAA P        A   P  A    AP 
Sbjct: 422 APARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPA 481

Query: 483 PVPSPAAPAPVETPSVPAEPTPTASPV 509
                AAPAP +    P E  P     
Sbjct: 482 RAAPAAAPAPADDDPPPWEELPPEFAS 508

Length = 700

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 64.5 bits (158), Expect = 6e-11
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
           P +P+P P  PP +             +  A A+P AA  P     V  P AS P +APA
Sbjct: 361 PAAPLPEPEVPPQSAA--------PAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPA 412

Query: 458 APVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            P+    + + +A        GA       PAA +     +   E   +  P  ++  
Sbjct: 413 VPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE 470

Length = 647

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 64.3 bits (157), Expect = 9e-11
 Identities = 30/163 (18%), Positives = 43/163 (26%), Gaps = 12/163 (7%)

Query: 355  QTIEPSKPPAAEP----SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
            Q  E  +    +     ++    +  +   S P V  V      EPV V+         V
Sbjct: 854  QVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-AEVVEEPVVVAEPQPEEVVVV 912

Query: 411  ATPTETTPAPVSTP--TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
             T   T P  ++ P   +    +     V         P      E            V 
Sbjct: 913  ET---THPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVV 969

Query: 469  SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
             A P     P    PV +  A       +V  E  P   P  T
Sbjct: 970  VAEPEVVAQP--AAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010

Length = 1068

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 64.6 bits (157), Expect = 1e-10
 Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 19/173 (10%)

Query: 360  SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPV--PVSPVPAPSTP-PVATPTET 416
            ++P  A  S++        + + P    + PAA++ P   P  P+P P++  P A P   
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPP 2843

Query: 417  TPAPVSTPTETAAA--------SPVAAPVPSPTTP-------VESPAASTPVEAPAAPVD 461
             P P S P   + A         P  +P   P  P       +  PA S   E+ A P D
Sbjct: 2844 GPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPD 2903

Query: 462  TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
             P  P     P P +    P P P P  P P   P       PT  P    +P
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQP-QPPPPPPPRPQPPLAPTTDPAGAGEP 2955

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 64.6 bits (157), Expect = 1e-10
 Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 20/173 (11%)

Query: 356  TIEPSKPPAAEPSQTTSESTEKKESSPPT----VPEVKPAASVEPVPVSPV---PAPSTP 408
            T EP+       +         +++SP       P   PA    P   +     P  + P
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGP 2766

Query: 409  PVATPTE---TTPAPVSTPTETAAASPVAAPVPSPTTPVESPA-------ASTPVEAPAA 458
            P   P       P    T    A+ S     +PSP  P + PA       A  P  +PA 
Sbjct: 2767 PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Query: 459  PVDTPVTPVASAPPTPAETPGAPEPVP---SPAAPAPVETPSVPAEPTPTASP 508
            P+  P +   +APP P   P    P+    +P        PS      P A  
Sbjct: 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPA 2879

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.9 bits (156), Expect = 1e-10
 Identities = 38/163 (23%), Positives = 52/163 (31%), Gaps = 6/163 (3%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVP---EVKPAASVEPVPVSPVPAPSTPPVATPT 414
            P+ P A  P+   +   E   +  P V          +V          P+    A P 
Sbjct: 620 APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPA 679

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA---P 471
              PAP        A +  A P P+P     +  A  P   P         P  +A    
Sbjct: 680 APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPV 739

Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
           P P E    P+P  +PA P P   P+  A P     P   S+ 
Sbjct: 740 PLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 26/121 (21%), Positives = 37/121 (30%), Gaps = 2/121 (1%)

Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
           + V+           +     PA    P   A A+  A    +   P  +PA +    +P
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
           A        P       P+  P            AP   P  PA P P A+P   + P A
Sbjct: 445 AGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAP--PAAPAPAAAPAAPAAPAA 502

Query: 517 S 517
            
Sbjct: 503 P 503

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 31/139 (22%), Positives = 42/139 (30%)

Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
           E+ E            A+  P   +  PA +  P A       AP        A +P  A
Sbjct: 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA 438

Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
           P P           +      AAP   P    A+AP   A    AP   P+PAA      
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498

Query: 496 PSVPAEPTPTASPVQTSQP 514
                     A+ ++   P
Sbjct: 499 APAAPAGADDAATLRERWP 517

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.3 bits (155), Expect = 1e-10
 Identities = 24/155 (15%), Positives = 43/155 (27%), Gaps = 7/155 (4%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPV---SPVPAPSTPPVA--- 411
           EP  PP +     ++++T    ++                P    +     +T  +    
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAAR 426

Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
              +             AA+  A PV S    + S   + P     AP         +  
Sbjct: 427 QQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPA-PSALEKAPAKKEAYRWKATN 485

Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
           P   +      P     A    +TP + A+    A
Sbjct: 486 PVEVKKEPVATPKALKKALEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.4 bits (154), Expect = 1e-10
 Identities = 34/167 (20%), Positives = 52/167 (31%), Gaps = 7/167 (4%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS-------PVPAPSTPPVA 411
            + P AA  ++  + +  ++  +P  +   + A++  P             PA +  P A
Sbjct: 407 AAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA 466

Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
                  A  +     AA +   AP      P E         APA P   P   VA + 
Sbjct: 467 AGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESI 526

Query: 472 PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
           P PA             APA    P   A   P  +P       +  
Sbjct: 527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGL 573

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 37/168 (22%), Positives = 48/168 (28%), Gaps = 9/168 (5%)

Query: 359  PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPV-PVSPVPAPSTPPVATPTETT 417
               PP   PS   +E       + P     +   +   V              A+     
Sbjct: 2623 APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQR 2682

Query: 418  PAPVSTPTETAAASPVAAPVPSPTTPVESPAAST--------PVEAPAAPVDTPVTPVAS 469
            P   +      + + +A P P P TP  +P A          P  A  A    P  P   
Sbjct: 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742

Query: 470  APPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
            A P    TPG P     P   A    P+ PA P        T    AS
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 41/160 (25%), Positives = 52/160 (32%), Gaps = 8/160 (5%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
           P AA P+     +     ++ P       A +  P   SP P              P   
Sbjct: 392 PAAAAPAPAAPPAAP---AAAPAAAAAARAVAAAPARRSPAPEALAAARQASARG-PGGA 447

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG-- 479
             P    AA+P AA  P+   P    AA+    A AAP   P  P    PP   E P   
Sbjct: 448 PAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPA-PADDDPPPWEELPPEF 506

Query: 480 -APEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
            +P P    AAPA     S+P   T        +   A  
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPA 546

Length = 700

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 62.0 bits (151), Expect = 4e-10
 Identities = 31/118 (26%), Positives = 39/118 (33%), Gaps = 1/118 (0%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
             K   A P      +    +++    P   PAA+       P  AP   PVA P    P
Sbjct: 376 AEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPP-APVAAPAAAAP 434

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
           A        A A   A P  +    V  P    P  A A+    P    A+A  TP E
Sbjct: 435 AAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface

 Score = 59.9 bits (146), Expect = 4e-10
 Identities = 41/167 (24%), Positives = 62/167 (37%), Gaps = 48/167 (28%)

Query: 12  LATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMK---NELLKVFN------FV 61
            A +D+YA    V   S+   N+  D    ++   ++   K    ELLK +N       +
Sbjct: 5   FAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKI 64

Query: 62  KEVDVFDSRDETN-------LRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNC 114
              D       T+        RLL  PDL           L  Y K ++LDAD++++ + 
Sbjct: 65  DNDDFKFFPATTDHISYATYYRLLI-PDL-----------LPDYDKVLYLDADIIVLGDL 112

Query: 115 DELFDRE----ELSAAPDAGWPDC---------------FNSGVFVF 142
            ELFD +     L+A  D                     FNSGV + 
Sbjct: 113 SELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVLLI 159

The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS. Length = 248

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 35/154 (22%), Positives = 41/154 (26%), Gaps = 13/154 (8%)

Query: 354  SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVAT 412
            +  +E       EP        E +      V    P     PV   P V   S   VA 
Sbjct: 885  APVVEAVAEVVEEPVVVA----EPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQ 940

Query: 413  PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
                   PV  P +  A    AA         E    + P     A V   V  V +  P
Sbjct: 941  EVAEHAEPVVEPQDETADIEEAAETA-EVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEP 999

Query: 473  TPAETPGAPEPV-------PSPAAPAPVETPSVP 499
              A        V       P   APAP   P  P
Sbjct: 1000 EVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAP 1033

Length = 1068

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 61.9 bits (150), Expect = 5e-10
 Identities = 40/171 (23%), Positives = 52/171 (30%), Gaps = 21/171 (12%)

Query: 359  PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV------PAPSTPPVAT 412
            P+    + P +        + SSPP  P  + AA      V  +      P P   P   
Sbjct: 2656 PAPGRVSRPRRARRLGRAAQASSPPQRPR-RRAA---RPTVGSLTSLADPPPPPPTPEPA 2711

Query: 413  PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
            P     A   TP     A+   A    P  P      + P   P  P      P  + PP
Sbjct: 2712 PHALVSA---TPLPPGPAAARQASPALPAAPAPPAVPAGPA-TPGGPARPARPPTTAGPP 2767

Query: 473  TPAETPGAPEPVPSPAAPAP------VETPSVPAEPTPTASPVQTSQPCAS 517
             PA  P AP   P      P          S+P+   P   P     P A+
Sbjct: 2768 APA-PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817

Length = 3151

>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]

 Score = 60.3 bits (146), Expect = 8e-10
 Identities = 50/169 (29%), Positives = 74/169 (43%), Gaps = 24/169 (14%)

Query: 7   TAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVF-------- 58
            A VTL TN  YALG       +    T   + +L T G T A   E+L +         
Sbjct: 60  HALVTLVTNGDYALGNRATLRDIYLNRTRALVVVLKTGGETKAKLVEVLTMKGCDLWKTD 119

Query: 59  ---------NFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVL 109
                      V+ ++V +    T             FTK+  +  T+Y + +FLD+D +
Sbjct: 120 LLPLDGAFNARVQRINVHEVVPFTKDIKPDFHRWLDMFTKLRVFEQTEYDRVIFLDSDAI 179

Query: 110 IVQNCDELFD--REELSAAPDA-GWPDCF---NSGVFV-FKPSESTYNA 151
           +++N D+LFD    E +AAPD    P  F   NSG+FV F P+ + Y  
Sbjct: 180 VLKNMDKLFDYPVYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYGK 228

Length = 368

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.7 bits (147), Expect = 1e-09
 Identities = 46/173 (26%), Positives = 62/173 (35%), Gaps = 22/173 (12%)

Query: 359  PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
            P+ P A  P + T  +      S  ++P      +  P  V   PA + PP A+P    P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLP-SPWDPADPPAAVLA-PAAALPPAASPAGPLP 2829

Query: 419  APVSTPTETAAASPVAAPVPSPTTPVES-----------PAASTPVEAPAAPVDTPVTPV 467
             P    +    A P     P P+ P+             P + +P   PAAP   PV  +
Sbjct: 2830 PP---TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRL 2886

Query: 468  ASAPPTP-----AETPGAPEPVPSPAAPA-PVETPSVPAEPTPTASPVQTSQP 514
            A    +      A  P  PE  P P AP  P   P  P  P P   P    +P
Sbjct: 2887 ARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.0 bits (145), Expect = 2e-09
 Identities = 35/160 (21%), Positives = 47/160 (29%), Gaps = 1/160 (0%)

Query: 360  SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
              PP+  P  T +        SP             P P  P   P+   V+ P      
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 420  PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
              +    +    P           + S A   P      P    +      PP PA    
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 480  APEPVP-SPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
            A   +P +PA PA    P+ P  P   A P  T+ P A  
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 27/156 (17%), Positives = 43/156 (27%), Gaps = 7/156 (4%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV---PAPSTPPV 410
           +  +              +    K  ++        P A+  P   +      A    PV
Sbjct: 393 ASAVPAVTAVTGAAG---AALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPV 449

Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
                   A   +  +   A P A    +     ++P  +    AP A   +  TP A  
Sbjct: 450 PAKANA-RASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP 508

Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
                      +   + A PAP   P  PA   P A
Sbjct: 509 DARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.5 bits (145), Expect = 3e-09
 Identities = 28/134 (20%), Positives = 39/134 (29%), Gaps = 7/134 (5%)

Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
           P   V P   +P  +       T     P   + P   A+A   A  VP P T  +  AA
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 450 STPVEAPAAPVDTPVT-PVASAPPTPAE------TPGAPEPVPSPAAPAPVETPSVPAEP 502
              ++          + P A++   P            P P     APA  E     A  
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATN 485

Query: 503 TPTASPVQTSQPCA 516
                    + P A
Sbjct: 486 PVEVKKEPVATPKA 499

Length = 647

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPV----EAPAAPVD 461
           +T      TE  PA V+TP E          VP P       AA+       +APA P  
Sbjct: 99  ATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRA 158

Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
               P A A P P ET  A +   + AAP P          TP     + 
Sbjct: 159 KSPRPAAKAAPKPTETITAKKAKKTAAAPKPTA----DKTATPAKKTTKK 204

Length = 209

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 34/127 (26%), Positives = 43/127 (33%), Gaps = 5/127 (3%)

Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETT-PAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
           PA +       P PA + P  A P     PA  +     AAA+   A  P+  +P     
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433

Query: 449 ASTPVEAPAAPVDTPVTPVASAP-PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
           A+    +   P   P    A A  P  A  P A  P P  AA A        A P    +
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA---APARAAPAAAPA 490

Query: 508 PVQTSQP 514
           P     P
Sbjct: 491 PADDDPP 497

Length = 700

>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 47/187 (25%)

Query: 8   AWVT-LATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVD- 65
           A+VT LA N  Y  G + +A  L++V + + L + + P V    +  L+     V+E++ 
Sbjct: 24  AYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEP 83

Query: 66  VFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE---- 121
           V+   ++T     +     I ++K+  W   +YSK ++LD D+ + +N D LFD      
Sbjct: 84  VYPPENQTQF---AMAYYVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYF 140

Query: 122 ----------------------------------ELSAAPDAGWPDCFNSGVFVFKPSES 147
                                             EL   P    P  FN+G+FVF+PS S
Sbjct: 141 YAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELGPPP----PLYFNAGMFVFEPSLS 196

Query: 148 TYNALVE 154
           TY  L+E
Sbjct: 197 TYEDLLE 203

Length = 333

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 28/99 (28%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA----PVSTPTETAAASPVAAPV 437
           P   P+     +  P PV P PAPST P A      P       +         PVA PV
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
           P      ES    T    P         P  + P  P E
Sbjct: 422 P---HTPESAPKLTRAAIPV-----DEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 58.7 bits (143), Expect = 5e-09
 Identities = 25/82 (30%), Positives = 32/82 (39%)

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
           P   + PT  AAA+  AA  P+     ++PAA  P    AA    P  P A+A    A  
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 478 PGAPEPVPSPAAPAPVETPSVP 499
                   +  A A VE    P
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.5 bits (142), Expect = 6e-09
 Identities = 31/144 (21%), Positives = 40/144 (27%), Gaps = 4/144 (2%)

Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
                +     P    +   E       PA    P A          + P E +AA    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAAR---PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 435 APVPSPT-TPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
              P      V  P AS   +   A             P PA         P+  APAP 
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 494 ETPSVPAEPTPTASPVQTSQPCAS 517
            TP       P A P Q +Q  ++
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASA 730

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.5 bits (139), Expect = 9e-09
 Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 4/105 (3%)

Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS-PVAAPVPSPTTPVESPA-- 448
           A + PVP  P PA  T    +P   TPAP + P   AAA+ P   PV    TP   P   
Sbjct: 358 ALLVPVPA-PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416

Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
            + PV                    P  TP AP      A  A  
Sbjct: 417 VAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADG 461

Length = 585

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 25/127 (19%), Positives = 32/127 (25%), Gaps = 4/127 (3%)

Query: 390 PAASVEPVPVSPVPAPS--TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESP 447
           P   V       VPAP          +        T    AA +P AA   + T     P
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP 427

Query: 448 AASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
           AA  P        D          P  A    + +         P       + P   A 
Sbjct: 428 AAPAPPATADRGDDAADGDAPV--PAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

Query: 508 PVQTSQP 514
           P    +P
Sbjct: 486 PDAAFEP 492

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 33/150 (22%), Positives = 43/150 (28%), Gaps = 3/150 (2%)

Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
               P     E      SS P     +PAA   P   +                 PAP  
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE 482
              E          VP  +   +   A     APAAP   P     +AP   A    AP 
Sbjct: 648 AAPEHHPK---HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 483 PVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
           P  +P A    +  + P +    AS    +
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Length = 824

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 26/104 (25%), Positives = 40/104 (38%)

Query: 368 SQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTET 427
            Q+++E ++    S P         +  P P +PV    T        T PAP   P + 
Sbjct: 148 DQSSAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQN 207

Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
           A  +P  A V +  TP  +  A+    AP       V+  A+ P
Sbjct: 208 AVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 38/163 (23%), Positives = 45/163 (27%), Gaps = 8/163 (4%)

Query: 360  SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEP--------VPVSPVPAPSTPPVA 411
            + P    P  T+++ T       P  P +    SV P           SP   P+ P   
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP 2881

Query: 412  TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
                     VS  TE+ A  P     P        P        P  P   P  P    P
Sbjct: 2882 PVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941

Query: 472  PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            P    T  A    PS A P P     VP         V    P
Sbjct: 2942 PLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP 2984

Length = 3151

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 41/192 (21%), Positives = 53/192 (27%), Gaps = 31/192 (16%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVP---EVKPAASVEPVPVSPVPAPSTPPVATPT 414
               PPAA     T++  +        VP     + +A          P   +   + P 
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPA 481

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE----APAAPVDTPVTPVASA 470
              P   +      AA+P AA   +        AAS        AP AP   P TP A+A
Sbjct: 482 SDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAA 541

Query: 471 PPTPA-----------------------ETPGAPEP-VPSPAAPAPVETPSVPAEPTPTA 506
           P   A                           A +P     AAP P         PTP A
Sbjct: 542 PAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRA 601

Query: 507 SPVQTSQPCAST 518
                  P    
Sbjct: 602 RAATGDAPPNGA 613

Length = 830

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.4 bits (137), Expect = 2e-08
 Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 10/142 (7%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
           +       PP A        S  ++  + P         +          A         
Sbjct: 385 AAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444

Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA----ASTPVEAPAAPVDTPVTPVAS 469
             +   PV++  E  A+    AP      P +  A    A+ PVE    PV TP      
Sbjct: 445 AASRARPVNSALERLASVR-PAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP-----K 498

Query: 470 APPTPAETPGAPEPVPSPAAPA 491
           A     E    PE     AA A
Sbjct: 499 ALKKALEHEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 34/120 (28%), Positives = 46/120 (38%), Gaps = 3/120 (2%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
            + P AA  +   + +     ++P       PAA+ +P P +P PAP+ P  A       
Sbjct: 396 AAAPSAAAAAPAAAPAPA--AAAPAAAAAPAPAAAPQPAP-APAPAPAPPSPAGNAPAGG 452

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
           AP   P    +A P  AP  +P        A     APAA    P  P A A    A T 
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATL 512

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 3/113 (2%)

Query: 400 SPVPAPSTPPVATPTETT--PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
           +     +  PVA P      PA  +       A+P AAP  +      + A +    AP 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 458 APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
           A               PA  P AP   P+ AA      P   A     A    
Sbjct: 432 ALAAARQASARGPGGAPAPAP-APAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

Length = 700

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 31/145 (21%), Positives = 36/145 (24%), Gaps = 20/145 (13%)

Query: 361 KPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP 420
                 P Q         + +    P    AAS  P   S    PS P  AT    TP  
Sbjct: 369 ASGGRGPKQHIKPVF--TQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPT 426

Query: 421 VSTPTETAAASPVAAPVPSPTT-PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
           VS         P A PV  P+T P     A    E                    +  P 
Sbjct: 427 VSVD------PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSK-----------VSSLGPS 469

Query: 480 APEPVPSPAAPAPVETPSVPAEPTP 504
              P+   A  A       P     
Sbjct: 470 TLRPIQEKAEQATGNIKEAPTGTQK 494

Length = 614

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.7 bits (134), Expect = 4e-08
 Identities = 30/112 (26%), Positives = 38/112 (33%), Gaps = 1/112 (0%)

Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
                A      PAP +     AA +P A P      P  + AA     APA     P  
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 466 PVASAPPTPAETPGAPEPVPSPAA-PAPVETPSVPAEPTPTASPVQTSQPCA 516
             A+   +     GAP P P+PAA PA    P+        A+        A
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Length = 700

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 26/88 (29%), Positives = 28/88 (31%), Gaps = 2/88 (2%)

Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
             ST           A  S P    AA   AAP P+P       A   P  A AA     
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 464 VTPVASAPPTPAETPGAPEPVP--SPAA 489
             P A+A   PA      E  P    AA
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTPLRGAAA 125

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 55.9 bits (135), Expect = 4e-08
 Identities = 36/160 (22%), Positives = 55/160 (34%), Gaps = 5/160 (3%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
             +PP   P    +E+   +  S PT      A +      SP P   + P   P  T P
Sbjct: 64  RFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP-DPPPPTPP 122

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP----VASAPPTP 474
                P+     S +  PV SP  P  +   +      A   D   +       S+P   
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182

Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
           A  P +P   P P+ P    +P  P   +P ++   +  P
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAP 222

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 28/139 (20%), Positives = 47/139 (33%), Gaps = 8/139 (5%)

Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
           E ++ +P    + +   +      S    P           +  P S+P           
Sbjct: 144 EGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGV--------P 195

Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
             PSP     SP+ S+   AP++       P   +P  P+  PG   P P P    P  +
Sbjct: 196 SFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLS 255

Query: 496 PSVPAEPTPTASPVQTSQP 514
            + P  P+ +A+P      
Sbjct: 256 TAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 32/154 (20%), Positives = 43/154 (27%), Gaps = 3/154 (1%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
              PPA   S    E+      + P  P     A     P     AP+    A       
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPV---EAPAAPVDTPVTPVASAPPTPA 475
             V   ++     P  A   +P  P  +PA + P     A  A           A     
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
                P+     +AP+P     VP  P P   P 
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPD 750

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 9e-08
 Identities = 29/146 (19%), Positives = 42/146 (28%), Gaps = 2/146 (1%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
                     S +T           PT P         P P    P PS  P  +     
Sbjct: 81  ANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRP 140

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT--PA 475
                 P   +  +  A+P    +    S  A+ P+ +P      P +P A  PP+  PA
Sbjct: 141 VGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA 200

Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAE 501
                P    SP + +       P  
Sbjct: 201 AASPRPPRRSSPISASASSPAPAPGR 226

Length = 1352

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 54.2 bits (131), Expect = 9e-08
 Identities = 24/117 (20%), Positives = 33/117 (28%), Gaps = 9/117 (7%)

Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
            P    A +    P +  PA  + P A   E  P  V         +     V     P 
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHA--KRLTAQREQLVARAAAPA 109

Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
              A +    A  A  +     +A A             VP+ AA A     +V A 
Sbjct: 110 APEAQAPAAPAERAAAENAARRLARAAAAAPRP-----RVPADAAAAV--ADAVKAR 159

Length = 484

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 26/120 (21%), Positives = 37/120 (30%), Gaps = 12/120 (10%)

Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
            P+    A P    P   +     A+A P    V        +P A+    A AA     
Sbjct: 372 VPARVAGAVPA---PGARAAAAVGASAVPAVTAVTGAAGAALAPKAA----AAAAATRAE 424

Query: 464 VTPVASAPPTPAETPGAPEPVPSP-----AAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
             P A APP  A+         +P      A A  ++     +  P A     S P +  
Sbjct: 425 APPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA 484

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 32/141 (22%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 381 SPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSP 440
            P  V    PA        + V A + P V   T    A  +     AAA+  A    +P
Sbjct: 372 VPARVAGAVPAPG--ARAAAAVGASAVPAVTAVT---GAAGAALAPKAAAAAAATRAEAP 426

Query: 441 TTPVESPAASTPVEAPAA-PVDTPVTPVASAPPTPAETPGAPEPVPSP---AAPAPVETP 496
                 PA +   +  A      P    A A           +P       +APA    P
Sbjct: 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPP 486

Query: 497 SVPAEPTPTASPVQTSQPCAS 517
               EP P A+    + P A 
Sbjct: 487 DAAFEPAPRAAAPSAATPAAV 507

Length = 830

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 54.5 bits (132), Expect = 1e-07
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
            +T AP +     AAA+   A  P+   P     A     APAAP   P    A+A    
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP-KPAAAAAAAAAPA 97

Query: 475 AETPGAPEPVPSPAAPAPVETP 496
           A    A    P+ AA     TP
Sbjct: 98  APPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 30/93 (32%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA-SAPPTP--AETP 478
             P E A    +  PVP+P     + AA +PV    AP   P    A + PP     ET 
Sbjct: 348 QLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETA 407

Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
             P   P P AP    TP    + T  A PV  
Sbjct: 408 TPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS-PTTPVESPAAS 450
           A   P   +   A +    A  +    AP +      A +P AA  P+ P  P  + AA+
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETP 478
               AP A         A+A      TP
Sbjct: 94  AAPAAPPAA--AAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 2e-07
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
           A        +PT    + AA+    A A     P  P  + P   A     P+P  + AA
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPAAAAAA 92

Query: 490 PAPVETPSVPAEPTPTASP 508
            A    P   A     A+ 
Sbjct: 93  AAAPAAPPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 41/174 (23%), Positives = 59/174 (33%), Gaps = 20/174 (11%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
            +   +    +      +   +S P   +  P A+ EP P +  P+ +TP         P
Sbjct: 456 RASADSRCDERDAQPPADSGSASAPA-SDAPPDAAFEPAPRAAAPSAATPAAVPDARA-P 513

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV--------------DTPV 464
           A  S     AAA+P A     PT    +PAA     A A  V                  
Sbjct: 514 AAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAA 573

Query: 465 TPVASAPPTPAETPGAPE---PVPSPAAPAPV-ETPSVPAEPTPTASPVQTSQP 514
               +A P  A  P AP     VP+P A A   + P   A     A+  + + P
Sbjct: 574 AAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627

Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 6/96 (6%)

Query: 361 KPPAAEPSQTTSESTEKKE-----SSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPT 414
             PA +P++ T+ +          S+ P           EPV  +  P P  P PVA P 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPV 421

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
             TP      T  A           P  P E   A 
Sbjct: 422 PHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKAL 457

Length = 585

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 30/164 (18%), Positives = 45/164 (27%), Gaps = 23/164 (14%)

Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
           KK S   +P  PP+  P  + S+      SSP        A+             S P  
Sbjct: 637 KKSSADRKPKTPPSRAPPASLSKPA----SSPD--ASQTSASFDLDPDFELATHQSVPEA 690

Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
           A  + + PAP     +     P          P  + A   P  A    +   V      
Sbjct: 691 ALASGSAPAPPP-VPDPYDRPPWEEA------PEVASANDGPNNAAEGNLSESV------ 737

Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
                +   +        A    +  +    P  T +  QTS  
Sbjct: 738 ----EDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSE 777

Length = 944

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 28/128 (21%), Positives = 38/128 (29%), Gaps = 4/128 (3%)

Query: 385 VPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPV 444
           V  V  A +      +  P+P       P   +  P     +   A       P P  P 
Sbjct: 68  VHRVNHAPANAQEHEAARPSPQHQ--YQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPA 125

Query: 445 ESPAASTPV-EAPAAPVDTPVTPVASAPPTPAE-TPGAPEPVPSPAAPAPVETPSVPAEP 502
             P         P  P+  PV+P  +  P P    P   +    PA P     P   AEP
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185

Query: 503 TPTASPVQ 510
            P     +
Sbjct: 186 APVMDKPK 193

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 1/87 (1%)

Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
           A   P +   P+      + AAS P  APAA       P   A   PA  P  P    + 
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA-APPKPAAAAAA 92

Query: 488 AAPAPVETPSVPAEPTPTASPVQTSQP 514
           AA       +  A     A+      P
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 4e-07
 Identities = 16/80 (20%), Positives = 22/80 (27%)

Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
           P    A +      +   +      A      PAP        AA P  A   +      
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 446 SPAASTPVEAPAAPVDTPVT 465
           +P A+    APAA       
Sbjct: 98  APPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 44/177 (24%), Positives = 67/177 (37%), Gaps = 22/177 (12%)

Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT 412
           I++T  P  P     ++  S+    KES     P+  P   V P   SP P    PP   
Sbjct: 306 IAETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSP-PIEEEPP--Q 362

Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
           P    P P+S  T      P  +P+P+P +   SPA+S  V+A A P +  V P   +  
Sbjct: 363 PKAVVPRPLSPYTAYEDLKPPTSPIPTPPS--SSPASSKSVDAVAKPAEPDVVPSPGSAS 420

Query: 473 TPAETPGAPEP---------------VPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
              E   A                  +  P +P+P  T      P+ +++    + P
Sbjct: 421 NVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSP--TAPTGVSPSVSSTSSVPAVP 475

Length = 576

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 40/190 (21%), Positives = 52/190 (27%), Gaps = 47/190 (24%)

Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAP--STPPVATPTETT 417
                         S + +       P     ++  P   +P  A     P  A P+  T
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAAT 503

Query: 418 PAPVSTPTETAAAS----PVAAPVPSPTTPVESPAASTPVE------------------- 454
           PA V      AAAS    P AA  P+P     +PAA+ P                     
Sbjct: 504 PAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRV 563

Query: 455 ------------APAAPVDTPVTPVASAPPTPAETPGAP----EPVPSPAAPAPVETPSV 498
                        PAA       P A        TP A     +  P+ AA A       
Sbjct: 564 SSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAE------ 617

Query: 499 PAEPTPTASP 508
            A  +  A P
Sbjct: 618 QAAESRGAPP 627

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 31/145 (21%), Positives = 45/145 (31%), Gaps = 4/145 (2%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
           + S      P++    +      +P       PA +    P       +TPP     +  
Sbjct: 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA--PAATPPAGQADDPA 718

Query: 418 PAPVSTPTETAAASPVAAP-VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
             P       +A SP A   VP P  P + P  +     P  P   P    A A   P  
Sbjct: 719 AQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP-PAPAPAAAPAAAPPPS 777

Query: 477 TPGAPEPVPSPAAPAPVETPSVPAE 501
            P   E +    AP+  +     AE
Sbjct: 778 PPSEEEEMAEDDAPSMDDEDRRDAE 802

Length = 824

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 23/89 (25%), Positives = 32/89 (35%)

Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
            VP  ++      T   PA     T T + +P  A  P+P    +  A   P +A     
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTA 220

Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAA 489
            TP     + P   A  P     V +PAA
Sbjct: 221 ATPAPAAPATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.8 bits (125), Expect = 8e-07
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
             S   P  + AA+    +  A       P A AP  PA    A  P P+ AA A    P
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA-AAP 96

Query: 497 SVPAEPTPTASPVQTSQPCAST 518
           + P      A+P   +     T
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 19/95 (20%), Positives = 27/95 (28%), Gaps = 1/95 (1%)

Query: 395 EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE 454
           + VP+             P         T ++T A +   AP   P        +   V+
Sbjct: 160 QSVPLDTSTTTDPATTPAPA-APVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVD 218

Query: 455 APAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
             A P          A P P +  G   P   P A
Sbjct: 219 TAATPAPAAPATPDGAAPLPTDQAGVSTPAADPNA 253

Length = 331

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 5/103 (4%)

Query: 419 APVSTPTETAAASPVAAP----VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
            P ++  E    + +         +      + AA +   A  A    P     +A   P
Sbjct: 364 LPSASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP 423

Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
           A    AP+P P+PA      +P+  A      SP   + P A 
Sbjct: 424 AP-AAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 5/96 (5%)

Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
               A+  AAPV  P     +PAA+ P  A            A+A    A  P    P P
Sbjct: 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP 430

Query: 486 SPAAPAPVETPSVPA-----EPTPTASPVQTSQPCA 516
              A A   +   P       P P A+P   ++P A
Sbjct: 431 EALAAARQASARGPGGAPAPAPAPAAAPAAAARPAA 466

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 27/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
           PP  E  +    +T   ++S P       +AS    P S    PS P       +     
Sbjct: 152 PPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSS 211

Query: 422 STPTETAAASPVAAPVPSPTT-PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
             P  ++  S    P P   T P   P  + P   P   V    T   + P   A     
Sbjct: 212 LPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPI 271

Query: 481 PEPVPSPAA 489
                   A
Sbjct: 272 GGITLDDDA 280

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 51.2 bits (122), Expect = 1e-06
 Identities = 42/158 (26%), Positives = 53/158 (33%), Gaps = 10/158 (6%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
           P +PP  E   T  + T  +    P  P   P  +   +P+   P    PP   PT   P
Sbjct: 651 PHQPPQVEI--TPYKPTWTQIGHIPYQP--SPTGANTMLPIQWAPGTMQPPPRAPTPMRP 706

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
            P + P    A  P AA   +         A  P  AP         P  + PP  A   
Sbjct: 707 -PAAPP--GRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 763

Query: 479 GAPEPVPSPAAPAPVETPSVPAEPT--PTASPVQTSQP 514
            A  P  +P AP P   P  P  P   P  +P     P
Sbjct: 764 -ARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP 800

Length = 991

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 7/89 (7%)

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV----P 485
           A+   A  P+       P A+ P  AP A         A A    A       P     P
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQ---AAAAPAPAAAPAAAASAPAAPPAAAPP 423

Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
           +P A      P+      P A  +  + P
Sbjct: 424 APVAAPAAAAPAAAPAAAPAAVALAPAPP 452

Length = 618

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 35/116 (30%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVP--SPTTPVESPAASTPVEAPA--------APV 460
           A P     APV+ P   AAA   AAP P   P  P  +PAA+    A A        AP 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 461 DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
                  ASA         AP P  +PAA A              A+    + P A
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 29/150 (19%), Positives = 38/150 (25%), Gaps = 8/150 (5%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVP---EVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
             A + S            +P   P       AA   PV  +   AP     A      P
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAP--ARAAPAAAPAP 491

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
           A    P         A+P P+      +   +  +  PA           +  P  A  P
Sbjct: 492 ADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAP 551

Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
            A        AP P   P   A   P    
Sbjct: 552 RAAAATEPVVAPRP---PRASASGLPDMFD 578

Length = 700

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 24/110 (21%), Positives = 35/110 (31%), Gaps = 7/110 (6%)

Query: 369 QTTSESTEKKESSPP--TVPEVKPAASVEPVPVSPVPAPSTPPVAT--PTETTPAPVSTP 424
           Q  +  +E    + P      V+P    E  P  PVPAP+    A        P   + P
Sbjct: 97  QKATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKP 156

Query: 425 TETAA-ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
              +   +  AAP P+ T   +    +     P A      TP       
Sbjct: 157 RAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTAD--KTATPAKKTTKK 204

Length = 209

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 28/92 (30%), Gaps = 1/92 (1%)

Query: 417 TPAPVSTP-TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
            P P   P   TAAA     P P+P+T  ++ AA+               PV   P  P 
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 476 ETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
                        A  PV+       P P   
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 25/109 (22%), Positives = 38/109 (34%), Gaps = 3/109 (2%)

Query: 343 KDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPV 402
            +S D  W++      P    A   +   + +     ++ P        A   P   +P 
Sbjct: 22  PNSVDPSWREFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPA 81

Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
             P     A       AP + P   AAA+P AA V    TP+   AA+ 
Sbjct: 82  APPKPAAAAAAA---AAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAV 127

Length = 1228

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
             P      T   TTPAP +    T   S     V +   P   P  +  V    A VDT
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQ-TPAVATAPAPAVDPQQNAVVAPSQANVDT 219

Query: 463 PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
             TP  +AP TP          P P   A V TP+ 
Sbjct: 220 AATPAPAAPATPDGAA------PLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 44/170 (25%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 354 SQTIEPSKPPAAE-PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPA-----PST 407
           SQ + P +  AA+ P    ++    +  SPP   E     +V P P+SP  A     P T
Sbjct: 325 SQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPPT 384

Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST-PVEAPAAPVDTPVTP 466
            P+ TP  ++    S   +  A       VPSP +    P      VEA      +P   
Sbjct: 385 SPIPTPP-SSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYAR 443

Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCA 516
                P  + +P AP  V    +      P+VP     TA+    + P A
Sbjct: 444 YEDLKPPTSPSPTAPTGVSPSVSSTSSV-PAVPDTAPATAATDAAAPPPA 492

Length = 576

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 49.9 bits (118), Expect = 2e-06
 Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 5/188 (2%)

Query: 319 AEQLA---YEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSEST 375
           AEQLA    +D  HR    +  +    KD      +  +      +  AA+ +   S   
Sbjct: 156 AEQLAAKRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKK 215

Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
             K ++P         A+  P   +  PA +    A          + P + AA    AA
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275

Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTP--VASAPPTPAETPGAPEPVPSPAAPAPV 493
             P+      + AA+ P +A AAP      P   A+AP   A  P      P+ AA  P 
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335

Query: 494 ETPSVPAE 501
           +  + PA+
Sbjct: 336 KAAAPPAK 343

Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 43/182 (23%), Positives = 56/182 (30%), Gaps = 32/182 (17%)

Query: 347 DNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
           D +W         + P   +P         ++E       EV          VSP+P P 
Sbjct: 295 DGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEV----------VSPLPRPR 344

Query: 407 ---------------TPPVA----TPTETTPAPVSTPTETAAASP-VAAPVPSPTTPVES 446
                          TPP +    +     P   S PT    ++   A P        + 
Sbjct: 345 QHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQ 404

Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
              + PV A   P   P    ASAPP PA    + EP  S   PAP      PA  T  A
Sbjct: 405 TRPAAPVPAS-VPTPAPTPVPASAPPPPATPLPSAEP-GSDDGPAPPPERQPPAPATEPA 462

Query: 507 SP 508
             
Sbjct: 463 PD 464

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 42/179 (23%), Positives = 51/179 (28%), Gaps = 20/179 (11%)

Query: 354  SQTIEPSKPPAAEPSQTTSEST-----EKKESSPPTVPEVKPAASVEPVPVS----PVPA 404
            +Q   P  PP   P       +     + +   P   P  KPAA   P PV     P  +
Sbjct: 2834 AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP-PVRRLARPAVS 2892

Query: 405  PSTPPVATPTET-----TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
             ST   A P +       P     P       P   P P P  P        P   PA  
Sbjct: 2893 RSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPA-- 2950

Query: 460  VDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
                    + A P P      P  V  P    P   PS  A  + T      S    S+
Sbjct: 2951 ---GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSS 3006

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 29/134 (21%), Positives = 36/134 (26%), Gaps = 4/134 (2%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETT 417
            P+  PA   +   +         P         A   P           PP        
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
            +P     + A A  VA  +P P T     A  T   APAA       P A+A   P   
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA----APAPRAAAATEPVVA 562

Query: 478 PGAPEPVPSPAAPA 491
           P  P    S     
Sbjct: 563 PRPPRASASGLPDM 576

Length = 700

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 49.2 bits (117), Expect = 4e-06
 Identities = 39/151 (25%), Positives = 54/151 (35%), Gaps = 4/151 (2%)

Query: 359 PSKPPAAEPSQTT---SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
           P   PA   ++ T   S     ++  PPT P       V P   S    P+ P  A  T 
Sbjct: 423 PEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATA 482

Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
            T A    P      SP A           SPAA     AP++  +      ++ P   A
Sbjct: 483 ATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542

Query: 476 ETPGAPEPVPSPAAPAPV-ETPSVPAEPTPT 505
           +     +P P P +P  + E    P  PTP+
Sbjct: 543 DEQHHAQPKPRPLSPYTMYEDLKPPTSPTPS 573

Length = 576

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 9/152 (5%)

Query: 363 PAAEPSQTTSESTEKKE-SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
           P A  S   +   E  E  SP      K  A+ +P P        TP        T +  
Sbjct: 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPV------QTASAA 413

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
           + P+E   A PV+    +   P E         A  A         AS   TP E   + 
Sbjct: 414 AMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEAETPPENQVSK 473

Query: 482 EPVPSPAAPAPV-ETPS-VPAEPTPTASPVQT 511
                    AP+ E PS  P + TP    V+T
Sbjct: 474 NKAADNETDAPLSEVPSENPIQATPNDEAVET 505

Length = 709

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 31/138 (22%), Positives = 40/138 (28%), Gaps = 11/138 (7%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPTETT 417
                 A   +  +     +    P     +P   V+  P + VP    P P     +  
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
             P   P       P+  PV     P   P  S P   PA     P  PVA+  P P   
Sbjct: 130 QQPAYQPQPEQ---PLQQPVSPQVAPAPQPVHSAP--QPAQQAFQPAEPVAAPQPEPVA- 183

Query: 478 PGAPEPVPSPAAPAPVET 495
               EP P    P   E 
Sbjct: 184 ----EPAPVMDKPKRKEA 197

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 6e-06
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 378 KESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPV 437
                 T      AA+      +P  AP+    A P    PA  + P      +  AA  
Sbjct: 35  DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAA-AAPAAPPKPAAAAAAA 93

Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
            +P  P  + AA+ P  A      TP+   A+A
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 48.4 bits (116), Expect = 6e-06
 Identities = 23/115 (20%), Positives = 29/115 (25%), Gaps = 7/115 (6%)

Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
           A++ P   +   A   PP A P   +            A  +       T   E   A  
Sbjct: 49  AALAPPAAAAPAAAQPPPAAAPAAVSRPAAPAA---EPAPWLVEHAKRLTAQREQLVAR- 104

Query: 452 PVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
              A A        P A A    AE         + AAP P       A      
Sbjct: 105 ---AAAPAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADAV 156

Length = 484

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 32/92 (34%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
           S V   +  PVA   E   AP     E A A+P+ A   S  +P   P       APA  
Sbjct: 37  SLVAEGAAGPVAKAAEQMAAP-----EAAEAAPLPAAAESIASPEVPPP---VPPAPAQE 88

Query: 460 VDTPVTPVASAPPTPAETPGAPEPV-PSPAAP 490
            + P     SA P P+  P   EPV PS AA 
Sbjct: 89  GEAPAAEQPSAVPAPSAAPAPAEPVEPSLAAN 120

Length = 931

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 8/98 (8%)

Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPV--PSPTTPVESPAASTPVEAPAAPVDTP 463
           S P +A   E      +T TE    +PV +     +  T     AA+T  EAP     + 
Sbjct: 21  SNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTET-PVAATTAAEAP-----SS 74

Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAE 501
                ++ PT   T        +    A   +  V  +
Sbjct: 75  SETAETSDPTSEATDTTTSEARTVTPAATETSKPVEGQ 112

Length = 814

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 35/128 (27%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 387 EVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVES 446
            V PA         P PA S PP        PA  + P   A A   AAP  +   P   
Sbjct: 587 VVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPG 646

Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
            AA        A  D                P AP P  +PA  AP   P+  A   P  
Sbjct: 647 VAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPP--APAPAAPA-APAGAAPAQPAP 703

Query: 507 SPVQTSQP 514
           +P  T   
Sbjct: 704 APAATPPA 711

Length = 824

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 1/83 (1%)

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
             +     P AAP P       SP+ S    A         T  A  PPT +  P A  P
Sbjct: 378 HIKPVFTQPAAAPQP-SAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVP 436

Query: 484 VPSPAAPAPVETPSVPAEPTPTA 506
           V  P+       P+   E     
Sbjct: 437 VNPPSTAPQAVRPAQFKEEKKIP 459

Length = 614

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 424 PTETAAASPV---AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP------TP 474
           P+      P    A P      P E+         PA P   PV   A  P        P
Sbjct: 86  PSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQP 145

Query: 475 AETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
                AP P P  +AP P +    PAEP     P   ++P
Sbjct: 146 VSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEP 185

Length = 333

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 30/114 (26%), Positives = 39/114 (34%), Gaps = 9/114 (7%)

Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
           +P+ P P     P   P  T   P + P E AA +  A    +P+           V  P
Sbjct: 41  IPLVPKPGDRDEPDMMPAATQALP-TQPPEGAAEAVRAGDAAAPSL------DPATVAPP 93

Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA-PAPVETPSVPAEPTPTASPV 509
             PV+    PV    P P E P  P+P P       P   P         A+P 
Sbjct: 94  NTPVEPEPAPVEPPKPKPVEKP-KPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 37/161 (22%), Positives = 54/161 (33%), Gaps = 13/161 (8%)

Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP 424
            EP +TT+  T        T P V  A      P S  P  +T        +  +  ++ 
Sbjct: 441 VEPHKTTAVPTTPSLPPASTGPTVSTAD-----PTSGTPTGTTSSTLPEDTSPTSRTTSA 495

Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP--- 481
           T  A +   A   P+ T+P     + TP      P+   VT  A++PPT   +       
Sbjct: 496 TPNATSPTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSP 555

Query: 482 -----EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
                 PV +   P     PSV      T      S P + 
Sbjct: 556 QVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQ 596

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 36/129 (27%), Positives = 44/129 (34%), Gaps = 9/129 (6%)

Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP 436
              + P +V  V PA    P  V P P P   P     E  P P+  P + A   PV  P
Sbjct: 42  PAPAQPISVTMVAPADLEPPQAVQPPPEPVVEP-----EPEPEPIPEPPKEA---PVVIP 93

Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPA-PVET 495
            P P    +      PV+         V PV   P +P E      P  S A  A     
Sbjct: 94  KPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPV 153

Query: 496 PSVPAEPTP 504
            SV + P  
Sbjct: 154 TSVSSGPRA 162

Length = 246

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 29/172 (16%), Positives = 50/172 (29%), Gaps = 10/172 (5%)

Query: 334 EEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAAS 393
           + G+ D  G+  W   + +    +   +    + S+      + +  S PT+    P   
Sbjct: 212 DYGYFDENGEWIWKGYFDEDGNWVWTRELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEV 271

Query: 394 VEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAP---VPSPTTPVESPAAS 450
            +P+   PV         T  ET       PT+T    P +AP   V      +  P  +
Sbjct: 272 EQPLQPEPVD------EETVAETKAEEEPQPTQTVETKPTSAPESTVEENLPEINQPTQA 325

Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
               +      TPV P     P   +                + T       
Sbjct: 326 VQPTS-ETISTTPVEPTDQLKPKEVDQIQEELKKTKEIEVEELPTKKNDLVE 376

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 42/149 (28%), Positives = 49/149 (32%), Gaps = 16/149 (10%)

Query: 382  PPTVPEVKPAASVEPVPVS-PVPAPSTP--------PVATPTETTP-APVSTP-----TE 426
            PP  P   PAA    VP   P P PS P        P A P    P APV          
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPA 2612

Query: 427  TAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-ASAPPTPAETPGAPEPVP 485
              +  P     P P  P  SPAA+ P   P   V  P  P    AP   +    A     
Sbjct: 2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

Query: 486  SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            +  A +P + P   A      S    + P
Sbjct: 2673 AAQASSPPQRPRRRAARPTVGSLTSLADP 2701

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
            + A +        P        A+AP   A    AP   P+ AA AP   P   A P P
Sbjct: 367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPA-APPAAAPPAP 425

Query: 505 TASPVQTSQPCA 516
            A+P   +   A
Sbjct: 426 VAAPAAAAPAAA 437

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 3/144 (2%)

Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
            ++  E +  TV     A      P  P P P T   A  + +TP    +    A+ +  
Sbjct: 44  VSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPARE 103

Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV---ASAPPTPAETPGAPEPVPSPAAP 490
            +P P   +  + P  + P  +P       ++ +     +P  P             A  
Sbjct: 104 GSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163

Query: 491 APVETPSVPAEPTPTASPVQTSQP 514
           +   +    A P  +      +  
Sbjct: 164 SDAASSRQAALPLSSPEETARAPS 187

Length = 1352

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 51/184 (27%), Positives = 63/184 (34%), Gaps = 28/184 (15%)

Query: 358 EPSKPPAAEP---SQTTSESTEKKESSP-PTVPEVKPAASVE----PVPVSPVPAPSTPP 409
           EP +P A  P   S  T+    K  +SP PT P   PA+S        P  P   PS   
Sbjct: 359 EPPQPKAVVPRPLSPYTAYEDLKPPTSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGS 418

Query: 410 VATPTETTPAPVSTPTETAAA--------SPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
            +   E  PA V        +         P  +P P+  T V    +ST    PA P  
Sbjct: 419 ASNVPEVEPAQVEAKKTRPLSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSS-VPAVPDT 477

Query: 462 TPVTPVAS--APPTPAETPGAPEPV---------PSPAAPAPVETPSVPAEPTPTASPVQ 510
            P T      APP     P +P  V         PSPAAP     PS   E     +   
Sbjct: 478 APATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAP 537

Query: 511 TSQP 514
            +  
Sbjct: 538 PTAL 541

Length = 576

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 29/137 (21%), Positives = 40/137 (29%), Gaps = 6/137 (4%)

Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASP--- 432
            K+ ++         A +      +P   P+  P+A          +   E AA      
Sbjct: 265 RKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAAD 324

Query: 433 VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAP 492
            AA  P+        AA  P EA     D P    A    + A+ PGA       AA  P
Sbjct: 325 KAADKPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGA---SADAAARTP 381

Query: 493 VETPSVPAEPTPTASPV 509
                  A    T    
Sbjct: 382 ARARDAAAPDADTPPGG 398

Length = 413

>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 41/144 (28%), Positives = 54/144 (37%), Gaps = 26/144 (18%)

Query: 361 KPPAAEPSQTTSESTEKK-ESSPPTVPEVKPAASVEPVPV------SPVPAPSTPPV--- 410
           +PP  +P     +S E         VPE  P   +EP P+      +P P    PP    
Sbjct: 417 RPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEPGPLHDQHSMAPCPVAQLPPGPLQ 476

Query: 411 -ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
              P +  P  V          P  APVP+P  P+  P  ++  + P          VA 
Sbjct: 477 DLEPGDQLPGVVQDG------RPACAPVPAPAGPIVRPWEASLSQVPG---------VAF 521

Query: 470 APPTPAETPGAPEPVPSPAAPAPV 493
           AP  P   P  P PVP+ A   PV
Sbjct: 522 APVMPQPMPVEPVPVPTVALERPV 545

Length = 935

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 30/147 (20%), Positives = 43/147 (29%), Gaps = 7/147 (4%)

Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
           A   +    E        P T      + S     +S +   S     +PT   P+    
Sbjct: 57  AGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP 116

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP--TPAETPGAP 481
           P       P A+P PSP   +           P      P    + A      A +  A 
Sbjct: 117 P---PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAA 173

Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASP 508
            P+ SP        PS P    P ++P
Sbjct: 174 LPLSSP--EETARAPSSPPAEPPPSTP 198

Length = 1352

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 8/161 (4%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV---ATPTETTP 418
           PP++ P+ + S     K + P  VP    A++V  V  + V A  T P+   A   +  P
Sbjct: 390 PPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSPYARYEDLKP 449

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVES--PAASTPVEAPAAPVDTPVTPVA---SAPPT 473
               +PT     SP  +   S     ++    A+T   AP      P++P A      P 
Sbjct: 450 PTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPP 509

Query: 474 PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            + +P AP    +P++   V      A PT  A     +QP
Sbjct: 510 TSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQP 550

Length = 576

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 8/141 (5%)

Query: 361 KPPAAEPSQTTSESTEKKESSPPTVPEVKPA-ASVEPVPVSPVPAPSTPPVATPTETTPA 419
           K  A   +   + +   K ++PP      PA A+  P   +  PA +  P A        
Sbjct: 214 KKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAK 273

Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-ASAPPTPAETP 478
             + P + AA    AA  P+      + AA+ P +A AAP      P  A+APP  A TP
Sbjct: 274 AAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATP 333

Query: 479 GAPEPVPSPAAPAPVETPSVP 499
                 P+ AA  P +  + P
Sbjct: 334 ------PAKAAAPPAKAAAAP 348

Length = 357

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 21/74 (28%), Positives = 24/74 (32%)

Query: 441 TTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
           T      AA     A  A   TP  P A+AP         P P  +   P P      P 
Sbjct: 120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179

Query: 501 EPTPTASPVQTSQP 514
            P   A P +T  P
Sbjct: 180 TPVARADPRETRVP 193

Length = 418

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 5/125 (4%)

Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
            P A+    P S V   S    ++    +PA + +   T +A+   A   + ++    P+
Sbjct: 299 VPVAA--VTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPS 356

Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
             T     A P   PV        T      +   + +  A  P  T S+PA P      
Sbjct: 357 DVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNI-TSTANGP--TTSLPAAPASNIPV 413

Query: 509 VQTSQ 513
             TS+
Sbjct: 414 SPTSR 418

Length = 421

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 364 AAEPSQTTSES---TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP--PVATPTETTP 418
           +AE SQ + +S        + P T P         P   S  PA +T   P   P +   
Sbjct: 151 SAELSQNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTN-SQTPAVATAPAPAVDPQQNAV 209

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
              S      AA+P  A   +P      P     V  PAA
Sbjct: 210 VAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 30/128 (23%), Positives = 40/128 (31%), Gaps = 22/128 (17%)

Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
           K + + +E       EP+       E+  + P    + +P   VE V V   P P +   
Sbjct: 100 KDLEKLLEK-VLGEEEPA-----PQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEE 153

Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
                               +PV  PV S    V  PA  TPV     P   P  PV   
Sbjct: 154 TIKP--------------GPAPVEEPVDSMAIAV--PAIDTPVTLELPPAPQPPPPVVPQ 197

Query: 471 PPTPAETP 478
           P T     
Sbjct: 198 PSTMVVHR 205

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 25/121 (20%), Positives = 32/121 (26%), Gaps = 7/121 (5%)

Query: 355  QTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
            Q I  S    A+  +    +    E    T    + A + E V   P             
Sbjct: 929  QVITESDVAVAQ--EVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAE 986

Query: 415  ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
                          A  P  AP   P   VE   A+ P+    AP   P  P  S    P
Sbjct: 987  VAAEVE-----TVTAVEPEVAPAQVPEATVEHNHATAPMTRAPAPEYVPEAPRHSDWQRP 1041

Query: 475  A 475
             
Sbjct: 1042 T 1042

Length = 1068

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 7/128 (5%)

Query: 398  PVSPVPAPSTPPVATPTETTPAPVSTPTETAAAS----PVAAPVP-SPTTPVE--SPAAS 450
            P  P+P  + P     +   P P   P+E A  S    P A P    P  PV+       
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 451  TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
                +P  P      P   +P   A  P    P   P    P + P+      P  +   
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 511  TSQPCAST 518
                 AS+
Sbjct: 2671 GRAAQASS 2678

Length = 3151

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 413 PTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPP 472
                  P+ T T T  A+  A   P  TTP  S   +    APA  VD     V +   
Sbjct: 156 QNSGQSVPLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVAT-APAPAVDPQQNAVVAPSQ 214

Query: 473 TPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTAS 507
              +T   P P            P+  A  +  A+
Sbjct: 215 ANVDTAATPAPAAPATPDGAAPLPTDQAGVSTPAA 249

Length = 331

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP 485
           E      V AP+    T    PAA     A AA      TP       P   P A     
Sbjct: 104 EEGDTVEVGAPLSEIDTGGAPPAA--APAAAAAAKAEKTTPEKPKAAAPTPEPPAA---S 158

Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            P  PA  + P       P  +PV  + P
Sbjct: 159 KPTPPAAAKPPEPAPAAKPPPTPVARADP 187

Length = 418

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 38/161 (23%), Positives = 47/161 (29%), Gaps = 13/161 (8%)

Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP-PVATPTET--TPAP 420
           A   +Q+ +   E    +PP V  V    +   V   PVP P T  PV  P         
Sbjct: 326 ATTATQSWAAPVEPVTQTPP-VASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQS 384

Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET--- 477
                      P+  PV  P  P  +PAA  P + P      P  P       PA     
Sbjct: 385 QYAQPAVQYNEPLQQPVQ-PQQPYYAPAAEQPAQQPYY-APAPEQPAQQPYYAPAPEQPV 442

Query: 478 ---PGAPEPVPSPAAPAPVETPSVP-AEPTPTASPVQTSQP 514
                  E   S  AP           +P       Q  QP
Sbjct: 443 AGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQP 483

Length = 1355

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 44/187 (23%), Positives = 58/187 (31%), Gaps = 36/187 (19%)

Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPT 425
           EP +  SE        P   PE   A +  P P +  PAP+ P      E T   +    
Sbjct: 78  EPGEAGSEPAPAA-PEPEAAPE-PEAPAPAPTPAAEAPAPAAPQAGGSGEATEVKMPELG 135

Query: 426 ETAAASPVAA---------PVPSPT---------TPVESPAASTPVEAPAAPVDT----- 462
           E+     V +          V  P          T + SP A T +E  A   DT     
Sbjct: 136 ESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPEDDTVEVGT 195

Query: 463 -----------PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQT 511
                      P  P     P P+E    P P P+  AP     P  PA      +    
Sbjct: 196 VLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAA 255

Query: 512 SQPCAST 518
           + P +S 
Sbjct: 256 AAPVSSG 262

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 3/97 (3%)

Query: 365 AEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP-VATPTETTPAPVST 423
           + P  T++ +      +P    +  P  S  P  V+  PAP+  P        + A V T
Sbjct: 161 SVPLDTSTTTDPATTPAPAAPVDTTPTNSQTP-AVATAPAPAVDPQQNAVVAPSQANVDT 219

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPV 460
              T A +  A P  +   P +    STP   P A V
Sbjct: 220 AA-TPAPAAPATPDGAAPLPTDQAGVSTPAADPNALV 255

Length = 331

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 45.5 bits (107), Expect = 6e-05
 Identities = 37/157 (23%), Positives = 51/157 (32%), Gaps = 12/157 (7%)

Query: 358 EPSKPPAAEPSQTTSESTEK---KESSPPTVPEVKPAASVEPVPVSPVPA----PSTPPV 410
           E S  P   P     E  E    KES  P             V   P PA    PS  P 
Sbjct: 515 EASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPT 574

Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTP--VEAPAAPV--DTPVTP 466
            +     P     P +         P  S   P    +   P  ++ P +P   ++P +P
Sbjct: 575 LSKKPEFPKDPKHPKDPEEPKKPKRPR-SAQRPTRPKSPKLPELLDIPKSPKRPESPKSP 633

Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
               PP    +P  PE      +P P ++P  P +P 
Sbjct: 634 KRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPK 670

Length = 943

>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 23/141 (16%), Positives = 39/141 (27%), Gaps = 16/141 (11%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPST------ 407
           +     SKP ++  +  TS S +          +  P A+      +P P P        
Sbjct: 652 APPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAA-LASGSAPAPPPVPDPYDRP 710

Query: 408 ----PPVATPTETTPA-----PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
                P        P       +S   E A+ S + A     T   +  A +    +  A
Sbjct: 711 PWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTA 770

Query: 459 PVDTPVTPVASAPPTPAETPG 479
              T      +       + G
Sbjct: 771 LTQTSSEVQDTELNLVLLSSG 791

Length = 944

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 7/120 (5%)

Query: 401 PVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST---PVEAPA 457
             PA S   V     T  +P  T   TAA   +  P+   + P    A++T     + P+
Sbjct: 316 HTPATSEGQVTISIMTGSSPAETKASTAAWK-IRNPLSRTSAPAVRIASATFRGLEKNPS 374

Query: 458 APVDTPVTP-VASAPPTPAETPGAPEPVP-SPAAPAPVETPSV-PAEPTPTASPVQTSQP 514
               TP TP V +   T        +P P  P  P+P  T ++ P  P+P+ S +   QP
Sbjct: 375 TAPSTPATPRVRAVLTTQVHHCVVVKPAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQP 434

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 26/127 (20%), Positives = 33/127 (25%), Gaps = 6/127 (4%)

Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
            ++       +P+   +  P      P  P    P    P   +      A  PV  P  
Sbjct: 75  PANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQP-- 132

Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP--EPVPSPAAPAPVETP 496
               P        PV    AP   PV   A  P   A  P  P   P P P A       
Sbjct: 133 -AYQPQPEQPLQQPVSPQVAPAPQPVHS-APQPAQQAFQPAEPVAAPQPEPVAEPAPVMD 190

Query: 497 SVPAEPT 503
               +  
Sbjct: 191 KPKRKEA 197

Length = 333

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 44.0 bits (104), Expect = 8e-05
 Identities = 21/97 (21%), Positives = 25/97 (25%), Gaps = 1/97 (1%)

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
                 P E   A P+ A  P P   VE        E P+        P     P  +  
Sbjct: 111 GEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMA 170

Query: 478 PGAPEP-VPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
              P    P      P   P  P  P P+   V    
Sbjct: 171 IAVPAIDTPVTLELPPAPQPPPPVVPQPSTMVVHRRS 207

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 9e-05
 Identities = 39/175 (22%), Positives = 62/175 (35%), Gaps = 16/175 (9%)

Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPP------ 409
              P+ PPA+ P     + +E         P    +        + V + +         
Sbjct: 116 PPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP 175

Query: 410 VATPTETTPAPVSTPTE--TAAASPVAAPVPSPTTPVESPAASTPVEAPA--APVDTPVT 465
           +++P ET  AP S P E   +     A+P P   +   S +AS+P  AP   A  D   +
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235

Query: 466 PVASAPPTPAETPGAPE---PVPSPA---APAPVETPSVPAEPTPTASPVQTSQP 514
              S+    +     PE   P+P PA    P  +   S    P+    P  +S  
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSS 290

Length = 1352

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 1/89 (1%)

Query: 383 PTVPEVKPAASVEPVPVSPVPAPST-PPVATPTETTPAPVSTPTETAAASPVAAPVPSPT 441
             +P   P  + E V      APS  P    P  T   P   P E     PV  P P P 
Sbjct: 61  QALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPK 120

Query: 442 TPVESPAASTPVEAPAAPVDTPVTPVASA 470
              +  A   P   P   V+    P   A
Sbjct: 121 PQQKVEAPPAPKPEPKPVVEEKAAPTGKA 149

Length = 226

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 44.6 bits (105), Expect = 9e-05
 Identities = 32/138 (23%), Positives = 41/138 (29%), Gaps = 5/138 (3%)

Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAP----VSTPTETAAASPVAAPV 437
           P +VP   PAA+       P PA      A    T P       + P +  A     APV
Sbjct: 117 PVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPV 176

Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
           P         AA  PV A AA +               +     +       P     P 
Sbjct: 177 PRAPVQAPVVAAPAPVPAIAAALAAHAAYAQDDDEQLDDDGFDLDDALPQILPPAALPPI 236

Query: 498 VPAEPTP-TASPVQTSQP 514
           V A   P   + V  + P
Sbjct: 237 VVAPAAPAALAAVAAAAP 254

Length = 559

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 4/108 (3%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET- 416
             +  PAA      +         P   P   PA            APS PP A P+   
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESP-AASTPVEAPAAPVDTP 463
            PAP + P  TAA +P     P+P     +P A + P  A A    T 
Sbjct: 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP--AGADDAATL 512

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/153 (16%), Positives = 41/153 (26%), Gaps = 9/153 (5%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
           PP          +       P   P++           SP P P+  P A          
Sbjct: 108 PPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVG---SPGPPPAASPPAAGASPAAVA- 163

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
           S    +  A+   +          SP A  P   P A              +   +  A 
Sbjct: 164 SDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAA-----ASPRPPRRSSPISASAS 218

Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            P P+P   A  +  +  ++ + + S      P
Sbjct: 219 SPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251

Length = 1352

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 29/117 (24%), Positives = 35/117 (29%), Gaps = 13/117 (11%)

Query: 383 PTVPEVKPAASVEPVPVSPV--PAPSTPP----VATPTETTPAPVSTPTETAAASPVAAP 436
           P VP  KP    EP  +       P+ PP     A       AP   P   A  +    P
Sbjct: 42  PLVP--KPGDRDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEP 99

Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
            P+P  P +      P   P         P     P P   P   E   +P   A V
Sbjct: 100 EPAPVEPPKPKPVEKPKPKPKPQQKVEAPP----APKPEPKP-VVEEKAAPTGKAYV 151

Length = 226

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 33/145 (22%), Positives = 45/145 (31%), Gaps = 21/145 (14%)

Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTP-APVSTPTETA---------------AASPV 433
           PA +  P P    P     PV  P + +  A +S     A                + P 
Sbjct: 63  PATAAAPAPAPQAPTKPAAPVHAPLKLSANANMSQRQRVASAAEDMIAAMALRQPVSVPR 122

Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP----AETPG-APEPVPSPA 488
            AP  +P      P+ +    A AA V T      +    P    A+    AP P     
Sbjct: 123 QAPAAAPVRAASIPSPAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTTAPVPRAPVQ 182

Query: 489 APAPVETPSVPAEPTPTASPVQTSQ 513
           AP       VPA     A+    +Q
Sbjct: 183 APVVAAPAPVPAIAAALAAHAAYAQ 207

Length = 559

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 2/120 (1%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS-TPPVATPTET 416
           E  +P    P +     TE +    PT P+ K     E  P  P P P   P      + 
Sbjct: 54  EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113

Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
            P P   P++TAA +P AAP      P  + A+       A+ +      +  AP  PA+
Sbjct: 114 QPKPKKPPSKTAAKAP-AAPNQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQ 172

Length = 244

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 32/138 (23%), Positives = 41/138 (29%), Gaps = 11/138 (7%)

Query: 382 PPTVPEVKPAASVEPVPVSPVPAPSTPPV---ATPTETTPAPVSTPTETAAASPVAAPVP 438
             TV E+   +   PV  + +P P          P    P PV  P  TA  S VA   P
Sbjct: 624 RATVGEM-IISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP 682

Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSV 498
              T   +   +     P  P           PP P     A  P P  ++     T   
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGG----GLPPPPDLPAAAG-PAPCGSSLIASPTA-- 735

Query: 499 PAEPTPTASPVQTSQPCA 516
           P EP P  +         
Sbjct: 736 PPEPEPPGAEQADGAENQ 753

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 31/153 (20%), Positives = 43/153 (28%), Gaps = 7/153 (4%)

Query: 359  PSKPPAAEPSQTT---SESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
            PS+ PAA+P+           +   S  T     P    E  P    P P  P    P  
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

Query: 416  TTPAPV----STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
              P P       P    A +   A    P+  V  P     V    A     V   A + 
Sbjct: 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSR 2986

Query: 472  PTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
              PA +             +   + ++  E  P
Sbjct: 2987 EAPASSTPPLTGHSLSRVSSWASSLALHEETDP 3019

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
           T  PS  P A  +         +E++ P     +P A   PVP +P  AP     A P +
Sbjct: 382 TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAP--PVPHTPESAPKLTRAAIPVD 439

Query: 416 TTP---APVSTPTETAAA 430
             P    P     E  A 
Sbjct: 440 EKPKYTPPAPPKEEEKAL 457

Length = 585

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 353 ISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVS-----PVPAPST 407
            +Q     +P AA     +   ++   ++ P+ P+     +  P  VS      VP    
Sbjct: 383 FTQPAAAPQPSAAA--AASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVN-- 438

Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
           PP   P    PA      +    S V++  PS   P++  A         AP  T
Sbjct: 439 PPSTAPQAVRPAQFK-EEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGT 492

Length = 614

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 29/161 (18%), Positives = 50/161 (31%), Gaps = 9/161 (5%)

Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
               A+    ++SES+          P  +PA    P                   + P 
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLP------TRIWEASGWNGPSSRPG 283

Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
           P S+ +     SP  +P    + P  S   ++   + +    +  T  +S     A    
Sbjct: 284 PASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSP 343

Query: 480 APEPVPSPA---APAPVETPSVPAEPTPTASPVQTSQPCAS 517
            P P  SP+    P P +  S    P P+ +P   +     
Sbjct: 344 GPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384

Length = 1352

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA-PVDTPVTPVASAP----PTPAE 476
           ++  + A A  +    P+ +T  E    +TPVE+ A    D   TPVA+      P+ +E
Sbjct: 20  ASNPKLAQAEEIVTTTPATSTEAEQ---TTPVESDATEEADNTETPVAATTAAEAPSSSE 76

Query: 477 TPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
           T    +P          E  +V    T T+ PV+
Sbjct: 77  TAETSDPTSEATDTTTSEARTVTPAATETSKPVE 110

Length = 814

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 30/179 (16%), Positives = 40/179 (22%), Gaps = 17/179 (9%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
           +Q       P  +P Q            P   P   PA           PAP  P     
Sbjct: 387 AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNA 446

Query: 414 TETTPA-PVSTPTETAA-ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
            +         P  T         P        +             PV     P  + P
Sbjct: 447 WQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKP--ARP 504

Query: 472 P----TPAETPGAPE---------PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
           P       E   A E         P+P P         S+ A       PV+ +   + 
Sbjct: 505 PLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563

Length = 1355

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 46/208 (22%), Positives = 70/208 (33%), Gaps = 10/208 (4%)

Query: 319 AEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKK 378
           A+Q  Y     +   +  +     +    N W+   Q    +     +  QT  +   ++
Sbjct: 416 AQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA-ASPVAAPV 437
                    V+    VEP PV     P+ PP+    E          + AA   P+  PV
Sbjct: 476 PLYQQP-QPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPV 534

Query: 438 PSP-----TTPVESPAASTPVEAPA--APVDTPVTPVASAPPTPAETPGAPEPVPSPAAP 490
             P     +    S AA  PVEA A  +P+ + V     A    A        + +   P
Sbjct: 535 KEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGP 594

Query: 491 AP-VETPSVPAEPTPTASPVQTSQPCAS 517
            P V+    P  P P    V T +  AS
Sbjct: 595 RPQVKEGIGPQLPRPKRIRVPTRRELAS 622

Length = 1355

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 34/146 (23%), Positives = 47/146 (32%), Gaps = 10/146 (6%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
           P + PAA P +  S  +       P    +  AA+V   P       + P        T 
Sbjct: 121 PRQAPAAAPVRAASIPS-------PAAQALAHAAAVRTAPRQEHALSAVPEQLFADFLTT 173

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
           APV      A      APVP+    +   A +   +     +D     +  A P      
Sbjct: 174 APVPRAPVQAPVVAAPAPVPAIAAAL--AAHAAYAQDDDEQLDDDGFDLDDALPQILPPA 231

Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTP 504
             P  V +PAAP         A P P
Sbjct: 232 ALPPIVVAPAAP-AALAAVAAAAPAP 256

Length = 559

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 8/126 (6%)

Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETT-------PAPVSTPTETAAASPVAAPVPSPTT 442
             AS+ P+ ++  PA  T       E +         P+S P    A   V A       
Sbjct: 154 TNASLFPLGLAAFPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPR 213

Query: 443 PVESPAASTPVEAPAAPVDTPVTPVASAPPTP-AETPGAPEPVPSPAAPAPVETPSVPAE 501
              SP  +       +P  T +   ++    P A T    E  P+P  P   E P   A 
Sbjct: 214 TTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANAT 273

Query: 502 PTPTAS 507
           P P AS
Sbjct: 274 PAPEAS 279

Length = 401

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 40/184 (21%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 351 KKISQTIEPSKPPAAEPSQTTSES---TEKKESSPPTVPEVKPAASVEPVPVSPVPAPST 407
           K I Q    S P    P    S+S    +++   P   P ++        P +P P PS 
Sbjct: 141 KDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSA 200

Query: 408 PPV-----ATPTETTPAPVSTPTETAAASPVAAP--VPSPTTPVESPAASTPVEAPAAPV 460
             V         +  P P      +  ++P   P  +PSP  P++   AS     P AP 
Sbjct: 201 QAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPS 260

Query: 461 DTPVTPVASAPPTPAETPGAPEPVP------SPAAPAPVETPSVPAEPTPTASPVQTSQP 514
                     P  P        PV       +P  P  +    VP  P P+ +   +  P
Sbjct: 261 SRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTP 320

Query: 515 CAST 518
            + +
Sbjct: 321 PSQS 324

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.6 bits (99), Expect = 3e-04
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 7/115 (6%)

Query: 411 ATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV-AS 469
           A P+    A  + P + AAA   AA  P+      + AA+ P +A A P      P  A+
Sbjct: 209 AAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAA 268

Query: 470 APPTPAETPGAPEPV-PSPAAPAPVETPSVPAEPT-----PTASPVQTSQPCAST 518
           APP  A  P A     P+ AA  P +  + PA+         A+P + + P A  
Sbjct: 269 APPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKA 323

Length = 357

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP----GAPEPVP 485
              + + V        + AA     AP A    P+   A +  +P   P       +   
Sbjct: 32  LRELRSLVAEGAAGPVAKAAEQM-AAPEAAEAAPLPAAAESIASPEVPPPVPPAPAQEGE 90

Query: 486 SPAAPAPVETPSVPAEPTPTASPVQTS 512
           +PAA  P   P+  A P P A PV+ S
Sbjct: 91  APAAEQPSAVPAPSAAPAP-AEPVEPS 116

Length = 931

>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
            AE   TT+ +T  +     T P    A   E    +  P            TT A   +
Sbjct: 27  QAEEIVTTTPATSTEAEQ--TTPVESDAT--EEADNTETP---------VAATTAAEAPS 73

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
            +ETA  S       + TT  E+   +      + PV+
Sbjct: 74  SSETAETSDPT-SEATDTTTSEARTVTPAATETSKPVE 110

Length = 814

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
           + P   +      AA+P +AP P+P+ P    +      APA+ V    +P   +    A
Sbjct: 75  SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASG--MSAAPASAV-EEKSPSEESATATA 131

Query: 476 ETPGAPEPVPSPAAPAP 492
                    PS + P+ 
Sbjct: 132 PES------PSTSVPSS 142

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA-PEPVPSPA-APAPVETPSVPAEPT 503
           SPA S  V+  A   D P  P     P   E PGA P  +PSPA AP P + P V     
Sbjct: 383 SPAGSPDVKKKAPEPDLP-QPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAP 441

Query: 504 PTASPVQTSQPCAST 518
              SP  ++    ++
Sbjct: 442 LPPSPQASAPRNVAS 456

Length = 620

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 30/156 (19%), Positives = 40/156 (25%), Gaps = 19/156 (12%)

Query: 359 PSKPPAAEPSQTTSES----TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPT 414
           P   P  +  +  SE     T   E +       +  AS        +         T  
Sbjct: 175 PVVKPGPQIGRYASEPAGGLTSLTEEAGKA----RYNASKALAE--DIGDTVKRIDGTEV 228

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTP 474
                        A   P  A  P       + A  TP  AP A          +    P
Sbjct: 229 PLLAPWQGDA---APVPPSEAARPKSADAETNAALKTPATAPKA----AAKNAKAPEAQP 281

Query: 475 AETPGAPEPVPSPAAP--APVETPSVPAEPTPTASP 508
                A EP P  AA   A    P++  +P P    
Sbjct: 282 VSGTAAAEPAPKEAAKAAAAAAKPALEDKPRPLGIA 317

Length = 400

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
           + PT         AP    T    +PA   P  AP+     P  P   APP P  +   P
Sbjct: 396 TIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPS-----PRVPWDDAPPAPPRSGIPP 450

Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
            P     AP   E   VP  P   AS     
Sbjct: 451 RP-----APRMPEASPVPGAPDSVASASDAP 476

Length = 624

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPA 500
           E  +AS    APAA  +      A+A    A+        P+  A      P +PA
Sbjct: 80  EGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPA 135

Length = 464

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 36/147 (24%), Positives = 44/147 (29%), Gaps = 23/147 (15%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
            + P AA      + +      +         AAS E  P +  P        TP    P
Sbjct: 483 DAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAP 542

Query: 419 APVSTPTETA---------------------AASPVAAPVPSPTTPVESPAASTPV-EAP 456
           A  +     A                     AA P AAP  +P       A   P   A 
Sbjct: 543 AARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRAR 602

Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEP 483
           AA  D P    A A    AE+ GAP P
Sbjct: 603 AATGDAPPNGAARAEQ-AAESRGAPPP 628

Length = 830

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 5/101 (4%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
           +          A  +   +        +P   P     A+      + V     PP    
Sbjct: 397 AAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAA 456

Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVE 454
            ET   PV    E A AS   AP  +P     + A  TP E
Sbjct: 457 PETVAIPVRVAPEPAVASAAPAPAAAP-----AAARLTPTE 492

Length = 618

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 31/114 (27%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
                  AA P    S       + P + P + PA    P    P P  +  P  TPT +
Sbjct: 166 FPAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPS 225

Query: 417 TPAPVSTPTETAAASPVAAPVPSPTT-PVESPAASTPVEAPAAPVDTPVTPVAS 469
           T     + T  A ++ +AAP    T     +PA  TP    A P +    P AS
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEAS 279

Length = 401

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT-PVASAPPT 473
              P+P  +P     A     P          P        P AP   P   P  ++ PT
Sbjct: 379 GVAPSPAGSPDVKKKAPEPDLP---------QPDRHPGPAKPEAPGARPAELPSPASAPT 429

Query: 474 PAETPGAPEPVPSPAAPAPVETPSV 498
           P + P      P P +P      +V
Sbjct: 430 PEQQPPVARSAPLPPSPQASAPRNV 454

Length = 620

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 390 PAASVEPVPVSPVPAPSTPP-VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
           P+ S    P S   A    P    P  T PA   TP+  A A+P  +  PSP  P +  A
Sbjct: 381 PSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD-A 439

Query: 449 ASTPVEAPAAPVDTP----VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
              P  +   P   P     +PV  AP + A    AP  +  P+  A   TPS P
Sbjct: 440 PPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE-HTPSGP 493

Length = 624

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 31/90 (34%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 405 PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE-SPAASTPVEAPAAPVDTP 463
            +T  +A     +   ++ P  TA A P   P P  T     +PAA  P   PAAP    
Sbjct: 15  WTTLAIAAVAGASAVAIALPA-TANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ 73

Query: 464 VTPVASAPPTPAETPGAPEPVP-SPAAPAP 492
                +APP P   P AP P P  P AP P
Sbjct: 74  PDDPNAAPPPPPADPNAPPPPPVDPNAPPP 103

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 30/154 (19%), Positives = 50/154 (32%), Gaps = 5/154 (3%)

Query: 366 EPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP- 424
           E   +  +S +   ++     +  P  +        +  P      T  +   A      
Sbjct: 40  EAPASAEKSIDLNGATQANAQQPAPGPTSAENTSQDLSLPPISSTPTQGQEPLAQDGQQR 99

Query: 425 TETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
            E       AA  P   + + + A ++ +    A V     PV +A    AE P    PV
Sbjct: 100 VEVQGDLNNAAVQPQNLSQLNNVAVTSTLPTEPATV----APVRNASVPTAERPAITRPV 155

Query: 485 PSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
            + A   P   P      T T + VQT+ P  + 
Sbjct: 156 RAQAVSEPAVEPKAAKTATATEAKVQTASPAQTP 189

Length = 292

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTP--VEAPAAPVDTPVTPVASAPPTP-AETPGA 480
           P  T   +P           V +P A     V A A P  T VT  A A   P A    A
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 481 PE-PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
                  PAAPAP  T     +     +PV       +
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARA 457

Length = 830

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 37/158 (23%), Positives = 55/158 (34%), Gaps = 7/158 (4%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP---T 414
            P  PPAA P    +        +  +     P +S E    +P   P+ PP +TP    
Sbjct: 143 SPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAA 202

Query: 415 ETTPAPVSTPTETAAASPVAAPVPSPTTPVE----SPAASTPVEAPAAPVDTPVTPVASA 470
              P   S+P   +A+SP  AP  S            ++S        P +    P  + 
Sbjct: 203 SPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
              P     A       + P P  + S P E +P+ SP
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSP 300

Length = 1352

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 24/75 (32%), Positives = 27/75 (36%)

Query: 409 PVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
           P     +  P P    T  AA +P A P P P     +P    P  AP  P   P  P  
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP 93

Query: 469 SAPPTPAETPGAPEP 483
                 A  P APEP
Sbjct: 94  PPVDPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 4/101 (3%)

Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP----VD 461
           +    A P ++      TP  +AAA+P AA      +P     A       +A     V 
Sbjct: 78  NDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAVPGTGVT 137

Query: 462 TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
             VT       T A          + A      T       
Sbjct: 138 GRVTKEDIIKKTEAPASAQQPAPAAAAKAPANFTRPEERVK 178

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 2/78 (2%)

Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
           A +            +        P     +   +       TP  P    SP  P P E
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVPAE 420

Query: 495 TPSVPAEPTPTASPVQTS 512
                  P   A+    S
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 40/184 (21%), Positives = 56/184 (30%), Gaps = 34/184 (18%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP--------- 408
           E ++     P    + +     + P  V     A +   +P  P P P  P         
Sbjct: 270 ETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDD 329

Query: 409 ---------PVATPTETTPAPVST---PTETAAAS----------PVAAPVPSPTTPVES 446
                    P+  P +  P        PT T  +S          P  A +P+      +
Sbjct: 330 EDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPT-RKRRSA 388

Query: 447 PAASTPVEAPAAPVDTP--VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
             A+TP        D      PV ++ PTPA TP      P PA P P   P     P P
Sbjct: 389 RHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAP 448

Query: 505 TASP 508
               
Sbjct: 449 PPER 452

Length = 3151

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 40/148 (27%), Positives = 47/148 (31%), Gaps = 21/148 (14%)

Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEV---KPAASVEPV-PVSPVPAPSTPPVATPTE 415
             P    P              PP  P     +PAA+     P +  P  + PP A P  
Sbjct: 684 MLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPG- 742

Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
              A         A  P AAP  +   P  +P A TP   P             APP P 
Sbjct: 743 --RARPPAAAPGRARPPAAAPGRARP-PAAAPGAPTPQPPP------------QAPPAPQ 787

Query: 476 ETP-GAPEPVPSPAAPAPVETPSVPAEP 502
           + P GAP P P P A          A P
Sbjct: 788 QRPRGAPTPQPPPQAGPTSMQLMPRAAP 815

Length = 991

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 1/130 (0%)

Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTET-AAASPVAAPVPSPTTPV 444
           P  +    V  +P      P T  +           +TPT + AA  P    +P+     
Sbjct: 51  PSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGP 110

Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
                   +     PV     P  S    PA+     +      APA  + PS       
Sbjct: 111 TIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQSAQK 170

Query: 505 TASPVQTSQP 514
                   QP
Sbjct: 171 NDESQLQQQP 180

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 407 TPPVATPTETTPAPVSTPTETAAASPVA---APVPSPTTPVESPAASTPVEAPAA-PVDT 462
           TPP A     T + +      AAA+  A   A        V  P A +P    ++ P D 
Sbjct: 283 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDI 342

Query: 463 PVTPVASAPPT-PAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
               V S+      E P  P+  P+   P P+E P+ P  P   A P   + P
Sbjct: 343 GNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPT-PVPPPGLAIPSLVAPP 394

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 32/130 (24%), Positives = 44/130 (33%), Gaps = 8/130 (6%)

Query: 369 QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
           Q  +  T    +  P+    + +A        P PA     V T + T            
Sbjct: 292 QIDTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSAT---TTQASAVAL 348

Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPS-P 487
           +++ V     +    V  PAA  PV     P+ T  T  +S   T   T  A  P  S P
Sbjct: 349 SSAGVLPSDVTLPGTVALPAAE-PVNMQPQPMSTTETQQSS---TGNITSTANGPTTSLP 404

Query: 488 AAPAPVETPS 497
           AAPA     S
Sbjct: 405 AAPASNIPVS 414

Length = 421

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 15/77 (19%), Positives = 18/77 (23%)

Query: 376 EKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAA 435
               S                    P P   + P      TTP+P           P   
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Query: 436 PVPSPTTPVESPAASTP 452
             PSPT P  +  A   
Sbjct: 422 TEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich region

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 33/123 (26%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 352 KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
           K+S+    SK    +P+    E    +E +   V   K       V V+PVP     PV 
Sbjct: 32  KVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEVEVIIEKEPVP--AVAVAPVPVAVVAPVV 89

Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST-PVEAPAAPVDTPVTPVASA 470
            P      PV    E  A+   + P PSP    +   A   P  A A  V    +  A  
Sbjct: 90  APKPKKSQPVM-SQEKTASPQKSVPAPSPKEKKKKKVAKVEPAPAKAVAVPVLASKSAPV 148

Query: 471 PPT 473
           P T
Sbjct: 149 PAT 151

This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Length = 151

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 41.7 bits (97), Expect = 8e-04
 Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 2/137 (1%)

Query: 377 KKESSPPTVPEVKPAASVEPVPVSPVPA-PSTPPVATPTETTPAPVSTPTETAAASPVAA 435
           K   +  +V  V     VEP   + VP  PS PP +T    + A  ++ T T   S    
Sbjct: 424 KAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLP 483

Query: 436 PVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVET 495
              SPT+   S   +     PA       T   +   +      +P P+           
Sbjct: 484 EDTSPTSRTTSATPNATSPTPAVTTPN-ATSPTTQKTSDTPNATSPTPIVIGVTTTATSP 542

Query: 496 PSVPAEPTPTASPVQTS 512
           P+         SP  T 
Sbjct: 543 PTGTTSVPNATSPQVTE 559

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
           SKP           +T     +P   P   PA+ +   P S V    +P   + T T P 
Sbjct: 75  SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVE-EKSPSEESATATAPE 133

Query: 420 PVSTPTETAAASPVAAPV 437
             ST   ++ +   +  V
Sbjct: 134 SPSTSVPSSGSDAASTLV 151

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (98), Expect = 8e-04
 Identities = 28/138 (20%), Positives = 36/138 (26%), Gaps = 28/138 (20%)

Query: 388 VKPAASVEPVPVSPVP----APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
           V+    V P P         AP            PA    P     A P   P P+    
Sbjct: 374 VRNDGGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPG----ARPAELPSPA---- 425

Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP------------VPSPAAPA 491
               +A TP + P      P+ P   A        G P                + +   
Sbjct: 426 ----SAPTPEQQPPVARSAPLPPSPQASAPRNVASGKPGVDLGSWQGKFMNFTRNGSRKQ 481

Query: 492 PVETPSVPAEPTPTASPV 509
           PV+  S  A  T     V
Sbjct: 482 PVQASSSDAAQTGVFEGV 499

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%)

Query: 428 AAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSP 487
           A  S +A              +  P     +   T       +PP    +P  P P    
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 488 AAPAPVETPSVPAEPT 503
                    +  A P+
Sbjct: 423 EPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
           ++ +E A  +  A      TTPV       P   PA PV  P   VA+A    A  P AP
Sbjct: 100 TSMSEPATENKPAEV----TTPV--EPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAP 153

Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
               + +     +    P E        +T+     T
Sbjct: 154 AKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPT 190

Length = 209

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 12/126 (9%)

Query: 356 TIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTE 415
               +      P++      E  E  P   P  +P    EP P  P   P         +
Sbjct: 41  VFLLAAKVLEAPTEEPQPEPEPPEEQPK--PPTEPETPPEPTPPKPKEKPKPEKKPKKPK 98

Query: 416 TTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPA 475
             P P   P       P   P P P    + P + T  +APAAP      P A++    A
Sbjct: 99  PKPKPKPKPK------PKVKPQPKP----KKPPSKTAAKAPAAPNQPARPPSAASASGAA 148

Query: 476 ETPGAP 481
             P A 
Sbjct: 149 TGPSAS 154

Length = 244

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 41.5 bits (97), Expect = 9e-04
 Identities = 38/174 (21%), Positives = 55/174 (31%), Gaps = 19/174 (10%)

Query: 351 KKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV 410
           KK+ +  E S     E +   SE  +  ES          AA++EP   +   AP+T   
Sbjct: 486 KKLKEEQE-SLAKELEATAHKSEIKKIAESEFKNAGAKTAAANIEPNCSADAAAPATKRA 544

Query: 411 ATPT--------------ETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
              T                  +P    + T+     AA   S T    + A  T +   
Sbjct: 545 RPETKTELEAVVRFPYQIRNMESPAFVHSFTSTTLAAAAGQGSDTAEALAGAIETLLTQA 604

Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
           +A       P  + P   +     P   P P AP     P   A    T+ P Q
Sbjct: 605 SAQPAGLSLPAPAVPVNAS----TPASTPPPLAPQEPPQPGTSAPSLETSLPQQ 654

Length = 663

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.4 bits (98), Expect = 0.001
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 456 PAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPC 515
           PAAP+  P  P  SA P  +       P  + A P     P  PA   P  +P       
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQA-TAAPTAAVAPPQAPAVPPPPA-SAPQQAPAVPLPET 418

Query: 516 AS 517
            S
Sbjct: 419 TS 420

Length = 647

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 445 ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAP--APVETPSVPAEP 502
            +        APAAPVDT  T   +     A  P       +  AP  A V+T + PA  
Sbjct: 167 STTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPA 226

Query: 503 TPTASPVQTSQPCAS 517
            P         P   
Sbjct: 227 APATPDGAAPLPTDQ 241

Length = 331

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 34/98 (34%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 358 EPSKPPAAE---PSQTTSESTEKKESSPPTVPEVKPAA-SVEPVPVSPVPAPSTPPVATP 413
           EP   PAA    P+Q    + E   +     P + PA  +    PV P PAP  PP   P
Sbjct: 52  EPDMMPAATQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKP 111

Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
            E  P P   P +   A P   P P P   VE  AA T
Sbjct: 112 VEK-PKPKPKPQQKVEAPPAPKPEPKP--VVEEKAAPT 146

Length = 226

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 27/90 (30%), Positives = 32/90 (35%), Gaps = 9/90 (10%)

Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
           TV    P + ++     P  AP+    A        P           P AA  P+P   
Sbjct: 108 TVEVGAPLSEIDTGGAPPAAAPAAA--AAAKAEKTTPEKPKAAAPTPEPPAASKPTP--- 162

Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPT 473
               AA  P  APAA    P TPVA A P 
Sbjct: 163 --PAAAKPPEPAPAAK--PPPTPVARADPR 188

Length = 418

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 412 TPTETTPAPVSTPTETAAASP-VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASA 470
             T    A V+  +  A A P  A   P+P  P  S AA+ P  A   P   P  P A  
Sbjct: 14  LWTTLAIAAVAGASAVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQ 73

Query: 471 PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPV 509
           P  P   P  P P    A P P   P+ P  P P    +
Sbjct: 74  PDDPNAAP-PPPPADPNAPPPPPVDPNAPPPPAPEPGRI 111

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 408 PPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPV 467
             ++     +     TP    +  P      +P T            +P     +P  PV
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQA-----ATTPSPPPAKASPPIPV 417

Query: 468 ASAPPTPAETPGAPEPVPSP 487
            + P  P+ TP A      P
Sbjct: 418 PAEPTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 20/79 (25%), Positives = 28/79 (35%)

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
           ++   A  P P      P A TP          P TP    P     +  AP  +P+ ++
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 490 PAPVETPSVPAEPTPTASP 508
           P P         PT  +SP
Sbjct: 576 PPPPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
           P+   +    A+A     P P+P+ P      S P    AA   TP  P A A P     
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAAT--TPSPPPAKASPPIPVP 418

Query: 478 PGAPEPVPSPAAPAPVETPS 497
               EP P+P A A    PS
Sbjct: 419 AEPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
           A  + AP+  P  P   P      ++PA  V TP      A P PA     P P  +P  
Sbjct: 75  ARKILAPLTPPAPP--EPVTPPTAQSPAPAVPTPPPTSTPAVP-PAPAAAVPAPAAAPPP 131

Query: 490 PAPVETPSVP 499
             P + P  P
Sbjct: 132 SDPPQPPRAP 141

Length = 141

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 2/87 (2%)

Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP-VASAPPTPAETPGAPEPVPSP 487
              P A   P P++    P  S+ +   A+       P V+  P  P  +P  P   P  
Sbjct: 180 GNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP-SAPPA 238

Query: 488 AAPAPVETPSVPAEPTPTASPVQTSQP 514
           + PAP   P +     P   P Q   P
Sbjct: 239 SIPAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 396 PVPVSPVPAPSTPPVATPTETTP-APVSTPTETAAASPVA-APVPSPTTPVESPAASTPV 453
            +P +  P P +     P  ++  AP ++ T       V+  P     +P +  A   P 
Sbjct: 181 NIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSA---PP 237

Query: 454 EAPAAPVDTPVTPVASAPPTPAETPGAP 481
            +  AP   PV    + PP P   P  P
Sbjct: 238 ASIPAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 16/131 (12%)

Query: 369 QTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETA 428
           Q      E       +V  V             V   ++    +   T+ +P S  T   
Sbjct: 126 QAWLAQEEPPTLPDQSVASVSQ-------NSQDVSLATSSTTPSEGTTSASPSSATTSFT 178

Query: 429 AASPVAAPVPSPTTPVE----SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPV 484
                 APV +PT         PAA     + A       T           T G+    
Sbjct: 179 PTVTAIAPVVAPTAKPVTVPKQPAADLAASSTAPAAKEMATGQ-----EAVPTAGSGVTT 233

Query: 485 PSPAAPAPVET 495
            +  + A V  
Sbjct: 234 VAGKSAALVIN 244

Length = 284

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 37/169 (21%), Positives = 52/169 (30%), Gaps = 17/169 (10%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAA--------SVEPVPVSPVPAPSTPP 409
           +P   P  +P  +   +  K E  PP  PE +P          S+E V          P 
Sbjct: 112 DPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQ 171

Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPS--PTTPVESPAASTPVEAPAAPVDTPVTPV 467
           +  P +        P + A         P   P  P   P    P +   AP     +  
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAP-----SQA 226

Query: 468 ASAPPTPAETPGAPEPVPSPAAPAPVET--PSVPAEPTPTASPVQTSQP 514
            + PP P + P  P P+  P  P   +   P  P  P     P Q    
Sbjct: 227 PAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQ 275

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 390 PAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA 449
           P+    P P   V   S   + +  + T APV++     A + +A  V   + P  +  +
Sbjct: 207 PSVQPAPAPQGDVLPVSNSTLKS-EDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTAPS 265

Query: 450 STPVEAPAAPVDTPVTPVASA 470
           S P  APAA         +SA
Sbjct: 266 SAPATAPAAAAPQAAATSSSA 286

Length = 361

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
           S P +T+  +   A  P+P  PV++   ++   A A      V P  +A   P++     
Sbjct: 161 SVPLDTSTTTD-PATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQAN--- 216

Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
             V + A PAP    +              S P A  
Sbjct: 217 --VDTAATPAPAAPATPDGAAPLPTDQAGVSTPAADP 251

Length = 331

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVP-VSPVPAPSTPPVATPTETTP 418
           +  PA  P+      T     +    P V  A +    P  + V APS   V T     P
Sbjct: 169 TTDPATTPAPAAPVDTT---PTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAA 449
           A  +TP   A      A V   +TP   P A
Sbjct: 226 AAPATPDGAAPLPTDQAGV---STPAADPNA 253

Length = 331

>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1)

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 11/167 (6%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPV--A 411
             T+  + P +  P+ TT  ST  +++SP +        +  P P    P  ++P     
Sbjct: 461 GPTVSTADPTSGTPTGTT-SSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATSPTTQKT 519

Query: 412 TPTETTPAP---VSTPTETAAASPVAAPVP----SPTTPVESPAASTPVEAPAAPVDTPV 464
           + T    +P   V   T TA + P          SP    ESP  +T      +      
Sbjct: 520 SDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNTNTPVVTSAPSVLT 579

Query: 465 TPVASAPPTPAETPGAPEP-VPSPAAPAPVETPSVPAEPTPTASPVQ 510
           + V +       +P + +P +PS +   P    +       +A P  
Sbjct: 580 SAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTG 626

This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo. Length = 830

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 358 EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVAT----P 413
            P+   AA+  +TT E  +    +P      KP       P  P PA   PP       P
Sbjct: 128 APAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADP 187

Query: 414 TET 416
            ET
Sbjct: 188 RET 190

Length = 418

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 4/79 (5%)

Query: 429 AASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPA 488
            +    A  P+  TP  +P+       P+AP         S PP  A  P          
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPP----IPVPAE 420

Query: 489 APAPVETPSVPAEPTPTAS 507
              P  TP   A   P + 
Sbjct: 421 PTEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 414 TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
                A    P+E  AA    AP P+  T   +          +AP     T   +  P 
Sbjct: 336 LHALLALGGAPSEGVAAVAPPAPAPADLTQRLNRLEKEVRSLRSAPT-AAATAAGAPLPD 394

Query: 474 PAETP-GAPEPVPSPAAPAPVETPSVPA 500
               P G P P P+ +A AP       A
Sbjct: 395 FDPRPRGPPAPEPARSAEAPPLVAPAAA 422

Length = 504

>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 426  ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD--TPVTPVASAPPTPAETP---GA 480
            +T +     +P+ +    ++S     PV      V    PV P   +PP  +  P    A
Sbjct: 1111 QTDSNIVKLSPLATQAPVIKSVVTQAPVVQVTISVAPAAPVLPAVVSPPVVSAAPAQSVA 1170

Query: 481  PEPVPSPAAPAPVETPSV-PAEPTPTASPVQTSQPCAST 518
                 +P A  P+  P     +  P+ +     Q   + 
Sbjct: 1171 TAVAMAPVAEVPIAVPVQQSVDYMPSVAQAAAPQASVND 1209

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
             PP A     TPA  + P       P AAP   P  P   PAA+ P  APA P      
Sbjct: 382 PAPPSAAWGAPTPAAPAAPP------PAAAPPVPPAAP-ARPAAARPAPAPAPPA----- 429

Query: 466 PVASAPPTPAETPGAPEPVPS 486
             A+APP  +  P A      
Sbjct: 430 --AAAPPARSADPAAAASAGD 448

Length = 576

>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 20/88 (22%), Positives = 29/88 (32%)

Query: 364 AAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVST 423
                  T+    K+    P  P+       +PV  +P       PVA+           
Sbjct: 146 QTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPA 205

Query: 424 PTETAAASPVAAPVPSPTTPVESPAAST 451
           P ETA  +PV    P+ TT   +    T
Sbjct: 206 PKETATTAPVQTASPAQTTATPAAGGKT 233

Length = 328

>gnl|CDD|237782 PRK14666, uvrC, excinuclease ABC subunit C; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
           P +   E    +P A    +   P        P  +       PV PVA+A P  A  P 
Sbjct: 317 PDTEGREGDDLAPTAVCTDAGLLPDTPLLPDAPEGSSD-----PVVPVAAATPVDASLPD 371

Query: 480 APEPVPSPAAPAPV-ETPSVPAEPTPTASP 508
                 +P + A V       A+PT  A+ 
Sbjct: 372 V-RTGTAPTSLANVSHADPAVAQPTQAATL 400

Length = 694

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 8/97 (8%)

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
           STPT +AA+S       SP+T V +P+ S P     +P  TP   V+ +   PA   G+P
Sbjct: 571 STPTGSAASSNTTFSSDSPSTVV-APSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSP 629

Query: 482 EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
                   P+  E+    A  T TASP ++S   AST
Sbjct: 630 -----STTPSSPESSIKVAS-TETASP-ESSIKVAST 659

Length = 670

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 22/126 (17%), Positives = 28/126 (22%), Gaps = 16/126 (12%)

Query: 386 PEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVE 445
             ++ A +V+P    P P P      T     P P                   P     
Sbjct: 80  RPIRIAITVDPSAGEPAPPPPHAR-RTSEPELPRP---GRRPYEGYGGPRADDRPPGLPR 135

Query: 446 SPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVP---SPAAPAPVETPSVPAEP 502
                T    PA P            P P   P A +            P    + PA  
Sbjct: 136 QDQLPTAR--PAYPAYQQ-------RPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY 186

Query: 503 TPTASP 508
            P    
Sbjct: 187 APEQER 192

Length = 617

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 35/176 (19%), Positives = 43/176 (24%), Gaps = 21/176 (11%)

Query: 359  PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
            P  P    P++            P       P A     P     AP+  P     E   
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAP----PAPSRLAPAILPDEPVGEPVH 2530

Query: 419  APVST---------PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
              + T           +     P   P   P  P  S     P   P+ P  T       
Sbjct: 2531 PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590

Query: 470  APPTPA--ETPGAP------EPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
            APP  A    P            PSP  P        P  P+P A+      P   
Sbjct: 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 5/124 (4%)

Query: 397 VPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAP 456
           +        +   VA            P       P      + +    + + ST   A 
Sbjct: 43  LVSDSAELAAVTVVAG---AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPAS 99

Query: 457 AAPV--DTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
            A     TP  P +  PP P   P +P P P+P     +     P  P   + P   + P
Sbjct: 100 PAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASP 159

Query: 515 CAST 518
            A  
Sbjct: 160 AAVA 163

Length = 1352

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 410 VATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVAS 469
             + + +  A    P + +   P   P P P     +P  + P   P A   +   P   
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTP-PLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570

Query: 470 APPTPAETPGAPEPVPSPAAPAPVET 495
              +    P   EP PSP   +  E 
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPEE 596

Length = 620

>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich region

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 30/121 (24%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 375 TEKKESSPP-TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
           ++KKE  P   +PE +P   V  V V     P            P PV+      A  P 
Sbjct: 40  SKKKEEKPNGKIPEHEPNQEVTEVEVIIEKEP-----VPAVAVAPVPVAVVAPVVAPKPK 94

Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
            +          SP  S P  +P       V  V  AP      P     + S +AP P 
Sbjct: 95  KSQPVMSQEKTASPQKSVPAPSPKEKKKKKVAKVEPAPAKAVAVP----VLASKSAPVPA 150

Query: 494 E 494
            
Sbjct: 151 T 151

This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Length = 151

>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 5/120 (4%)

Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT--PVESPAASTPVEAPA 457
                 +  P        P  ++    +A                   +   +   +   
Sbjct: 154 DNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPDDAP 213

Query: 458 APVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
                P+TP+A+     AE    P PV + A+P          +P PTA+    S P  S
Sbjct: 214 GTPAQPLTPLAAEAQAKAEVISTPSPVTAAASPTIT---PHQTQPLPTAAAPVLSAPLGS 270

Length = 408

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 410 VATPTETTPAPVSTPT-ETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
           +          +  P   T+AA+    P P+P       A+  P  A A        P  
Sbjct: 15  INLIIANLNTNIPIPELHTSAATQKPDPAPAPH----QAASRAPDPAVAPTSAASRKPDL 70

Query: 469 SAPPTPAETPGAPEPVPSP-----AAPAPVETPSVPAEPTPTASPVQTSQPCA 516
           +  PTPA +    +P P+P      AP P   P + A P P A+   TS   A
Sbjct: 71  AQAPTPAASE-KFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQA 122

Length = 566

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 30/168 (17%), Positives = 42/168 (25%), Gaps = 61/168 (36%)

Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP------------------- 443
            A +  P A       A  +     AA +  AA                           
Sbjct: 81  AAAAAAPAAAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVEVKVPDIGEITEVEVIEWLV 140

Query: 444 --------------VESPAASTPVEAPAA--------------PVDTPV--------TPV 467
                         VE+  A+  + +P A               V + +         P 
Sbjct: 141 KVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAAAPA 200

Query: 468 ASAPPTPAETPGAPEPVPSPA-APAPVETPSVPAEPTPT-----ASPV 509
           A+A P  A    A    P+PA A A     + PA          ASP 
Sbjct: 201 AAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPA 248

Length = 547

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 39.1 bits (90), Expect = 0.003
 Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 438 PSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
           PSP     +PA      A  AP  T   P  + PP  A T   P   P+PA PAP   PS
Sbjct: 84  PSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPS 143

Query: 498 V----PAEPTPTASPVQTSQP 514
                PA P PT  P   ++P
Sbjct: 144 TRQCPPAPPLPTPKPAPAAKP 164

Length = 280

>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 31/118 (26%), Positives = 41/118 (34%), Gaps = 9/118 (7%)

Query: 394 VEPVPVSPVPA---PSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
           V  +P+ P P         +    +    P   P E  A     A   +  +    P A 
Sbjct: 38  VAAIPLPPKPQGDRDEPRVLPAVVQVVALPT-QPPEGVAQEIQDAGDAAAASVDPQPVAQ 96

Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASP 508
            PVE+  A V     PVA+  P P + P  P     PA P P   P   AEP    + 
Sbjct: 97  PPVESTPAGV-----PVAAQTPKPVKPPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTG 149

Length = 226

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 26/114 (22%), Positives = 33/114 (28%), Gaps = 3/114 (2%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEV-KPAASVEPVPVSPVPAPSTPPVATPTETTPA- 419
           P  A        S     +     P          PVP S  P P+  PV       PA 
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASV-PTPAPTPVPASAPPPPAT 433

Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
           P+ +    +   P   P   P  P   PA   P +A    +D         PP 
Sbjct: 434 PLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPG 487

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 38/152 (25%), Positives = 51/152 (33%), Gaps = 16/152 (10%)

Query: 359 PSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTP 418
           P+  P +     ++     K +S PT    + +A     P +  P         P    P
Sbjct: 357 PTWTPPSSLEDLSAGRHHPKRASLPT--RKRRSARHAATPFARGPGGDDQT--RPAAPVP 412

Query: 419 APVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETP 478
           A V TP      +PV A  P P      PA   P   P +  D P  P    PP PA  P
Sbjct: 413 ASVPTPA----PTPVPASAPPP------PATPLPSAEPGSD-DGPAPPPERQPPAPATEP 461

Query: 479 GAPEPVPSPAAPAPVETPSVPAEPTPTASPVQ 510
              +P  +            P EP P A   +
Sbjct: 462 APDDPDDATRKALDALRERRPPEP-PGADLAE 492

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 19/181 (10%)

Query: 357 IEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTET 416
                  A+      S       SSP   P    A            + S+     P   
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254

Query: 417 TP----APVSTPTETAAASP--VAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP---- 466
            P    AP++ PT    AS     +  P P +   SP   +P  +P++P   P       
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314

Query: 467 ---------VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
                     +S+  + +        V    +P+   +PS P  P   +SP +  +P  +
Sbjct: 315 SSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRA 374

Query: 518 T 518
            
Sbjct: 375 P 375

Length = 1352

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 426 ETAAASPVAAPVPSPTTPVESPAASTPV-EAPAAPVDTPVTPVASAPPTPAETPGA---P 481
           E          +P+   P E  A +    +A A  +D       + P  P   P     P
Sbjct: 52  EPDMMPAATQALPT--QPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP 109

Query: 482 EPVPSP-AAPAPVETPSVPAEPTPTASPVQTSQP 514
           +PV  P   P P +    P  P P   PV   + 
Sbjct: 110 KPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143

Length = 226

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 6/76 (7%)

Query: 424 PTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
           P   A A+  AA     T      AA TP E PAA       P   A   P E   A +P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTP-EPPAAS-----KPTPPAAAKPPEPAPAAKP 177

Query: 484 VPSPAAPAPVETPSVP 499
            P+P A A      VP
Sbjct: 178 PPTPVARADPRETRVP 193

Length = 418

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 38/137 (27%), Positives = 47/137 (34%), Gaps = 31/137 (22%)

Query: 382 PPTVPEVKPAASV------------EPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAA 429
           P TV  +  AA+V            E V  + V  P     ATP+ + P  +      ++
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSS 350

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP--VPSP 487
           A   A  VP             P  APA     P+       PTP   PG   P  V  P
Sbjct: 351 AKKEAEEVPP-----------LPQAAPAVVKPGPMEI-----PTPVPPPGLAIPSLVAPP 394

Query: 488 AAPAPVE-TPSVPAEPT 503
              AP E  PS  A P 
Sbjct: 395 GLVAPTEINPSFLASPR 411

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|234022 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 30/106 (28%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 410  VATPTETTPAPV-STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVA 468
            V      T APV  +    A    V     +P  PV     S PV +  AP  +  T VA
Sbjct: 1117 VKLSPLATQAPVIKSVVTQAPVVQVTIS-VAPAAPVLPAVVSPPVVSA-APAQSVATAVA 1174

Query: 469  SAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQP 514
             AP           P+  P   +    PSV     P AS V  S  
Sbjct: 1175 MAPVAEV-------PIAVPVQQSVDYMPSVAQAAAPQAS-VNDSAI 1212

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. Length = 2582

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 392 ASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAST 451
           A   P      P P+ P    P    P P + P   AAA P  AP P       +P A +
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPP---AAAAPPARS 437

Query: 452 PVEAPAA 458
              A AA
Sbjct: 438 ADPAAAA 444

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 437 VPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
            P+P +            AP      PV P A A   PA    AP P P  AA  P  + 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPAR--PAAARPAPAPAPPAAAAPPARSA 438

Query: 497 SVPAEPT 503
              A  +
Sbjct: 439 DPAAAAS 445

Length = 576

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 400 SPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAP 459
           S     +     T +  +P+ V  P+ +  A  + +P  +P+  + SP+ S P     +P
Sbjct: 571 STPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSK-IVSPSTSPPASHLGSP 629

Query: 460 VDTPVTPVASAPPTPAETPGAPE 482
             TP +P +S      ET  +PE
Sbjct: 630 STTPSSPESSIKVASTET-ASPE 651

Length = 670

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
PLN00176	333	galactinol synthase	100.0
cd02537	240	GT8_Glycogenin Glycogenin belongs the GT 8 family	100.0
cd06914	278	GT8_GNT1 GNT1 is a fungal enzyme that belongs to t	100.0
cd00505	246	Glyco_transf_8 Members of glycosyltransferase fami	99.97
PF01501	250	Glyco_transf_8: Glycosyl transferase family 8; Int	99.96
cd04194	248	GT8_A4GalT_like A4GalT_like proteins catalyze the	99.96
PRK15171	334	lipopolysaccharide 1,3-galactosyltransferase; Prov	99.95
cd06429	257	GT8_like_1 GT8_like_1 represents a subfamily of GT	99.93
COG1442	325	RfaJ Lipopolysaccharide biosynthesis proteins, LPS	99.92
cd06431	280	GT8_LARGE_C LARGE catalytic domain has closest hom	99.91
cd06432	248	GT8_HUGT1_C_like The C-terminal domain of HUGT1-li	99.8
PLN02523	559	galacturonosyltransferase	99.79
cd06430	304	GT8_like_2 GT8_like_2 represents a subfamily of GT	99.79
PLN02718	603	Probable galacturonosyltransferase	99.79
COG5597	368	Alpha-N-acetylglucosamine transferase [Cell envelo	99.74
PLN02769	629	Probable galacturonosyltransferase	99.73
PLN02867	535	Probable galacturonosyltransferase	99.68
PLN02742	534	Probable galacturonosyltransferase	99.67
PLN02659	534	Probable galacturonosyltransferase	99.67
PLN02829	639	Probable galacturonosyltransferase	99.66
PLN02870	533	Probable galacturonosyltransferase	99.64
PLN02910	657	polygalacturonate 4-alpha-galacturonosyltransferas	99.6
KOG1950|consensus	369		99.36
PF11051	271	Mannosyl_trans3: Mannosyltransferase putative; Int	98.32
PF03407	212	Nucleotid_trans: Nucleotide-diphospho-sugar transf	97.35
KOG1879|consensus	1470		96.53
PF05637	239	Glyco_transf_34: galactosyl transferase GMA12/MNN1	93.38
KOG1928|consensus	409		92.0
KOG1950|consensus	369		90.59
PF00535	169	Glycos_transf_2: Glycosyl transferase family 2; In	86.25
PF07801	142	DUF1647: Protein of unknown function (DUF1647); In	86.0
cd04186	166	GT_2_like_c Subfamily of Glycosyltransferase Famil	85.04
PHA03247	3151	large tegument protein UL36; Provisional	82.69
cd02525	249	Succinoglycan_BP_ExoA ExoA is involved in the bios	82.49
PHA03247	3151	large tegument protein UL36; Provisional	82.45
cd00761	156	Glyco_tranf_GTA_type Glycosyltransferase family A	82.13

>PLN00176 galactinol synthase

Probab=100.00  E-value=1.6e-46  Score=386.59  Aligned_cols=236  Identities=25%  Similarity=0.390  Sum_probs=196.5

Q ss_pred             CCCEEEEEE-ecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCc
Q psy7288           4 VTGTAWVTL-ATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPD   82 (518)
Q Consensus         4 ~~~~A~VTl-~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~   82 (518)
                      .+++||||+ ++|++|++||+||++|||++++.+++||||+++|+++.++.|++.|+.|++|+.+...+.  ...+.+++
T Consensus        20 ~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~--~~~~~~~~   97 (333)
T PLN00176         20 PAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPEN--QTQFAMAY   97 (333)
T ss_pred             cCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCccc--ccccccch
Confidence            468999995 579999999999999999999999999999999999999999999999999988865432  22234567


Q ss_pred             hhhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCC--CcccccC------------------------CCCC----
Q psy7288          83 LGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE--ELSAAPD------------------------AGWP----  132 (518)
Q Consensus        83 ~~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~--elaAapD------------------------~gwp----  132 (518)
                      +..+|+||+||+|++|+||||||+|+||++||||||+++  .++|+.|                        .+||    
T Consensus        98 ~~i~~tKl~iw~l~~ydkvlyLDaD~lv~~nid~Lf~~~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~~~g  177 (333)
T PLN00176         98 YVINYSKLRIWEFVEYSKMIYLDGDIQVFENIDHLFDLPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPAELG  177 (333)
T ss_pred             hhhhhhhhhhccccccceEEEecCCEEeecChHHHhcCCCcceEEEecccccccccccccccccccccchhhccchhhcc
Confidence            788999999999999999999999999999999999985  3666655                        2333    


Q ss_pred             ----CCCCceEEEEeCChHHHHHHHHHHHhcCCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCC
Q psy7288         133 ----DCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADS  208 (518)
Q Consensus       133 ----~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~  208 (518)
                          .|||||||||+|+.++|++|++++.....+.++|||+   |      |.+|.+..           +.|     |+
T Consensus       178 ~~~~~yFNSGVlvinps~~~~~~ll~~l~~~~~~~f~DQD~---L------N~~F~~~~-----------~~L-----p~  232 (333)
T PLN00176        178 PPPPLYFNAGMFVFEPSLSTYEDLLETLKITPPTPFAEQDF---L------NMFFRDIY-----------KPI-----PP  232 (333)
T ss_pred             CCCCCeEEeEEEEEEcCHHHHHHHHHHHHhcCCCCCCCHHH---H------HHHHcCcE-----------EEC-----Cc
Confidence                4999999999999999999999988776778999999   9      99999742           678     99


Q ss_pred             ccccccccccccc--ccCCCceEEcccC-CCCCCCccccchhhhhhhhhHHHhhhhhhhcc
Q psy7288         209 AFGTSTITSTSSS--VSGGGLQIAHPRA-HSSPASLQQTYASAQQQHQQHLKQRSYDITTV  266 (518)
Q Consensus       209 ~YN~~~~~~y~y~--~~~~~~kIiHf~g-~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~~  266 (518)
                      +||++....+.+.  ...++++||||+| ..|||+...............+.++||++|+.
T Consensus       233 ~YN~~~~~~~~~~~~~~~~~vkIIHY~~~~~KPW~~~~~~~~~~~~~~~~~~~~Ww~~~~~  293 (333)
T PLN00176        233 VYNLVLAMLWRHPENVELDKVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYND  293 (333)
T ss_pred             hhcCchhhhhhChhhcccCCcEEEEeeCCCCCCCCCCCcccCCChHHHHHHHHHHHHHhcc
Confidence            9999876555441  1256899999996 58999976544333334557889999999953

>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

Probab=100.00  E-value=2.4e-40  Score=328.13  Aligned_cols=234  Identities=40%  Similarity=0.608  Sum_probs=196.9

Q ss_pred             EEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCchhhh
Q psy7288           7 TAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGIT   86 (518)
Q Consensus         7 ~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~~~t   86 (518)
                      +||||+++|++|+.+|+|+++||++++++++++|+++.+++++.++.|++.+..++.|+.++..+...  ...+.++..+
T Consensus         1 ~ay~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~~~~~~~--~~~~~~~~~~   78 (240)
T cd02537           1 EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPIDPPDSAN--LLKRPRFKDT   78 (240)
T ss_pred             CEEEEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCccCCcchhh--hccchHHHHH
Confidence            49999999999999999999999999999999999999999999999999999988888877554322  1123456789


Q ss_pred             hHhHhhhhccCcCeEEEecCCeEEcCCChhhhCC-CCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCCCCcC
Q psy7288          87 FTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDR-EELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDA  165 (518)
Q Consensus        87 ftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~-~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d~~  165 (518)
                      |+||++|.+.+|+||||||+|+||++|||+||++ +.++|++|..|..|||||||+|+|+...++++++.+.+..++.++
T Consensus        79 ~~kl~~~~l~~~drvlylD~D~~v~~~i~~Lf~~~~~~~a~~d~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
T cd02537          79 YTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAPDCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGG  158 (240)
T ss_pred             hHHHHhccccccceEEEEeCCeeEccCHHHHhCCCCceeeecccCccccccceEEEEcCCHHHHHHHHHHHhccCCCCCC
Confidence            9999999999999999999999999999999999 578999998888899999999999999999999999887778899


Q ss_pred             ccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCccccccccccccc---ccCCCceEEcccCCCCCCCcc
Q psy7288         166 TRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSS---VSGGGLQIAHPRAHSSPASLQ  242 (518)
Q Consensus       166 DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y~---~~~~~~kIiHf~g~~KPW~~~  242 (518)
                      ||++   |      |.+|.+..         .+..|     +.+||++....+.+.   ....+++||||.|..|||+..
T Consensus       159 DQdi---L------N~~~~~~~---------~~~~l-----~~~yN~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~~~  215 (240)
T cd02537         159 DQGL---L------NSYFSDRG---------IWKRL-----PFTYNALKPLRYLHPEALWFGDEIKVVHFIGGDKPWSWW  215 (240)
T ss_pred             CHHH---H------HHHHcCCC---------CEeEC-----CcceeeehhhhccCchhhcccCCcEEEEEeCCCCCCCCC
Confidence            9999   9      99998741         11567     999999875543322   235689999999999999986


Q ss_pred             ccchhhhhhhhhHHHhhhhhhhc
Q psy7288         243 QTYASAQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       243 ~~~~~~~~~~~~~~~~~WWdi~~  265 (518)
                      .............+++.||++|.
T Consensus       216 ~~~~~~~~~~~~~~~~~w~~~~~  238 (240)
T cd02537         216 RDPETKEKDDYNELHQWWWDIYD  238 (240)
T ss_pred             cCCCcccccchHHHHHHHHHHHh
Confidence            65433222234678999999994

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.

>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family

Probab=100.00  E-value=1.5e-36  Score=306.39  Aligned_cols=210  Identities=23%  Similarity=0.277  Sum_probs=163.1

Q ss_pred             EEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHH-------HhcCCeEEEEeeeCCCchhhhcccC
Q psy7288           7 TAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNEL-------LKVFNFVKEVDVFDSRDETNLRLLS   79 (518)
Q Consensus         7 ~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L-------~~~~~~v~~V~~l~~~d~~~l~~~~   79 (518)
                      +|||||+||+.|++||+||++||+++++++++|||++++++......+       ...+..++.|+.+..+.       .
T Consensus         1 fAYvtl~Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~-------~   73 (278)
T cd06914           1 YAYVNYATNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG-------G   73 (278)
T ss_pred             CeEEEEecChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC-------C
Confidence            699999999999999999999999999999999999999886543322       23345555555433321       3


Q ss_pred             CCchhhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCC-C-cccccCCCCCCCCCceEEEEeCChHHHHHHHHHHH
Q psy7288          80 RPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE-E-LSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFAL  157 (518)
Q Consensus        80 rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~-e-laAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~  157 (518)
                      ++++..+|+||++|+|++|+||||||||+||++||||||+++ . ..|+|+.+|  |||||||||+|+.++|++|++++.
T Consensus        74 ~~~~~~~~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~~~--~FNSGvmvi~ps~~~~~~l~~~~~  151 (278)
T cd06914          74 DAYWAKSLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRAYW--KFASHLMVIKPSKEAFKELMTEIL  151 (278)
T ss_pred             CccHHHHHHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeecCcc--eecceeEEEeCCHHHHHHHHHHHH
Confidence            456778899999999999999999999999999999999997 2 346788777  999999999999999999999998


Q ss_pred             hcCCC--CcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCc-cccccccccc-------------cc
Q psy7288         158 VNGSF--DDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSA-FGTSTITSTS-------------SS  221 (518)
Q Consensus       158 ~~~s~--d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~-YN~~~~~~y~-------------y~  221 (518)
                      +..+.  .++|||+   |      |.+|.++... ..+   .+..|     |.+ ||+.......             +.
T Consensus       152 ~~~~~~~~~~DQdi---L------N~~~~~~~~~-~~~---~~~~L-----p~~~y~llt~~~r~~~~~~~l~~~~~~~~  213 (278)
T cd06914         152 PAYLNKKNEYDMDL---I------NEEFYNSKQL-FKP---SVLVL-----PHRQYGLLTGEFREKLHKSFLSNAQHLYE  213 (278)
T ss_pred             HhcccCCCCCChHH---H------HHHHhCCccc-cCc---ceEEc-----CccccccCChhhcccCHHHhhcccccccc
Confidence            76543  5789999   9      9999997211 000   11445     775 8877653211             11


Q ss_pred             cc-----CCCceEEcccCC--CCCCCccc
Q psy7288         222 VS-----GGGLQIAHPRAH--SSPASLQQ  243 (518)
Q Consensus       222 ~~-----~~~~kIiHf~g~--~KPW~~~~  243 (518)
                      .+     ..++|+|||+..  .|||....
T Consensus       214 ~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~  242 (278)
T cd06914         214 KWDPDDVFKESKVIHFSDSPLPKPWNYNN  242 (278)
T ss_pred             ccCHHHHHhhCeEEEecCCCCCCCcCCcC
Confidence            22     267999999975  69999854

N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.

>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis

Probab=99.97  E-value=1.8e-31  Score=264.87  Aligned_cols=209  Identities=31%  Similarity=0.412  Sum_probs=155.6

Q ss_pred             EEEEEecChhhHHHHHHHHHHHHhhCCC-CeEEEEECCCCCHHHHHHHHhcC----CeEEEEeeeCCCchhhhcccCCCc
Q psy7288           8 AWVTLATNDSYALGALVVANSLKRVNTV-HDLAILITPGVTLAMKNELLKVF----NFVKEVDVFDSRDETNLRLLSRPD   82 (518)
Q Consensus         8 A~VTl~tnd~Yl~ga~VL~~SLr~~~s~-~~lvvLvt~~vs~~~r~~L~~~~----~~v~~V~~l~~~d~~~l~~~~rp~   82 (518)
                      ++|++++|++|+.++.|+++||+++++. +.++| ++.+++++.++.|+.+.    ..+..+. ++...........+..
T Consensus         2 ~i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~i-l~~~is~~~~~~L~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~   79 (246)
T cd00505           2 AIVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHV-LTNPLSDTFKAALDNLRKLYNFNYELIP-VDILDSVDSEHLKRPI   79 (246)
T ss_pred             eEEEEecCcchhHHHHHHHHHHHHhCCCCeEEEE-EEccccHHHHHHHHHHHhccCceEEEEe-ccccCcchhhhhcCcc
Confidence            7899999999999999999999999875 34444 45689999999998753    2222222 2222211111111233


Q ss_pred             hhhhhHhHhhhhccC-cCeEEEecCCeEEcCCChhhhCCC----CcccccCCCC----------------CCCCCceEEE
Q psy7288          83 LGITFTKIHAWRLTQ-YSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAGW----------------PDCFNSGVFV  141 (518)
Q Consensus        83 ~~~tftKL~~w~L~e-ydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~gw----------------p~~FNSGVmV  141 (518)
                      ...+|+||+++.|.+ |+||||||+|+||++||++||+++    .++|++|.+.                ..||||||||
T Consensus        80 ~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~~yfNsGVml  159 (246)
T cd00505          80 KIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRREGKYYRQKRSHLAGPDYFNSGVFV  159 (246)
T ss_pred             ccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhccchhhcccCCCCCCCceeeeeEE
Confidence            467999999999876 999999999999999999999986    4677776431                2599999999


Q ss_pred             EeCChHHHHHHHHHHHh-----cCCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccc
Q psy7288         142 FKPSESTYNALVEFALV-----NGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTIT  216 (518)
Q Consensus       142 i~Ps~~~~~~Ll~~~~~-----~~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~  216 (518)
                      |+++.++++++++.+.+     ..++.++|||+   |      |.+|.+...        .+..|     |.+||++...
T Consensus       160 inl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---L------N~~~~~~~~--------~i~~L-----~~~wN~~~~~  217 (246)
T cd00505         160 VNLSKERRNQLLKVALEKWLQSLSSLSGGDQDL---L------NTFFKQVPF--------IVKSL-----PCIWNVRLTG  217 (246)
T ss_pred             EechHHHHHHHHHHHHHHHHhhcccCccCCcHH---H------HHHHhcCCC--------eEEEC-----CCeeeEEecC
Confidence            99999998887765433     23577899999   9      999987510        11677     9999998765


Q ss_pred             cccc----cccCCCceEEcccCCCCCCC
Q psy7288         217 STSS----SVSGGGLQIAHPRAHSSPAS  240 (518)
Q Consensus       217 ~y~y----~~~~~~~kIiHf~g~~KPW~  240 (518)
                      .+.+    .....+++||||.|+.|||+
T Consensus       218 ~~~~~~~~~~~~~~~~iiHy~g~~KPW~  245 (246)
T cd00505         218 CYRSLNCFKAFVKNAKVIHFNGPTKPWN  245 (246)
T ss_pred             ccccccchhhhcCCCEEEEeCCCCCCCC
Confidence            4332    22467899999999999996

Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.

>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=99.96  E-value=2.6e-30  Score=251.58  Aligned_cols=208  Identities=25%  Similarity=0.301  Sum_probs=149.7

Q ss_pred             EEEecChhhHHHHHHHHHHHHhhCCC-CeE-EEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhh-----h-cccCCC
Q psy7288          10 VTLATNDSYALGALVVANSLKRVNTV-HDL-AILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETN-----L-RLLSRP   81 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SLr~~~s~-~~l-vvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~-----l-~~~~rp   81 (518)
                      |++++|++|+.+++|+++||++++++ ..+ +++++++++++.++.|++.+..+..+..+...+...     . ....+.
T Consensus         2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (250)
T PF01501_consen    2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH   81 (250)
T ss_dssp             EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred             EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence            67899999999999999999999885 444 455678999999999998877654443332222211     1 112223


Q ss_pred             chhhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccC------------------CCCCCCCCce
Q psy7288          82 DLGITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPD------------------AGWPDCFNSG  138 (518)
Q Consensus        82 ~~~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD------------------~gwp~~FNSG  138 (518)
                      ....+|.||++|++ .+|+||||||+|+||++||++||+++    .++|+.|                  .+...|||||
T Consensus        82 ~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~fNsG  161 (250)
T PF01501_consen   82 FSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPFSERKQPGNKPYFNSG  161 (250)
T ss_dssp             GGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSSEEECESTTTTSEEEE
T ss_pred             ccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccchhhcccCcccccccCc
Confidence            34689999999998 99999999999999999999999964    2445544                  1235899999


Q ss_pred             EEEEeCChHHHHHHHHHHHh----c-CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCccccc
Q psy7288         139 VFVFKPSESTYNALVEFALV----N-GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTS  213 (518)
Q Consensus       139 VmVi~Ps~~~~~~Ll~~~~~----~-~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~  213 (518)
                      ||||+++.++++++.+.+.+    . ..+.++||++   |      |.+|.+..           ..|     |..||+.
T Consensus       162 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~---l------n~~~~~~~-----------~~L-----~~~~N~~  216 (250)
T PF01501_consen  162 VMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDI---L------NIVFYGNI-----------KPL-----PCRYNCQ  216 (250)
T ss_dssp             EEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHH---H------HHHHTTGE-----------EEE-----EGGGSEE
T ss_pred             EEEEeechhhhhhhhhhhhhhhhhcccccCcCchHH---H------hhhcccee-----------EEE-----Cchhccc
Confidence            99999999998888776643    2 2467899999   9      99998643           678     9999998


Q ss_pred             cccc-ccc---cccCCCceEEcccCCCCCCCcc
Q psy7288         214 TITS-TSS---SVSGGGLQIAHPRAHSSPASLQ  242 (518)
Q Consensus       214 ~~~~-y~y---~~~~~~~kIiHf~g~~KPW~~~  242 (518)
                      .... +..   .....+++||||+|..|||...
T Consensus       217 ~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~  249 (250)
T PF01501_consen  217 PSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST  249 (250)
T ss_dssp             HHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred             cccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence            7544 111   3346899999999999999863

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....

>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface

Probab=99.96  E-value=1.6e-29  Score=250.32  Aligned_cols=204  Identities=20%  Similarity=0.221  Sum_probs=151.9

Q ss_pred             EEEecChhhHHHHHHHHHHHHhhCCC--CeEEEEECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCch
Q psy7288          10 VTLATNDSYALGALVVANSLKRVNTV--HDLAILITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDL   83 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SLr~~~s~--~~lvvLvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~   83 (518)
                      |.+++|++|+.+++|+++||+++++.  ++++|+ +.+++++.++.|++.    +..++.+. ++..+........+...
T Consensus         3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il-~~~is~~~~~~L~~~~~~~~~~i~~~~-i~~~~~~~~~~~~~~~~   80 (248)
T cd04194           3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYIL-NDDISEENKKKLKELLKKYNSSIEFIK-IDNDDFKFFPATTDHIS   80 (248)
T ss_pred             EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEE-eCCCCHHHHHHHHHHHHhcCCeEEEEE-cCHHHHhcCCccccccc
Confidence            45788999999999999999999884  455555 468999999999887    33443332 33322222110112233


Q ss_pred             hhhhHhHhhhhccC-cCeEEEecCCeEEcCCChhhhCCC----CcccccCCCC---------------CCCCCceEEEEe
Q psy7288          84 GITFTKIHAWRLTQ-YSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAGW---------------PDCFNSGVFVFK  143 (518)
Q Consensus        84 ~~tftKL~~w~L~e-ydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~gw---------------p~~FNSGVmVi~  143 (518)
                      ..+|.||+++.+.. |+||||||+|+||++||++||+++    .++|++|.++               ..||||||||++
T Consensus        81 ~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv~l~n  160 (248)
T cd04194          81 YATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVLLIN  160 (248)
T ss_pred             HHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecchhee
Confidence            57899999999875 999999999999999999999985    3667777542               269999999999


Q ss_pred             CChHHHHHH----HHHHHhcC-CCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccc
Q psy7288         144 PSESTYNAL----VEFALVNG-SFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITST  218 (518)
Q Consensus       144 Ps~~~~~~L----l~~~~~~~-s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y  218 (518)
                      ++.++.+++    ++++.+.. .+.++||++   |      |.+|.+..           ..|     |.+||++.....
T Consensus       161 l~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---L------N~~~~~~~-----------~~L-----~~~~N~~~~~~~  215 (248)
T cd04194         161 LKKWREENITEKLLELIKEYGGRLIYPDQDI---L------NAVLKDKI-----------LYL-----PPRYNFQTGFYY  215 (248)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCCceeeCChHH---H------HHHHhCCe-----------EEc-----CcccccchhHhH
Confidence            998775544    44555443 467899999   9      99998742           678     999999876432


Q ss_pred             cc----------cccCCCceEEcccCCCCCCC
Q psy7288         219 SS----------SVSGGGLQIAHPRAHSSPAS  240 (518)
Q Consensus       219 ~y----------~~~~~~~kIiHf~g~~KPW~  240 (518)
                      .+          .....+++||||+|..|||+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~  247 (248)
T cd04194         216 LLKKKSKEEQELEEARKNPVIIHYTGSDKPWN  247 (248)
T ss_pred             HhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence            22          12367899999999999997

The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys

>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional

Probab=99.95  E-value=1.1e-27  Score=248.75  Aligned_cols=219  Identities=14%  Similarity=0.134  Sum_probs=157.4

Q ss_pred             EEEecChhhHHHHHHHHHHHHhhCCCCe--EEEEECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCch
Q psy7288          10 VTLATNDSYALGALVVANSLKRVNTVHD--LAILITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDL   83 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SLr~~~s~~~--lvvLvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~   83 (518)
                      |.+++|++|+.++.|++.||..|+++..  ++|+ +++++++.++.|+.+    +..+. +..++......+... .-.-
T Consensus        28 Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il-~~~is~e~~~~l~~l~~~~~~~i~-~~~id~~~~~~~~~~-~~~s  104 (334)
T PRK15171         28 IAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVF-TDYISDADKQRFSALAKQYNTRIN-IYLINCERLKSLPST-KNWT  104 (334)
T ss_pred             EEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEE-eCCCCHHHHHHHHHHHHhcCCeEE-EEEeCHHHHhCCccc-CcCC
Confidence            5567899999999999999999887654  4444 569999998877654    33333 333333222222111 1123


Q ss_pred             hhhhHhHhhhhcc--CcCeEEEecCCeEEcCCChhhhCCC----Cccccc-CC------------CCC----CCCCceEE
Q psy7288          84 GITFTKIHAWRLT--QYSKCVFLDADVLIVQNCDELFDRE----ELSAAP-DA------------GWP----DCFNSGVF  140 (518)
Q Consensus        84 ~~tftKL~~w~L~--eydKVVYLDaD~LVl~nIDeLF~~~----elaAap-D~------------gwp----~~FNSGVm  140 (518)
                      ..+|.||.+.++.  +++||||||+|+||++||++||+++    .++|+. |.            +++    .|||||||
T Consensus       105 ~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~~~~~~~~l~~~~~~~~YFNsGVl  184 (334)
T PRK15171        105 YATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEWWSKRAQSLQTPGLASGYFNSGFL  184 (334)
T ss_pred             HHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhHHHHHHHhcCCccccccceecceE
Confidence            5799999999975  6999999999999999999999985    366653 22            112    49999999


Q ss_pred             EEeCChHHHHHHHHH----HHhc---CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCccccc
Q psy7288         141 VFKPSESTYNALVEF----ALVN---GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTS  213 (518)
Q Consensus       141 Vi~Ps~~~~~~Ll~~----~~~~---~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~  213 (518)
                      |||...++.+++.+.    +...   +.+.++|||+   |      |.+|.+..           ..|     +.+||++
T Consensus       185 liNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDi---L------N~~~~~~~-----------~~L-----~~~wN~~  239 (334)
T PRK15171        185 LINIPAWAQENISAKAIEMLADPEIVSRITHLDQDV---L------NILLAGKV-----------KFI-----DAKYNTQ  239 (334)
T ss_pred             EEcHHHHHHhhHHHHHHHHHhccccccceeecChhH---H------HHHHcCCe-----------EEC-----CHhhCCc
Confidence            999998876665544    4332   3567899999   9      99998743           678     9999987


Q ss_pred             ccccccc-----cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhhc
Q psy7288         214 TITSTSS-----SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       214 ~~~~y~y-----~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~  265 (518)
                      ....+..     .....+++||||+|+.|||+....         ....+.||.++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~---------~~~~~~f~~~~~  287 (334)
T PRK15171        240 FSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWAD---------YPVSQYFLKAKE  287 (334)
T ss_pred             cchhHHHHhcccccccCCCEEEEECCCCCCCCCCCC---------CchHHHHHHHHh
Confidence            6443322     112457899999999999986543         245688899884

>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function

Probab=99.93  E-value=9.3e-26  Score=226.37  Aligned_cols=212  Identities=17%  Similarity=0.142  Sum_probs=143.3

Q ss_pred             EEecChhhHHHHHHHHHHHHhhCCC-CeEEE-EECCCCCHHHHHHHHhcC---CeEEEEeeeCCCchhhhcc--------
Q psy7288          11 TLATNDSYALGALVVANSLKRVNTV-HDLAI-LITPGVTLAMKNELLKVF---NFVKEVDVFDSRDETNLRL--------   77 (518)
Q Consensus        11 Tl~tnd~Yl~ga~VL~~SLr~~~s~-~~lvv-Lvt~~vs~~~r~~L~~~~---~~v~~V~~l~~~d~~~l~~--------   77 (518)
                      .+++| +|+. ++|.+.|+..++++ .++++ +++++++.+..+.+....   ...+.+..++.........        
T Consensus         4 v~~~D-n~l~-~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~~   81 (257)
T cd06429           4 VIFSD-NRLA-AAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQLE   81 (257)
T ss_pred             EEEec-chhH-HHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhhh
Confidence            44566 9995 55555566666654 66554 457889987776665543   2222333333211111100        


Q ss_pred             ---------cCCCch--hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccCCCCCCCCCceEEE
Q psy7288          78 ---------LSRPDL--GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAGWPDCFNSGVFV  141 (518)
Q Consensus        78 ---------~~rp~~--~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~gwp~~FNSGVmV  141 (518)
                               ..++..  ..+|.||.+.++ .+++||||||||+||.+||++||+++    .++|++|     ||||||||
T Consensus        82 ~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d-----yfNsGV~l  156 (257)
T cd06429          82 SEADTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET-----SWNPGVNV  156 (257)
T ss_pred             ccccccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-----hcccceEE
Confidence                     012222  478999999996 47899999999999999999999986    2455555     89999999


Q ss_pred             EeCChHHHHHHH----HHHHhcC-----CCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccc
Q psy7288         142 FKPSESTYNALV----EFALVNG-----SFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGT  212 (518)
Q Consensus       142 i~Ps~~~~~~Ll----~~~~~~~-----s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~  212 (518)
                      |++..++.+++.    +.+....     .++++||++   |      |..|.+..           +.|     +.+||+
T Consensus       157 inl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~---l------n~~~~~~~-----------~~L-----~~~wN~  211 (257)
T cd06429         157 VNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPP---G------LIVFYGLT-----------SPL-----DPSWHV  211 (257)
T ss_pred             EeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccH---H------HHHccCee-----------EEC-----ChHHcc
Confidence            999988866553    3333321     256789999   9      99998753           577     899998


Q ss_pred             cccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         213 STITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       213 ~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                      .. ..+.+   .....+++||||.|..|||+....         ..+.+.||.++
T Consensus       212 ~~-l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~---------~~~~~~w~~yl  256 (257)
T cd06429         212 RG-LGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAI---------PSYKELWEKYL  256 (257)
T ss_pred             cC-CcccccccccccCCcEEEEECCCCCCcCCCCC---------ChHHHHHHHHh
Confidence            73 22322   234568999999999999997642         35788899875

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.

>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=7.1e-25  Score=225.74  Aligned_cols=207  Identities=19%  Similarity=0.220  Sum_probs=158.0

Q ss_pred             EEEecChhhHHHHHHHHHHHHhhCC--CCeEEEEECCCCCHHHHHHHHhc---CCeEEEEeeeCCCchhhhcccCCCch-
Q psy7288          10 VTLATNDSYALGALVVANSLKRVNT--VHDLAILITPGVTLAMKNELLKV---FNFVKEVDVFDSRDETNLRLLSRPDL-   83 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SLr~~~s--~~~lvvLvt~~vs~~~r~~L~~~---~~~v~~V~~l~~~d~~~l~~~~rp~~-   83 (518)
                      |.+++|.+|+.||.|.++||..|+.  .+.++|++. +++++..+.|++.   +..-+.+..++......... ...++ 
T Consensus         5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~-~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~~~~-~~~~~s   82 (325)
T COG1442           5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVD-GLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLDYPP-FTKRFS   82 (325)
T ss_pred             EEEEcccccchhHHHHHHHHHHhCccccEEEEEEec-CCCHHHHHHHHHHHHhhccceeeEEEechhhhcccc-cccchH
Confidence            4568899999999999999999998  677887764 9999998888763   22222333444332222220 12233 


Q ss_pred             hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccCCC----------------CCCCCCceEEEE
Q psy7288          84 GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAG----------------WPDCFNSGVFVF  142 (518)
Q Consensus        84 ~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~g----------------wp~~FNSGVmVi  142 (518)
                      ..+|.|+++.++ .+|+|+||||+|+||+++|++||+++    .++||.|.+                ...|||+|||++
T Consensus        83 ~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~lli  162 (325)
T COG1442          83 KMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGVLLI  162 (325)
T ss_pred             HHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCccceeee
Confidence            479999999997 57899999999999999999999986    367777742                237899999999


Q ss_pred             eCChHHHHHHHHHHHh-----cCCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCccccccccc
Q psy7288         143 KPSESTYNALVEFALV-----NGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITS  217 (518)
Q Consensus       143 ~Ps~~~~~~Ll~~~~~-----~~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~  217 (518)
                      |...|+.+++.+.+.+     ...+..+|||+   |      |.+|.+..           ..|     +.+||++....
T Consensus       163 nl~~W~~~~i~~k~i~~~~~~~~~~~~~DQdi---L------N~i~~~~~-----------~~L-----~~~YN~~~~~~  217 (325)
T COG1442         163 NLKLWREENIFEKLIELLKDKENDLLYPDQDI---L------NMIFEDRV-----------LEL-----PIRYNAIPYID  217 (325)
T ss_pred             hHHHHHHhhhHHHHHHHHhccccccCCccccH---H------HHHHHhhh-----------hcc-----Ccccceeehhh
Confidence            9999887777665543     23677899999   9      99998853           567     99999997654


Q ss_pred             ccc-----cccCCCceEEcccCCCCCCCccc
Q psy7288         218 TSS-----SVSGGGLQIAHPRAHSSPASLQQ  243 (518)
Q Consensus       218 y~y-----~~~~~~~kIiHf~g~~KPW~~~~  243 (518)
                      +..     ..++.++.|+||+|+.|||+...
T Consensus       218 ~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~  248 (325)
T COG1442         218 SQLKDKYIYPFGDDPVILHYAGPTKPWHSDS  248 (325)
T ss_pred             hccchhhhccCCCCceEEEecCCCCCCcCcc
Confidence            321     34678899999999999999875

>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis

Probab=99.91  E-value=6.5e-24  Score=215.54  Aligned_cols=222  Identities=13%  Similarity=0.135  Sum_probs=146.4

Q ss_pred             EEEEEEecChhhHHHHHHHHHHHHhhCCC-CeEEEEECCCCCHHHHHHHHhc----CCeEEEEeeeCCCch-hhhcccCC
Q psy7288           7 TAWVTLATNDSYALGALVVANSLKRVNTV-HDLAILITPGVTLAMKNELLKV----FNFVKEVDVFDSRDE-TNLRLLSR   80 (518)
Q Consensus         7 ~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~-~~lvvLvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~-~~l~~~~r   80 (518)
                      .|+|+. . .+|+.++.|++.||..|+.. +.++| ++++++++.++.|.+.    ++.+..+.   ..+. ..+.....
T Consensus         3 ~~iv~~-~-~~y~~~~~~~i~Sil~n~~~~~~fhi-i~d~~s~~~~~~l~~~~~~~~~~i~f~~---i~~~~~~~~~~~~   76 (280)
T cd06431           3 VAIVCA-G-YNASRDVVTLVKSVLFYRRNPLHFHL-ITDEIARRILATLFQTWMVPAVEVSFYN---AEELKSRVSWIPN   76 (280)
T ss_pred             EEEEEc-c-CCcHHHHHHHHHHHHHcCCCCEEEEE-EECCcCHHHHHHHHHhccccCcEEEEEE---hHHhhhhhccCcc
Confidence            355543 3 99999999999999998632 34444 4568999988888654    33433332   2111 11111111


Q ss_pred             Cchh-h-hhHhHhhhhcc--CcCeEEEecCCeEEcCCChhhhCC-----C-Cccc-ccCC-------------CCC---C
Q psy7288          81 PDLG-I-TFTKIHAWRLT--QYSKCVFLDADVLIVQNCDELFDR-----E-ELSA-APDA-------------GWP---D  133 (518)
Q Consensus        81 p~~~-~-tftKL~~w~L~--eydKVVYLDaD~LVl~nIDeLF~~-----~-elaA-apD~-------------gwp---~  133 (518)
                      ..+. . +|.||.+.++.  +++||||||+|+||++||++||++     + .++| +.|.             .|+   .
T Consensus        77 ~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~  156 (280)
T cd06431          77 KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWKNHRPWPALGR  156 (280)
T ss_pred             cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhhccCCCccccc
Confidence            1222 2 56899999975  499999999999999999999986     1 2333 3332             112   4


Q ss_pred             CCCceEEEEeCChHHHHHHHHHHH----h----cCCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCC
Q psy7288         134 CFNSGVFVFKPSESTYNALVEFAL----V----NGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENS  205 (518)
Q Consensus       134 ~FNSGVmVi~Ps~~~~~~Ll~~~~----~----~~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s  205 (518)
                      |||||||+|+...++.+++.+.+.    +    .+.+.++|||+   |      |.+|.+..  .+      +..|    
T Consensus       157 yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDi---L------N~v~~~~~--~~------~~~L----  215 (280)
T cd06431         157 GFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDI---F------NAVIKQNP--FL------VYQL----  215 (280)
T ss_pred             ceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHH---H------HHHHcCCc--ce------eEEC----
Confidence            999999999999888666655442    2    24567899999   9      99997631  00      1567    


Q ss_pred             CCCcccccccccccc-c--ccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         206 ADSAFGTSTITSTSS-S--VSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       206 ~p~~YN~~~~~~y~y-~--~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                       |.+||++....... .  ....++.||||+|+.|||......        ..++..|-.+.
T Consensus       216 -~~~wN~~~~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~--------~~~~~~~~~~~  268 (280)
T cd06431         216 -PCAWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHV--------EFFRNLYLTFL  268 (280)
T ss_pred             -CCccccccCccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCC--------hHHHHHHHHHH
Confidence             99999886422111 1  124689999999999999865321        35566666655

The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil

>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family

Probab=99.80  E-value=4.2e-19  Score=177.54  Aligned_cols=194  Identities=13%  Similarity=0.045  Sum_probs=133.5

Q ss_pred             EEecChhhHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHhc----CCeEEEEeeeCCCch-hhhcccCCCchh
Q psy7288          11 TLATNDSYALGALVVANSLKRVNT-VHDLAILITPGVTLAMKNELLKV----FNFVKEVDVFDSRDE-TNLRLLSRPDLG   84 (518)
Q Consensus        11 Tl~tnd~Yl~ga~VL~~SLr~~~s-~~~lvvLvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~-~~l~~~~rp~~~   84 (518)
                      ++++++.|+.++.|++.||..|+. .+.++|+. .+++++.++.|.+.    +..+..+.+ +.... ......  .+..
T Consensus         5 ~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~-~~is~e~~~~l~~~~~~~~~~i~~i~i-~~~~~~~~~~~~--~~~~   80 (248)
T cd06432           5 SVASGHLYERFLRIMMLSVMKNTKSPVKFWFIK-NFLSPQFKEFLPEMAKEYGFEYELVTY-KWPRWLHKQTEK--QRII   80 (248)
T ss_pred             EEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEe-CCCCHHHHHHHHHHHHHhCCceEEEEe-cChhhhhccccc--chhH
Confidence            348899999999999999999863 35556555 68999998888763    444443332 31111 111000  0112


Q ss_pred             hhhHhHhhhhc-c-CcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC---------------C------CCCCCc
Q psy7288          85 ITFTKIHAWRL-T-QYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG---------------W------PDCFNS  137 (518)
Q Consensus        85 ~tftKL~~w~L-~-eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g---------------w------p~~FNS  137 (518)
                      .+|.+|.+-.+ . +++||||||+|+||+++|++||+++   . ++|++|.+               |      ..||||
T Consensus        81 ~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNS  160 (248)
T cd06432          81 WGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHIS  160 (248)
T ss_pred             HHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCccce
Confidence            35677777654 3 5999999999999999999999986   2 44554421               1      139999


Q ss_pred             eEEEEeCChHHHHHHHHHHH-------hc-CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCc
Q psy7288         138 GVFVFKPSESTYNALVEFAL-------VN-GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSA  209 (518)
Q Consensus       138 GVmVi~Ps~~~~~~Ll~~~~-------~~-~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~  209 (518)
                      |||+||...++.+++.+.+.       ++ .++.+.|||+   |      |..+.+..          +..|     |.+
T Consensus       161 GVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDi---L------N~v~~~~~----------i~~L-----p~~  216 (248)
T cd06432         161 ALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDL---P------NNMQHQVP----------IFSL-----PQE  216 (248)
T ss_pred             eeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchh---h------HHHhccCC----------eEEC-----ChH
Confidence            99999999988777655332       22 3577899999   9      99997631          1577     999


Q ss_pred             ccccccccccccccCCCceEEcccC
Q psy7288         210 FGTSTITSTSSSVSGGGLQIAHPRA  234 (518)
Q Consensus       210 YN~~~~~~y~y~~~~~~~kIiHf~g  234 (518)
                      ||....  ++-+...+.+++|||..
T Consensus       217 w~~~~~--~~~~~~~~~~~~~~~~~  239 (248)
T cd06432         217 WLWCET--WCSDESKKKAKTIDLCN  239 (248)
T ss_pred             HHHHHH--HhcccccCccceeeccc
Confidence            987643  22234478899999975

C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.

>PLN02523 galacturonosyltransferase

Probab=99.79  E-value=1e-18  Score=187.77  Aligned_cols=212  Identities=16%  Similarity=0.150  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHhh-CCCCeEEE-EECCCCCHHHHHHHHhcC---CeEEEEeeeCC-C--c---hhh---hc--------
Q psy7288          19 ALGALVVANSLKRV-NTVHDLAI-LITPGVTLAMKNELLKVF---NFVKEVDVFDS-R--D---ETN---LR--------   76 (518)
Q Consensus        19 l~ga~VL~~SLr~~-~s~~~lvv-Lvt~~vs~~~r~~L~~~~---~~v~~V~~l~~-~--d---~~~---l~--------   76 (518)
                      +.+|.|++.|+..| +...++|+ ++|++++......+-...   ...++|..|+. .  .   ..-   +.        
T Consensus       258 vlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ln~~~~pvlk~l~s~~~~~~~  337 (559)
T PLN02523        258 VIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKFLNSSYVPVLRQLESANLQKFY  337 (559)
T ss_pred             chhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhhcccccchHHHhhhhhhhhhhh
Confidence            89999999999988 44555554 567888865554443322   22233333321 0  0   000   00        


Q ss_pred             ---------------ccCCCch--hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC----
Q psy7288          77 ---------------LLSRPDL--GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG----  130 (518)
Q Consensus        77 ---------------~~~rp~~--~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g----  130 (518)
                                     .+..+++  ..+|.||++.++ .+++||||||+|+||.+||++||+++   . ++|+.|..    
T Consensus       338 f~~~~~~~~~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~  417 (559)
T PLN02523        338 FENKLENATKDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFH  417 (559)
T ss_pred             ccccccccccccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHH
Confidence                           0111233  357899999996 56999999999999999999999986   2 44555531    


Q ss_pred             -------C--C---CCCCc-------eEEEEeCChHHHHHHHHHHH---h-cCCCCcCccccccccccCCCCC---cccC
Q psy7288         131 -------W--P---DCFNS-------GVFVFKPSESTYNALVEFAL---V-NGSFDDATRQLQKPLNMRNLPK---SFFQ  184 (518)
Q Consensus       131 -------w--p---~~FNS-------GVmVi~Ps~~~~~~Ll~~~~---~-~~s~d~~DQdl~~pL~mr~lpN---~~F~  184 (518)
                             +  |   .|||+       |||||+...|+.+++.+.+.   + +......|||.   |      |   ..|.
T Consensus       418 r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~Dqda---L------pp~LivF~  488 (559)
T PLN02523        418 RYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLWKLGT---L------PPGLITFY  488 (559)
T ss_pred             HHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccccccccc---c------chHHHHhc
Confidence                   1  1   36776       99999999999887766553   1 23455789999   7      5   6777


Q ss_pred             CCCCCCCCCCCCccccCCCCCCCCcccccccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhh
Q psy7288         185 PPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSY  261 (518)
Q Consensus       185 ~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WW  261 (518)
                      +..           +.|     +.+||..... |.+   ....+++.||||.|..|||.....         ..+.+.||
T Consensus       489 gri-----------~~L-----D~rWNvlglG-y~~~i~~~~i~~paIIHYnG~~KPWle~~i---------~~yr~~W~  542 (559)
T PLN02523        489 STT-----------KPL-----DKSWHVLGLG-YNPSISMDEIRNAAVIHFNGNMKPWLDIAM---------NQFKPLWT  542 (559)
T ss_pred             Cce-----------Eec-----CchhhccCCc-cCCCccccccCCCEEEEECCCCCccccCCC---------CcchHHHH
Confidence            643           567     7788865432 211   233578999999999999976432         35678888


Q ss_pred             hhhc
Q psy7288         262 DITT  265 (518)
Q Consensus       262 di~~  265 (518)
                      .+..
T Consensus       543 kYl~  546 (559)
T PLN02523        543 KYVD  546 (559)
T ss_pred             HHHc
Confidence            8763

>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function

Probab=99.79  E-value=8.8e-19  Score=178.99  Aligned_cols=199  Identities=15%  Similarity=0.188  Sum_probs=132.0

Q ss_pred             ecChhhHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHhc---CCeEE--EEeeeCCCchh--hhcccCCCchh
Q psy7288          13 ATNDSYALGALVVANSLKRVNT-VHDLAILITPGVTLAMKNELLKV---FNFVK--EVDVFDSRDET--NLRLLSRPDLG   84 (518)
Q Consensus        13 ~tnd~Yl~ga~VL~~SLr~~~s-~~~lvvLvt~~vs~~~r~~L~~~---~~~v~--~V~~l~~~d~~--~l~~~~rp~~~   84 (518)
                      ++++. +..++++++|+..++. ...++|+....++++.++.|+++   +...+  .+..+..+...  ....+..   .
T Consensus         7 ~~g~~-~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~~---~   82 (304)
T cd06430           7 ACGER-LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLFK---P   82 (304)
T ss_pred             EcCCc-HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhccc---H
Confidence            34444 8999999999988763 33455666555888888877765   33333  33333322211  1111100   2


Q ss_pred             hhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCC--C----Ccccc-cCC-----CC-------C----CCCCceEE
Q psy7288          85 ITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDR--E----ELSAA-PDA-----GW-------P----DCFNSGVF  140 (518)
Q Consensus        85 ~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~--~----elaAa-pD~-----gw-------p----~~FNSGVm  140 (518)
                      .+|.||.+.++ .++|||||||+|+||++||+|||++  +    .++|+ ++.     +|       +    .+||||||
T Consensus        83 ~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~~~~gFNSGVm  162 (304)
T cd06430          83 CAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYYGKTGVNSGVM  162 (304)
T ss_pred             HHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCccccccccccee
Confidence            68999999885 5789999999999999999999986  2    24443 432     23       1    35999999


Q ss_pred             EEeCChHHH-----------H----HHHHHHHhc-CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCC
Q psy7288         141 VFKPSESTY-----------N----ALVEFALVN-GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSREN  204 (518)
Q Consensus       141 Vi~Ps~~~~-----------~----~Ll~~~~~~-~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~  204 (518)
                      +||...++.           .    .+++++.+. ..+.++|||+   |      |..|.+...        .+..|   
T Consensus       163 LmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDi---L------N~v~~~~p~--------~~~~L---  222 (304)
T cd06430         163 LMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDL---I------NIIFHHNPE--------MLYVF---  222 (304)
T ss_pred             eeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHH---H------HHHHcCCCC--------eEEEc---
Confidence            999988775           2    345555554 4577999999   9      999987310        12567   


Q ss_pred             CCCCcccccccc-cccc---cccCCCceEEcccCCCC
Q psy7288         205 SADSAFGTSTIT-STSS---SVSGGGLQIAHPRAHSS  237 (518)
Q Consensus       205 s~p~~YN~~~~~-~y~y---~~~~~~~kIiHf~g~~K  237 (518)
                        |.+||++... .|..   .....+++|||..+..+
T Consensus       223 --p~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~  257 (304)
T cd06430         223 --PCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY  257 (304)
T ss_pred             --CccccCCccceeecccccccccccceEEEcCCCCC
Confidence              9999977633 2221   12246899999986555

A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.

>PLN02718 Probable galacturonosyltransferase

Probab=99.79  E-value=5.8e-19  Score=191.64  Aligned_cols=199  Identities=14%  Similarity=0.108  Sum_probs=133.5

Q ss_pred             cChhhHHHHHHHHHHHHhh--CCCCeEEE-EECCCCCHHHHHHHHhcCC---eEEEEeeeCCCchhh--------hccc-
Q psy7288          14 TNDSYALGALVVANSLKRV--NTVHDLAI-LITPGVTLAMKNELLKVFN---FVKEVDVFDSRDETN--------LRLL-   78 (518)
Q Consensus        14 tnd~Yl~ga~VL~~SLr~~--~s~~~lvv-Lvt~~vs~~~r~~L~~~~~---~v~~V~~l~~~d~~~--------l~~~-   78 (518)
                      .+|+|+ ++.|++.|+..|  ++. .+++ +++++++...+..+.....   ..+.|..++  +...        +..+ 
T Consensus       319 ~sDNvl-aasVvInSil~Ns~np~-~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Id--df~~lp~~~~~~lk~l~  394 (603)
T PLN02718        319 FSDNVL-ACSVVVNSTISSSKEPE-KIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNID--DMNVLPADYNSLLMKQN  394 (603)
T ss_pred             EcCCce-eEEEEhhhhhhccCCCC-cEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecc--hhccccccchhhhhhcc
Confidence            345574 899999999987  333 4443 5578999888776654422   122232222  1111        1100 


Q ss_pred             -CCCch--hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC--------------C-----
Q psy7288          79 -SRPDL--GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG--------------W-----  131 (518)
Q Consensus        79 -~rp~~--~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g--------------w-----  131 (518)
                       .++++  ..+|.||++..+ .+++||||||+|+||.+||.+||+++   . ++|+.|.+              +     
T Consensus       395 s~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i  474 (603)
T PLN02718        395 SHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWV  474 (603)
T ss_pred             ccccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhh
Confidence             12222  468999999986 46999999999999999999999986   2 34444421              1     


Q ss_pred             -------CCCCCceEEEEeCChHHHHHHHH----HHHhcCCCCcCccccccccccCCCCC---cccCCCCCCCCCCCCCc
Q psy7288         132 -------PDCFNSGVFVFKPSESTYNALVE----FALVNGSFDDATRQLQKPLNMRNLPK---SFFQPPSTGSRSPSVSS  197 (518)
Q Consensus       132 -------p~~FNSGVmVi~Ps~~~~~~Ll~----~~~~~~s~d~~DQdl~~pL~mr~lpN---~~F~~~~~~di~p~~~~  197 (518)
                             ..|||+|||||++..|+.+++.+    ++..+......|||.   |      |   ..|.+..          
T Consensus       475 ~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dqda---L------pp~LlvF~gri----------  535 (603)
T PLN02718        475 AKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGS---L------PIGWLTFYNQT----------  535 (603)
T ss_pred             hcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCccc---c------cHHHHHhcCce----------
Confidence                   13588999999999998766554    444443335678999   7      6   7787743          


Q ss_pred             cccCCCCCCCCcccccccccccc---cccCCCceEEcccCCCCCCCcc
Q psy7288         198 ISHSRENSADSAFGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQ  242 (518)
Q Consensus       198 i~~Lr~~s~p~~YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~  242 (518)
                       +.|     +.+||....+ |.+   .....++.||||.|+.|||...
T Consensus       536 -~~L-----D~rWNv~gLG-~~~~i~~~~i~~aaIIHYnG~~KPWle~  576 (603)
T PLN02718        536 -VAL-----DKRWHVLGLG-HESGVGASDIEQAAVIHYDGVMKPWLDI  576 (603)
T ss_pred             -eec-----ChHHhccCcc-ccccccccccCCCEEEEECCCCCccccC
Confidence             577     8888876533 222   2235788999999999999875

>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]

Probab=99.74  E-value=1.7e-19  Score=180.42  Aligned_cols=211  Identities=23%  Similarity=0.212  Sum_probs=138.9

Q ss_pred             CCCEEEEEEecChhhHHH-HHHHHHHHHhhCC-CCeE-EEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchh---hhcc
Q psy7288           4 VTGTAWVTLATNDSYALG-ALVVANSLKRVNT-VHDL-AILITPGVTLAMKNELLKVFNFVKEVDVFDSRDET---NLRL   77 (518)
Q Consensus         4 ~~~~A~VTl~tnd~Yl~g-a~VL~~SLr~~~s-~~~l-vvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~---~l~~   77 (518)
                      .+++|+++.+++.+|.+. ..++.+-|+.++. +..+ ++|...++.+-..+.|...+..+..|+.++..+..   +-..
T Consensus        68 ng~~al~n~~t~~d~y~N~Tr~lv~~Lk~~~etkaKlV~vL~mkg~d~wk~d~l~ldga~~~~vq~i~~hevv~~~~di~  147 (368)
T COG5597          68 NGDYALGNRATLRDIYLNRTRALVVVLKTGGETKAKLVEVLTMKGCDLWKTDLLPLDGAFNARVQRINVHEVVPFTKDIK  147 (368)
T ss_pred             cCcccccchhhhhceeecccceehhhhhhcCcchhheeeehhhcccchhhhhccccchHHHHHhccchHhhhhhhhhccC
Confidence            456777777776555554 6777777777654 3345 34555677776666666655555445544432211   1111


Q ss_pred             cCCCchhhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCC--CcccccCCC-------------------------
Q psy7288          78 LSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE--ELSAAPDAG-------------------------  130 (518)
Q Consensus        78 ~~rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~--elaAapD~g-------------------------  130 (518)
                      +...++...|+||++|+++|||||||||+|.||++|||+||+++  +++|++|..                         
T Consensus       148 ~~~~rw~~mftKLrVfeqtEyDRvifLDsDaivlknmDklFd~Pvyef~a~pD~~~sp~~fhrp~~~i~~~ft~~faayg  227 (368)
T COG5597         148 PDFHRWLDMFTKLRVFEQTEYDRVIFLDSDAIVLKNMDKLFDYPVYEFAAAPDVYESPADFHRPNSGIFVSFTPAFAAYG  227 (368)
T ss_pred             cCcCcHHHHhHHHHhhhhhhhceEEEeccchHHhhhhHHHhcchhhhhccCCchhhCHHHhcCCCCccceeecHHHHhhc
Confidence            22345678999999999999999999999999999999999976  565555410                         


Q ss_pred             ---------------------------CCCCCCceEEEEeCChHHHHHHHHHHHhcCCCC---cCccccccccccCCCCC
Q psy7288         131 ---------------------------WPDCFNSGVFVFKPSESTYNALVEFALVNGSFD---DATRQLQKPLNMRNLPK  180 (518)
Q Consensus       131 ---------------------------wp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d---~~DQdl~~pL~mr~lpN  180 (518)
                                                 |..+||+|+||++|+...+.+++.++.- .-||   ...|.+   |      |
T Consensus       228 ~~r~~ly~Pylf~a~~dq~~~hstpP~fk~~FnagLmv~~Psk~hm~riv~~alP-klydda~mmeqsl---l------n  297 (368)
T COG5597         228 KMRAALYAPYLFWARTDQTFLHSTPPDFKLKFNAGLMVGLPSKMHMLRIVWFALP-KLYDDADMMEQSL---L------N  297 (368)
T ss_pred             ccHhhhccccccccccCCcccccCCCcHhhhhccCceeecchHHHHHHHHHHhhH-HhhhhhhHHHHHH---H------H
Confidence                                       1157999999999999999999988732 2233   446899   9      8


Q ss_pred             cccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccccccCCCceEEcccCCCCCCCcccc
Q psy7288         181 SFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQT  244 (518)
Q Consensus       181 ~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y~~~~~~~kIiHf~g~~KPW~~~~~  244 (518)
                      ..|+...            -..|.|+++.||.-...    .....-++.+|    .|||...+.
T Consensus       298 laYn~~g------------~FPwerld~~yNG~wa~----~ndlPylka~H----gK~W~y~g~  341 (368)
T COG5597         298 LAYNYEG------------FFPWERLDPRYNGYWAD----ANDLPYLKAWH----GKPWFYTGE  341 (368)
T ss_pred             HHHhhhc------------cCchhhcCccccccccc----ccccchHHHhh----cCcCCCCcc
Confidence            8876421            11344459999932211    11112345566    499998654

>PLN02769 Probable galacturonosyltransferase

Probab=99.73  E-value=7.7e-18  Score=183.67  Aligned_cols=146  Identities=16%  Similarity=0.072  Sum_probs=105.6

Q ss_pred             hhhHhHhhhhcc-CcCeEEEecCCeEEcCCChhhhCCC----CcccccCCC--------------C---CCCCCceEEEE
Q psy7288          85 ITFTKIHAWRLT-QYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAG--------------W---PDCFNSGVFVF  142 (518)
Q Consensus        85 ~tftKL~~w~L~-eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~g--------------w---p~~FNSGVmVi  142 (518)
                      .+|.||++.++. +++||||||+|+||.+||.+||++|    -++|+.|.+              +   ..|||+|||||
T Consensus       438 ~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~rl~~~~~yl~~~~F~~~~CyFNSGVLLI  517 (629)
T PLN02769        438 FSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLGDTNFDTNSCAWMSGLNVI  517 (629)
T ss_pred             HHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhcccCCCccccccccCeeEe
Confidence            578899998864 5899999999999999999999986    255665421              1   13689999999


Q ss_pred             eCChHHHHHHHHHHH----hc-----CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCccccc
Q psy7288         143 KPSESTYNALVEFAL----VN-----GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTS  213 (518)
Q Consensus       143 ~Ps~~~~~~Ll~~~~----~~-----~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~  213 (518)
                      +...|+.+++.+.+.    ..     ..++.++|+.   |      |..|.+..           +.|     +.+||+.
T Consensus       518 NL~~WRk~nITe~~~~~~~~~~~~~~~~~~~~~Lp~---l------nlvF~g~v-----------~~L-----D~rWNv~  572 (629)
T PLN02769        518 DLDKWRELDVTETYLKLLQKFSKDGEESLRAAALPA---S------LLTFQDLI-----------YPL-----DDRWVLS  572 (629)
T ss_pred             eHHHHHHhCHHHHHHHHHHHhhhcccccccccCcCH---H------HHHhcCeE-----------EEC-----CHHHccc
Confidence            999988765544322    21     1234456666   7      77888753           677     8889876


Q ss_pred             ccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhhc
Q psy7288         214 TITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       214 ~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~  265 (518)
                      ..+ |.|   .....+++||||.|+.|||.....         ..+++.||.++.
T Consensus       573 gLG-~~~~i~~~~i~~paIIHYnG~~KPW~e~~i---------~~yr~~W~kYl~  617 (629)
T PLN02769        573 GLG-HDYGIDEQAIKKAAVLHYNGNMKPWLELGI---------PKYKKYWKRFLN  617 (629)
T ss_pred             ccc-ccccccccccCCcEEEEECCCCCCccCCCC---------ChHHHHHHHHhc
Confidence            422 222   234578999999999999987532         357889999874

>PLN02867 Probable galacturonosyltransferase

Probab=99.68  E-value=5.1e-17  Score=174.85  Aligned_cols=151  Identities=16%  Similarity=0.157  Sum_probs=109.5

Q ss_pred             CCCch--hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccCC--------C--C----------
Q psy7288          79 SRPDL--GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDA--------G--W----------  131 (518)
Q Consensus        79 ~rp~~--~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~--------g--w----------  131 (518)
                      .+|++  ..+|.||++.++ .+++||||||+|+||.+||++||++|    .++|+.|.        +  +          
T Consensus       323 ~~pkylS~lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~  402 (535)
T PLN02867        323 LSPSCLSLLNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPL  402 (535)
T ss_pred             cChhhhhHHHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchh
Confidence            34544  358999999996 47999999999999999999999986    25676542        0  0          


Q ss_pred             --------CCCCCceEEEEeCChHHHHHHHHHH----HhcC--CCCcCccccccccccCCCCCc---ccCCCCCCCCCCC
Q psy7288         132 --------PDCFNSGVFVFKPSESTYNALVEFA----LVNG--SFDDATRQLQKPLNMRNLPKS---FFQPPSTGSRSPS  194 (518)
Q Consensus       132 --------p~~FNSGVmVi~Ps~~~~~~Ll~~~----~~~~--s~d~~DQdl~~pL~mr~lpN~---~F~~~~~~di~p~  194 (518)
                              ..|||+||||||...|+.+++.+.+    ..+.  .+...|||.   |      |.   .|.+..       
T Consensus       403 i~~~~~p~~cYFNSGVmLINL~~WRe~nITek~~~~Le~n~~~~~~l~dqd~---L------N~~LlvF~g~v-------  466 (535)
T PLN02867        403 ISSNLDQERCAWLYGMNVFDLKAWRRTNITEAYHKWLKLSLNSGLQLWQPGA---L------PPALLAFKGHV-------  466 (535)
T ss_pred             hhccCCCCCcceecceeeeeHHHHHHhcHHHHHHHHHHhchhcccccccccc---c------chHHHHhcCcE-------
Confidence                    1368899999999999887776553    3332  255789999   9      85   676642       


Q ss_pred             CCccccCCCCCCCCcccccccccccc----cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         195 VSSISHSRENSADSAFGTSTITSTSS----SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       195 ~~~i~~Lr~~s~p~~YN~~~~~~y~y----~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                          ..|     +.+||+.. ..|.+    ....++++||||.|+.|||+....         ..++..|..+.
T Consensus       467 ----~~L-----D~rWNv~g-Lgy~~~~~~~~~i~~paIIHYnG~~KPW~e~~~---------~~yR~~W~kyl  521 (535)
T PLN02867        467 ----HPI-----DPSWHVAG-LGSRPPEVPREILESAAVLHFSGPAKPWLEIGF---------PEVRSLWYRHV  521 (535)
T ss_pred             ----EEC-----ChhhcccC-CCcccccchhhhcCCcEEEEECCCCCcccccCC---------CchhHHHHHhc
Confidence                677     88999843 23322    223578999999999999987642         35677775443

>PLN02742 Probable galacturonosyltransferase

Probab=99.67  E-value=4.3e-16  Score=167.51  Aligned_cols=147  Identities=14%  Similarity=0.056  Sum_probs=107.1

Q ss_pred             hhhhHhHhhhhcc-CcCeEEEecCCeEEcCCChhhhCCC----CcccccCCC-----------C----------C--CCC
Q psy7288          84 GITFTKIHAWRLT-QYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAG-----------W----------P--DCF  135 (518)
Q Consensus        84 ~~tftKL~~w~L~-eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~g-----------w----------p--~~F  135 (518)
                      ..+|.||++.++. +++||||||+|+||.+||++||+++    .++|+.|.+           |          +  .+|
T Consensus       338 ~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~f  417 (534)
T PLN02742        338 MLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDACGW  417 (534)
T ss_pred             HHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCcccc
Confidence            3588999999864 6899999999999999999999986    255555531           1          1  469


Q ss_pred             CceEEEEeCChHHHHHHHHHH---Hh-cCCCCcCccccccccccCCCCCcc---cCCCCCCCCCCCCCccccCCCCCCCC
Q psy7288         136 NSGVFVFKPSESTYNALVEFA---LV-NGSFDDATRQLQKPLNMRNLPKSF---FQPPSTGSRSPSVSSISHSRENSADS  208 (518)
Q Consensus       136 NSGVmVi~Ps~~~~~~Ll~~~---~~-~~s~d~~DQdl~~pL~mr~lpN~~---F~~~~~~di~p~~~~i~~Lr~~s~p~  208 (518)
                      |+|||||++..|+.+++.+.+   .+ +......|||.   |      |-+   |.+..           +.|     +.
T Consensus       418 NsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~ga---L------pp~LLaF~g~~-----------~~L-----D~  472 (534)
T PLN02742        418 AFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGT---L------PPGLLTFYGLT-----------EPL-----DR  472 (534)
T ss_pred             ccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccc---c------chHHHHHcCcc-----------eec-----Ch
Confidence            999999999999877665533   33 34445778999   8      753   76643           567     88


Q ss_pred             cccccccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhhc
Q psy7288         209 AFGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       209 ~YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~  265 (518)
                      .||....+ |.+   ....+++.||||.|+.|||.....         ..+...|+.+..
T Consensus       473 rWNv~gLG-~~~~v~~~~i~~aaILHynG~~KPWl~~~i---------~~yr~~W~kYl~  522 (534)
T PLN02742        473 RWHVLGLG-YDTNIDPRLIESAAVLHFNGNMKPWLKLAI---------ERYKPLWERYVN  522 (534)
T ss_pred             hheecccc-cccccchhhccCCeEEEECCCCCcccccCC---------cccchHHHHHHc
Confidence            88875432 211   235678999999999999987632         246667887763

>PLN02659 Probable galacturonosyltransferase

Probab=99.67  E-value=1e-16  Score=171.95  Aligned_cols=150  Identities=15%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             CCch--hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC----------------C-----
Q psy7288          80 RPDL--GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG----------------W-----  131 (518)
Q Consensus        80 rp~~--~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g----------------w-----  131 (518)
                      +|++  ..+|.||.+.++ .+++||||||+|+||.+||++||++|   . ++|+.|.+                +     
T Consensus       323 ~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i  402 (534)
T PLN02659        323 SPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLI  402 (534)
T ss_pred             CccceeHHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhh
Confidence            4544  358889999886 47999999999999999999999986   2 45555521                1     


Q ss_pred             -------CCCCCceEEEEeCChHHHHHHHH----HHHhc--CCCCcCccccccccccCCCCC---cccCCCCCCCCCCCC
Q psy7288         132 -------PDCFNSGVFVFKPSESTYNALVE----FALVN--GSFDDATRQLQKPLNMRNLPK---SFFQPPSTGSRSPSV  195 (518)
Q Consensus       132 -------p~~FNSGVmVi~Ps~~~~~~Ll~----~~~~~--~s~d~~DQdl~~pL~mr~lpN---~~F~~~~~~di~p~~  195 (518)
                             ..|||+|||+||...|+.+++.+    ++.++  ..+...|||+   |      |   ..|.+..        
T Consensus       403 ~~yFn~~~cYfNsGVlLINLk~WRe~nITek~l~~l~~n~~~~l~l~DQda---L------p~~LivF~g~v--------  465 (534)
T PLN02659        403 AKNFDPNECAWAYGMNIFDLEAWRKTNISSTYHHWLEENLKSDLSLWQLGT---L------PPGLIAFHGHV--------  465 (534)
T ss_pred             hhccCccccceecceeEeeHHHHHhcChHHHHHHHHHhccccccccccccc---c------hHHHHHhcCCE--------
Confidence                   03788899999999998666544    44443  2355679999   7      5   6687753        


Q ss_pred             CccccCCCCCCCCcccccccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         196 SSISHSRENSADSAFGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       196 ~~i~~Lr~~s~p~~YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                         +.|     +.+||+... .|.+   ....+++.||||.|..|||+....         ..++..|-.+.
T Consensus       466 ---~~L-----D~rWN~~gL-g~~~~~~~~~i~~paIIHYnG~~KPW~~~~~---------~~yr~~W~kYl  519 (534)
T PLN02659        466 ---HVI-----DPFWHMLGL-GYQENTSLADAESAGVVHFNGRAKPWLDIAF---------PQLRPLWAKYI  519 (534)
T ss_pred             ---EEC-----ChhheecCC-cccccccccccCCcEEEEECCCCCccccccC---------CcchhHHHHHh
Confidence               677     888987542 2322   123578999999999999998642         35566666655

>PLN02829 Probable galacturonosyltransferase

Probab=99.66  E-value=1.6e-16  Score=172.51  Aligned_cols=145  Identities=13%  Similarity=0.112  Sum_probs=104.1

Q ss_pred             hhhHhHhhhhcc-CcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC-----------C------------CCCCC
Q psy7288          85 ITFTKIHAWRLT-QYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG-----------W------------PDCFN  136 (518)
Q Consensus        85 ~tftKL~~w~L~-eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g-----------w------------p~~FN  136 (518)
                      .+|.||++.++. +++||||||+|+||.+||++||+++   . ++|+.|.+           |            ..|||
T Consensus       443 lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFN  522 (639)
T PLN02829        443 LNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHACGWA  522 (639)
T ss_pred             HHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCccccee
Confidence            578999998864 5899999999999999999999986   2 44554421           1            14789


Q ss_pred             ceEEEEeCChHHHHHHHHHH----HhcCCCCcCccccccccccCCCCCcc---cCCCCCCCCCCCCCccccCCCCCCCCc
Q psy7288         137 SGVFVFKPSESTYNALVEFA----LVNGSFDDATRQLQKPLNMRNLPKSF---FQPPSTGSRSPSVSSISHSRENSADSA  209 (518)
Q Consensus       137 SGVmVi~Ps~~~~~~Ll~~~----~~~~s~d~~DQdl~~pL~mr~lpN~~---F~~~~~~di~p~~~~i~~Lr~~s~p~~  209 (518)
                      +|||||+...|+.+++.+.+    ..+..-...|||.   |      |-+   |.+..           +.|     +.+
T Consensus       523 SGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlga---L------Pp~Ll~F~g~i-----------~~L-----D~r  577 (639)
T PLN02829        523 YGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGT---L------PPGLITFWKRT-----------YPL-----DRS  577 (639)
T ss_pred             cceEEEeHHHHHHhChHHHHHHHHHHccCCccccccC---C------ChHHHHhcCce-----------Eec-----Chh
Confidence            99999999999877765443    2332223578999   8      764   45532           567     888


Q ss_pred             ccccccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         210 FGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       210 YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                      ||+...+ |.+   ....+++.||||.|+.|||.....         ..++..|..+.
T Consensus       578 WNv~GLG-y~~~v~~~~i~~aaIIHynG~~KPWle~~i---------~~yr~lW~kYl  625 (639)
T PLN02829        578 WHVLGLG-YNPNVNQRDIERAAVIHYNGNMKPWLEIGI---------PKYRNYWSKYV  625 (639)
T ss_pred             heecCCC-CCcccchhcccCCeEEEECCCCCccccCCc---------ccchHHHHHHH
Confidence            8887543 222   335678899999999999987532         34666666654

>PLN02870 Probable galacturonosyltransferase

Probab=99.64  E-value=1.4e-16  Score=170.86  Aligned_cols=149  Identities=17%  Similarity=0.135  Sum_probs=105.6

Q ss_pred             CCch--hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC----------CC----------
Q psy7288          80 RPDL--GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG----------WP----------  132 (518)
Q Consensus        80 rp~~--~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g----------wp----------  132 (518)
                      +|++  ..+|.||++.++ .+++||||||+|+||.+||.+||++|   . ++|+.|.+          ..          
T Consensus       322 ~p~ylS~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i  401 (533)
T PLN02870        322 SPKYISLLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLI  401 (533)
T ss_pred             CccccCHHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchh
Confidence            4444  357889999886 46999999999999999999999986   2 45555521          01          


Q ss_pred             --------CCCCceEEEEeCChHHHHHHHHH----HHhc--CCCCcCccccccccccCCCCC---cccCCCCCCCCCCCC
Q psy7288         133 --------DCFNSGVFVFKPSESTYNALVEF----ALVN--GSFDDATRQLQKPLNMRNLPK---SFFQPPSTGSRSPSV  195 (518)
Q Consensus       133 --------~~FNSGVmVi~Ps~~~~~~Ll~~----~~~~--~s~d~~DQdl~~pL~mr~lpN---~~F~~~~~~di~p~~  195 (518)
                              .|||+||||||...|+.+++.+.    +.++  ..+...|||.   |      |   ..|.+..        
T Consensus       402 ~~~fd~~~cyfNSGVlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQda---L------p~~livf~g~v--------  464 (533)
T PLN02870        402 AKNLDPEECAWAYGMNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGT---L------PPALIAFKGHV--------  464 (533)
T ss_pred             hcccCcccceeeccchhccHHHHHHcChHHHHHHHHHhhhhcCceeccccc---c------cHhHHHhcCce--------
Confidence                    25669999999999887666544    4333  2456889999   7      5   5676643        


Q ss_pred             CccccCCCCCCCCcccccccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         196 SSISHSRENSADSAFGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       196 ~~i~~Lr~~s~p~~YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                         +.|     +.+||+... .|..   ....++++||||.|..|||+...          .+.++.+|..|
T Consensus       465 ---~~L-----D~rWN~~gL-gy~~~~~~~~i~~aaIIHY~G~~KPW~~~~----------~~~yr~~W~kY  517 (533)
T PLN02870        465 ---HPI-----DPSWHMLGL-GYQSKTNIESVKKAAVIHYNGQSKPWLEIG----------FEHLRPFWTKY  517 (533)
T ss_pred             ---EEC-----ChHHhcCCC-CCcccccccccCCcEEEEECCCCCCccccC----------ccchhHHHHHH
Confidence               577     888997542 2322   22367899999999999998643          13355666666

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase

Probab=99.60  E-value=1.6e-15  Score=164.61  Aligned_cols=145  Identities=12%  Similarity=0.064  Sum_probs=103.2

Q ss_pred             hhhHhHhhhhcc-CcCeEEEecCCeEEcCCChhhhCCC---C-cccccCCC-----------C------------CCCCC
Q psy7288          85 ITFTKIHAWRLT-QYSKCVFLDADVLIVQNCDELFDRE---E-LSAAPDAG-----------W------------PDCFN  136 (518)
Q Consensus        85 ~tftKL~~w~L~-eydKVVYLDaD~LVl~nIDeLF~~~---e-laAapD~g-----------w------------p~~FN  136 (518)
                      .+|.||++..+. +++||||||+|+||.+||.+||+++   . ++|+.|.+           |            ..|||
T Consensus       461 lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfN  540 (657)
T PLN02910        461 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWA  540 (657)
T ss_pred             HHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChhhhhccCCCCceee
Confidence            578899998864 5899999999999999999999986   2 33444321           1            13456


Q ss_pred             ceEEEEeCChHHHHHHHH---HHHh-cCCCCcCccccccccccCCCCC---cccCCCCCCCCCCCCCccccCCCCCCCCc
Q psy7288         137 SGVFVFKPSESTYNALVE---FALV-NGSFDDATRQLQKPLNMRNLPK---SFFQPPSTGSRSPSVSSISHSRENSADSA  209 (518)
Q Consensus       137 SGVmVi~Ps~~~~~~Ll~---~~~~-~~s~d~~DQdl~~pL~mr~lpN---~~F~~~~~~di~p~~~~i~~Lr~~s~p~~  209 (518)
                      +|||||+...|+.+++.+   ++.+ +......|||.   |      |   ..|.+..           ..|     +.+
T Consensus       541 sGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgs---L------PpgLLvF~g~i-----------~pL-----D~r  595 (657)
T PLN02910        541 FGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGS---L------PPGLITFYNLT-----------YPL-----DRS  595 (657)
T ss_pred             cccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCC---C------ChHHHHHhCce-----------eec-----Cch
Confidence            699999999998766654   3433 34566789999   9      8   4565542           567     888


Q ss_pred             ccccccccccc---cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhh
Q psy7288         210 FGTSTITSTSS---SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDIT  264 (518)
Q Consensus       210 YN~~~~~~y~y---~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~  264 (518)
                      ||....+ |..   ....+++.||||.|+.|||.....         ..++..|-.++
T Consensus       596 WNv~GLG-yd~~v~~~~i~~AAVLHynG~~KPWl~l~i---------~~Yr~~W~kYl  643 (657)
T PLN02910        596 WHVLGLG-YDPALNQTEIENAAVVHYNGNYKPWLDLAI---------AKYKPYWSRYV  643 (657)
T ss_pred             heecCCC-CCcccccccccCcEEEEeCCCCCcccccCc---------ccchHHHHHHc
Confidence            8887533 222   335678999999999999987532         24555555544

>KOG1950|consensus

Probab=99.36  E-value=2.1e-13  Score=143.85  Aligned_cols=207  Identities=22%  Similarity=0.238  Sum_probs=141.3

Q ss_pred             hhhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhC-CCCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCC
Q psy7288          83 LGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFD-REELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGS  161 (518)
Q Consensus        83 ~~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~-~~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s  161 (518)
                      .+..+.|+++|.+..+++.+.+|+|..++.+.+.+|. ...+++.+-  .+..||+|.||+.|+...|++++++......
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~--l~~~~n~~~~v~~ps~~~~~~~~~~~~~~~~  226 (369)
T KOG1950|consen  149 NELNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNI--LPLIFNSGLLVFEPSLCNYKDLMEFSEEFES  226 (369)
T ss_pred             chhcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCC--ccceeccCccccCCCccchhhHHHhhcccCC
Confidence            3567889999999999999999999999999999999 778877653  2356999999999999999998888888888


Q ss_pred             CCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccc-------cccCCCceEEcccC
Q psy7288         162 FDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS-------SVSGGGLQIAHPRA  234 (518)
Q Consensus       162 ~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y-------~~~~~~~kIiHf~g  234 (518)
                      +.|+|||+   |      |.+|..+.           .+.     +..||........+       ..-.-....+||.|
T Consensus       227 ~~~~~q~~---l------~~~f~~~~-----------~~~-----~~~~n~~~~~~~~~p~~~~l~~~~~~~~~~~~y~~  281 (369)
T KOG1950|consen  227 YNGADQGF---L------HLIFSWIP-----------DRP-----PPSVNLNLAKLWRHPKKNDLSRASSVLRYALHYLG  281 (369)
T ss_pred             CCCccchh---h------HHHhhccc-----------CCC-----cccccccccccccCccccchhhcccccchhhhccc
Confidence            99999999   9      99999874           122     44455443332211       01122345669999


Q ss_pred             CCCCCCccccchhhhh------hhhhHHHhhhhhhhcccccCCCCCCCCccccccccceeeecccchhhHHHhhhHhhhh
Q psy7288         235 HSSPASLQQTYASAQQ------QHQQHLKQRSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARAL  308 (518)
Q Consensus       235 ~~KPW~~~~~~~~~~~------~~~~~~~~~WWdi~~~l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~  308 (518)
                      ..|||.....+.....      ..-...+..||++|+..+..-.               -++..              ..
T Consensus       282 ~~~p~~~~~~~~~n~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---------------~~~~~--------------~~  332 (369)
T KOG1950|consen  282 ANKPELCYRDFDCNLDGDEFPRKDIDSLHKKWWDVYDDMSLDLK---------------VHCKL--------------WA  332 (369)
T ss_pred             cCCCCccccCcccccccccccchhHHHHHhccchhhccCchhhh---------------hcccc--------------cc
Confidence            7799987665543321      1223456779999965332100               00000              00


Q ss_pred             ccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHHH
Q psy7288         309 AQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIW  350 (518)
Q Consensus       309 sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nIq  350 (518)
                      .+ ....+    ......+..+..||.+++||+++++|..||
T Consensus       333 ~~-~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (369)
T KOG1950|consen  333 KE-STEYP----LVRPQAELAAFPEEHDKIDYKAPRAFKAIQ  369 (369)
T ss_pred             cc-ccccc----hhhchhHHhhcccccccccccCchhhhccC
Confidence            01 11101    111233444899999999999999998875

>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose

Probab=98.32  E-value=2.1e-06  Score=87.31  Aligned_cols=118  Identities=22%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             EEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEEC--CCCCHHHHHHHHhcCCeEEEEe--eeCCCchhhhcccCCCch
Q psy7288           8 AWVTLATNDSYALGALVVANSLKRVNTVHDLAILIT--PGVTLAMKNELLKVFNFVKEVD--VFDSRDETNLRLLSRPDL   83 (518)
Q Consensus         8 A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt--~~vs~~~r~~L~~~~~~v~~V~--~l~~~d~~~l~~~~rp~~   83 (518)
                      .+|+.+ ++.|+..+..+++.||+.|.+.+|-|++.  .+++++.++.|.. ...|..|+  .+-..+..... +.+.  
T Consensus         3 GIVi~~-g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~-~q~v~~vd~~~~~~~~~~~~~-~~~~--   77 (271)
T PF11051_consen    3 GIVITA-GDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP-DQDVWFVDASCVIDPDYLGKS-FSKK--   77 (271)
T ss_pred             EEEEEe-cCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh-hhhhheecceEEeeccccccc-cccC--
Confidence            355544 55999999999999999999999988876  6799999988876 11111111  11011110100 0000  


Q ss_pred             hhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCCCcccccCCCCCCCCCceEEEE
Q psy7288          84 GITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVF  142 (518)
Q Consensus        84 ~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~elaAapD~gwp~~FNSGVmVi  142 (518)
                       .-..|..+.-+..++.|||||+|++.++|++.||+.+           .|-.+|.+.+
T Consensus        78 -~~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~-----------~yk~tG~lfw  124 (271)
T PF11051_consen   78 -GFQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE-----------EYKKTGALFW  124 (271)
T ss_pred             -CchhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc-----------cccccCEEEE
Confidence             2345665555788999999999999999999999965           4566777777

It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation

>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases []

Probab=97.35  E-value=0.001  Score=64.50  Aligned_cols=130  Identities=16%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             CHHHHHHHHhcCCeEEEEeeeCCCchhhhcccC-CCchhhhhHhHhhhh--ccCcCeEEEecCCeEEcCCChhhhCCC--
Q psy7288          47 TLAMKNELLKVFNFVKEVDVFDSRDETNLRLLS-RPDLGITFTKIHAWR--LTQYSKCVFLDADVLIVQNCDELFDRE--  121 (518)
Q Consensus        47 s~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~-rp~~~~tftKL~~w~--L~eydKVVYLDaD~LVl~nIDeLF~~~--  121 (518)
                      ++++.+.|++.+..+..+............... +.+...++.|+.+..  |...-.|+|+|+|++.++|..++|+..  
T Consensus        12 D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~~~~   91 (212)
T PF03407_consen   12 DEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFENPDA   91 (212)
T ss_pred             CHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhccCCC
Confidence            467778888887776544433111110101111 112235667766554  334457999999999999999999322  


Q ss_pred             CcccccCC-------CCCCCCCceEEEEeCChHHHHHH---HHHHHhcCCCCcCccccccccccCCCCCcccCCCC
Q psy7288         122 ELSAAPDA-------GWPDCFNSGVFVFKPSESTYNAL---VEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPS  187 (518)
Q Consensus       122 elaAapD~-------gwp~~FNSGVmVi~Ps~~~~~~L---l~~~~~~~s~d~~DQdl~~pL~mr~lpN~~F~~~~  187 (518)
                      .+....|.       +....+|+|+|.++++..+..-+   ++.+.+.  -...||.+   |      |.++....
T Consensus        92 Di~~~~d~~~~~~~~~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~--~~~~DQ~~---~------n~~l~~~~  156 (212)
T PF03407_consen   92 DILFSSDGWDGTNSDRNGNLVNTGFYYFRPTPRTIAFLEDWLERMAES--PGCWDQQA---F------NELLREQA  156 (212)
T ss_pred             ceEEecCCCcccchhhcCCccccceEEEecCHHHHHHHHHHHHHHHhC--CCcchHHH---H------HHHHHhcc
Confidence            23333332       12245799999999998774444   4444333  12359999   9      99887653

>KOG1879|consensus

Probab=96.53  E-value=0.014  Score=69.12  Aligned_cols=156  Identities=16%  Similarity=0.195  Sum_probs=89.1

Q ss_pred             EEEEEecChhhHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHH----HhcCCeEEEEeeeCCCchhhhcccCCCc
Q psy7288           8 AWVTLATNDSYALGALVVANSLKRVNT-VHDLAILITPGVTLAMKNEL----LKVFNFVKEVDVFDSRDETNLRLLSRPD   82 (518)
Q Consensus         8 A~VTl~tnd~Yl~ga~VL~~SLr~~~s-~~~lvvLvt~~vs~~~r~~L----~~~~~~v~~V~~l~~~d~~~l~~~~rp~   82 (518)
                      -..+++...-|=.-+.+++.|+.+|.. .-.+++| ..-+|+.-++.+    +.++.+...|.+ ..+..-+-.. .+.|
T Consensus      1183 NIFSvASGHLYERflrIMm~SvlknTktpVKFWfL-kNyLSPtFKe~iP~mA~eYnFeyElv~Y-kWPrWLhqQ~-EKQR 1259 (1470)
T KOG1879|consen 1183 NIFSVASGHLYERFLRIMMLSVLKNTKTPVKFWFL-KNYLSPTFKESIPHMAKEYNFEYELVQY-KWPRWLHQQT-EKQR 1259 (1470)
T ss_pred             EEEeeccccHHHHHHHHHHHHHHhCCCCceeEEee-hhhcChHHHHHHHHHHHHhCceEEEEEe-cCchhhhhhh-hhhh
Confidence            345678889999999999999998732 2344444 335776555544    345555555553 1221101000 0111


Q ss_pred             hhhhhHhHhhhhc--cCcCeEEEecCCeEEcCCChhhhCCCCcccc-----c--C-----CC---C-----------CCC
Q psy7288          83 LGITFTKIHAWRL--TQYSKCVFLDADVLIVQNCDELFDREELSAA-----P--D-----AG---W-----------PDC  134 (518)
Q Consensus        83 ~~~tftKL~~w~L--~eydKVVYLDaD~LVl~nIDeLF~~~elaAa-----p--D-----~g---w-----------p~~  134 (518)
                      ....|-=|++--|  ...+||||+|||.||+.||+||.+.+ |..|     |  |     -|   |           ..|
T Consensus      1260 iiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~dfd-l~GaPygYtPfCdsR~EMDGyRFWK~GYW~~hL~grkY 1338 (1470)
T KOG1879|consen 1260 IIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMDFD-LGGAPYGYTPFCDSRREMDGYRFWKQGYWKKHLRGRKY 1338 (1470)
T ss_pred             hhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHhcc-cCCCccccCccccccccccchhHHhhhHHHHHhccCcc
Confidence            1122222222222  37899999999999999999998876 2222     2  1     12   2           135


Q ss_pred             CCceEEEEeCChHHHHHHH--HHHHh--------cCCCCcCcccc
Q psy7288         135 FNSGVFVFKPSESTYNALV--EFALV--------NGSFDDATRQL  169 (518)
Q Consensus       135 FNSGVmVi~Ps~~~~~~Ll--~~~~~--------~~s~d~~DQdl  169 (518)
                      ==|.+.|++  +..|++|-  +.++.        ..++..-|||+
T Consensus      1339 HISALYVVD--LkrFReiaAGDrLR~qYQ~LS~DPNSLsNLDQDL 1381 (1470)
T KOG1879|consen 1339 HISALYVVD--LKRFREIAAGDRLRGQYQALSQDPNSLSNLDQDL 1381 (1470)
T ss_pred             ccceeeeee--HHHHHhcccchHHHHHHHhhcCCcchhhhccccc
Confidence            557888887  56666552  22221        23555668998

>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif

Probab=93.38  E-value=0.058  Score=54.09  Aligned_cols=92  Identities=23%  Similarity=0.269  Sum_probs=20.4

Q ss_pred             hhhhHhHhhhh--c---cCcCeEEEecCCeEEcCCChhhhC-------CCCcc-----ccc-C---------CCC-----
Q psy7288          84 GITFTKIHAWR--L---TQYSKCVFLDADVLIVQNCDELFD-------REELS-----AAP-D---------AGW-----  131 (518)
Q Consensus        84 ~~tftKL~~w~--L---~eydKVVYLDaD~LVl~nIDeLF~-------~~ela-----Aap-D---------~gw-----  131 (518)
                      ..+|.|+.+-+  |   .+++=|+|||+|+||.+.=-.|.+       ++.+.     -.+ +         .+.     
T Consensus        58 ~~~W~K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li  137 (239)
T PF05637_consen   58 PGSWAKIPALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLI  137 (239)
T ss_dssp             HHHHTHHHHHHHHHHH-TT-SEEEEE-TTEEE------------------------------------------------
T ss_pred             ChhhHHHHHHHHHHHhCCCCCEEEEEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccc
Confidence            45788987765  4   567999999999999974333321       11000     000 0         000     


Q ss_pred             ----CCCCCceEEEEeCChHHHHHHHHHHHh----cCCC---CcCccccccccccCCCCCcccCC
Q psy7288         132 ----PDCFNSGVFVFKPSESTYNALVEFALV----NGSF---DDATRQLQKPLNMRNLPKSFFQP  185 (518)
Q Consensus       132 ----p~~FNSGVmVi~Ps~~~~~~Ll~~~~~----~~s~---d~~DQdl~~pL~mr~lpN~~F~~  185 (518)
                          -..+|+|+|+++-+.+... +++.+..    ...+   ..+||+.   |      -.++..
T Consensus       138 ~t~d~~gLNtGsFliRns~ws~~-fLd~w~~~~~~~~~~~~~~~~EQsA---l------~~ll~~  192 (239)
T PF05637_consen  138 ITQDWNGLNTGSFLIRNSPWSRD-FLDAWADPLYRNYDWDQLEFDEQSA---L------EHLLQW  192 (239)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccccccccc---c------cccccc
Confidence                1469999999999988864 4454433    1122   2678999   8      666653

This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.

>KOG1928|consensus

Probab=92.00  E-value=0.18  Score=53.63  Aligned_cols=55  Identities=29%  Similarity=0.587  Sum_probs=38.0

Q ss_pred             EEecCCeEEcCCChhhhCCCCcccccC-CCCCCCCCceEEEEeCChHHHH-HHHHHHHhc
Q psy7288         102 VFLDADVLIVQNCDELFDREELSAAPD-AGWPDCFNSGVFVFKPSESTYN-ALVEFALVN  159 (518)
Q Consensus       102 VYLDaD~LVl~nIDeLF~~~elaAapD-~gwp~~FNSGVmVi~Ps~~~~~-~Ll~~~~~~  159 (518)
                      ||||.|+||++||..|=+.  |+..++ ..| .+.|.+||+|........ .|-++....
T Consensus       242 vYLDTDvIvLksl~~l~N~--ig~~~~~~~~-~~lnnavl~F~k~Hpfl~~cl~eF~~tf  298 (409)
T KOG1928|consen  242 VYLDTDVIVLKSLSNLRNV--IGVDPATQAW-TRLNNAVLIFDKNHPFLLECLREFALTY  298 (409)
T ss_pred             EEeeccEEEeccccccccc--ccccchhhHH-HhhcCceeecCCCCHHHHHHHHHHHHhc
Confidence            7999999999999998753  221222 122 679999999998766543 444555543

>KOG1950|consensus

Probab=90.59  E-value=0.017  Score=61.42  Aligned_cols=36  Identities=31%  Similarity=0.463  Sum_probs=33.1

Q ss_pred             hhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCC
Q psy7288          86 TFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDRE  121 (518)
Q Consensus        86 tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~  121 (518)
                      .+.++.+|.+.++.+.+|+|.|+-+..+++++|+..
T Consensus       113 ~~~~~~~~~~~~~~a~i~~~~~i~~~~~~~~~~~v~  148 (369)
T KOG1950|consen  113 RDDKIKIWRLIEDGAAIYLVDDIQRFRNDDANFDVP  148 (369)
T ss_pred             cccceeecceeccCceEEEecchhhccCcccccccc
Confidence            377899999999999999999999999999999875

>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=86.25  E-value=2.5  Score=37.11  Aligned_cols=93  Identities=23%  Similarity=0.290  Sum_probs=50.4

Q ss_pred             EEEecCh-hhHHHHHHHHHHHHhhCCCCeE-EEEECCCCCHHHHHHHHhcC---CeEEEEeeeCCCchhhhcccCCCchh
Q psy7288          10 VTLATND-SYALGALVVANSLKRVNTVHDL-AILITPGVTLAMKNELLKVF---NFVKEVDVFDSRDETNLRLLSRPDLG   84 (518)
Q Consensus        10 VTl~tnd-~Yl~ga~VL~~SLr~~~s~~~l-vvLvt~~vs~~~r~~L~~~~---~~v~~V~~l~~~d~~~l~~~~rp~~~   84 (518)
                      |+.+.|. .|+.   -++.||++. +..++ +++++++-+++..+.+++..   ..+..+.   ...  +        .+
T Consensus         3 vip~~n~~~~l~---~~l~sl~~q-~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~---~~~--n--------~g   65 (169)
T PF00535_consen    3 VIPTYNEAEYLE---RTLESLLKQ-TDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIR---NPE--N--------LG   65 (169)
T ss_dssp             EEEESS-TTTHH---HHHHHHHHH-SGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEE---HCC--C--------SH
T ss_pred             EEEeeCCHHHHH---HHHHHHhhc-cCCCEEEEEecccccccccccccccccccccccccc---ccc--c--------cc
Confidence            4455665 5554   556666666 33333 23445454667777777653   3333222   110  1        12


Q ss_pred             hhhHhHhhhhccCcCeEEEecCCeEEcCC-ChhhhC
Q psy7288          85 ITFTKIHAWRLTQYSKCVFLDADVLIVQN-CDELFD  119 (518)
Q Consensus        85 ~tftKL~~w~L~eydKVVYLDaD~LVl~n-IDeLF~  119 (518)
                      ........++....+-|++||+|.++..+ |.+|++
T Consensus        66 ~~~~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~  101 (169)
T PF00535_consen   66 FSAARNRGIKHAKGEYILFLDDDDIISPDWLEELVE  101 (169)
T ss_dssp             HHHHHHHHHHH--SSEEEEEETTEEE-TTHHHHHHH
T ss_pred             ccccccccccccceeEEEEeCCCceEcHHHHHHHHH
Confidence            33345556667778899999999999987 555554

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....

>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function

Probab=86.00  E-value=3.8  Score=38.13  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=44.6

Q ss_pred             CCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeE
Q psy7288           5 TGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFV   61 (518)
Q Consensus         5 ~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v   61 (518)
                      ....||| +++++++..++-++.|++++.++..++ |++-|+++...+.|+..+..+
T Consensus        60 ~~vvfVS-a~S~~h~~~~~~~i~si~~~~P~~k~i-lY~LgL~~~~i~~L~~~~~n~  114 (142)
T PF07801_consen   60 SDVVFVS-ATSDNHFNESMKSISSIRKFYPNHKII-LYDLGLSEEQIKKLKKNFCNV  114 (142)
T ss_pred             CccEEEE-EecchHHHHHHHHHHHHHHHCCCCcEE-EEeCCCCHHHHHHHHhcCCce
Confidence            4567777 556888899999999999999998876 567899999999998754433

>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function

Probab=85.04  E-value=11  Score=33.20  Aligned_cols=87  Identities=16%  Similarity=0.109  Sum_probs=49.8

Q ss_pred             EecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCchhhhhHhHh
Q psy7288          12 LATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLGITFTKIH   91 (518)
Q Consensus        12 l~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~~~tftKL~   91 (518)
                      .+.|.  ...+.-++.||.+......-++++.++-.+...+.+++....+   .++....  +        .+....+..
T Consensus         4 ~~~~~--~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~---~~~~~~~--~--------~g~~~a~n~   68 (166)
T cd04186           4 VNYNS--LEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEV---RLIRNGE--N--------LGFGAGNNQ   68 (166)
T ss_pred             EecCC--HHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCe---EEEecCC--C--------cChHHHhhH
Confidence            34554  3445667778877643222344555566666777777665422   2222211  1        122233445


Q ss_pred             hhhccCcCeEEEecCCeEEcCC
Q psy7288          92 AWRLTQYSKCVFLDADVLIVQN  113 (518)
Q Consensus        92 ~w~L~eydKVVYLDaD~LVl~n  113 (518)
                      +.+..+++-|+|||+|.++..+
T Consensus        69 ~~~~~~~~~i~~~D~D~~~~~~   90 (166)
T cd04186          69 GIREAKGDYVLLLNPDTVVEPG   90 (166)
T ss_pred             HHhhCCCCEEEEECCCcEECcc
Confidence            5555689999999999998765

GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.

>PHA03247 large tegument protein UL36; Provisional

Probab=82.69  E-value=52  Score=43.32  Aligned_cols=10  Identities=30%  Similarity=0.631  Sum_probs=5.1

Q ss_pred             hhcccccccC
Q psy7288         327 HIHRQHWEEG  336 (518)
Q Consensus       327 ~~rr~~WE~G  336 (518)
                      +.+...|-.|
T Consensus      2530 ~p~~~~w~~g 2539 (3151)
T PHA03247       2530 HPRMLTWIRG 2539 (3151)
T ss_pred             Cchhhhhhhh
Confidence            3345566554

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan

Probab=82.49  E-value=7  Score=37.40  Aligned_cols=92  Identities=10%  Similarity=0.026  Sum_probs=49.1

Q ss_pred             EEEEEecChhhHHHHHHHHHHHHhhCC---CCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCchh
Q psy7288           8 AWVTLATNDSYALGALVVANSLKRVNT---VHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDLG   84 (518)
Q Consensus         8 A~VTl~tnd~Yl~ga~VL~~SLr~~~s---~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~~   84 (518)
                      +.|..+.|..  ..+.-++.||++...   .+.++ +++++-+++..+.++.+......|.++.....           +
T Consensus         3 sIiip~~n~~--~~l~~~l~sl~~q~~~~~~~evi-vvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~~-----------~   68 (249)
T cd02525           3 SIIIPVRNEE--KYIEELLESLLNQSYPKDLIEII-VVDGGSTDGTREIVQEYAAKDPRIRLIDNPKR-----------I   68 (249)
T ss_pred             EEEEEcCCch--hhHHHHHHHHHhccCCCCccEEE-EEeCCCCccHHHHHHHHHhcCCeEEEEeCCCC-----------C
Confidence            4455556643  334555778876543   33444 45556666666666665433222333322210           1


Q ss_pred             hhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288          85 ITFTKIHAWRLTQYSKCVFLDADVLIVQN  113 (518)
Q Consensus        85 ~tftKL~~w~L~eydKVVYLDaD~LVl~n  113 (518)
                      .....-..++...+|-+++||+|.++..+
T Consensus        69 ~~~a~N~g~~~a~~d~v~~lD~D~~~~~~   97 (249)
T cd02525          69 QSAGLNIGIRNSRGDIIIRVDAHAVYPKD   97 (249)
T ss_pred             chHHHHHHHHHhCCCEEEEECCCccCCHH
Confidence            11123334445578999999999987543

Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.

>PHA03247 large tegument protein UL36; Provisional

Probab=82.45  E-value=26  Score=45.83  Aligned_cols=10  Identities=20%  Similarity=0.345  Sum_probs=4.3

Q ss_pred             HHHhhCCCCe
Q psy7288          28 SLKRVNTVHD   37 (518)
Q Consensus        28 SLr~~~s~~~   37 (518)
                      +||+..+..|
T Consensus      1930 tlREA~S~ID 1939 (3151)
T PHA03247       1930 ELREATSELD 1939 (3151)
T ss_pred             ehhhhhhhcc
Confidence            4444444433

>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

Probab=82.13  E-value=6.4  Score=33.45  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=47.9

Q ss_pred             EEecChhhHHHHHHHHHHHHhhCC-CCeEEEEECCCCCHHHHHHHHhcCCe---EEEEeeeCCCchhhhcccCCCchhhh
Q psy7288          11 TLATNDSYALGALVVANSLKRVNT-VHDLAILITPGVTLAMKNELLKVFNF---VKEVDVFDSRDETNLRLLSRPDLGIT   86 (518)
Q Consensus        11 Tl~tnd~Yl~ga~VL~~SLr~~~s-~~~lvvLvt~~vs~~~r~~L~~~~~~---v~~V~~l~~~d~~~l~~~~rp~~~~t   86 (518)
                      .++.|.  ...+.-++.||.+.+. .+.++| ++.+-++...+.+.+....   +..+.  ...           ..+..
T Consensus         3 i~~~~~--~~~l~~~l~s~~~~~~~~~~i~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~g~~   66 (156)
T cd00761           3 IPAYNE--EPYLERCLESLLAQTYPNFEVIV-VDDGSTDGTLEILEEYAKKDPRVIRVI--NEE-----------NQGLA   66 (156)
T ss_pred             EeecCc--HHHHHHHHHHHHhCCccceEEEE-EeCCCCccHHHHHHHHHhcCCCeEEEE--ecC-----------CCChH
Confidence            344454  3445667777777653 344444 4445555566555554332   11111  111           01222


Q ss_pred             hHhHhhhhccCcCeEEEecCCeEEcCCCh
Q psy7288          87 FTKIHAWRLTQYSKCVFLDADVLIVQNCD  115 (518)
Q Consensus        87 ftKL~~w~L~eydKVVYLDaD~LVl~nID  115 (518)
                      ..........+++.|+++|+|.++..+.-
T Consensus        67 ~~~~~~~~~~~~d~v~~~d~D~~~~~~~~   95 (156)
T cd00761          67 AARNAGLKAARGEYILFLDADDLLLPDWL   95 (156)
T ss_pred             HHHHHHHHHhcCCEEEEECCCCccCccHH
Confidence            33334444458999999999999877643

Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
1ll2_A	333	Glycogenin-1; protein-substrate complex, beta-alph	2e-64
3u2u_A	263	Glycogenin-1, GN-1, GN1; structural genomics, stru	8e-49
1g9r_A	311	Glycosyl transferase; alpha-beta structure; HET: U	5e-11
3tzt_A	276	Glycosyl transferase family 8; structural genomics	6e-11
3kys_B	125	YAP65, 65 kDa YES-associated protein; immunoglobul	3e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-10
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-04
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	7e-08
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	7e-06
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	4e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-05
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	9e-07
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	1e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-05
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	4e-06
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	5e-06
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	5e-06
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	5e-06
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	6e-06
1ymz_A	43	CC45; artificial protein, computational design, un	7e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-06
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	6e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	3e-04
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	9e-06
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	9e-06
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	9e-06
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	1e-05
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	1e-05
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	1e-05
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-05
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	3e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	3e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-04
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	4e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	4e-05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-04
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	4e-05
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus} Leng	6e-05
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	7e-05
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	9e-05
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	1e-04
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	2e-04
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
3k8t_A	888	Ribonucleoside-diphosphate reductase large chain;	6e-04
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	6e-04

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333

 Score =  211 bits (538), Expect = 2e-64
 Identities = 124/365 (33%), Positives = 175/365 (47%), Gaps = 42/365 (11%)

Query: 4   VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
           +T  A+VTL TND+YA GALV+ +SLK+  T   LA+L TP V+  M+  L  VF+ V  
Sbjct: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 60

Query: 64  VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
           VD+ DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REEL
Sbjct: 61  VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREEL 120

Query: 124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFF 183
           SAAPD GWPDCFNSGVFV++PS  TYN L+  A   GSFD   + L              
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIR 180

Query: 184 QPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGLQIAH---------PRA 234
           +         S+S  S+     A                 G   ++ H            
Sbjct: 181 KHLPFIYNLSSISIYSYLPAFKAF----------------GANAKVVHFLGQTKPWNYTY 224

Query: 235 HSSPASLQQTYASAQQQHQQHLKQ-RSYDITTVLDELGPLPPGWEQARTAEGQVYYLKGV 293
            +   S++         H Q L        T+V+  L       +               
Sbjct: 225 DTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQFGLVQDTCSYQ---------- 274

Query: 294 LFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKI 353
                     ++ A++ + +G   +  Q        ++ WE+G  DY+G DS+DNI KK+
Sbjct: 275 ------HVEDVSGAVSHLSLGETPATTQPFVSSEERKERWEQGQADYMGADSFDNIKKKL 328

Query: 354 SQTIE 358
              ++
Sbjct: 329 DTYLQ 333

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263

 Score =  168 bits (426), Expect = 8e-49
 Identities = 94/156 (60%), Positives = 116/156 (74%)

Query: 8   AWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVF 67
           A+VTL TND+YA GALV+ +SLK+  T   L +L TP V+ +M+  L  VF+ V  VDV 
Sbjct: 6   AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVL 65

Query: 68  DSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAP 127
           DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LFDREELSAAP
Sbjct: 66  DSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAP 125

Query: 128 DAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163
           D GWPDCFNSGVFV++PS  TYN L+  A   GSFD
Sbjct: 126 DPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFD 161

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 30/160 (18%)

Query: 10  VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKVF-NFVKEVDVF 67
           +  A +D+YA    V A S++  +   ++   ++  G++ A +  +          +   
Sbjct: 3   IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFI 62

Query: 68  DSRDETNLRLLSRPDLGITFTKIHAWRL------TQYSKCVFLDADVLIVQNCDELFDRE 121
           D  +  +          I+ T  +A RL          K ++LD DVL+  +   L+D +
Sbjct: 63  DV-NPEDFAGFPLNIRHISIT-TYA-RLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTD 119

Query: 122 ----ELSAAPDAGW--------------PDC-FNSGVFVF 142
                L A+ D                  +  FN+GV + 
Sbjct: 120 LGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLI 159

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276

 Score = 62.2 bits (151), Expect = 6e-11
 Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 36/184 (19%)

Query: 10  VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKVF-NFVKEVDVF 67
           + L  +++Y     V+  S+   N      + LI   ++     +L +    F   +   
Sbjct: 8   LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPI 67

Query: 68  DSRDETNLRLLSRPDLGITFTKIHAWRL-------TQYSKCVFLDADVLIVQNCDELFDR 120
            + D+    L S   +   + K   +RL           + ++LD D+L++   D+L   
Sbjct: 68  RATDD----LFSFAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT 123

Query: 121 E----ELSAAPDAGWPD---------------CFNSGVFVFKPS----ESTYNALVEFAL 157
           +     L+AA   G  D                +NSG+ +        E   + +  F  
Sbjct: 124 DISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVE 183

Query: 158 VNGS 161
            N  
Sbjct: 184 DNHM 187

>3kys_B YAP65, 65 kDa YES-associated protein; immunoglobulin-like fold, activator, disease mutation, DNA- binding, nucleus, phosphoprotein, transcription; 2.80A {Homo sapiens} PDB: 3jua_B Length = 125

 Score = 56.9 bits (136), Expect = 3e-10
 Identities = 36/115 (31%), Positives = 44/115 (38%), Gaps = 35/115 (30%)

Query: 163 DDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSV 222
             A      P+ +R LP SFF+PP   S         HSR+ S D+              
Sbjct: 30  KTANVPQTVPMRLRKLPDSFFKPPEPKS---------HSRQASTDAGTA----------- 69

Query: 223 SGGGLQIAHPRAHSSPASLQQTYASAQ-------------QQHQQHLKQRSYDIT 264
             G L   H RAHSSPASLQ    S                   QHL+Q S++I 
Sbjct: 70  --GALTPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLRQSSFEIP 122

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 61.9 bits (149), Expect = 3e-10
 Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 2/133 (1%)

Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
            +  +        VP +           +   T  A      E A  + +       T  
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATAS 72

Query: 444 V-ESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA-PEPVPSPAAPAPVETPSVPAE 501
              SPA++       A   +   P   A    AETP A  +P       A  E  +   E
Sbjct: 73  ETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDE 132

Query: 502 PTPTASPVQTSQP 514
             P A   +T + 
Sbjct: 133 SKPAAEANKTEKE 145

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.9 bits (123), Expect = 4e-07
 Identities = 12/120 (10%), Positives = 25/120 (20%), Gaps = 3/120 (2%)

Query: 399 VSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAA 458
           +  +                  + +     + +                  +  V   + 
Sbjct: 14  LENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASE 73

Query: 459 PVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAST 518
                    A+     A +   PE     A+    ETPS  A+P          +     
Sbjct: 74  TASPASNEAATTETAEAASAAKPEE---KASEVVAETPSAEAKPKSDKETEAKPEATNQG 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 57.8 bits (139), Expect = 4e-09
 Identities = 17/106 (16%), Positives = 24/106 (22%), Gaps = 5/106 (4%)

Query: 403 PAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD- 461
              S           P+   T   +   + +  PV  P      P A      P      
Sbjct: 9   HHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGD 68

Query: 462 ---TPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
                +    + P T +  P        P   AP   P       P
Sbjct: 69  SVLQRILRGPTGPGTTSLAPAVR-YGRQPGPEAPASAPPAAGRAVP 113

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 22/123 (17%), Positives = 27/123 (21%), Gaps = 6/123 (4%)

Query: 380 SSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPS 439
              P    +   ++      S   A   PPV  P    PAP   P   A   P      S
Sbjct: 13  GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVP---DPAPPPPPAPAAGNPPDTVTGDS 69

Query: 440 PTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
               +             +            P  PA  P A           PV  P   
Sbjct: 70  VLQRILRGPTGPG---TTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPV 126

Query: 500 AEP 502
              
Sbjct: 127 RVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 2/125 (1%)

Query: 354 SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP-VPAPSTPPVAT 412
                 S             ++    +S        P    +P P  P  PA   PP   
Sbjct: 6   HHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTV 65

Query: 413 PTETTPAPV-STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAP 471
             ++    +   PT     S   A         E+PA++ P    A P           P
Sbjct: 66  TGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDP 125

Query: 472 PTPAE 476
               E
Sbjct: 126 VRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 25/139 (17%), Positives = 33/139 (23%), Gaps = 5/139 (3%)

Query: 360 SKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPA 419
           S       S               +V            P   VP P+ PP   P    P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 420 PVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPG 479
             +   ++     +  P    TT   S A +        P      P A+    P     
Sbjct: 63  D-TVTGDSVLQRILRGPTGPGTT---SLAPAVRYGRQPGPEAPASAPPAAGRAVPGL-YH 117

Query: 480 APEPVPSPAAPAPVETPSV 498
            P P P P     V     
Sbjct: 118 HPVPEPDPVRVEEVSRRIK 136

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 7/104 (6%)

Query: 417 TPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAE 476
                      +      +   +        A   PV  P      P  P A  PP    
Sbjct: 8   HHHSSGLVPRGSHMVI-PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVT 66

Query: 477 TPGAPEPVPS------PAAPAPVETPSVPAEPTPTASPVQTSQP 514
                + +          + AP         P   AS    +  
Sbjct: 67  GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 1/85 (1%)

Query: 430 ASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAA 489
           +S       S   P        P  +  +     +  +      P   P  P    +   
Sbjct: 3   SSHHHHHHSSGLVP-RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 490 PAPVETPSVPAEPTPTASPVQTSQP 514
           P  V   SV        +   T+  
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSL 86

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens} Length = 109

 Score = 49.6 bits (118), Expect = 7e-08
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 230 AHPRAHSSPASLQQTYASAQQ-----QHQQHLKQRSYDITTVLDELGPLPPGWEQARTAE 284
           +  R  +S   L+      ++     +  QH +     I    D    LP GWE     +
Sbjct: 25  SAYRVFTSSTCLKHMILKVRRDARNFERYQHNRDLVNFINMFADTRLELPRGWEIKTDQQ 84

Query: 285 GQVYYL 290
           G+ +++
Sbjct: 85  GKSFFV 90

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 53.9 bits (129), Expect = 1e-07
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)

Query: 383  PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
            PT P   P  S    P SP  +P++P  +  + +      + + T+ +    +P  SPT+
Sbjct: 1558 PTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1616

Query: 443  PVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP 502
            P  SP  ++P  +P +P  +P +P  S P +P+ +P +P   P+  A +P      P  P
Sbjct: 1617 PSYSP--TSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSP 1673

Query: 503  T-----PTASPVQTSQPCAST 518
            +     P+ SP   S    S 
Sbjct: 1674 SYSPTSPSYSPTSPSYSPTSP 1694

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 51.2 bits (122), Expect = 8e-07
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 352  KISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
              S T     P +   S T+   +    S  PT P   P  S    P SP  +P++P  +
Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYS 1641

Query: 412  TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAA-----STPVEAPAAPVDTPVTP 466
              + +      + + T+ A    +P  SPT+P  SP +     ++P  +P +P  +P +P
Sbjct: 1642 PTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSP 1701

Query: 467  VASAPPTPAETPGAPEPVPSPAAPAPVETPS 497
              S P +P  +PG+P   P        E  +
Sbjct: 1702 SYS-PTSPGYSPGSPAYSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 26/187 (13%)

Query: 354  SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
            S    P+ P  +  S   S ++     + P+     P+ S      SP     +P   + 
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598

Query: 414  TETTPAPVSTPTETAAASPV---AAPVPSPTTPVESPA-----ASTPVEAPAAPVDTPVT 465
            + T+P+   T    +  SP     +P  SPT+P  SP       ++P  +P +P  +P +
Sbjct: 1599 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1658

Query: 466  PVASA------PPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT------------PTAS 507
            P  S       P +P+ +P +P   P+  + +P      P  P+            P  S
Sbjct: 1659 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYS 1718

Query: 508  PVQTSQP 514
            P Q  Q 
Sbjct: 1719 PKQDEQK 1725

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 38/174 (21%), Positives = 65/174 (37%), Gaps = 25/174 (14%)

Query: 358  EPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTP------PVA 411
              +                             P         SP  +P++P      P  
Sbjct: 1501 NDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG----VSSPGFSPTSPTYSPTSPAY 1556

Query: 412  TPTETTPAPVS---TPTETAAASPVAA------PVPSPTTPVESPAASTPVEAPAAPVDT 462
            +PT  + +P S   +PT  +  SP +       P  SPT+P  SP  ++P  +P +P  +
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYS 1613

Query: 463  PVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEP--TPTASPVQTSQP 514
            P +P  S P +P+ +P +P   P+  + +P      P  P  +PT+     + P
Sbjct: 1614 PTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1666

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 15/179 (8%)

Query: 351  KKISQTIEPSKPPAAE----PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPS 406
            + + + +   K    E       T   +     ++   V +    + +     +   A  
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG 1507

Query: 407  TPPVATPTETTPAPVSTPTETAAASP---VAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
                                 A  SP   V++P  SPT+P  SP  ++P  +P +P  +P
Sbjct: 1508 FTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP--TSPAYSPTSPSYSP 1565

Query: 464  VTPVASAPPTPAETPGAPE-----PVPSPAAPAPVETPSVPAEPTPTASPVQTSQPCAS 517
             +P  S P +P+ +P +P      P  SP +P+   T    +  +P+ SP   S    S
Sbjct: 1566 TSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 40/182 (21%), Positives = 72/182 (39%), Gaps = 12/182 (6%)

Query: 342  GKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSP 401
            G   + N    ++  ++        P   +  +                 A+        
Sbjct: 1469 GVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGE 1528

Query: 402  VPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVD 461
             P      V++P  +  +P  +PT + A SP  +P  SPT+P  SP +  P  +P +P  
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPT-SPAYSP-TSPSYSPTSPSYSPTS--PSYSPTSPSY 1584

Query: 462  TPVTPVASAPPTPAETPGAPEPVPSPAAPA-----PVETPSVPAEPTPTASPVQTSQPCA 516
            +P +P  S P +P+ +P +P    SP +P+     P  +P+ P+    + S   TS   +
Sbjct: 1585 SPTSPSYS-PTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1641

Query: 517  ST 518
             T
Sbjct: 1642 PT 1643

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 23/167 (13%)

Query: 359  PSKPPAAEPSQTTSESTEKKESSP---PTVPEVKPAASVEPVPVSPVPAPSTP------P 409
             + P  +  S   S S     SSP   PT P   P  S    P SP  +P++P      P
Sbjct: 1553 LTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSATSP 1611

Query: 410  VATPTETTPAPVS---TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
              +PT  + +P S   +PT  +  SP  +P  SPT+P  SP  ++P  +P +P  +P +P
Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSY-SP-TSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1667

Query: 467  VASAPPTPAETPGAPEPVP-----SPAAPAPVETPSVPAEPTPTASP 508
              S P +P+ +P +P   P     SP +P+   T    +  +P+ SP
Sbjct: 1668 SYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 383  PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTP-TETAAASPVAAPVPSPT 441
            PT P   P +     P SP  +P T P  +PT  + +P S   + T+ +    +P  SPT
Sbjct: 1629 PTSPSYSPTSPSYS-PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1686

Query: 442  TPVESPAA-----STPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETP 496
            +P  SP +     ++P  +P +P  +P +P  S P +P+ +P +P   P+  + +P    
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPS 1745

Query: 497  SVPAEPT 503
              P  P+
Sbjct: 1746 YSPTSPS 1752

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 33/164 (20%), Positives = 63/164 (38%), Gaps = 13/164 (7%)

Query: 367  PSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTE 426
            P         +       +    P   V+    +   + +  P    T  + +P S    
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS 1566

Query: 427  TAAASPVAAPVPSPTTPVESP-----AASTPVEAPAAPVDTPVTPVAS------APPTPA 475
            T+ A   ++P  SPT+P  SP     + ++P  +P +P  +  +P  S      +P +P+
Sbjct: 1567 TSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPS 1626

Query: 476  ETPGAPEPVPSPAAPAPVETPSVPAEPT--PTASPVQTSQPCAS 517
             +P +P   P+  + +P      P  P+  PT+     + P  S
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1670

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 45.1 bits (106), Expect = 5e-05
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 11/147 (7%)

Query: 354  SQTIEPSKPPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATP 413
            S +  P+ P  +  S + S ++     + P+     P+ S      SP     +P   + 
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676

Query: 414  TETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPT 473
            + T+P+   T    +  SP      SPT+P  SP  ++P  +P +P  +P +P  S P +
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSY----SPTSPSYSP--TSPSYSPTSPSYSPTSPSYS-PTS 1729

Query: 474  PAETPGAPEPVPSPAAPAPVETPSVPA 500
            P+ +P +P   P+    +P  +P+ P+
Sbjct: 1730 PSYSPTSPSYSPT----SPSYSPTSPS 1752

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A* Length = 50

 Score = 44.9 bits (107), Expect = 9e-07
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
           ++LGPLPPGWE+    +G+V++
Sbjct: 7   NDLGPLPPGWEERTHTDGRVFF 28

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens} Length = 39

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 269 ELGPLPPGWEQARTAEGQVYY 289
            +GPLPPGWE+     G++YY
Sbjct: 3   AMGPLPPGWERRVDNMGRIYY 23

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.6 bits (115), Expect = 1e-06
 Identities = 28/140 (20%), Positives = 38/140 (27%)

Query: 363 PAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVS 422
           P                + P +V  V PA    P  V P P P   P   P      P  
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKE 74

Query: 423 TPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPE 482
            P       P   P P P   V+           + P         +   +   T    +
Sbjct: 75  APVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSK 134

Query: 483 PVPSPAAPAPVETPSVPAEP 502
           PV S A+     + + P  P
Sbjct: 135 PVTSVASGPRALSRNQPQYP 154

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVP-VSPVPAPSTPPVATPTETTPAP 420
           P  A+P   T  +    E      P  +P    EP P   P P    P V    +  P P
Sbjct: 29  PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKP 88

Query: 421 VSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGA 480
              P +     P     P  + P      + P    ++      +   ++  +       
Sbjct: 89  KPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSR 148

Query: 481 PEPVPSPAA 489
            +P     A
Sbjct: 149 NQPQYPARA 157

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 17/141 (12%), Positives = 23/141 (16%)

Query: 374 STEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPV 433
           S+         +       SV  V   P PA               P +           
Sbjct: 2   SSHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEP 61

Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
                    P +          P               P     P    P       AP 
Sbjct: 62  EPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121

Query: 494 ETPSVPAEPTPTASPVQTSQP 514
              S  A    +      +  
Sbjct: 122 RLTSSTATAATSKPVTSVASG 142

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes} Length = 46

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
              GPLP GWEQA T EG++YY
Sbjct: 7   PASGPLPEGWEQAITPEGEIYY 28

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 37/215 (17%), Positives = 71/215 (33%), Gaps = 73/215 (33%)

Query: 9   WVTLATNDSYALGALVVANSL--KRVN----TVHDLAILITPGVT--LAMKNELLKVFNF 60
           W  +  +D   +   +   SL  K+      ++  + + +   +    A+   ++  +N 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 61  VKEVDVFDSRDETNLRLLSRPDLGITFTKI--HAWRLTQYSKC-----VFLD-------- 105
            K    FDS D     L    D    ++ I  H   +    +      VFLD        
Sbjct: 456 PKT---FDSDDLIPPYL----D-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507

Query: 106 -------------ADVL---------IVQNCDELFDREELSAAPDAGWPDCFNSGVFVFK 143
                         + L         I  N D  ++R  ++A  D           F+ K
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDN-DPKYERL-VNAILD-----------FLPK 554

Query: 144 PSESTYNA----LVEFALVN---GSFDDATRQLQK 171
             E+   +    L+  AL+      F++A +Q+Q+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 59/387 (15%), Positives = 111/387 (28%), Gaps = 121/387 (31%)

Query: 52  NELLKVF--NFVKEVDVFDSRDETNLRLLSRPDLGITFTKIHA--------WRLTQYSKC 101
            ++L VF   FV   D  D +D     +LS+ ++        A        W L    + 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 102 V---FLDADVLIVQNCDELFDR-EELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFAL 157
           +   F++ +VL   N   L    +     P +     +          +  YN    FA 
Sbjct: 78  MVQKFVE-EVL-RINYKFLMSPIKTEQRQP-SMMTRMYIEQR------DRLYNDNQVFAK 128

Query: 158 VNGSFDDATRQLQKPL-NMRNLP-----------KSFF-----QPPSTGSRSP-SVSSIS 199
            N S      +L++ L  +R              K++             +    +  ++
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 200 HSRENSADSAFGTSTITSTSSSVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQR 259
               NS ++      +      +       +        ++++    S Q + ++ LK +
Sbjct: 189 LKNCNSPETVL--EMLQKLLYQIDPNWTSRS-----DHSSNIKLRIHSIQAELRRLLKSK 241

Query: 260 SY-------D------------------ITT----VLDELGPLPPGWEQARTAEGQVYYL 290
            Y                          +TT    V D L           T     ++ 
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA------ATTTHISLDHHS 295

Query: 291 KGVLFMYTRLQAGLARAL--------AQVPIGTP--IS--AEQLAYEDHIHRQHWEEGHI 338
                    +++ L + L         +V    P  +S  AE +   D +          
Sbjct: 296 MT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI--RDGLAT-------- 343

Query: 339 DYLGKDSWDNIWK-----KISQTIEPS 360
                  WDN WK     K++  IE S
Sbjct: 344 -------WDN-WKHVNCDKLTTIIESS 362

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} Length = 611

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 19/144 (13%), Positives = 34/144 (23%), Gaps = 2/144 (1%)

Query: 324 YEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIEPSKPPAAEPSQTTSESTEKKE-SSP 382
             D +   H E    DYL  D ++ + +         +      + +   +         
Sbjct: 9   GADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQDYQGWDNLSLKLALFDNNFDLE 68

Query: 383 PTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTT 442
            T+ E+K     +  P  P+ A +     T        +S                S   
Sbjct: 69  STLAELKKTLKKKKTPKKPIAAANGSANVTQKL-ANISISQQRPNDRLPDWLDEEESEGE 127

Query: 443 PVESPAASTPVEAPAAPVDTPVTP 466
                A              P  P
Sbjct: 128 RNGEEANDEKTVQRYYKTTVPTKP 151

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens} Length = 38

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 271 GPLPPGWEQARTAEGQVYYL 290
           GPLP GWEQA T +G++YY+
Sbjct: 5   GPLPDGWEQAMTQDGEIYYI 24

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 57

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
           D LGPLP  WE A T  G+VY+
Sbjct: 10  DNLGPLPENWEMAYTENGEVYF 31

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A* Length = 49

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
            E G LP GWE      G+ ++
Sbjct: 8   IEQGFLPKGWEVRHAPNGRPFF 29

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
                LP GWE   T +G  Y+
Sbjct: 3   SGSSGLPEGWEMRFTVDGIPYF 24

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
               PLPPGWE+    EG+VYY
Sbjct: 4   GRSMPLPPGWERRTDVEGKVYY 25

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 2/95 (2%)

Query: 418 PAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAET 477
           PA  ++P     A+   A    P TP      + P   P         P    PP PA  
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPK--KNKKPKNPTPPRPAGD 59

Query: 478 PGAPEPVPSPAAPAPVETPSVPAEPTPTASPVQTS 512
                   +       +  +   +      P  T 
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 5e-05
 Identities = 18/93 (19%), Positives = 23/93 (24%), Gaps = 1/93 (1%)

Query: 389 KPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPA 448
            PAA   P       A         T   PA  + PT          P  +PT P  +  
Sbjct: 1   DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKP-KNPTPPRPAGD 59

Query: 449 ASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
            +T     A   +      A            P
Sbjct: 60  NATVAAGHATLREHLRDIKAENTDANFYVCPPP 92

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETA-AASPVAAPVPSPTTPVESPAASTPVEAP 456
           P +P  +P TP VA  T+      +TP   A  A+P   P P      ++P    P    
Sbjct: 2   PAAP-TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 457 AAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
           A       T         AE   A   V  P   A V
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATV 97

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 19/100 (19%), Positives = 25/100 (25%)

Query: 404 APSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTP 463
           AP++P        T A    P   A  +  AAP   P         +     PA    T 
Sbjct: 4   APTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATV 63

Query: 464 VTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
               A+      +             P P     V  E  
Sbjct: 64  AAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQP 103

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 16/68 (23%), Positives = 19/68 (27%)

Query: 447 PAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPTA 506
           PAA T    P     T       A P P     AP   P P      + P+ P      A
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 507 SPVQTSQP 514
           +       
Sbjct: 62  TVAAGHAT 69

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 5/81 (6%)

Query: 434 AAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPV 493
           AAP  SP TP  + A       PA    TP  P   A PT    P   +   +P  P P 
Sbjct: 3   AAP-TSPGTPGVAAATQAANGGPA----TPAPPALGAAPTGDPKPKKNKKPKNPTPPRPA 57

Query: 494 ETPSVPAEPTPTASPVQTSQP 514
              +  A    T         
Sbjct: 58  GDNATVAAGHATLREHLRDIK 78

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A* Length = 46

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 267 LDELGPLPPGWEQARTAEGQVYYL 290
           + +  PLP GWE A+T+ GQ Y+ 
Sbjct: 3   IPDDVPLPAGWEMAKTSSGQRYFK 26

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
                LP GWE+A TA+G  Y+
Sbjct: 3   SGSSGLPYGWEEAYTADGIKYF 24

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A Length = 42

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 270 LGPLPPGWEQARTAEGQVYYL 290
            GPLPPGWE   TA G+VY++
Sbjct: 5   SGPLPPGWEIRNTATGRVYFV 25

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster} Length = 46

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
            E  PLPP W       G+ ++
Sbjct: 6   GEEEPLPPRWSMQVAPNGRTFF 27

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1 Length = 88

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 267 LDELGPLPPGWEQARTAEGQVYYL 290
           +D LGPLP GWE+   ++ +VY++
Sbjct: 7   MDALGPLPDGWEKKIQSDNRVYFV 30

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A* Length = 36

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 271 GPLPPGWEQARTAEGQVYY 289
             LP GWE+ + A+G+ YY
Sbjct: 3   PGLPSGWEERKDAKGRTYY 21

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 271 GPLPPGWEQARTAEGQVYY 289
            PLPPGWE+     G+ YY
Sbjct: 3   PPLPPGWEEKVDNLGRTYY 21

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A Length = 53

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 267 LDELGPLPPGWEQARTAEGQVYY 289
           L   GPLPPGWE   TA G+ ++
Sbjct: 13  LINEGPLPPGWEIRYTAAGERFF 35

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 45.3 bits (105), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 23/98 (23%)

Query: 407 TPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTP 466
           + P    T    +  +    +               P    + +  + A   P  T   P
Sbjct: 392 SGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKP 451

Query: 467 VASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTP 504
                PT    P      P   AP        P  PT 
Sbjct: 452 TPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTR 489

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 43.0 bits (99), Expect = 2e-04
 Identities = 15/100 (15%), Positives = 21/100 (21%)

Query: 406 STPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVT 465
               V     +    +                  P            V  P    + P  
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453

Query: 466 PVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPTPT 505
           PV    PT           P+P AP   + P+ P      
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHH 493

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1 Length = 49

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
            E  PLPPGW    T  G+ YY
Sbjct: 7   GEDLPLPPGWSVDWTMRGRKYY 28

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 15/109 (13%), Positives = 26/109 (23%)

Query: 391 AASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAAS 450
              V      P P  ST    + +      +   T+      V A   +    V + +  
Sbjct: 328 REVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQVHAEKLTANEIVTALSVP 387

Query: 451 TPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVP 499
                  A      T ++    T      A             E+  +P
Sbjct: 388 LVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSESVELP 436

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 13/105 (12%), Positives = 22/105 (20%), Gaps = 3/105 (2%)

Query: 379 ESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVP 438
           E         +P  S    P             T             E   A+ +   + 
Sbjct: 329 EVVAQDTGVPRPGLSTIFSPSRSTFGVDLLVAHTDVYLDGQV---HAEKLTANEIVTALS 385

Query: 439 SPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEP 483
            P       AAS       +     +  + +A     +  G    
Sbjct: 386 VPLVDPTDVAASVLQATVLSQPVQTLDSLRAARHGALDADGVDFS 430

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 24/131 (18%), Positives = 30/131 (22%), Gaps = 2/131 (1%)

Query: 384 TVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTP 443
              E  P        V    A   P +                  A + +A PV     P
Sbjct: 80  MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMP--QAPAGLAGPVRGVGGP 137

Query: 444 VESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVETPSVPAEPT 503
            +           AA        +A AP       G P P     AP P      P    
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 504 PTASPVQTSQP 514
           P   P+     
Sbjct: 198 PMGPPMGIPPG 208

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 28/140 (20%), Positives = 36/140 (25%), Gaps = 2/140 (1%)

Query: 375 TEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVA 434
           T +      T     P A     P     A    P   P    PA ++ P          
Sbjct: 81  TVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQ 140

Query: 435 APVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAPEPVPSPAAPAPVE 494
              P     V + AA+       AP   P       PP     P      P P    P+ 
Sbjct: 141 VMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMG 200

Query: 495 TPSVPAEPTPTASPVQTSQP 514
            P     P    +P+    P
Sbjct: 201 PP--MGIPPGRGTPMGMPPP 218

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 43

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
                LPPGWEQ     G+VYY
Sbjct: 3   SGSSGLPPGWEQRVDQHGRVYY 24

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus} Length = 41

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 271 GPLPPGWEQARTAEGQVYY 289
             LPPGWE      G+ ++
Sbjct: 7   SFLPPGWEMRIAPNGRPFF 25

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 268 DELGPLPPGWEQARTAEGQVYYL 290
                LP G+EQ  T +GQVY+L
Sbjct: 5   GSPPDLPEGYEQRTTQQGQVYFL 27

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1 Length = 37

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 271 GPLPPGWEQARTAEGQVYY 289
             LPPGW++ +T  G+ YY
Sbjct: 2   MGLPPGWDEYKTHNGKTYY 20

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens} Length = 49

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 264 TTVLDELGPLPPGWEQARTAEGQVYY 289
           ++ LD    LP GWE+       +YY
Sbjct: 5   SSGLDSELELPAGWEKIEDPVYGIYY 30

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 271 GPLPPGWEQARTAEGQVYY 289
             LPPGW+   + +G+ YY
Sbjct: 6   SGLPPGWQSYLSPQGRRYY 24

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 60

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 264 TTVLDELGPLPPGWEQARTAEGQVYYL 290
           ++ LD    LP GWE+       +YY+
Sbjct: 5   SSGLDSELELPAGWEKIEDPVYGIYYV 31

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 11/121 (9%), Positives = 20/121 (16%), Gaps = 4/121 (3%)

Query: 398 PVSPVPAPSTPPVATPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPA 457
           P + +                 P        +   +  P       +      TP +   
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 458 APVDTPVTPVASAPPTPAETPGAPE----PVPSPAAPAPVETPSVPAEPTPTASPVQTSQ 513
                  T   +           P     P        P++    P        P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 514 P 514
            
Sbjct: 130 Q 130

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 25/157 (15%), Positives = 38/157 (24%), Gaps = 9/157 (5%)

Query: 362 PPAAEPSQTTSESTEKKESSPPTVPEVKPAASVEPVPVSPVPAPSTPPVATPTETTPAPV 421
               +  Q  +   +  +  PP  P    AA +    +   P  + P +      TPA  
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDP---AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 422 STPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDTPVTPVASAPPTPAETPGAP 481
               +   A+     +     P+  P A      P  PV           P  A   G P
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQ---PQVPVQMGTPLQQQQQPMAAPAYGQP 124

Query: 482 EPVPSPAA---PAPVETPSVPAEPTPTASPVQTSQPC 515
                              +   P P         P 
Sbjct: 125 SAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPL 161

>3k8t_A Ribonucleoside-diphosphate reductase large chain; eukaryotic ribonucleotide reductase, nucleotide analogs, all enzyme ATP-binding; HET: DGT 2A5; 2.10A {Saccharomyces cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A* 1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A* 2cvx_A* 3paw_A 3s87_A* 3s8b_A* 3s8c_A* 3s8a_A* 3tb9_A* 3tba_A* Length = 888

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 363 PAAEPSQTTSESTEKKESS-----------PPTVPEVKPAASVEPVPVSPVPAPSTPPVA 411
            A+   Q T +     +++           P  +P     A+ + VP +     + P + 
Sbjct: 747 AASAAIQFTIDQKIADQATENVADISNLKRPSYMPSSASYAASDFVPAAVTANATIPSLD 806

Query: 412 TPTETTPAPVSTPTETAAASPVAAPVPSPTTPVESPAASTPVEAPAAPVDT 462
           + +E +      PT + + +   A +    + VE P    P +        
Sbjct: 807 SSSEASREASPAPTGSHSLTKGMAELNVQESKVEVPEVPAPTKNEEKAAPI 857

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens} Length = 54

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 271 GPLPPGWEQARTAEGQVYYL 290
           G LP GWEQ     GQV+++
Sbjct: 10  GDLPYGWEQETDENGQVFFV 29

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
1ll2_A	333	Glycogenin-1; protein-substrate complex, beta-alph	100.0
3u2u_A	263	Glycogenin-1, GN-1, GN1; structural genomics, stru	100.0
3tzt_A	276	Glycosyl transferase family 8; structural genomics	99.97
1g9r_A	311	Glycosyl transferase; alpha-beta structure; HET: U	99.96
3kys_B	125	YAP65, 65 kDa YES-associated protein; immunoglobul	97.26
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	95.51
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	95.31
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	94.73
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	94.69
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	94.53
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	94.44
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	94.38
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	94.29
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	94.26
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	94.23
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	94.21
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	93.89
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	93.88
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	93.77
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	93.7
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	93.69
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	93.62
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	93.56
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	93.0
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	92.97
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	92.95
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	92.74
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	92.37
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	92.05
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	90.21
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	90.08
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	88.81
1ymz_A	43	CC45; artificial protein, computational design, un	88.55
3bcv_A	240	Putative glycosyltransferase protein; protein stru	86.16
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	85.94
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	85.49
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	83.36
1qg8_A	255	Protein (spore coat polysaccharide biosynthesis P	82.7
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	80.98
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	80.67

>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*

Probab=100.00  E-value=1.1e-65  Score=530.63  Aligned_cols=319  Identities=39%  Similarity=0.628  Sum_probs=208.4

Q ss_pred             CCCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCch
Q psy7288           4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDL   83 (518)
Q Consensus         4 ~~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~   83 (518)
                      ++++||||+++|++|+.|++|+++||++++++++++||++++++++.++.|++.++.++.|+.++..+..++..+.++++
T Consensus         1 Ms~~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~   80 (333)
T 1ll2_A            1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (333)
T ss_dssp             CCSEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CCceEEEEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccch
Confidence            47899999999999999999999999999999999999999999999999999999999988877655455554556777


Q ss_pred             hhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCCCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCCCC
Q psy7288          84 GITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD  163 (518)
Q Consensus        84 ~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d  163 (518)
                      ..+|+||++|.|++|+||||||+|+||++|||+||+++.++|++|.||++|||||||||+|+..++++|++++.++++++
T Consensus        81 ~~t~~Kl~i~~l~~ydrvlYLDaD~lv~~di~eLf~~~~~aAv~d~~~~~~fNsGvmlin~~~~~~~~l~~~~~~~~~~~  160 (333)
T 1ll2_A           81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (333)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHhHhcCCCeEEEEeCCEEeccCHHHHhCCCceeEEecCCCCcceeeeEEEEeCCHHHHHHHHHHHHhcCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             cCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccc----cccCCCceEEcccCCCCCC
Q psy7288         164 DATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS----SVSGGGLQIAHPRAHSSPA  239 (518)
Q Consensus       164 ~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y----~~~~~~~kIiHf~g~~KPW  239 (518)
                      ++|||+   |      |.+|.+|...++.      ..|     |++||++....|.+    ..+..+++||||+|..|||
T Consensus       161 ~~DQ~~---L------N~~f~~~~~~~~~------~~L-----p~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW  220 (333)
T 1ll2_A          161 GGDQGL---L------NTFFNSWATTDIR------KHL-----PFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPW  220 (333)
T ss_dssp             SSHHHH---H------HHHTTTTTTSCGG------GBC-----CGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGG
T ss_pred             CCCHHH---H------HHHHHhhcccCcc------ccC-----CcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCC
Confidence            999999   9      9999988533332      567     99999997654544    2346789999999999999


Q ss_pred             Cccccc----h--hhhhhh--hhHHHhhhhhhhcccc--cCCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhc
Q psy7288         240 SLQQTY----A--SAQQQH--QQHLKQRSYDITTVLD--ELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALA  309 (518)
Q Consensus       240 ~~~~~~----~--~~~~~~--~~~~~~~WWdi~~~l~--e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~s  309 (518)
                      ......    .  ..+..+  |..++++||++|+..-  -+.+.                +............+++++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~WW~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~  284 (333)
T 1ll2_A          221 NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFTTSVVPLLQQF----------------GLVQDTCSYQHVEDVSGAVS  284 (333)
T ss_dssp             GSCEETTTTEEC--------CCHHHHHHHHHHHHHTHHHHHTC-------------------------------------
T ss_pred             CCCCCCCccccccccccccccHHHHHHHHHHHHHhhcccccchh----------------hccCCCCCccchhhhhhhhh
Confidence            875221    1  011111  4689999999995311  00000                00000011123466899999


Q ss_pred             cccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHHHHHhhhccC
Q psy7288         310 QVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNIWKKISQTIE  358 (518)
Q Consensus       310 q~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nIqkKld~~L~  358 (518)
                      |+++++..++++...++++||++||+|||||||+|||||||||||+||+
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~we~g~~dy~g~d~f~~i~~kl~~~l~  333 (333)
T 1ll2_A          285 HLSLGETPATTQPFVSSEERKERWEQGQADYMGADSFDNIKKKLDTYLQ  333 (333)
T ss_dssp             -------------------------------------------------
T ss_pred             ccccccccCccCCCCCcHHHHHHHhccCCccccchhHHHHHHHHHHhhC
Confidence            9999975555555456777799999999999999999999999999995

>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A

Probab=100.00  E-value=2e-51  Score=411.56  Aligned_cols=242  Identities=45%  Similarity=0.715  Sum_probs=213.6

Q ss_pred             CCCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCch
Q psy7288           4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDL   83 (518)
Q Consensus         4 ~~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~   83 (518)
                      ++++|||||++|++|++||+||++||++++++++++||++++++++.++.|++.|+.++.|+.++..+..++..+.++++
T Consensus         2 ~~~~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~   81 (263)
T 3u2u_A            2 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL   81 (263)
T ss_dssp             TTTEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG
T ss_pred             CcceEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch
Confidence            57999999999999999999999999999999999999999999999999999999999999888766666666778889


Q ss_pred             hhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCCCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCCCC
Q psy7288          84 GITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD  163 (518)
Q Consensus        84 ~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d  163 (518)
                      ..+|+||++|+|++|+||||||+|+||++|||+||+++.++|++|.||++|||||||||+|+..++++|++++.+.++++
T Consensus        82 ~~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~  161 (263)
T 3u2u_A           82 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFD  161 (263)
T ss_dssp             GGGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCTT
T ss_pred             hHHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888999


Q ss_pred             cCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccc----cccCCCceEEcccCCCCCC
Q psy7288         164 DATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS----SVSGGGLQIAHPRAHSSPA  239 (518)
Q Consensus       164 ~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y----~~~~~~~kIiHf~g~~KPW  239 (518)
                      ++|||+   |      |.+|.+|...+.      ++.|     |++||++....|.|    ..+..+++||||+|..|||
T Consensus       162 ~~DQd~---L------N~~f~~w~~~~~------~~~L-----p~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW  221 (263)
T 3u2u_A          162 GGDQGI---L------NTFFSSWATTDI------RKHL-----PFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPW  221 (263)
T ss_dssp             SSHHHH---H------HHHTTTTTTSCG------GGBC-----CGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGG
T ss_pred             cccHHH---H------HHHhccccccCe------eEeC-----CcccccccchhccccHHHHhhcCCeEEEEECCCCcCC
Confidence            999999   9      999999864333      2678     99999998665554    2346889999999999999


Q ss_pred             Cccc----cchhhh----hhhhhHHHhhhhhhhc
Q psy7288         240 SLQQ----TYASAQ----QQHQQHLKQRSYDITT  265 (518)
Q Consensus       240 ~~~~----~~~~~~----~~~~~~~~~~WWdi~~  265 (518)
                      +...    +.....    ...|.++.++||++|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~~~~  255 (263)
T 3u2u_A          222 NYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIFT  255 (263)
T ss_dssp             GSEEETTTTEEECCSSCGGGSSTHHHHHHHHHHH
T ss_pred             CCCCCCCCCcccccCCCcchhHHHHHHHHHHHHH
Confidence            8732    211111    1235899999999993

>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0

Probab=99.97  E-value=1.3e-31  Score=269.48  Aligned_cols=220  Identities=14%  Similarity=0.171  Sum_probs=154.4

Q ss_pred             EEEecChhhHHHHHHHHHHHHhhCCCCeEEE-EECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCchh
Q psy7288          10 VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDLG   84 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvv-Lvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~~   84 (518)
                      |++++|++|+.|+.|+++||++|+++.++.+ +++++++++.++.|+..    +.++..+.+ +......+....+ ...
T Consensus         8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~-~s~   85 (276)
T 3tzt_A            8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRA-TDDLFSFAKVTDR-YPK   85 (276)
T ss_dssp             EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEEC-C--------------CH
T ss_pred             EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEe-CHHHHhcCccccc-cCH
Confidence            4488999999999999999999998655543 45679999998888764    455554443 2111111111111 125


Q ss_pred             hhhHhHhhhhcc--CcCeEEEecCCeEEcCCChhhhCCC----CcccccCCCCC---------------CCCCceEEEEe
Q psy7288          85 ITFTKIHAWRLT--QYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAGWP---------------DCFNSGVFVFK  143 (518)
Q Consensus        85 ~tftKL~~w~L~--eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~gwp---------------~~FNSGVmVi~  143 (518)
                      .+|+||+++.+.  +|+||||||+|+||++||++||+++    .++|++|.++.               .|||||||||+
T Consensus        86 ~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~lin  165 (276)
T 3tzt_A           86 EMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLIN  165 (276)
T ss_dssp             HHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEEE
T ss_pred             HHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEEE
Confidence            789999999985  6999999999999999999999986    48888886532               79999999999


Q ss_pred             CChHHH----HHHHHHHHhcC-CCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCC-ccccccccc
Q psy7288         144 PSESTY----NALVEFALVNG-SFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADS-AFGTSTITS  217 (518)
Q Consensus       144 Ps~~~~----~~Ll~~~~~~~-s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~-~YN~~~~~~  217 (518)
                      ++.++.    +++++++.+.. ++.++|||+   |      |.+|.+..           +.|     |. +||++....
T Consensus       166 l~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~---L------N~~f~~~~-----------~~L-----p~~~wN~~~~~~  220 (276)
T 3tzt_A          166 LKRAREEIDPDEIFSFVEDNHMNLLLPDQDI---L------NAMYGDRI-----------YPL-----DDLIYNYDARNY  220 (276)
T ss_dssp             HHHHHHHCCHHHHHHHHHHC--------CHH---H------HHHHGGGE-----------EEE-----EHHHHSEETTCH
T ss_pred             HHHHHhhhHHHHHHHHHHhccccccCCChhH---H------HHHHhCCE-----------EEC-----Cchheeeecccc
Confidence            998764    55666666653 677999999   9      99998742           688     98 899987432


Q ss_pred             ccc----------cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhhc
Q psy7288         218 TSS----------SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       218 y~y----------~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~  265 (518)
                      ..|          ....++++||||+|..|||+....         ..+...||.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~---------~~~~~~w~~Y~~  269 (276)
T 3tzt_A          221 SSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHR---------NKFTSLYKHYMS  269 (276)
T ss_dssp             HHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCC---------STTHHHHHHHHH
T ss_pred             hhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCC---------CchHHHHHHHHH
Confidence            111          112457899999999999987532         468889998763

>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*

Probab=99.96  E-value=1e-29  Score=259.02  Aligned_cols=208  Identities=19%  Similarity=0.222  Sum_probs=152.5

Q ss_pred             EEEecChhhHHHHHHHHHHH-HhhCC-CCeEEEEECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCch
Q psy7288          10 VTLATNDSYALGALVVANSL-KRVNT-VHDLAILITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDL   83 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SL-r~~~s-~~~lvvLvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~   83 (518)
                      |++++|++|+.|++|+++|| ++++. ...++|+ +++++++.++.|+..    +..+..+.+ +.....++....+-..
T Consensus         3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il-~~~ls~~~~~~L~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~s   80 (311)
T 1g9r_A            3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVL-DAGISEANRAAVAANLRGGGGNIRFIDV-NPEDFAGFPLNIRHIS   80 (311)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEE-ESSCCHHHHHHHHHHSGGGTTTEEEEEC-CGGGGTTSCCCCTTCC
T ss_pred             EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEE-ECCCCHHHHHHHHHHHHHcCCEEEEEEc-CHHHHhcCccccccCC
Confidence            66889999999999999999 65542 3444444 678999999988876    555554432 2211111111011112


Q ss_pred             hhhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccCCC------------C---CCCCCceEEEEe
Q psy7288          84 GITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDAG------------W---PDCFNSGVFVFK  143 (518)
Q Consensus        84 ~~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~g------------w---p~~FNSGVmVi~  143 (518)
                      ..+|+||+++.+ .+|+||||||+|+||++||++||+++    .++|++|.+            +   ..|||||||||+
T Consensus        81 ~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~~~~~~~~yfNsGv~lin  160 (311)
T 1g9r_A           81 ITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLIN  160 (311)
T ss_dssp             GGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhcCCCCCCceEeeeeeeee
Confidence            579999999995 68999999999999999999999985    477777632            1   259999999999


Q ss_pred             CChHH----HHHHHHHHHhc-CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccc
Q psy7288         144 PSEST----YNALVEFALVN-GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITST  218 (518)
Q Consensus       144 Ps~~~----~~~Ll~~~~~~-~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y  218 (518)
                      ++.++    ++++++.+.+. .++.++|||+   |      |.+|.+..           ..|     |..||++....+
T Consensus       161 l~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---l------N~~f~~~~-----------~~L-----p~~wN~~~~~~~  215 (311)
T 1g9r_A          161 LKKWRRHDIFKMSSEWVEQYKDVMQYQDQDI---L------NGLFKGGV-----------CYA-----NSRFNFMPTNYA  215 (311)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHTTTCSSHHHHH---H------HHHHTTSE-----------EEE-----CGGGSBCHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHhccCcCccCCcCH---H------HHHHcCCE-----------EEc-----ChhhccCcchhh
Confidence            98754    57777777664 4678999999   9      99998742           678     999999864321


Q ss_pred             cc----------------cccCCCceEEcccCCCCCCCcccc
Q psy7288         219 SS----------------SVSGGGLQIAHPRAHSSPASLQQT  244 (518)
Q Consensus       219 ~y----------------~~~~~~~kIiHf~g~~KPW~~~~~  244 (518)
                      .+                .....+++||||+|..|||.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~  257 (311)
T 1g9r_A          216 FMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCT  257 (311)
T ss_dssp             TCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCC
T ss_pred             HHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCC
Confidence            11                123468899999999999987543

>3kys_B YAP65, 65 kDa YES-associated protein; immunoglobulin-like fold, activator, disease mutation, DNA- binding, nucleus, phosphoprotein, transcription; 2.80A {Homo sapiens} PDB: 3jua_B

Probab=97.26  E-value=0.0002  Score=62.40  Aligned_cols=93  Identities=41%  Similarity=0.609  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHhcCCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccccccCCCc
Q psy7288         148 TYNALVEFALVNGSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSSSVSGGGL  227 (518)
Q Consensus       148 ~~~~Ll~~~~~~~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y~~~~~~~  227 (518)
                      ..+.|++.+....   ++....++|+|||+||++||+....+         .|-|+++.+-.             +....
T Consensus        18 ~LeaLFn~vmnP~---~a~~P~svPmrlRkLP~SFFkpP~p~---------SHSRq~StDsg-------------~~g~l   72 (125)
T 3kys_B           18 DLEALFNAVMNPK---TANVPQTVPMRLRKLPDSFFKPPEPK---------SHSRQASTDAG-------------TAGAL   72 (125)
T ss_dssp             HHHHHHHHHHSGG---GCCCCCCCCGGGSSCCGGGTSCCC----------------------------------------
T ss_pred             HHHHHHHHhhCCc---ccCCCCccccccccCcHhhcCCCCCC---------CcccccccccC-------------cCCCC
Confidence            3444555443322   33446688999999999999976421         34455544421             22345


Q ss_pred             eEEcccCCCCCCCccccchhhh-------------hhhhhHHHhhhhhhhc
Q psy7288         228 QIAHPRAHSSPASLQQTYASAQ-------------QQHQQHLKQRSYDITT  265 (518)
Q Consensus       228 kIiHf~g~~KPW~~~~~~~~~~-------------~~~~~~~~~~WWdi~~  265 (518)
                      .+.|.++++.|.+++.++.+.+             ...++|++|.+|||-+
T Consensus        73 ~~~H~RAhSSPASLq~~~~s~g~l~~~g~~~~~~~~~~~~hlrq~s~~i~d  123 (125)
T 3kys_B           73 TPQHVRAHSSPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLRQSSFEIPD  123 (125)
T ss_dssp             ---------------------------------------------------
T ss_pred             CcccccccCCcccccccccccccccccccccCCCCCccchhhhcccccCCC
Confidence            6899999999999988875431             2458899999999874

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=95.51  E-value=0.0027  Score=52.93  Aligned_cols=82  Identities=22%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             CCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhHHH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWDNI  349 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~nI  349 (518)
                      ...||+||+...+++|..||.+|.++..+ +......    ..+..     ....+...+..+||+. .|-.|+-.|-|+
T Consensus         7 ~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~-W~~P~~~----~~~~~-----~~~~~~~~LP~gWe~~-~~~~G~~Yy~n~   75 (90)
T 2kxq_A            7 PPDLPEGYEQRTTQQGQVYFLHTQTGVST-WHDPRVP----RDLSN-----INCEELGPLPPGWEIR-NTATGRVYFVDH   75 (90)
T ss_dssp             CCSCCSSCEEEEETTTEEEEEETTTTEEE-SSCSSSC----SSSCS-----CCGGGTCCCCSSCCEE-ECTTSCEEEEET
T ss_pred             CCCCCCCcEEEECCCCCEEEEECCCCeEe-eeccccc----ccccc-----cCcccccccCCCceEE-ECCCCCEEEEEC
Confidence            45799999999999999999999988654 2211100    00000     0012223568899997 356788889999


Q ss_pred             HHHhhhccCCCCC
Q psy7288         350 WKKISQTIEPSKP  362 (518)
Q Consensus       350 qkKld~~L~~~~~  362 (518)
                      ..|..+|..++..
T Consensus        76 ~t~~t~w~~Pr~~   88 (90)
T 2kxq_A           76 NNRTTQFTDPRLS   88 (90)
T ss_dssp             TTTEEESSCTTTS
T ss_pred             CCCcEecCCCCcC
Confidence            9999999888763

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=95.31  E-value=0.0014  Score=54.44  Aligned_cols=80  Identities=19%  Similarity=0.312  Sum_probs=55.2

Q ss_pred             ccCCCCCCCCccccccccceeeecccchhhHHHhhhHhhhhccccCCCCCCCcccccchhhcccccccCCCCCcCchhhH
Q psy7288         268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYTRLQAGLARALAQVPIGTPISAEQLAYEDHIHRQHWEEGHIDYLGKDSWD  347 (518)
Q Consensus       268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~~~~~~~a~~~sq~~i~~~~~~~~~~~ee~~rr~~WE~G~iDYmG~dsf~  347 (518)
                      +...+||+||+...+++|.+||.+|.++..+ +.....         .. .. .....+..+..+||+. .|-.|+-.|-
T Consensus         8 ~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~-W~~P~~---------~~-~~-~~~~~~~~LP~gWe~~-~~~~G~~Yy~   74 (88)
T 1tk7_A            8 DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQ-WEDPRT---------QG-QE-VSLINEGPLPPGWEIR-YTAAGERFFV   74 (88)
T ss_dssp             STTSSSSSSCCEEEETTTEEEEEETTTTEEE-EESCCC---------TT-TC-CHHHHSCSSCSSCEEE-EETTTEEEEE
T ss_pred             CccCCCCCCcEEEECCCCCEEEEECCCCCeE-eecccc---------cc-cc-cccccccccCCceEEE-ECCCCCEEEE
Confidence            3467899999999999999999999888654 211100         00 00 0001233458899987 4567888888


Q ss_pred             HHHHHhhhccCCC
Q psy7288         348 NIWKKISQTIEPS  360 (518)
Q Consensus       348 nIqkKld~~L~~~  360 (518)
                      |+..|..+|.+++
T Consensus        75 nh~t~~ttw~~Pr   87 (88)
T 1tk7_A           75 DHNTRRTTFEDPR   87 (88)
T ss_dssp             ETTTTEEESSSSC
T ss_pred             ECCCCcEeCCCCC
Confidence            9999988887765

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=94.73  E-value=0.0093  Score=42.28  Aligned_cols=30  Identities=37%  Similarity=0.615  Sum_probs=25.7

Q ss_pred             cCCCCCCCCccccccccceeeecccchhhH
Q psy7288         269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ...+||+||++..+.+|..||.+|.++..+
T Consensus         4 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~tt   33 (40)
T 2ysg_A            4 GSSGLPYGWEEAYTADGIKYFINHVTQTTS   33 (40)
T ss_dssp             SSSCCCTTEEEEECSSSCEEEEESSSCCEE
T ss_pred             CcCCCCCCcEEEEcCCCCEEEEECCCCcCc
Confidence            346899999999999999999999887543

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=94.69  E-value=0.0089  Score=41.90  Aligned_cols=29  Identities=45%  Similarity=0.865  Sum_probs=24.7

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||++..+.+|..||.||.++..+
T Consensus         4 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~tt   32 (38)
T 2law_A            4 EGPLPDGWEQAMTQDGEIYYINHKNKTTS   32 (38)
T ss_dssp             -CCCSSSCCEEEETTTEEEEEETTTTEEE
T ss_pred             cCCCCCCcEEEECCCCCEEEEECCCCCEe
Confidence            45899999999999999999999877543

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=94.53  E-value=0.01  Score=42.57  Aligned_cols=29  Identities=45%  Similarity=0.835  Sum_probs=25.4

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||++..+.+|..||.+|.++..+
T Consensus         5 ~~~LP~GWe~~~~~~G~~Yy~nh~t~~tt   33 (42)
T 2djy_A            5 SGPLPPGWEIRNTATGRVYFVDHNNRTTQ   33 (42)
T ss_dssp             CSCCCSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             cCCCCcCcEEEECCCCCEEEEECCCCCEe
Confidence            46899999999999999999999887544

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=94.44  E-value=0.014  Score=41.02  Aligned_cols=28  Identities=39%  Similarity=0.928  Sum_probs=24.8

Q ss_pred             CCCCCCCCccccccccceeeecccchhh
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      ..+||+||+...+.+|..||.||.++..
T Consensus         4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t   31 (39)
T 2kyk_A            4 MGPLPPGWERRVDNMGRIYYVDHFTRTT   31 (39)
T ss_dssp             SCCCCSSCEEEECTTSCEEEECSSSCCE
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCE
Confidence            5689999999999999999999987754

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=94.38  E-value=0.012  Score=43.82  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      .+...+||+||++..+..|..||+||.++..+
T Consensus         8 ~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~   39 (49)
T 2zaj_A            8 LDSELELPAGWEKIEDPVYGIYYVDHINRKTQ   39 (49)
T ss_dssp             CCCSSCCCTTEEEEEETTTEEEEEETTTTEEE
T ss_pred             cCCCCCCCcCceEEEcCCCCEEEEeCCCCCEe
Confidence            44567899999999999999999999887544

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=94.29  E-value=0.015  Score=42.63  Aligned_cols=30  Identities=47%  Similarity=0.854  Sum_probs=25.9

Q ss_pred             cCCCCCCCCccccccccceeeecccchhhH
Q psy7288         269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ...+||+||++..+.+|..||.+|.++..+
T Consensus         8 ~~~~LP~gWe~~~~~~G~~Yyinh~t~~Tt   37 (46)
T 2l4j_A            8 ASGPLPEGWEQAITPEGEIYYINHKNKTTS   37 (46)
T ss_dssp             TTSCCCTTCEEEECTTSCEEEEETTTTEEE
T ss_pred             cCCCCCcCceeEECCCCCEEEEECCCCCEe
Confidence            456899999999999999999999877543

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.26  E-value=0.016  Score=44.90  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=27.2

Q ss_pred             ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +....||+|||...+..|..||+||.++..+
T Consensus         9 d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~   39 (60)
T 2yse_A            9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQ   39 (60)
T ss_dssp             CCCSSCCSSEEEEECSSSCEEEEETTTTEEE
T ss_pred             CCCCCCCCCcEEEECCCCCEEEEeCCCCCee
Confidence            4567899999999999999999999998654

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=94.23  E-value=0.013  Score=41.59  Aligned_cols=29  Identities=31%  Similarity=0.481  Sum_probs=25.2

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||++..+.+|..||.||.++..+
T Consensus         5 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~tt   33 (40)
T 2ysf_A            5 SSGLPEGWEMRFTVDGIPYFVDHNRRTTT   33 (40)
T ss_dssp             CCCCCSSEEEEECTTCCEEEEETTTCCEE
T ss_pred             cCCCCcCcEEEEcCCCCEEEEECCCCcEe
Confidence            46899999999999999999999877543

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=94.21  E-value=0.014  Score=44.11  Aligned_cols=31  Identities=39%  Similarity=0.670  Sum_probs=26.5

Q ss_pred             ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      .+..+||+|||+..+.+|..||++|.++..+
T Consensus        14 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~Tt   44 (53)
T 2jmf_A           14 INEGPLPPGWEIRYTAAGERFFVDHNTRRTT   44 (53)
T ss_dssp             TSCSCCCTTEEEEECTTSCEEEEETTTCCEE
T ss_pred             CcCCCCCcCcEEEEcCCCCEEEEeCCCCcEe
Confidence            3457899999999999999999999887544

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=93.89  E-value=0.017  Score=43.09  Aligned_cols=30  Identities=37%  Similarity=0.958  Sum_probs=26.2

Q ss_pred             cCCCCCCCCccccccccceeeecccchhhH
Q psy7288         269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +..+||+||++..+.+|..||.||.++..+
T Consensus         8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~   37 (50)
T 1i5h_W            8 DLGPLPPGWEERTHTDGRVFFINHNIKKTQ   37 (50)
T ss_dssp             CCSSCSTTEEEEECTTSCEEEEETTTTEEE
T ss_pred             cCCCCCcCcEEEEcCCCCEEEEECCCCCEE
Confidence            457899999999999999999999887644

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=93.88  E-value=0.017  Score=42.25  Aligned_cols=29  Identities=24%  Similarity=0.565  Sum_probs=25.4

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||++..+.+|..||.||.++..+
T Consensus         8 ~~~LP~gWe~~~~~~Gr~Yyinh~t~~Tt   36 (46)
T 2ez5_W            8 EEPLPPRWSMQVAPNGRTFFIDHASRRTT   36 (46)
T ss_dssp             SCCCCTTEEEEECTTSSEEEEETTTTEEE
T ss_pred             CCCCCcCcEEEEcCCCCEEEEECCCCCEe
Confidence            45799999999999999999999887644

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=93.77  E-value=0.018  Score=39.41  Aligned_cols=27  Identities=33%  Similarity=0.674  Sum_probs=23.9

Q ss_pred             CCCCCCCccccccccceeeecccchhh
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      .+||+||++..+.+|..||.||.++..
T Consensus         3 ~~LP~gWe~~~d~~g~~Yy~n~~t~~t   29 (36)
T 1wr4_A            3 PGLPSGWEERKDAKGRTYYVNHNNRTT   29 (36)
T ss_dssp             TTCCTTEEEEECSSSCEEEEETTTTEE
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCE
Confidence            579999999999999999999987653

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=93.70  E-value=0.036  Score=40.26  Aligned_cols=32  Identities=38%  Similarity=0.660  Sum_probs=27.1

Q ss_pred             cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +.....||+||+...+++|..||++|+++..+
T Consensus         3 ~P~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~   34 (46)
T 1jmq_A            3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTT   34 (46)
T ss_dssp             CCSSCCCCTTBCCBCCSSCCCBEEETTTTEEE
T ss_pred             CCCCCCCCcCcEEEEcCCCceEEEEecCCcee
Confidence            34567899999999999999999999888543

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=93.69  E-value=0.019  Score=39.54  Aligned_cols=27  Identities=37%  Similarity=0.728  Sum_probs=23.9

Q ss_pred             CCCCCCCccccccccceeeecccchhh
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      .+||+||+...+.+|..||.||.++..
T Consensus         3 ~~LP~GWe~~~d~~G~~Yy~n~~t~~t   29 (36)
T 1wr3_A            3 PPLPPGWEEKVDNLGRTYYVNHNNRST   29 (36)
T ss_dssp             SCSCTTEEEEECSSSCEEEEETTTCCE
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCE
Confidence            579999999999999999999987643

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=93.62  E-value=0.02  Score=43.85  Aligned_cols=31  Identities=42%  Similarity=0.804  Sum_probs=26.9

Q ss_pred             ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +...+||+||++..+.+|..||++|.++..+
T Consensus        10 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~Tt   40 (57)
T 2ysd_A           10 DNLGPLPENWEMAYTENGEVYFIDHNTKTTS   40 (57)
T ss_dssp             SCCCSCCSSEEEEECSSCCEEEEETTTTEEE
T ss_pred             CCCCCCCcCcEEEECCCCCEEEEECCCCcEe
Confidence            3467899999999999999999999888654

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=93.56  E-value=0.022  Score=42.30  Aligned_cols=29  Identities=34%  Similarity=0.606  Sum_probs=25.5

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||++..+.+|..||++|.++..+
T Consensus         9 ~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~   37 (49)
T 2ysb_A            9 DLPLPPGWSVDWTMRGRKYYIDHNTNTTH   37 (49)
T ss_dssp             CCCCCTTEEEEECSSSCEEEEETTTTEEE
T ss_pred             CCCCCCCceEEECCCCCEEEEEcCCCCEE
Confidence            45799999999999999999999887654

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=93.00  E-value=0.026  Score=41.79  Aligned_cols=29  Identities=28%  Similarity=0.558  Sum_probs=24.4

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||+...+.+|..||.||.++..+
T Consensus        10 ~~~LP~gWe~~~~~~G~~Yy~nh~T~~tt   38 (49)
T 2kpz_A           10 QGFLPKGWEVRHAPNGRPFFIDHNTKTTT   38 (49)
T ss_dssp             --CCCTTEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCCCCCcEEEECCCCCEEEEECCCCCEe
Confidence            46899999999999999999999887644

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=92.97  E-value=0.028  Score=39.93  Aligned_cols=29  Identities=28%  Similarity=0.552  Sum_probs=25.0

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||++..+.+|..||.||.++..+
T Consensus         6 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~   34 (41)
T 1wr7_A            6 QSFLPPGWEMRIAPNGRPFFIDHNTKTTT   34 (41)
T ss_dssp             CCSSCTTEEEEECTTSCEEEEETTTTEEE
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCee
Confidence            45799999999999999999999877543

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=92.95  E-value=0.028  Score=42.56  Aligned_cols=29  Identities=38%  Similarity=0.696  Sum_probs=25.7

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+|||+..+.+|..||++|.++..+
T Consensus         9 ~~~LP~GWe~~~~~~G~~Yyinh~tk~Tt   37 (54)
T 1wmv_A            9 AGDLPYGWEQETDENGQVFFVDHINKRTT   37 (54)
T ss_dssp             SSCSCTTEEEEECTTSCEEEEESSSCCEE
T ss_pred             CCCCCcCcEEEECCCCCEEEEeCCCCCEe
Confidence            46899999999999999999999888654

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=92.74  E-value=0.027  Score=41.77  Aligned_cols=28  Identities=32%  Similarity=0.590  Sum_probs=24.9

Q ss_pred             CCCCCCCccccccccceeeecccchhhH
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..||+|||...+.+|..||+||.++..+
T Consensus        12 ~~LP~GWe~~~d~~g~~YYvnh~t~~T~   39 (49)
T 2dwv_A           12 EGLPPGWERVESSEFGTYYVDHTNKRAQ   39 (49)
T ss_dssp             SCCCTTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CCCCcCcEEEECCCCCEEEEECCCCCEe
Confidence            6899999999999999999999887543

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=92.37  E-value=0.059  Score=37.09  Aligned_cols=27  Identities=33%  Similarity=0.694  Sum_probs=23.5

Q ss_pred             CCCCCCCccccccccceeeecccchhh
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      .+||+||+...+.+|..||.|+.++..
T Consensus         2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t   28 (37)
T 1e0m_A            2 MGLPPGWDEYKTHNGKTYYYNHNTKTS   28 (37)
T ss_dssp             CCSCTTEEEEECSSCCEEEEETTTTEE
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCe
Confidence            479999999999999999999977643

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.05  E-value=0.044  Score=39.33  Aligned_cols=29  Identities=45%  Similarity=0.745  Sum_probs=24.9

Q ss_pred             CCCCCCCCccccccccceeeecccchhhH
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ..+||+||+...+..|..||.||.++..+
T Consensus         5 ~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~   33 (43)
T 2dmv_A            5 SSGLPPGWEQRVDQHGRVYYVDHVEKRTT   33 (43)
T ss_dssp             CCSCCTTEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCCEe
Confidence            46899999999999999999999877543

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=90.21  E-value=0.14  Score=35.83  Aligned_cols=27  Identities=30%  Similarity=0.673  Sum_probs=23.8

Q ss_pred             CCCCCCCCccccccccceeeecccchh
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFM  296 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~  296 (518)
                      ...||+||+...+.+|..||.|+.++.
T Consensus         5 ~~~LP~gW~~~~d~~Gr~YY~n~~T~~   31 (40)
T 2ysh_A            5 SSGLPPGWQSYLSPQGRRYYVNTTTNE   31 (40)
T ss_dssp             CSSCCTTCEEEECTTSCEEEECSSSCC
T ss_pred             CCCCCCCceEEECCCCCEEEEECCCCC
Confidence            457999999999999999999997764

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=90.08  E-value=0.088  Score=45.49  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=27.4

Q ss_pred             ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +...+||+|||...+.+|..||++|.++.++
T Consensus        68 d~~~pLP~GWE~r~d~~Gr~YfIdH~tktTt   98 (109)
T 3l4h_A           68 DTRLELPRGWEIKTDQQGKSFFVDHNSRATT   98 (109)
T ss_dssp             CTTSCCCTTEEEEECTTCCEEEEETTTTEEE
T ss_pred             CCCCCCCCCCeEEECCCCCEEEEeCCCCCEe
Confidence            4467899999999999999999999988655

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=88.81  E-value=0.11  Score=36.62  Aligned_cols=27  Identities=37%  Similarity=0.660  Sum_probs=22.7

Q ss_pred             CCCCCCCCccccccccceeeecccchhh
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      ..+||+||+...+.+| +||.++.++..
T Consensus         6 ~~~LP~GWe~~~~~~G-~YY~n~~t~~t   32 (39)
T 2ysc_A            6 SGGLPPGWRKIHDAAG-TYYWHVPSGST   32 (39)
T ss_dssp             CCCCCTTEEEEEETTE-EEEEESSSCCE
T ss_pred             CCCCCCCcEEEEcCCC-CEEEEcCCCCE
Confidence            4689999999999999 69999877643

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=88.55  E-value=0.19  Score=35.82  Aligned_cols=27  Identities=44%  Similarity=0.924  Sum_probs=23.6

Q ss_pred             CCCCCCCccccccccceeeecccchhh
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      .+||+||+...+.+|..||.|+.++..
T Consensus         7 ~~LP~gW~~~~~~~Gr~YY~n~~T~~t   33 (43)
T 1ymz_A            7 MPLPPGWERRTDVEGKVYYFNVRTLTT   33 (43)
T ss_dssp             CCCCSSEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCCCCEEEECCCCCEEEEECCCCCC
Confidence            579999999999999999999977643

>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}

Probab=86.16  E-value=0.84  Score=42.26  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             CCCCCCEEEEEEecCh-hhHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHhc---CCeEEEEeeeCCCchhhh
Q psy7288           1 MFRVTGTAWVTLATND-SYALGALVVANSLKRVN-TVHDLAILITPGVTLAMKNELLKV---FNFVKEVDVFDSRDETNL   75 (518)
Q Consensus         1 ~~~~~~~A~VTl~tnd-~Yl~ga~VL~~SLr~~~-s~~~lvvLvt~~vs~~~r~~L~~~---~~~v~~V~~l~~~d~~~l   75 (518)
                      |....+...|..+.|. .|+.   -++.||.+.. ..+.+ |+++++-++...+.++++   +..++.+.   ..   + 
T Consensus         1 M~~~p~vsViIp~yn~~~~l~---~~l~Sl~~q~~~~~ei-IvvDd~S~d~t~~~~~~~~~~~~~i~~i~---~~---n-   69 (240)
T 3bcv_A            1 MSLIPKVSVIVPIYNVEKYLD---QCVQALLAQTLSDIEI-ILIDDESPDNCPKICDDYAAQYPNIKVIH---KK---N-   69 (240)
T ss_dssp             --CCCSEEEEEEESSCTTTHH---HHHHHHHTCSSSSEEE-EEEECCCSSSHHHHHHHHHHHCSSEEEEE---CC---C-
T ss_pred             CCCCCcEEEEEecCCCHHHHH---HHHHHHHhCcCCCeEE-EEEECCCCcCHHHHHHHHHhhCCCEEEEE---CC---C-
Confidence            4445567777777774 4554   4556776543 33333 455555555555555543   33443332   11   1 


Q ss_pred             cccCCCchhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288          76 RLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQN  113 (518)
Q Consensus        76 ~~~~rp~~~~tftKL~~w~L~eydKVVYLDaD~LVl~n  113 (518)
                             .+....+-...+....+-|+|||+|.++..+
T Consensus        70 -------~G~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~  100 (240)
T 3bcv_A           70 -------AGLGMACNSGLDVATGEYVAFCDSDDYVDSD  100 (240)
T ss_dssp             -------CCHHHHHHHHHHHCCSSEEEECCTTCCCCTT
T ss_pred             -------CChHHHHHHHHHHcCCCEEEEECCCCcCCHH
Confidence                   1223344455566678999999999987654

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=85.94  E-value=0.27  Score=40.65  Aligned_cols=30  Identities=50%  Similarity=0.915  Sum_probs=25.8

Q ss_pred             cCCCCCCCCccccccccceeeecccchhhH
Q psy7288         269 ELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       269 e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +...||.||++..+.+|.+||.+|.++..+
T Consensus        52 ~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~   81 (90)
T 2kxq_A           52 ELGPLPPGWEIRNTATGRVYFVDHNNRTTQ   81 (90)
T ss_dssp             GTCCCCSSCCEEECTTSCEEEEETTTTEEE
T ss_pred             cccccCCCceEEECCCCCEEEEECCCCcEe
Confidence            356899999999999999999999887543

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=85.49  E-value=0.24  Score=34.68  Aligned_cols=26  Identities=27%  Similarity=0.528  Sum_probs=21.9

Q ss_pred             CCCCCCCccccccccceeeecccchhh
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      ..||+||+...+..| .||.++.++..
T Consensus         2 ~~LP~GWe~~~d~~g-~YY~n~~t~~t   27 (38)
T 2ho2_A            2 SDLPAGWMRVQDTSG-TYYWHIPTGTT   27 (38)
T ss_dssp             CCSCTTEEEEECSSC-EEEEETTTTEE
T ss_pred             CcCCCCceEEEeCCC-CEEEecCCCCE
Confidence            369999999998899 99999877653

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=83.36  E-value=0.31  Score=40.12  Aligned_cols=28  Identities=39%  Similarity=0.746  Sum_probs=24.7

Q ss_pred             CCCCCCCCccccccccceeeecccchhh
Q psy7288         270 LGPLPPGWEQARTAEGQVYYLKGVLFMY  297 (518)
Q Consensus       270 ~~~l~~gwe~a~t~~g~~y~~~~~~~~~  297 (518)
                      ...||.||++..+.+|.+||.+|.++..
T Consensus        54 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~t   81 (88)
T 1tk7_A           54 EGPLPPGWEIRYTAAGERFFVDHNTRRT   81 (88)
T ss_dssp             SCSSCSSCEEEEETTTEEEEEETTTTEE
T ss_pred             ccccCCceEEEECCCCCEEEEECCCCcE
Confidence            4689999999999999999999987653

>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*

Probab=82.70  E-value=9.3  Score=35.42  Aligned_cols=98  Identities=9%  Similarity=0.007  Sum_probs=54.0

Q ss_pred             EEEEEEecCh-hhHHHHHHHHHHHHhhC-CCCeEEEEECCCCCHHHHHHHHhc--CCeEEEEeeeCCCchhhhcccCCCc
Q psy7288           7 TAWVTLATND-SYALGALVVANSLKRVN-TVHDLAILITPGVTLAMKNELLKV--FNFVKEVDVFDSRDETNLRLLSRPD   82 (518)
Q Consensus         7 ~A~VTl~tnd-~Yl~ga~VL~~SLr~~~-s~~~lvvLvt~~vs~~~r~~L~~~--~~~v~~V~~l~~~d~~~l~~~~rp~   82 (518)
                      ...|..+.|. .|+..   ++.||.+.. +.+. +|+++++-++...+.++++  ...++.+.   ..........  ..
T Consensus         3 vSViIp~yn~~~~l~~---~l~Sl~~q~~~~~e-iivvDd~S~d~t~~~~~~~~~~~~i~~i~---~~~~~~~~~~--~n   73 (255)
T 1qg8_A            3 VSVIMTSYNKSDYVAK---SISSILSQTFSDFE-LFIMDDNSNEETLNVIRPFLNDNRVRFYQ---SDISGVKERT--EK   73 (255)
T ss_dssp             EEEEEEESSCTTTHHH---HHHHHHTCSCCCEE-EEEEECSCCHHHHHHHGGGGGSTTEEEEE---CCCCSHHHHH--SS
T ss_pred             EEEEEEcCCCHHHHHH---HHHHHHhccCCceE-EEEEECCCCchHHHHHHHHhhcCCEEEEe---cccccccccc--cc
Confidence            4556666674 45544   566776543 3333 4456667778888888776  33333222   2100000000  01


Q ss_pred             hhhhhHhHhhhhccCcCeEEEecCCeEEcCC
Q psy7288          83 LGITFTKIHAWRLTQYSKCVFLDADVLIVQN  113 (518)
Q Consensus        83 ~~~tftKL~~w~L~eydKVVYLDaD~LVl~n  113 (518)
                      .+....+-........+-|+|||+|.++..+
T Consensus        74 ~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~  104 (255)
T 1qg8_A           74 TRYAALINQAIEMAEGEYITYATDDNIYMPD  104 (255)
T ss_dssp             CHHHHHHHHHHHHCCCSEEEEEETTEEECTT
T ss_pred             cCHHHHHHHHHHHcCCCEEEEeCCCCccChH
Confidence            2333445555666788999999999998654

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=80.98  E-value=0.48  Score=50.06  Aligned_cols=32  Identities=38%  Similarity=0.691  Sum_probs=27.3

Q ss_pred             cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      .+..++||+|||++.+++|.+||.+|.+++++
T Consensus         3 ~~~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~   34 (429)
T 3olm_A            3 ASQLGPLPSGWEMRLTNTARVYFVDHNTKTTT   34 (429)
T ss_dssp             --CCCCCCTTCCCCCSSCCCCCEEETTTTEEE
T ss_pred             CccCCCCCCCceeEECCCCCeEEEeCCCccee
Confidence            34578999999999999999999999988654

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=80.67  E-value=0.44  Score=47.12  Aligned_cols=28  Identities=18%  Similarity=0.291  Sum_probs=25.3

Q ss_pred             CCCCCCCccccccccceeeecccchhhH
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      +++|+|||++.|.+|..||.+|.+++++
T Consensus        10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~   37 (261)
T 1eg3_A           10 TSVQGPWERAISPNKVPYYINHETQTTC   37 (261)
T ss_dssp             TTCCTTEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCCCCcceeECCCCCeEeecCCccccc
Confidence            6899999999999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d1ll2a_	263	c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun	2e-47
d1ga8a_	282	c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri	2e-18
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	4e-07
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	2e-06
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	6e-06
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	2e-04

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  163 bits (413), Expect = 2e-47
 Identities = 94/160 (58%), Positives = 118/160 (73%)

Query: 4   VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKE 63
           +T  A+VTL TND+YA GALV+ +SLK+  T   LA+L TP V+  M+  L  VF+ V  
Sbjct: 1   MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 60

Query: 64  VDVFDSRDETNLRLLSRPDLGITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREEL 123
           VD+ DS D  +L L+ RP+LG+T TK+H W LTQYSKCVF+DAD L++ N D+LF+REEL
Sbjct: 61  VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREEL 120

Query: 124 SAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD 163
           SAAPD GWPDCFNSGVFV++PS  TYN L+  A   GSFD
Sbjct: 121 SAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD 160

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 83.4 bits (205), Expect = 2e-18
 Identities = 29/165 (17%), Positives = 59/165 (35%), Gaps = 24/165 (14%)

Query: 10  VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNEL---LKVFNFVKEVD 65
           +  A +D+YA    V A S++  +   ++   ++  G++ A +  +   L+         
Sbjct: 3   IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFI 62

Query: 66  VFDSRDETNLRLLSRPDLGITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE--- 121
             +  D     L  R     T+ ++          K ++LD DVL+  +   L+D +   
Sbjct: 63  DVNPEDFAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGD 122

Query: 122 -ELSAAPDAGWPDC---------------FNSGVFVFKPSESTYN 150
             L A+ D                     FN+GV +    +   +
Sbjct: 123 NWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRH 167

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.3 bits (105), Expect = 4e-07
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 267 LDELGPLPPGWEQARTAEGQVYY 289
           +D LGPLP GWE+   ++ +VY+
Sbjct: 7   MDALGPLPDGWEKKIQSDNRVYF 29

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 11/22 (50%), Positives = 18/22 (81%)

Query: 268 DELGPLPPGWEQARTAEGQVYY 289
           ++LGPLPPGWE+    +G+V++
Sbjct: 7   NDLGPLPPGWEERTHTDGRVFF 28

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.7 bits (96), Expect = 6e-06
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 271 GPLPPGWEQARTAEGQVYYL 290
           GPLPPGWE   TA G+ +++
Sbjct: 1   GPLPPGWEIRYTAAGERFFV 20

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 267 LDELGPLPPGWEQARTAEGQVYYL 290
           + +  PLP GWE A+T+ GQ Y+ 
Sbjct: 3   IPDDVPLPAGWEMAKTSSGQRYFK 26

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1ll2a_	263	Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId:	100.0
d1ga8a_	282	Galactosyltransferase LgtC {Neisseria meningitidis	99.96
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	96.86
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	96.21
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	96.15
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	95.84
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	87.37

>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.5e-44  Score=354.00  Aligned_cols=242  Identities=45%  Similarity=0.720  Sum_probs=204.2

Q ss_pred             CCCEEEEEEecChhhHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHhcCCeEEEEeeeCCCchhhhcccCCCch
Q psy7288           4 VTGTAWVTLATNDSYALGALVVANSLKRVNTVHDLAILITPGVTLAMKNELLKVFNFVKEVDVFDSRDETNLRLLSRPDL   83 (518)
Q Consensus         4 ~~~~A~VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvvLvt~~vs~~~r~~L~~~~~~v~~V~~l~~~d~~~l~~~~rp~~   83 (518)
                      ++.+||||+++|++|++||+||++||+++++.++++||++++++++.++.|+..+..++.|++++..+..+.....+.++
T Consensus         1 ~~~~A~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   80 (263)
T d1ll2a_           1 MTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPEL   80 (263)
T ss_dssp             CCSEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGG
T ss_pred             CCccEEEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccc
Confidence            47899999999999999999999999999999999999999999999999999999999998887766655554555567


Q ss_pred             hhhhHhHhhhhccCcCeEEEecCCeEEcCCChhhhCCCCcccccCCCCCCCCCceEEEEeCChHHHHHHHHHHHhcCCCC
Q psy7288          84 GITFTKIHAWRLTQYSKCVFLDADVLIVQNCDELFDREELSAAPDAGWPDCFNSGVFVFKPSESTYNALVEFALVNGSFD  163 (518)
Q Consensus        84 ~~tftKL~~w~L~eydKVVYLDaD~LVl~nIDeLF~~~elaAapD~gwp~~FNSGVmVi~Ps~~~~~~Ll~~~~~~~s~d  163 (518)
                      ..+|+||++|+|.+||||||||||+||++|||+||+.+.++|+++.+++.||||||||++|+.++++.|.+.+.+...+.
T Consensus        81 ~~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~  160 (263)
T d1ll2a_          81 GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFD  160 (263)
T ss_dssp             HHHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTT
T ss_pred             hhhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             cCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCcccccccccccc----cccCCCceEEcccCCCCCC
Q psy7288         164 DATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITSTSS----SVSGGGLQIAHPRAHSSPA  239 (518)
Q Consensus       164 ~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~y~y----~~~~~~~kIiHf~g~~KPW  239 (518)
                      ++||++   |      |.+|.+......      +..|     ++.||+.....+.+    .....+++||||+|..|||
T Consensus       161 ~~dq~~---l------n~~~~~~~~~~~------~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~g~~KPW  220 (263)
T d1ll2a_         161 GGDQGL---L------NTFFNSWATTDI------RKHL-----PFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPW  220 (263)
T ss_dssp             SSHHHH---H------HHHTTTTTTSCG------GGBC-----CGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGG
T ss_pred             hhhhhH---H------HHHHHhhhccCc------cccc-----CHHHhhhhhhhhhhhHhHHhhcCCeEEEEeCCCCCCC
Confidence            999999   9      999987642111      2445     89999887654443    2235789999999999999


Q ss_pred             Cccccch-----h---hhhhhhhHHHhhhhhhhc
Q psy7288         240 SLQQTYA-----S---AQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       240 ~~~~~~~-----~---~~~~~~~~~~~~WWdi~~  265 (518)
                      +......     .   .....+..+++.||++|+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ww~~~~  254 (263)
T d1ll2a_         221 NYTYDTKTKSVRSEGHDPTMTHPQFLNVWWDIFT  254 (263)
T ss_dssp             GSCEETTTTEEC--------CCHHHHHHHHHHHH
T ss_pred             CCCCCCCccccccchhhccccHHHHHHHHHHHHh
Confidence            8632110     0   012345688999999995

>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=99.96  E-value=5e-30  Score=253.74  Aligned_cols=221  Identities=18%  Similarity=0.244  Sum_probs=159.4

Q ss_pred             EEEecChhhHHHHHHHHHHHHhhCCCCeEEE-EECCCCCHHHHHHHHhc----CCeEEEEeeeCCCchhhhcccCCCchh
Q psy7288          10 VTLATNDSYALGALVVANSLKRVNTVHDLAI-LITPGVTLAMKNELLKV----FNFVKEVDVFDSRDETNLRLLSRPDLG   84 (518)
Q Consensus        10 VTl~tnd~Yl~ga~VL~~SLr~~~s~~~lvv-Lvt~~vs~~~r~~L~~~----~~~v~~V~~l~~~d~~~l~~~~rp~~~   84 (518)
                      |++++|++|+.|++|+++||+++++..++.+ +++.+++++.++.|+..    +..+..+++ +...........+....
T Consensus         3 Iv~~~D~nY~~~~~~~i~SL~~~~~~~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~s~   81 (282)
T d1ga8a_           3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDV-NPEDFAGFPLNIRHISI   81 (282)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHCTTSCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEEC-CGGGGTTSCCCCTTCCG
T ss_pred             EEEECCHHHHHHHHHHHHHHHHHCcCCCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEEC-CchHhccccccccccCH
Confidence            5678999999999999999999988777544 55789999998888664    345554442 22222221111222235


Q ss_pred             hhhHhHhhhhc-cCcCeEEEecCCeEEcCCChhhhCCC----CcccccCC------------CC---CCCCCceEEEEeC
Q psy7288          85 ITFTKIHAWRL-TQYSKCVFLDADVLIVQNCDELFDRE----ELSAAPDA------------GW---PDCFNSGVFVFKP  144 (518)
Q Consensus        85 ~tftKL~~w~L-~eydKVVYLDaD~LVl~nIDeLF~~~----elaAapD~------------gw---p~~FNSGVmVi~P  144 (518)
                      .+|.||+++.+ .+|+||||||+|+||++||++||+++    .++|++|.            ++   ..|||||||||++
T Consensus        82 ~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGVml~n~  161 (282)
T d1ga8a_          82 TTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGEYYFNAGVLLINL  161 (282)
T ss_dssp             GGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHTTCCTTSCCEEEEEEEECH
T ss_pred             HHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhhhhhhhHHHhCCCCCCceeecceeeech
Confidence            78999999995 68999999999999999999999975    46676652            22   2689999999998


Q ss_pred             ChHH----HHHHHHHHHhc-CCCCcCccccccccccCCCCCcccCCCCCCCCCCCCCccccCCCCCCCCccccccccc-c
Q psy7288         145 SEST----YNALVEFALVN-GSFDDATRQLQKPLNMRNLPKSFFQPPSTGSRSPSVSSISHSRENSADSAFGTSTITS-T  218 (518)
Q Consensus       145 s~~~----~~~Ll~~~~~~-~s~d~~DQdl~~pL~mr~lpN~~F~~~~~~di~p~~~~i~~Lr~~s~p~~YN~~~~~~-y  218 (518)
                      +.++    ++++++.+.+. ..+.++|||+   |      |.+|.+..           ..|     +..||++.... +
T Consensus       162 ~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~---L------N~~f~~~~-----------~~L-----~~~~N~~~~~~~~  216 (282)
T d1ga8a_         162 KKWRRHDIFKMSSEWVEQYKDVMQYQDQDI---L------NGLFKGGV-----------CYA-----NSRFNFMPTNYAF  216 (282)
T ss_dssp             HHHTTSCHHHHHHHHHHHHTTTCSSTHHHH---H------HHHHTTSE-----------EEE-----CGGGSBCHHHHHT
T ss_pred             hhhhhhhHHHHHHHHHHhcccCcccCchhH---H------HHHhcCCE-----------EeC-----CHHHeeccccccc
Confidence            7654    66777777664 4667899999   9      99998753           577     99999875321 0


Q ss_pred             cc---------------cccCCCceEEcccCCCCCCCccccchhhhhhhhhHHHhhhhhhhc
Q psy7288         219 SS---------------SVSGGGLQIAHPRAHSSPASLQQTYASAQQQHQQHLKQRSYDITT  265 (518)
Q Consensus       219 ~y---------------~~~~~~~kIiHf~g~~KPW~~~~~~~~~~~~~~~~~~~~WWdi~~  265 (518)
                      .+               .....+++||||.|+.|||+....         ......|++++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~---------~~~~~~~~~~~~  269 (282)
T d1ga8a_         217 MANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCT---------AWGAERFTELAG  269 (282)
T ss_dssp             CC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCC---------STTTHHHHHHHT
T ss_pred             cccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCC---------ChhHHHHHHHHH
Confidence            00               122467999999999999986432         133466777774

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.86  E-value=0.00012  Score=48.55  Aligned_cols=28  Identities=43%  Similarity=0.809  Sum_probs=25.1

Q ss_pred             CCCCCCCccccccccceeeecccchhhH
Q psy7288         271 GPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       271 ~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ++||+|||++.+.+|..||++|.++.++
T Consensus         1 GpLP~GWe~~~d~~G~~Yyinh~t~~T~   28 (33)
T d2jmfa1           1 GPLPPGWEIRYTAAGERFFVDHNTRRTT   28 (33)
T ss_dssp             SCCCTTEEEEECTTSCEEEEETTTCCEE
T ss_pred             CccCCCeeEEECCCCCEEEEECCCCcEe
Confidence            5899999999999999999999887543

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.21  E-value=0.00061  Score=48.16  Aligned_cols=32  Identities=34%  Similarity=0.755  Sum_probs=27.7

Q ss_pred             cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      ++.+++||+||+...+.+|+.||.+|.++..+
T Consensus         7 ~d~~gpLP~GWe~~~d~~G~~Yyinh~t~~T~   38 (45)
T d1tk7a1           7 MDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQ   38 (45)
T ss_dssp             SSTTSSSSSSCCEEEETTTEEEEEETTTTEEE
T ss_pred             CCCCCCCCCCceEEECCCCCEEEEECCCCCEE
Confidence            45678999999999999999999999887543

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.00061  Score=48.40  Aligned_cols=31  Identities=39%  Similarity=0.651  Sum_probs=27.1

Q ss_pred             ccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         268 DELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       268 ~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      .+..+||+||+...+.+|+.||.+|.++.++
T Consensus         4 ~~~~~LP~GWe~~~d~~G~~Yyinh~t~~T~   34 (46)
T d1jmqa_           4 PDDVPLPAGWEMAKTSSGQRYFKNHIDQTTT   34 (46)
T ss_dssp             CSSCCCCTTBCCBCCSSCCCBEEETTTTEEE
T ss_pred             CccCCCCCCceEEECCCCCEEEEECCCCCEe
Confidence            3456899999999999999999999888654

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0011  Score=47.86  Aligned_cols=32  Identities=34%  Similarity=0.899  Sum_probs=27.6

Q ss_pred             cccCCCCCCCCccccccccceeeecccchhhH
Q psy7288         267 LDELGPLPPGWEQARTAEGQVYYLKGVLFMYT  298 (518)
Q Consensus       267 l~e~~~l~~gwe~a~t~~g~~y~~~~~~~~~~  298 (518)
                      .+++++||+||+++.+.+|+.||.+|.++..+
T Consensus         6 ~~~~~pLP~gWe~~~~~~G~~YY~nh~t~~T~   37 (50)
T d1i5hw_           6 SNDLGPLPPGWEERTHTDGRVFFINHNIKKTQ   37 (50)
T ss_dssp             SSCCSSCSTTEEEEECTTSCEEEEETTTTEEE
T ss_pred             CCCCCCCCCCceEEECCCCCEEEEECCCCCEe
Confidence            34578999999999999999999999887654

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.11  Score=33.86  Aligned_cols=26  Identities=38%  Similarity=0.870  Sum_probs=21.8

Q ss_pred             CCCCCCcccccc-ccceeeecccchhh
Q psy7288         272 PLPPGWEQARTA-EGQVYYLKGVLFMY  297 (518)
Q Consensus       272 ~l~~gwe~a~t~-~g~~y~~~~~~~~~  297 (518)
                      .||+||+...++ .|..||.++.+...
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T   27 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNAS   27 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCE
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCE
Confidence            489999999886 69999999977643