Psyllid ID: psy731

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490----
Protein Sequence
MIFLLPRVLLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCDEM
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEccccccHHHHHHHHHccccccccccEEEEEEccccEEEEEcccccccccccEEEEccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEcccccccccccccEEEEEEcccccEEEEEEcccccccccccccEEEEEEEEcccccccEEEEEccccccEEEEEcccccEEEEEccccccccccccccccccccEEEEccccccccccccccEEEEEEEcccccccEEEEEcccccEEEEEEcccccEEEEEccccccccccccEEEccEEEEEcccEEEEEEccccccccEEEEEEccccccEEEEEcHHHccccccccccccccEEccccccccccccEEEEccccEEEEEEcccccEEEEEcccccccccccEEEEEEEccEEEccccEEEccccEEEEEEccccHHHccccccccccEEEEEEEHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccHHHHHHHHHccccccccccccccEEcccEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEccccccccccccEEEEEEEEccccccEEEcccccccccccccEEEEEEEccccccccEEEEEEccccEEEEEEccccccEEEEEccccccccccEEEcccccEEEEEccccccccccccEEEEEEEccccccccEEEEEccccccEEEEEEEccccEEEEEccccccccccccEEEccEEEEEcccEEEEEEccccccccEEEEEEccccccEEEEcHHHcccccccccccccccEEEccccccccccHcEEcccccEEEEEEEccccEEEEcccccccccHcccEEEEccccEEEEccccEEccccEEEEEEccccHHHcccccccccEEEEEEccHHHHHcccccccc
Coil and Loop (DISEMBL)
MIFLLPRVLLAILVVAILSLtahfsqssrlteifnwkqvdfafpnEEERRLAQTRGQfvaenclpvsldkwhdrlflavprhkngvpstlnyvmlpnsnnknksitspilmpypswesnvrEARNLTSVVKvqsdpcdrlwaldsgvvegkmeqppsvqvyDLRQQMQIRFFQlkektdyteeskfSNMVVDVTSANCDNAFLYIADSGHNHIVVYnyrtndshiihhnylhfdplfgdftiggeyseffqlkektdyteeskfSNMVVDVTSANCDDAFLYIADSGHNHIVVYnyrtndshiihhnylhfdplfgdftiggvnfqwqtgihgmslspltrdnfrvmyfhplastteFAVTTKVLQnrsldfsrsnfdfkvmgsrgtgsqsgassldeeTGVIFYALLVKSGvgcwntfrgeeyneksmglvaednatliypsdirvdRTGVLWVLSnklpvflysklkpedinVRIFKSTVRNaikgtvcdem
Flexible Loop (DISEMBL)
MIFLLPRVLLAILVVAILSLTAhfsqssrltEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPnsnnknksitspilmpyPSWESNVREARNLTSVvkvqsdpcdrLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQnrsldfsrsnfdfkvmgsrgtgsqsgassldEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLpvflysklkpedinvrifkstvrnaikgtvcdem
Low Complexity Region (SEG)
MifllprvllailvvailsltaHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCDEM
Disordered region (IsUnstruct)
*IFLLPRVLLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVML************PILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEG*******VQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDF********************TGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTV****
Disordered Region (DISOPRED)
****LPRVLLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKN*SITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGS************DEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC***
Disordered Region (DISEMBL)
MIFLLPRVLLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMG************LDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCDEM
Disordered Region (DISPRO)
MIFLLPRVLLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNN***SITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIFLLPRVLLAILVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCDEM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	494
FB|FBgn0041713	438	yellow-c "yellow-c" [Drosophil	0.564	0.636	0.412	2.2e-78
FB|FBgn0032601	453	yellow-b "yellow-b" [Drosophil	0.459	0.501	0.422	7.4e-50
FB|FBgn0038105	452	yellow-f2 "yellow-f2" [Drosoph	0.455	0.497	0.413	2.6e-49
FB|FBgn0041710	447	yellow-f "yellow-f" [Drosophil	0.455	0.503	0.391	4.7e-48
FB|FBgn0004034	541	y "yellow" [Drosophila melanog	0.463	0.423	0.375	8.4e-42
UNIPROTKB|Q8MZM5	462	dce "Dopachrome conversion enz	0.451	0.482	0.356	1.1e-41
FB|FBgn0039896	463	yellow-h "yellow-h" [Drosophil	0.473	0.505	0.344	8.3e-35
UNIPROTKB|O18330	432	MRJP1 "Major royal jelly prote	0.530	0.606	0.268	9.3e-24
FB|FBgn0038151	426	yellow-e2 "yellow-e2" [Drosoph	0.425	0.492	0.314	2.6e-23
FB|FBgn0034856	412	yellow-d2 "yellow-d2" [Drosoph	0.491	0.589	0.313	4.2e-23

FB|FBgn0041713 yellow-c "yellow-c" [Drosophila melanogaster (taxid:7227)]

 Score = 590 (212.7 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
 Identities = 122/296 (41%), Positives = 175/296 (59%)

Query:   198 CDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTD 257
             CD   L++ D+G   I+    +   + I+  + L  D L   FTI  +     Q KE   
Sbjct:   158 CDR--LWVLDTGLADILGSPKQITPNSILVFD-LKTDTLLRRFTIPAD-----QTKE--- 206

Query:   258 YTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGD 317
                +S F+N+VVD   + C DAF YI D G   ++VY+ R + S+ + HN+ HFDPL GD
Sbjct:   207 ---DSFFANIVVDADRSECQDAFAYIPDLGAYGVIVYSLRNDKSYRVKHNFFHFDPLHGD 263

Query:   318 FTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRS-LDFSRSN 376
             F +GGVNFQW  G+ G+++ P+  D+ + +YFH LAST EF V+ +VLQN S +    S 
Sbjct:   264 FNVGGVNFQWTDGVFGLAVGPMNPDHSKDIYFHALASTKEFKVSNRVLQNESHVTAGDSY 323

Query:   377 FDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN 436
             +DFK +G RG   QS A   D ETGVIFY  + K  + CWN  R   Y   + GL+  D+
Sbjct:   324 YDFKYVGDRGMNGQSTAEVFDPETGVIFYTQVNKDAIACWNIKR--PYTPDTQGLIDSDS 381

Query:   437 ATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCD 492
              TL++P+D+++D  G +WVLS+K+P +LY +L P  +N RI     R+ IKGT C+
Sbjct:   382 HTLVFPNDMKIDNEGTIWVLSDKMPTYLYKELDPSAVNYRILMGQNRDLIKGTPCE 437

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016853 "isomerase activity" evidence=IBA

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

FB|FBgn0032601 yellow-b "yellow-b" [Drosophila melanogaster (taxid:7227)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 98/232 (42%), Positives = 152/232 (65%)

Query:   262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIG 321
             S  +N+ V+   ++C++ F Y AD G   +VVY+++  +S  + H++ H DP+ G+F+I 
Sbjct:   176 SLLANLAVE--DSDCENTFAYAADLGSPGLVVYSWKDEESWRVQHHFFHPDPMAGNFSIN 233

Query:   322 GVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNF-DFK 380
             G+ FQW  G++G++LS      +  +YFHPL STTEF+V T +L+N++L  S   + +FK
Sbjct:   234 GIEFQWDDGLYGLALSKPLETGYATLYFHPLCSTTEFSVDTSILRNKTLATSPMIYREFK 293

Query:   381 VMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLI 440
             V+GSRG  +Q+GA  LD +TGV+FYAL   + V CW T    +++  S   +  +N TL+
Sbjct:   294 VLGSRGPNTQAGAEFLDPDTGVLFYALPNLNEVACWRT--ATDFSHSSQSRIHMNNDTLV 351

Query:   441 YPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCD 492
             +PSDI+VD    LWVLSN+LPVF+Y +L    IN RI  ++V+ AI+ T C+
Sbjct:   352 FPSDIKVDDQKRLWVLSNQLPVFIYDELYAGSINFRILTASVKEAIENTACE 403

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

FB|FBgn0038105 yellow-f2 "yellow-f2" [Drosophila melanogaster (taxid:7227)]

 Score = 482 (174.7 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 95/230 (41%), Positives = 139/230 (60%)

Query:   265 SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVN 324
             +++ VDV +  C DA+ YI D  +  + VY+ R +      HNY +FDPL GD +IGG  
Sbjct:   226 ASITVDVKAGQCGDAYAYIPDLVYRRLYVYHLRNDRIWSFEHNYFNFDPLSGDLSIGGQT 285

Query:   325 FQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNF--DFKVM 382
             F+W  GI  ++L     D  R  YFHP+AST EF V+ +VLQ  S + +RS+   DF+V+
Sbjct:   286 FRWDDGIFSITLGAQKLDGSRDAYFHPMASTNEFVVSNRVLQQES-NAARSDHGNDFRVL 344

Query:   383 GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP 442
             GSRG  +QS   + D  TGVIF+  + ++GVGCW T   +  + ++ G V  +   +IYP
Sbjct:   345 GSRGPSTQSTMHAYDPGTGVIFFDEIQRNGVGCWKT--SKPISAENYGSVDSNAEDMIYP 402

Query:   443 SDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCD 492
             SD+ +D  G +WV+SN +P+F+YS L     N RI+K     A +GTVC+
Sbjct:   403 SDLSIDEDGTIWVMSNSMPIFIYSTLDTSIYNFRIWKQKASLAKRGTVCE 452

GO:0005576 "extracellular region" evidence=IDA

GO:0004167 "dopachrome isomerase activity" evidence=IDA

GO:0048066 "developmental pigmentation" evidence=IC;TAS

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=IC;TAS

GO:0042435 "indole-containing compound biosynthetic process" evidence=IDA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0048067 "cuticle pigmentation" evidence=IBA

FB|FBgn0041710 yellow-f "yellow-f" [Drosophila melanogaster (taxid:7227)]

 Score = 470 (170.5 bits), Expect = 4.7e-48, Sum P(2) = 4.7e-48
 Identities = 90/230 (39%), Positives = 144/230 (62%)

Query:   265 SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVN 324
             +++ +DV +  C+DA+ YI D  +  + VY+ R++      H++ +FDPL  +  IGG  
Sbjct:   221 ASITIDVGARRCNDAYAYIPDLVNRRLHVYHLRSDRIWSFEHSFFNFDPLSDNLNIGGQT 280

Query:   325 FQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNF--DFKVM 382
             F+W  GI   +L     D  R ++FHP+AST EF V+ +VLQ +  + +RS+   DF ++
Sbjct:   281 FRWDDGIFSATLGSYKPDGSRDVFFHPMASTNEFVVSNRVLQ-QEFNAARSDHGDDFHLL 339

Query:   383 GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP 442
             G+RG  +QS     D  TGVIF+A + KSGVGCW T   + ++ ++ G V  +++ +IYP
Sbjct:   340 GTRGPSTQSTMHKYDPRTGVIFFAEVQKSGVGCWKT--SKPFSTENHGSVYSNSSEMIYP 397

Query:   443 SDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCD 492
             SD+ +D  G +WV+SN +P+F+YSKL  E  N RI++ +   A +GTVC+
Sbjct:   398 SDLTIDEEGYIWVMSNSMPIFVYSKLDVEKYNFRIWRQSTLLAKRGTVCE 447

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=IC;TAS

GO:0004167 "dopachrome isomerase activity" evidence=IDA

GO:0042435 "indole-containing compound biosynthetic process" evidence=IDA

GO:0005576 "extracellular region" evidence=IDA

GO:0048066 "developmental pigmentation" evidence=IC;TAS

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

FB|FBgn0004034 y "yellow" [Drosophila melanogaster (taxid:7227)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 89/237 (37%), Positives = 143/237 (60%)

Query:   259 TEESKF-SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHFDPLFG 316
             T  + F +N+ VD+   NCDDA+ Y AD     ++ Y++  N S     H+Y   DPL G
Sbjct:   175 TNPNTFIANIAVDI-GKNCDDAYAYFADELGYGLIAYSWELNKSWRFSAHSYFFPDPLRG 233

Query:   317 DFTIGGVNFQW-QTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRS 375
             DF + G+NFQW + GI GMSLSP+  D +R +YF PLAS  +FAV+T++L++ +     S
Sbjct:   234 DFNVAGINFQWGEEGIFGMSLSPIRSDGYRTLYFSPLASHRQFAVSTRILRDETRT-EDS 292

Query:   376 NFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED 435
               DF  +  RG  S + +  + ++ G+  + L+ ++ VGCW++     Y+ +  G+V  D
Sbjct:   293 YHDFVALDERGPNSHTTSRVMSDD-GIELFNLIDQNAVGCWHS--SMPYSPQFHGIVDRD 349

Query:   436 NATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCD 492
             +  L++P+D+++D    +WVLS+++PVFL S L   D N RI+ + +   I+ TVCD
Sbjct:   350 DVGLVFPADVKIDENKNVWVLSDRMPVFLLSDLDYSDTNFRIYTAPLATLIENTVCD 406

GO:0005576 "extracellular region" evidence=IDA

GO:0048066 "developmental pigmentation" evidence=IEP;IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0042438 "melanin biosynthetic process" evidence=IMP

GO:0048067 "cuticle pigmentation" evidence=IGI;IMP

GO:0048065 "male courtship behavior, veined wing extension" evidence=IMP

GO:0006583 "melanin biosynthetic process from tyrosine" evidence=TAS

GO:0060179 "male mating behavior" evidence=IMP

GO:0070451 "cell hair" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI

GO:0016853 "isomerase activity" evidence=IBA

UNIPROTKB|Q8MZM5 dce "Dopachrome conversion enzyme" [Anopheles gambiae (taxid:7165)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 83/233 (35%), Positives = 148/233 (63%)

Query:   265 SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVN 324
             +++ +DV  ++C+  F+YI+D     +VVY+Y    +    HNY   +PL GD+ I G+N
Sbjct:   181 TSITLDVDPSDCEKVFVYISDLQTYRMVVYDYANRRAWRFLHNYFFLNPLEGDYLIQGIN 240

Query:   325 FQWQTGIHGMSLS---PLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRS--NFDF 379
             F W  GI  ++L    P+T+  FR  YFH L+S +EF V+T+VL+N +    RS    DF
Sbjct:   241 FAWDDGIFSIALGNPDPVTK--FRTAYFHALSSNSEFTVSTRVLRNETAS-QRSWHGTDF 297

Query:   380 KVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATL 439
             +++G RG+ SQS   + D ETGVIF+AL+ ++ + CW++   + +  ++M +V +++  +
Sbjct:   298 QLLGYRGSKSQSSIHAFDPETGVIFFALIQQNAILCWDS--NKPFAPQNMAIVYKNDRDI 355

Query:   440 IYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVCD 492
             +YP+D+ +D+ G +W ++N +   LY++L  ++ N  ++++ ++  IKGTVCD
Sbjct:   356 VYPNDLSIDQNGYVWFMTNSIIKLLYTQLNLDEFNFFVWRANIKQIIKGTVCD 408

GO:0004167 "dopachrome isomerase activity" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0048067 "cuticle pigmentation" evidence=IBA

FB|FBgn0039896 yellow-h "yellow-h" [Drosophila melanogaster (taxid:7227)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 85/247 (34%), Positives = 141/247 (57%)

Query:   254 EKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHFD 312
             E +   ++S  SN+VVD+   +CDDA   ++D     ++VY+   N S  + ++N+ + D
Sbjct:   200 EASHVKQDSLHSNIVVDI-GEDCDDAHAIVSDVWRFGLLVYSLSKNRSWRVTNYNF-YPD 257

Query:   313 PLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSL-D 371
             P   DF + G+NFQW  G+ GMS+    +   RV+YFHP+AS  EF V   +L N S+  
Sbjct:   258 PFASDFNVYGLNFQWLDGVFGMSIYYNKKIMERVLYFHPMASFKEFMVPMNILLNESVWQ 317

Query:   372 FSRSNFD--FKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSM 429
              +   +   F  +G RG  SQS  S +    G++F+  + +  +GCW+T   + Y    +
Sbjct:   318 TNTQEYAKYFIPIGDRGYNSQSSTSGVTRN-GIMFFTQVHQDDIGCWDT--SKPYTRAHL 374

Query:   430 GLVAE-DNATLI-YPSDIRVDRTGV--LWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNA 485
             G     +N+ LI +P+D++VD+     +W++SN+LP+FLYS L   ++N RI K+ V   
Sbjct:   375 GKFHNMENSNLIQFPNDLKVDKEKDQNVWLISNRLPIFLYSNLDYGEVNFRILKANVNKI 434

Query:   486 IKGTVCD 492
             I+ +VC+
Sbjct:   435 IRNSVCN 441

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

UNIPROTKB|O18330 MRJP1 "Major royal jelly protein 1" [Apis mellifera (taxid:7460)]

 Score = 291 (107.5 bits), Expect = 9.3e-24, P = 9.3e-24
 Identities = 78/290 (26%), Positives = 134/290 (46%)

Query:    25 SQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHDRLFLAVPRHKN 84
             S +  L  +  WK  D+ F ++E R+ A   G++  +N  P  +D+WHD++F+ + R+ N
Sbjct:    26 SLNKSLPILHEWKFFDYDFGSDERRQDAILSGEYDYKNNYPSDIDQWHDKIFVTMLRY-N 84

Query:    85 GVPSTLNYVMLPNSNNKNKSITSPILMPYPSWE-SNVREARNLTSVVKVQSDPCDRLWAL 143
             GVPS+LN +      +K      P+L PYP W  +   +   + S  K+  D CDRLW L
Sbjct:    85 GVPSSLNVI------SKKVGDGGPLLQPYPDWSFAKYDDCSGIVSASKLAIDKCDRLWVL 138

Query:   144 DSGVVEGKMEQ-PPSVQVYDLRQQMQIRFFQLKEKTDY---TEESKFSNMVVDVTSANCD 199
             DSG+V        P +  +DL     ++  ++         T + + S++ V     N +
Sbjct:   139 DSGLVNNTQPMCSPKLLTFDLTTSQLLKQVEIPHDVAVNATTGKGRLSSLAVQSLDCNTN 198

Query:   200 N-AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDY 258
             +   +YIAD     ++VY+   +  H +  N   +DP F   TI GE            Y
Sbjct:   199 SDTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFDYDPKFTKMTIDGE-----------SY 247

Query:   259 TEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTND--SHIIHH 306
             T +   S M +   + N    +  +A +   ++    +RT+D   + IH+
Sbjct:   248 TAQDGISGMALSPMTNNL--YYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IDA

GO:0048650 "caste determination, influence by environmental factors" evidence=IDA

GO:0050829 "defense response to Gram-negative bacterium" evidence=IDA

GO:0050830 "defense response to Gram-positive bacterium" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IDA

FB|FBgn0038151 yellow-e2 "yellow-e2" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 72/229 (31%), Positives = 112/229 (48%)

Query:    33 IFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDKWHD------RLFLAVPRHKNGV 86
             +F WK + + FP+E+ER      G++  ++ +P+ +D ++       R F+  PR   GV
Sbjct:    35 VFEWKNLQYGFPSEQERDQVLRNGRYNPDSPIPIDIDVYYPPNGGPPRHFVTSPRFGQGV 94

Query:    87 PSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARN---LTSVVKVQSDPCDRLWAL 143
             P +L YV   N   +N S     +  YPS++ +     N   LTSV +V  D C ++W L
Sbjct:    95 PFSLGYVT--NVQRENGSE----IQAYPSYQWHSSHGANCDGLTSVYRVHIDACGQMWVL 148

Query:   144 DSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVT----SANCD 199
             DSG +E      P V V+DL     I  ++L E +   + S+F N+  D+     S  C 
Sbjct:   149 DSGEIEFVQHCAPQVMVFDLATDQLIHRYRLPETSYKAKVSRFVNIFADIRDPPPSGQCK 208

Query:   200 NAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSE 248
             + F Y+AD     IVVY+     S  I + + + D  FG  T+ GE  E
Sbjct:   209 DVFAYLADPTSKAIVVYDVVGQSSWRIENKFTYPDAKFGTHTVAGESFE 257

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

FB|FBgn0034856 yellow-d2 "yellow-d2" [Drosophila melanogaster (taxid:7227)]

 Score = 284 (105.0 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 81/258 (31%), Positives = 135/258 (52%)

Query:   244 GEYSEFFQLKEKTDYTEE-SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSH 302
             G+ +  +++ ++  Y E  S+F    V++   NCD  F+Y+ADS  + IVVY+     S 
Sbjct:   161 GKVAHQYKMPKRL-YKEGVSRFVTPTVELDPHNCDVGFVYMADSIGDGIVVYDVAAQQSW 219

Query:   303 IIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT 362
              I + + +  P FG FTI G +FQ   G    +L+P      R+MYFH L+S  + A+  
Sbjct:   220 RIENKFTYPHPDFGTFTIAGESFQLWDGTVSTTLTPHGLGGRRMMYFHSLSSEWQMAIPL 279

Query:   363 KVLQN----RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNT 418
              V+ N    R  D S +   F+++G RG  SQ  A+++ E +G +   L+  + +  WN 
Sbjct:   280 DVVNNGSNWRLNDVSAALDQFQLLGKRG--SQCVAAAMSE-SGFLICGLVQPASLLAWNI 336

Query:   419 FRGEEYNEKSMGLVAEDNATLIYPSDIRVDRT--GV--LWVLSNKLPVFLYSKLKPEDIN 474
               G  Y+ +++ ++ ED   L + S +++ R   G   LWVLSN+L     + L  ++IN
Sbjct:   337 RTG--YSHQNLVMLVEDEQRLQFASGLKIVRNHEGKEELWVLSNRLQKAFGAGLDYKEIN 394

Query:   475 VRIFKSTVRNAIKGTVCD 492
              RI K  V+  + G  C+
Sbjct:   395 FRIQKCGVQELLSGRPCN 412

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0048067 "cuticle pigmentation" evidence=IBA

GO:0042438 "melanin biosynthetic process" evidence=IBA

GO:0005576 "extracellular region" evidence=IBA

GO:0016853 "isomerase activity" evidence=IBA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	494
pfam03022	285	pfam03022, MRJP, Major royal jelly protein	6e-72
pfam03022	285	pfam03022, MRJP, Major royal jelly protein	2e-28

>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein

 Score =  229 bits (586), Expect = 6e-72
 Identities = 99/239 (41%), Positives = 148/239 (61%), Gaps = 7/239 (2%)

Query: 254 EKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDP 313
                   S+  N+VVDV    CDD F+YIAD+    ++VY+   + S  + HN  + DP
Sbjct: 53  PADVAKGNSRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDP 112

Query: 314 LFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFS 373
            FG FTI G +FQ   GI G++LSP T D  R +YFHPLAST  ++V T+VL+N +   +
Sbjct: 113 DFGKFTIAGESFQLDDGIFGLALSPRTPDG-RTLYFHPLASTRLYSVPTEVLRNETNWGN 171

Query: 374 RSNF-DFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLV 432
            + + DFK +G R T  QS A ++D   GV+F+ L+ ++ VGCWNT     Y+  ++G+V
Sbjct: 172 NAQYEDFKDLGDRNT--QSTALAVD-PNGVLFFGLVGQNAVGCWNTST--PYSRANLGVV 226

Query: 433 AEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC 491
           A ++ TL +PSD+++D+   LWVLSN++  FLY+ L  +++N RI  + V   I+ TVC
Sbjct: 227 ARNSDTLQFPSDLKIDKEEYLWVLSNRMQKFLYNDLDYDEVNFRILGANVDLLIRNTVC 285

Royal jelly is the food of queen bee larvae, and is responsible for the high reproductive ability of the queen. Major royal jelly proteins make up around 90% of larval jelly proteins. This family also the sequence-related yellow protein of drosophila which controls pigmentation of the adult cuticle and larval mouth parts. Length = 285

>gnl|CDD|217322 pfam03022, MRJP, Major royal jelly protein

 Score =  113 bits (286), Expect = 2e-28
 Identities = 51/132 (38%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 127 TSVVKVQSDPCDRLWALDSGVVE----GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTE 182
            SV ++  D CDRLW LDSG+V      K   PP + V+DL     ++ F+L        
Sbjct: 1   VSVYRIAVDECDRLWVLDSGIVNTLQPPKQICPPKLLVFDLATDKLLKRFEL-PADVAKG 59

Query: 183 ESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTI 242
            S+  N+VVDV    CD+ F+YIAD+    ++VY+   + S  + HN  + DP FG FTI
Sbjct: 60  NSRLVNLVVDVGDDTCDDTFVYIADAKGRGLIVYDLADDKSWRVEHNTFYPDPDFGKFTI 119

Query: 243 GGEYSEFFQLKE 254
            GE    FQL +
Sbjct: 120 AGES---FQLDD 128

Royal jelly is the food of queen bee larvae, and is responsible for the high reproductive ability of the queen. Major royal jelly proteins make up around 90% of larval jelly proteins. This family also the sequence-related yellow protein of drosophila which controls pigmentation of the adult cuticle and larval mouth parts. Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	494
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	100.0
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.12
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.37
PRK11028	330	6-phosphogluconolactonase; Provisional	98.29
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.28
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.12
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.12
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.09
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.07
PRK11028	330	6-phosphogluconolactonase; Provisional	98.07
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.03
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.0
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.76
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.61
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.42
COG3391	381	Uncharacterized conserved protein [Function unknow	97.33
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.31
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.3
KOG4659|consensus	1899		97.13
COG3391	381	Uncharacterized conserved protein [Function unknow	97.03
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.67
KOG4499|consensus	310		96.63
KOG1214|consensus	1289		96.12
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	96.03
KOG1539|consensus	910		95.98
PRK02888	635	nitrous-oxide reductase; Validated	95.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.65
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.49
KOG1520|consensus	376		95.45
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	95.22
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.62
KOG1520|consensus	376		94.5
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	94.08
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.03
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.79
PRK04922	433	tolB translocation protein TolB; Provisional	93.77
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	93.68
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.63
PRK00178	430	tolB translocation protein TolB; Provisional	93.39
PRK05137	435	tolB translocation protein TolB; Provisional	93.31
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	93.23
PRK04922	433	tolB translocation protein TolB; Provisional	93.0
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.73
KOG0291|consensus	893		92.71
PRK05137	435	tolB translocation protein TolB; Provisional	92.64
COG5276	370	Uncharacterized conserved protein [Function unknow	92.41
PRK04043	419	tolB translocation protein TolB; Provisional	91.9
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.87
PRK04792	448	tolB translocation protein TolB; Provisional	91.8
PRK03629	429	tolB translocation protein TolB; Provisional	91.59
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	91.55
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	91.43
PRK04792	448	tolB translocation protein TolB; Provisional	91.36
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.45
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.23
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.05
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	89.68
KOG4499|consensus	310		89.63
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.27
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	89.03
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	88.79
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	88.78
PRK04043	419	tolB translocation protein TolB; Provisional	88.72
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	88.47
KOG1214|consensus	1289		87.92
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	87.26
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	87.14
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	86.88
KOG0268|consensus	433		86.78
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	86.22
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	85.04
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	84.65
COG4946	668	Uncharacterized protein related to the periplasmic	83.81
KOG1539|consensus	910		82.52
PRK01742	429	tolB translocation protein TolB; Provisional	80.48
PRK01029	428	tolB translocation protein TolB; Provisional	80.18

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=100.00  E-value=2.5e-72  Score=567.22  Aligned_cols=280  Identities=40%  Similarity=0.760  Sum_probs=231.4

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCC----CCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEG----KMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~----~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      +||++++||+|+||||||+|..+.    .+.|+|||++|||+|++++|+|.||+                          
T Consensus         1 ~sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~--------------------------   54 (287)
T PF03022_consen    1 VSVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPP--------------------------   54 (287)
T ss_dssp             S-EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--C--------------------------
T ss_pred             CcccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECCh--------------------------
Confidence            699999999999999999999872    24999999999999999999999999                          


Q ss_pred             EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                                                                           +++++.++|++|+||.+..+|+++|||
T Consensus        55 -----------------------------------------------------~~~~~~s~lndl~VD~~~~~~~~~~aY   81 (287)
T PF03022_consen   55 -----------------------------------------------------DIAPPDSFLNDLVVDVRDGNCDDGFAY   81 (287)
T ss_dssp             -----------------------------------------------------CCS-TCGGEEEEEEECTTTTS-SEEEE
T ss_pred             -----------------------------------------------------HHcccccccceEEEEccCCCCcceEEE
Confidence                                                                 334455566666666666679999999


Q ss_pred             EecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          283 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       283 I~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      |+|++.+||||||++++++||++|++|+++|.++.|+++|+.|+|++|++||||+|...+| |+||||||+|+++|+|+|
T Consensus        82 ItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~-r~LYf~~lss~~ly~v~T  160 (287)
T PF03022_consen   82 ITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDG-RWLYFHPLSSRKLYRVPT  160 (287)
T ss_dssp             EEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS--EEEEEETT-SEEEEEEH
T ss_pred             EeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCc-cEEEEEeCCCCcEEEEEH
Confidence            9999999999999999999999999999999999999999999999999999999977777 999999999999999999


Q ss_pred             hhhcCCCcCccc-cccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          363 KVLQNRSLDFSR-SNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       363 ~~L~~~~~~~~~-~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      ++|+|+++...+ +.+.|+.+|+||  +|++||++| ++|+|||++++++||+|||+++  +|.++|+++|++|+++|+|
T Consensus       161 ~~L~~~~~~~~~~~~~~v~~lG~k~--~~s~g~~~D-~~G~ly~~~~~~~aI~~w~~~~--~~~~~~~~~l~~d~~~l~~  235 (287)
T PF03022_consen  161 SVLRDPSLSDAQALASQVQDLGDKG--SQSDGMAID-PNGNLYFTDVEQNAIGCWDPDG--PYTPENFEILAQDPRTLQW  235 (287)
T ss_dssp             HHHCSTT--HHH-HHHT-EEEEE-----SECEEEEE-TTTEEEEEECCCTEEEEEETTT--SB-GCCEEEEEE-CC-GSS
T ss_pred             HHhhCccccccccccccceeccccC--CCCceEEEC-CCCcEEEecCCCCeEEEEeCCC--CcCccchheeEEcCceeec
Confidence            999999986655 678999999996  789999999 8999999999999999999999  9999999999999777999


Q ss_pred             ccceEEcC--CceEEEEecCchhhhcCCCCCCcccEEEEEEechhhhcCCCC
Q psy731          442 PSDIRVDR--TGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC  491 (494)
Q Consensus       442 pd~~~id~--~g~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~~~~i~~t~C  491 (494)
                      ||++++++  +|+|||++||||++.+++++.+|+|||||+++++++|+||+|
T Consensus       236 pd~~~i~~~~~g~L~v~snrl~~~~~~~~~~~e~nfri~~~~v~~~~~~t~C  287 (287)
T PF03022_consen  236 PDGLKIDPEGDGYLWVLSNRLQRFAYGNLNPDEVNFRIWRARVDELIKGTVC  287 (287)
T ss_dssp             EEEEEE-T--TS-EEEEE-S--SSTGGG---SS-SEEEEES-HHHHHTTSTT
T ss_pred             cceeeeccccCceEEEEECcchHhhccCCCCCccEEeEEEeCHHHHhcCCCC
Confidence            99999999  999999999999999999999999999999999999999999

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.70  E-value=9.2e-16  Score=155.54  Aligned_cols=213  Identities=23%  Similarity=0.331  Sum_probs=138.8

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEE
Q psy731          136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVV  215 (494)
Q Consensus       136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIV  215 (494)
                      +.++|+++|+.+..       .+..|.++.+.+.            ++|+|+|++||.++.+|.++||||||++.+||||
T Consensus        32 ~~pKLv~~Dl~t~~-------li~~~~~p~~~~~------------~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV   92 (287)
T PF03022_consen   32 CPPKLVAFDLKTNQ-------LIRRYPFPPDIAP------------PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIV   92 (287)
T ss_dssp             S--EEEEEETTTTC-------EEEEEE--CCCS-------------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEE
T ss_pred             CCcEEEEEECCCCc-------EEEEEECChHHcc------------cccccceEEEEccCCCCcceEEEEeCCCcCcEEE
Confidence            45799999999982       6788899877653            5799999999998889999999999999999999


Q ss_pred             EEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEE
Q psy731          216 YNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYN  295 (494)
Q Consensus       216 yd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVyd  295 (494)
                      ||+++|++|||.|+++++||.++.|+++|+.   |++++        +..+|+....  .-++..+|..          .
T Consensus        93 ~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~---~~~~d--------g~~gial~~~--~~d~r~LYf~----------~  149 (287)
T PF03022_consen   93 YDLATGKSWRVLHNSFSPDPDAGPFTIGGES---FQWPD--------GIFGIALSPI--SPDGRWLYFH----------P  149 (287)
T ss_dssp             EETTTTEEEEEETCGCTTS-SSEEEEETTEE---EEETT--------SEEEEEE-TT--STTS-EEEEE----------E
T ss_pred             EEccCCcEEEEecCCcceeccccceeccCce---EecCC--------CccccccCCC--CCCccEEEEE----------e
Confidence            9999999999999999999999999999876   77654        1344444321  1123555554          4


Q ss_pred             cCCCcEEEEecCCcccCCCC------cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCC
Q psy731          296 YRTNDSHIIHHNYLHFDPLF------GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRS  369 (494)
Q Consensus       296 l~~~~swrv~~~~~~~dP~~------~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~  369 (494)
                      +.+.+..|+....+.-....      ..+..=|..-   ....|++.++.     ..|||.-+....++...+.-    .
T Consensus       150 lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~---~~s~g~~~D~~-----G~ly~~~~~~~aI~~w~~~~----~  217 (287)
T PF03022_consen  150 LSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG---SQSDGMAIDPN-----GNLYFTDVEQNAIGCWDPDG----P  217 (287)
T ss_dssp             TT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE------SECEEEEETT-----TEEEEEECCCTEEEEEETTT----S
T ss_pred             CCCCcEEEEEHHHhhCccccccccccccceeccccC---CCCceEEECCC-----CcEEEecCCCCeEEEEeCCC----C
Confidence            55566677754333211111      1122212211   23678999864     49999999999999887742    1


Q ss_pred             cCccccccceEEecccCC-CCCCCeEEeeCC--CCeEEEec
Q psy731          370 LDFSRSNFDFKVMGSRGT-GSQSGASSLDEE--TGVIFYAL  407 (494)
Q Consensus       370 ~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~--~G~ly~~~  407 (494)
                      +..    +.++.+-.-.. ..-.+++.+| .  +|.||+.-
T Consensus       218 ~~~----~~~~~l~~d~~~l~~pd~~~i~-~~~~g~L~v~s  253 (287)
T PF03022_consen  218 YTP----ENFEILAQDPRTLQWPDGLKID-PEGDGYLWVLS  253 (287)
T ss_dssp             B-G----CCEEEEEE-CC-GSSEEEEEE--T--TS-EEEEE
T ss_pred             cCc----cchheeEEcCceeeccceeeec-cccCceEEEEE
Confidence            111    23333432211 2457899999 7  89998854

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.44  E-value=1.1e-10  Score=114.35  Aligned_cols=232  Identities=16%  Similarity=0.153  Sum_probs=150.2

Q ss_pred             eeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          130 VKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       130 ~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      .++..|+ .++||++|....        +|+++|+.+++... +.+|.         .+.++++.     .++.+||++.
T Consensus         3 Egp~~d~~~g~l~~~D~~~~--------~i~~~~~~~~~~~~-~~~~~---------~~G~~~~~-----~~g~l~v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGG--------RIYRVDPDTGEVEV-IDLPG---------PNGMAFDR-----PDGRLYVADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTT--------EEEEEETTTTEEEE-EESSS---------EEEEEEEC-----TTSEEEEEET
T ss_pred             cceEEECCCCEEEEEEcCCC--------EEEEEECCCCeEEE-EecCC---------CceEEEEc-----cCCEEEEEEc
Confidence            3567785 999999999887        89999999987643 55444         56677763     4689999997


Q ss_pred             CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      .  ++.++|+.+++...+...+.                         ...+...++++++|.      ++-+|++|...
T Consensus        60 ~--~~~~~d~~~g~~~~~~~~~~-------------------------~~~~~~~~ND~~vd~------~G~ly~t~~~~  106 (246)
T PF08450_consen   60 G--GIAVVDPDTGKVTVLADLPD-------------------------GGVPFNRPNDVAVDP------DGNLYVTDSGG  106 (246)
T ss_dssp             T--CEEEEETTTTEEEEEEEEET-------------------------TCSCTEEEEEEEE-T------TS-EEEEEECC
T ss_pred             C--ceEEEecCCCcEEEEeeccC-------------------------CCcccCCCceEEEcC------CCCEEEEecCC
Confidence            4  45566999997766632110                         011345689999984      45599999864


Q ss_pred             --------CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEee
Q psy731          289 --------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV  360 (494)
Q Consensus       289 --------~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V  360 (494)
                              .+|+.++.. ++...+...                    ....+||++||+    ++.||+.-....++++.
T Consensus       107 ~~~~~~~~g~v~~~~~~-~~~~~~~~~--------------------~~~pNGi~~s~d----g~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen  107 GGASGIDPGSVYRIDPD-GKVTVVADG--------------------LGFPNGIAFSPD----GKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             BCTTCGGSEEEEEEETT-SEEEEEEEE--------------------ESSEEEEEEETT----SSEEEEEETTTTEEEEE
T ss_pred             CccccccccceEEECCC-CeEEEEecC--------------------cccccceEECCc----chheeecccccceeEEE
Confidence                    235556555 332221111                    123688999997    47999977666688888


Q ss_pred             echhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeE
Q psy731          361 TTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATL  439 (494)
Q Consensus       361 ~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l  439 (494)
                      +...=.. .     + ...+.+.+ .+..+..+|+++| ++|+||.+....+.|.++|+++  .+    ...+.. +  .
T Consensus       162 ~~~~~~~-~-----~-~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G--~~----~~~i~~-p--~  224 (246)
T PF08450_consen  162 DLDADGG-E-----L-SNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDG--KL----LREIEL-P--V  224 (246)
T ss_dssp             EEETTTC-C-----E-EEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTS--CE----EEEEE--S--S
T ss_pred             ecccccc-c-----e-eeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCc--cE----EEEEcC-C--C
Confidence            6532100 0     0 11122221 1112347999999 8999999999999999999997  32    233433 2  2


Q ss_pred             ecccceEEc-C-CceEEEEecC
Q psy731          440 IYPSDIRVD-R-TGVLWVLSNK  459 (494)
Q Consensus       440 ~~pd~~~id-~-~g~Lwvlsnr  459 (494)
                      ..|+.+.+. + .+.|||++.|
T Consensus       225 ~~~t~~~fgg~~~~~L~vTta~  246 (246)
T PF08450_consen  225 PRPTNCAFGGPDGKTLYVTTAR  246 (246)
T ss_dssp             SSEEEEEEESTTSSEEEEEEB-
T ss_pred             CCEEEEEEECCCCCEEEEEeCC
Confidence            378999994 3 3589999865

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.12  E-value=2.9e-08  Score=116.75  Aligned_cols=285  Identities=18%  Similarity=0.156  Sum_probs=169.0

Q ss_pred             CCceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEc-CCCcc------ccccCCccceEEEeec
Q psy731          124 RNLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQL-KEKTD------YTEESKFSNMVVDVTS  195 (494)
Q Consensus       124 ~~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~l-p~~~~------~~~~S~l~d~vVD~~~  195 (494)
                      +.|....++.+|. .++|||.|.+..        +|+++|+. ++++..+.- .+.-.      ...-.....+++|.  
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~--------rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~--  633 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHN--------RIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA--  633 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCC--------eEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC--
Confidence            4567777899996 588999999988        89999985 455544432 11000      00112346777874  


Q ss_pred             CCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC
Q psy731          196 ANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN  275 (494)
Q Consensus       196 ~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~  275 (494)
                         .++.+||+|..++.|-++|+.++....+...-..      .++..|...        ..........++++|.    
T Consensus       634 ---~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~------g~~~~gg~~--------~~~~~ln~P~gVa~dp----  692 (1057)
T PLN02919        634 ---KKNLLYVADTENHALREIDFVNETVRTLAGNGTK------GSDYQGGKK--------GTSQVLNSPWDVCFEP----  692 (1057)
T ss_pred             ---CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc------cCCCCCChh--------hhHhhcCCCeEEEEec----
Confidence               4677999999999999999999988777221100      001111100        0000012245678874    


Q ss_pred             CCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          276 CDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       276 c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                       +++.+||+|.+.+.|.+||..++....+.-..... ...+.. .....|.   +-.||+++|+    +++||+.--.+.
T Consensus       693 -~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~-~~~g~~-~~~~~~~---~P~GIavspd----G~~LYVADs~n~  762 (1057)
T PLN02919        693 -VNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER-NLNGSS-GTSTSFA---QPSGISLSPD----LKELYIADSESS  762 (1057)
T ss_pred             -CCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-cCCCCc-ccccccc---CccEEEEeCC----CCEEEEEECCCC
Confidence             35789999999999999999888765543221000 000000 0001122   3456999987    368999766666


Q ss_pred             ceEeeechhhcCCCcCccc--cccceEEeccc-C-----CCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccccc
Q psy731          356 TEFAVTTKVLQNRSLDFSR--SNFDFKVMGSR-G-----TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEK  427 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~--~~~~v~~~G~~-G-----~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~  427 (494)
                      ++..++.+--.........  ........|+. |     ......|+++| .+|+||+++...+.|..||++++.     
T Consensus       763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~LYVADs~N~rIrviD~~tg~-----  836 (1057)
T PLN02919        763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQIYVADSYNHKIKKLDPATKR-----  836 (1057)
T ss_pred             eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcEEEEECCCCEEEEEECCCCe-----
Confidence            6666654311000000000  00001112221 1     11235699999 899999999999999999998731     


Q ss_pred             ceeeeee-----------cCCeEecccceEEcCCceEEEEe
Q psy731          428 SMGLVAE-----------DNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       428 ~~~~v~~-----------d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                       +..++.           ....|..|.++.++++|.|||..
T Consensus       837 -v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaD  876 (1057)
T PLN02919        837 -VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVAD  876 (1057)
T ss_pred             -EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEE
Confidence             122221           12456789999999999999984

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.90  E-value=1.3e-06  Score=89.91  Aligned_cols=238  Identities=15%  Similarity=0.136  Sum_probs=138.7

Q ss_pred             EcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeE
Q psy731          134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHI  213 (494)
Q Consensus       134 iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~i  213 (494)
                      .++.+.||.+|....        +|++||+.+++.. .+..|.       .+-+-..+|      ..+.+..++.+.   
T Consensus        33 ~~~~~~L~w~DI~~~--------~i~r~~~~~g~~~-~~~~p~-------~~~~~~~~d------~~g~Lv~~~~g~---   87 (307)
T COG3386          33 DPDRGALLWVDILGG--------RIHRLDPETGKKR-VFPSPG-------GFSSGALID------AGGRLIACEHGV---   87 (307)
T ss_pred             cCCCCEEEEEeCCCC--------eEEEecCCcCceE-EEECCC-------Ccccceeec------CCCeEEEEcccc---
Confidence            345677999999887        8999999977653 466666       111222233      344555555543   


Q ss_pred             EEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEE
Q psy731          214 VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVV  293 (494)
Q Consensus       214 IVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliV  293 (494)
                      ..+|.+++..++...                         +.+.-.+...+|+..||.      ++.+|++|...     
T Consensus        88 ~~~~~~~~~~~t~~~-------------------------~~~~~~~~~r~ND~~v~p------dG~~wfgt~~~-----  131 (307)
T COG3386          88 RLLDPDTGGKITLLA-------------------------EPEDGLPLNRPNDGVVDP------DGRIWFGDMGY-----  131 (307)
T ss_pred             EEEeccCCceeEEec-------------------------cccCCCCcCCCCceeEcC------CCCEEEeCCCc-----
Confidence            333445555543311                         112233447789999984      36789998773     


Q ss_pred             EEcCCCcEEEEecCC-cccCCCCcceEEcCEEeeee----cceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCC
Q psy731          294 YNYRTNDSHIIHHNY-LHFDPLFGDFTIGGVNFQWQ----TGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNR  368 (494)
Q Consensus       294 ydl~~~~swrv~~~~-~~~dP~~~~~~v~G~~f~~~----~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~  368 (494)
                      ++  .++++.-...+ .+.+|.       |....+.    .-.+|||+||+    +++|||.--...++++++... .+.
T Consensus       132 ~~--~~~~~~~~~G~lyr~~p~-------g~~~~l~~~~~~~~NGla~SpD----g~tly~aDT~~~~i~r~~~d~-~~g  197 (307)
T COG3386         132 FD--LGKSEERPTGSLYRVDPD-------GGVVRLLDDDLTIPNGLAFSPD----GKTLYVADTPANRIHRYDLDP-ATG  197 (307)
T ss_pred             cc--cCccccCCcceEEEEcCC-------CCEEEeecCcEEecCceEECCC----CCEEEEEeCCCCeEEEEecCc-ccC
Confidence            11  11111111110 111221       1111111    12688999998    479999888778999998765 222


Q ss_pred             CcCccccccceEEec-ccCCCCCCCeEEeeCCCCeEEEeccCC-CeEEEEeCCCCccccccceeeeeecCCeEecccceE
Q psy731          369 SLDFSRSNFDFKVMG-SRGTGSQSGASSLDEETGVIFYALLVK-SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIR  446 (494)
Q Consensus       369 ~~~~~~~~~~v~~~G-~~G~~~qs~g~~~D~~~G~ly~~~~~~-~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~  446 (494)
                      ....  - ..+.... ++   +..+|+++| ++|+||.+.... .+|.+|+|++  +.    .+.+ .- +. .+|+...
T Consensus       198 ~~~~--~-~~~~~~~~~~---G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG--~l----~~~i-~l-P~-~~~t~~~  261 (307)
T COG3386         198 PIGG--R-RGFVDFDEEP---GLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDG--KL----LGEI-KL-PV-KRPTNPA  261 (307)
T ss_pred             ccCC--c-ceEEEccCCC---CCCCceEEe-CCCCEEEecccCCceEEEECCCC--cE----EEEE-EC-CC-CCCccce
Confidence            2111  1 1122222 23   568999999 999999655544 5999999996  32    2332 22 22 6888888


Q ss_pred             EcCC--ceEEEEecCchh
Q psy731          447 VDRT--GVLWVLSNKLPV  462 (494)
Q Consensus       447 id~~--g~Lwvlsnrl~~  462 (494)
                      +...  ..|||++++...
T Consensus       262 FgG~~~~~L~iTs~~~~~  279 (307)
T COG3386         262 FGGPDLNTLYITSARSGM  279 (307)
T ss_pred             EeCCCcCEEEEEecCCCC
Confidence            8543  489999987754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.77  E-value=2.4e-07  Score=90.75  Aligned_cols=190  Identities=17%  Similarity=0.203  Sum_probs=122.7

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      .++.+|++|...+.|+.||..++....+.-                               +  ..++++++.     .+
T Consensus        10 ~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------------------------------~--~~~G~~~~~-----~~   51 (246)
T PF08450_consen   10 RDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------------------------------P--GPNGMAFDR-----PD   51 (246)
T ss_dssp             TTTEEEEEETTTTEEEEEETTTTEEEEEES-------------------------------S--SEEEEEEEC-----TT
T ss_pred             CCCEEEEEEcCCCEEEEEECCCCeEEEEec-------------------------------C--CCceEEEEc-----cC
Confidence            478899999999999999999988765511                               0  156777773     34


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc---
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST---  355 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~---  355 (494)
                      +-+|+++.  .++.++|.++++.-.+.+......+              ..+.+.++++|+   |  .|||.-+...   
T Consensus        52 g~l~v~~~--~~~~~~d~~~g~~~~~~~~~~~~~~--------------~~~~ND~~vd~~---G--~ly~t~~~~~~~~  110 (246)
T PF08450_consen   52 GRLYVADS--GGIAVVDPDTGKVTVLADLPDGGVP--------------FNRPNDVAVDPD---G--NLYVTDSGGGGAS  110 (246)
T ss_dssp             SEEEEEET--TCEEEEETTTTEEEEEEEEETTCSC--------------TEEEEEEEE-TT---S---EEEEEECCBCTT
T ss_pred             CEEEEEEc--CceEEEecCCCcEEEEeeccCCCcc--------------cCCCceEEEcCC---C--CEEEEecCCCccc
Confidence            78899984  6677779998865444433111111              123567899876   3  5999766553   


Q ss_pred             -----ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccccccee
Q psy731          356 -----TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMG  430 (494)
Q Consensus       356 -----~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~  430 (494)
                           .+|++... -            .++.+.+.  ...+.|+++++....||+++...+.|.+++.+.... ...+.+
T Consensus       111 ~~~~g~v~~~~~~-~------------~~~~~~~~--~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~  174 (246)
T PF08450_consen  111 GIDPGSVYRIDPD-G------------KVTVVADG--LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG-ELSNRR  174 (246)
T ss_dssp             CGGSEEEEEEETT-S------------EEEEEEEE--ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC-CEEEEE
T ss_pred             cccccceEEECCC-C------------eEEEEecC--cccccceEECCcchheeecccccceeEEEecccccc-ceeeee
Confidence                 36666543 1            13333332  244679999965558999999999999999863101 112334


Q ss_pred             eeeecCCeEecccceEEcCCceEEEEe---cCchhh
Q psy731          431 LVAEDNATLIYPSDIRVDRTGVLWVLS---NKLPVF  463 (494)
Q Consensus       431 ~v~~d~~~l~~pd~~~id~~g~Lwvls---nrl~~~  463 (494)
                      +++.-....-.|||+.+|.+|+|||..   +++.++
T Consensus       175 ~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  175 VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred             eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence            554332333479999999999999994   555554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.68  E-value=1.8e-06  Score=101.94  Aligned_cols=236  Identities=16%  Similarity=0.132  Sum_probs=131.0

Q ss_pred             CCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccccccccc
Q psy731          184 SKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESK  263 (494)
Q Consensus       184 S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~  263 (494)
                      ++...++||.     .++.+||+|++.+.|.|+|........+...-- ....-|.|+-                ..-..
T Consensus       568 ~~P~gvavd~-----~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~-~G~~dG~~~~----------------a~f~~  625 (1057)
T PLN02919        568 KFPGKLAIDL-----LNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE-EGLRDGSFED----------------ATFNR  625 (1057)
T ss_pred             CCCceEEEEC-----CCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC-cCCCCCchhc----------------cccCC
Confidence            5556778874     578899999999999999987655544421000 0000011110                01123


Q ss_pred             ceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcc-cCCCCcceEEcCEEeeeecceeeeeeccCCCC
Q psy731          264 FSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH-FDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRD  342 (494)
Q Consensus       264 ~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~-~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~  342 (494)
                      ..+|++|.     ++..+||+|...+.|.++|+.++..-.+.-.... .+...+... ....+..+   .+|+++|+   
T Consensus       626 P~GIavd~-----~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~-~~~~ln~P---~gVa~dp~---  693 (1057)
T PLN02919        626 PQGLAYNA-----KKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKG-TSQVLNSP---WDVCFEPV---  693 (1057)
T ss_pred             CcEEEEeC-----CCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhh-hHhhcCCC---eEEEEecC---
Confidence            57788885     3567999999999999999998876666422111 000000000 00112222   35899885   


Q ss_pred             CceeEEEeeCCCcceEeeech--hhcCCCcCccccc-cceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC
Q psy731          343 NFRVMYFHPLASTTEFAVTTK--VLQNRSLDFSRSN-FDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF  419 (494)
Q Consensus       343 g~r~LYf~plss~~ly~V~T~--~L~~~~~~~~~~~-~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~  419 (494)
                       +..||+.--...+++.+...  .+.  ........ ......+......+..|+++++..+.||+++...+.|.+||++
T Consensus       694 -~g~LyVad~~~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~  770 (1057)
T PLN02919        694 -NEKVYIAMAGQHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK  770 (1057)
T ss_pred             -CCeEEEEECCCCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence             25888865555566555431  110  00000000 0000001111123567899995445699999999999999987


Q ss_pred             CCccc--------cccceee------eeecCCeEecccceEEcCCceEEEEe
Q psy731          420 RGEEY--------NEKSMGL------VAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       420 ~~~~~--------~~~~~~~------v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      ++...        .+.+..-      ... ...|..|.++.++++|.|||..
T Consensus       771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~-~~~l~~P~Gvavd~dG~LYVAD  821 (1057)
T PLN02919        771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGS-EVLLQHPLGVLCAKDGQIYVAD  821 (1057)
T ss_pred             CCcEEEEEecccccCcccccccCCCCchh-hhhccCCceeeEeCCCcEEEEE
Confidence            63210        0000000      001 1357789999999999999984

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.37  E-value=0.00021  Score=74.17  Aligned_cols=274  Identities=17%  Similarity=0.222  Sum_probs=156.4

Q ss_pred             CCCeeeeeee--eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCC
Q psy731           61 ENCLPVSLDK--WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCD  138 (494)
Q Consensus        61 ~~~~p~gv~v--~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~  138 (494)
                      .-.-|.-+++  .+.+||++-...  +-..++........        ++.|++--.     ... .=.+.-.+.+|+++
T Consensus        35 ~~~~Ps~l~~~~~~~~LY~~~e~~--~~~g~v~~~~i~~~--------~g~L~~~~~-----~~~-~g~~p~~i~~~~~g   98 (345)
T PF10282_consen   35 EGENPSWLAVSPDGRRLYVVNEGS--GDSGGVSSYRIDPD--------TGTLTLLNS-----VPS-GGSSPCHIAVDPDG   98 (345)
T ss_dssp             ESSSECCEEE-TTSSEEEEEETTS--STTTEEEEEEEETT--------TTEEEEEEE-----EEE-SSSCEEEEEECTTS
T ss_pred             CCCCCceEEEEeCCCEEEEEEccc--cCCCCEEEEEECCC--------cceeEEeee-----ecc-CCCCcEEEEEecCC
Confidence            3344555666  567888887654  22334444443221        133432111     000 11233446677665


Q ss_pred             -eEEEEeCCCCCCCCCCCCEEEEEECCCC-cEEEEE---EcCC---CccccccCCccceEEEeecCCCCCcEEEEeeCCC
Q psy731          139 -RLWALDSGVVEGKMEQPPSVQVYDLRQQ-MQIRFF---QLKE---KTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH  210 (494)
Q Consensus       139 -~LwvlD~G~~~~~~~~~Pklv~~dl~t~-~vi~~~---~lp~---~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~  210 (494)
                       .|++..-+..        .+.+|++.++ ++....   ..+.   ...-...++.-.+.++-     ++.++|++|.+.
T Consensus        99 ~~l~vany~~g--------~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~  165 (345)
T PF10282_consen   99 RFLYVANYGGG--------SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGA  165 (345)
T ss_dssp             SEEEEEETTTT--------EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTT
T ss_pred             CEEEEEEccCC--------eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCC
Confidence             4777776665        7888888874 444432   1110   00012345556666653     689999999999


Q ss_pred             CeEEEEEccCCc--eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          211 NHIVVYNYRTND--SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       211 ~~iIVyd~~~~~--~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      +.|.+|+++.+.  .-+...                           -.++.++..+.+++..     +..++|+.....
T Consensus       166 D~v~~~~~~~~~~~l~~~~~---------------------------~~~~~G~GPRh~~f~p-----dg~~~Yv~~e~s  213 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVDS---------------------------IKVPPGSGPRHLAFSP-----DGKYAYVVNELS  213 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEEE---------------------------EECSTTSSEEEEEE-T-----TSSEEEEEETTT
T ss_pred             CEEEEEEEeCCCceEEEeec---------------------------cccccCCCCcEEEEcC-----CcCEEEEecCCC
Confidence            999999998876  433211                           1245678888899875     478999999999


Q ss_pred             CeEEEEEcC-CCcEEEEecC-CcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceEeeechh
Q psy731          289 NHIVVYNYR-TNDSHIIHHN-YLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEFAVTTKV  364 (494)
Q Consensus       289 ~gliVydl~-~~~swrv~~~-~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly~V~T~~  364 (494)
                      +.|.||++. .+-.++.... ...+.. .     .|.     ...-+|+|||+    ++.||..-..+.  ..|++..+ 
T Consensus       214 ~~v~v~~~~~~~g~~~~~~~~~~~~~~-~-----~~~-----~~~~~i~ispd----g~~lyvsnr~~~sI~vf~~d~~-  277 (345)
T PF10282_consen  214 NTVSVFDYDPSDGSLTEIQTISTLPEG-F-----TGE-----NAPAEIAISPD----GRFLYVSNRGSNSISVFDLDPA-  277 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEESCETT-S-----CSS-----SSEEEEEE-TT----SSEEEEEECTTTEEEEEEECTT-
T ss_pred             CcEEEEeecccCCceeEEEEeeecccc-c-----ccc-----CCceeEEEecC----CCEEEEEeccCCEEEEEEEecC-
Confidence            999999999 2324444321 222110 0     011     24567999998    489999776654  45666321 


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEE--eCCCC
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCW--NTFRG  421 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w--~~~~~  421 (494)
                        +..+      ..++.+-..|  ....++++|+....||.+.-..+.|.+|  |+++|
T Consensus       278 --~g~l------~~~~~~~~~G--~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG  326 (345)
T PF10282_consen  278 --TGTL------TLVQTVPTGG--KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG  326 (345)
T ss_dssp             --TTTE------EEEEEEEESS--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             --CCce------EEEEEEeCCC--CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence              1111      1122222222  2357899995555799999999988877  45554

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.29  E-value=0.00048  Score=70.17  Aligned_cols=241  Identities=12%  Similarity=0.110  Sum_probs=132.7

Q ss_pred             eeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECC-CCcE--EEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          130 VKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLR-QQMQ--IRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       130 ~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~-t~~v--i~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      ..+.++++++ |+|......        .|..|++. ++++  +.++..+.        ....++++     .++.++|+
T Consensus        38 ~~l~~spd~~~lyv~~~~~~--------~i~~~~~~~~g~l~~~~~~~~~~--------~p~~i~~~-----~~g~~l~v   96 (330)
T PRK11028         38 QPMVISPDKRHLYVGVRPEF--------RVLSYRIADDGALTFAAESPLPG--------SPTHISTD-----HQGRFLFS   96 (330)
T ss_pred             ccEEECCCCCEEEEEECCCC--------cEEEEEECCCCceEEeeeecCCC--------CceEEEEC-----CCCCEEEE
Confidence            3456666654 677654322        57777775 4444  33332221        12345554     36789999


Q ss_pred             eeCCCCeEEEEEccC-CceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          206 ADSGHNHIVVYNYRT-NDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       206 tDs~~~~iIVyd~~~-~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +..+.+.|.|||+.+ |...+...                            ..........++++     .+..++|++
T Consensus        97 ~~~~~~~v~v~~~~~~g~~~~~~~----------------------------~~~~~~~~~~~~~~-----p~g~~l~v~  143 (330)
T PRK11028         97 ASYNANCVSVSPLDKDGIPVAPIQ----------------------------IIEGLEGCHSANID-----PDNRTLWVP  143 (330)
T ss_pred             EEcCCCeEEEEEECCCCCCCCcee----------------------------eccCCCcccEeEeC-----CCCCEEEEe
Confidence            999899999999964 32221100                            00000112333443     256899999


Q ss_pred             cCCCCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceEeee
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEFAVT  361 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly~V~  361 (494)
                      +.+.+.|.|||++++....-.. ......              .-.|..+++++|+    ++.||..-..+.  ..|.+.
T Consensus       144 ~~~~~~v~v~d~~~~g~l~~~~~~~~~~~--------------~g~~p~~~~~~pd----g~~lyv~~~~~~~v~v~~~~  205 (330)
T PRK11028        144 CLKEDRIRLFTLSDDGHLVAQEPAEVTTV--------------EGAGPRHMVFHPN----QQYAYCVNELNSSVDVWQLK  205 (330)
T ss_pred             eCCCCEEEEEEECCCCcccccCCCceecC--------------CCCCCceEEECCC----CCEEEEEecCCCEEEEEEEe
Confidence            9999999999998643211000 000000              0124556999987    478998655333  445554


Q ss_pred             ch--hhcCCCcCccccccceEEecc--cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCC
Q psy731          362 TK--VLQNRSLDFSRSNFDFKVMGS--RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNA  437 (494)
Q Consensus       362 T~--~L~~~~~~~~~~~~~v~~~G~--~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~  437 (494)
                      ..  .|+        ....+..+..  .|+ ....+++++|....||.+....+.|..|+.+...    ....++..- .
T Consensus       206 ~~~~~~~--------~~~~~~~~p~~~~~~-~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~----~~~~~~~~~-~  271 (330)
T PRK11028        206 DPHGEIE--------CVQTLDMMPADFSDT-RWAADIHITPDGRHLYACDRTASLISVFSVSEDG----SVLSFEGHQ-P  271 (330)
T ss_pred             CCCCCEE--------EEEEEecCCCcCCCC-ccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC----CeEEEeEEE-e
Confidence            21  110        0011111111  111 1233578886555799988888999999874310    112333332 2


Q ss_pred             eEecccceEEcCCc-eEEEE
Q psy731          438 TLIYPSDIRVDRTG-VLWVL  456 (494)
Q Consensus       438 ~l~~pd~~~id~~g-~Lwvl  456 (494)
                      .-.+|.++.++++| +||+.
T Consensus       272 ~~~~p~~~~~~~dg~~l~va  291 (330)
T PRK11028        272 TETQPRGFNIDHSGKYLIAA  291 (330)
T ss_pred             ccccCCceEECCCCCEEEEE
Confidence            23689999999988 56664

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.28  E-value=0.0012  Score=64.13  Aligned_cols=210  Identities=14%  Similarity=0.194  Sum_probs=116.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      +|.+||+.+++.++.+....        ....+.++     +++..+|++....+.|.+||..+++..+. ..       
T Consensus        12 ~v~~~d~~t~~~~~~~~~~~--------~~~~l~~~-----~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------   71 (300)
T TIGR03866        12 TISVIDTATLEVTRTFPVGQ--------RPRGITLS-----KDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-------   71 (300)
T ss_pred             EEEEEECCCCceEEEEECCC--------CCCceEEC-----CCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------
Confidence            78889999998888776433        12345553     35678999998889999999998876443 10       


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                               ......+.++.     ++.++|++...+..|.+||+.+.+..+....        
T Consensus        72 -------------------------~~~~~~~~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~--------  113 (300)
T TIGR03866        72 -------------------------GPDPELFALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPV--------  113 (300)
T ss_pred             -------------------------CCCccEEEECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC--------
Confidence                                     00011223331     3467888876677899999987653221100        


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEE
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASS  395 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~  395 (494)
                                  .....+|+++|+    ++.+++....+...+.+..+   ...     ..... ..+.     ...+++
T Consensus       114 ------------~~~~~~~~~~~d----g~~l~~~~~~~~~~~~~d~~---~~~-----~~~~~-~~~~-----~~~~~~  163 (300)
T TIGR03866       114 ------------GVEPEGMAVSPD----GKIVVNTSETTNMAHFIDTK---TYE-----IVDNV-LVDQ-----RPRFAE  163 (300)
T ss_pred             ------------CCCcceEEECCC----CCEEEEEecCCCeEEEEeCC---CCe-----EEEEE-EcCC-----CccEEE
Confidence                        011345888886    25666655433222222211   000     00000 1121     234678


Q ss_pred             eeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EEEE
Q psy731          396 LDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LWVL  456 (494)
Q Consensus       396 ~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvl  456 (494)
                      ++ .+| .||++.-..+.|..||..+++.........-... +.-.+|.++.++++|. +|+.
T Consensus       164 ~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       164 FT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             EC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEE
Confidence            88 455 5667766678899999987422110000000001 1124677888888774 5665

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.12  E-value=0.0025  Score=66.95  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=78.9

Q ss_pred             CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC---------
Q psy731          138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS---------  208 (494)
Q Consensus       138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs---------  208 (494)
                      .++||.|.+....   . -.+.++|..+++++.++....        .-+. ++     ..++.++||+.+         
T Consensus        13 ~~v~V~d~~~~~~---~-~~v~ViD~~~~~v~g~i~~G~--------~P~~-~~-----spDg~~lyva~~~~~R~~~G~   74 (352)
T TIGR02658        13 RRVYVLDPGHFAA---T-TQVYTIDGEAGRVLGMTDGGF--------LPNP-VV-----ASDGSFFAHASTVYSRIARGK   74 (352)
T ss_pred             CEEEEECCccccc---C-ceEEEEECCCCEEEEEEEccC--------CCce-eE-----CCCCCEEEEEeccccccccCC
Confidence            4688999885210   0 279999999999999888654        1111 12     126899999999         


Q ss_pred             CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC-
Q psy731          209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG-  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~-  287 (494)
                      ..+.|-|||.++.+.-+=  -++-++|++.    .|.+.+.|.|+.                      ++.++|+++.. 
T Consensus        75 ~~d~V~v~D~~t~~~~~~--i~~p~~p~~~----~~~~~~~~~ls~----------------------dgk~l~V~n~~p  126 (352)
T TIGR02658        75 RTDYVEVIDPQTHLPIAD--IELPEGPRFL----VGTYPWMTSLTP----------------------DNKTLLFYQFSP  126 (352)
T ss_pred             CCCEEEEEECccCcEEeE--EccCCCchhh----ccCccceEEECC----------------------CCCEEEEecCCC
Confidence            889999999999987533  1122333322    222223333321                      46788888876 


Q ss_pred             CCeEEEEEcCCCcEEE
Q psy731          288 HNHIVVYNYRTNDSHI  303 (494)
Q Consensus       288 ~~gliVydl~~~~swr  303 (494)
                      .+.+-|+|+.+++.-+
T Consensus       127 ~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658       127 SPAVGVVDLEGKAFVR  142 (352)
T ss_pred             CCEEEEEECCCCcEEE
Confidence            7788888888877655

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.12  E-value=0.001  Score=68.93  Aligned_cols=254  Identities=18%  Similarity=0.297  Sum_probs=141.1

Q ss_pred             eEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCC--cEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          131 KVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQ--MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       131 ~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~--~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      -+.+|+ ..+||+.+-...     ....|..|.+..+  ++...=..+.     .....-.+.+|-     ++.++|++.
T Consensus        41 ~l~~~~~~~~LY~~~e~~~-----~~g~v~~~~i~~~~g~L~~~~~~~~-----~g~~p~~i~~~~-----~g~~l~van  105 (345)
T PF10282_consen   41 WLAVSPDGRRLYVVNEGSG-----DSGGVSSYRIDPDTGTLTLLNSVPS-----GGSSPCHIAVDP-----DGRFLYVAN  105 (345)
T ss_dssp             CEEE-TTSSEEEEEETTSS-----TTTEEEEEEEETTTTEEEEEEEEEE-----SSSCEEEEEECT-----TSSEEEEEE
T ss_pred             eEEEEeCCCEEEEEEcccc-----CCCCEEEEEECCCcceeEEeeeecc-----CCCCcEEEEEec-----CCCEEEEEE
Confidence            344554 568999987641     1236777766664  4433222221     333445566653     789999999


Q ss_pred             CCCCeEEEEEccC-CceeEEec----CccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          208 SGHNHIVVYNYRT-NDSHIIHH----NYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       208 s~~~~iIVyd~~~-~~~~rv~~----~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      -+.+.+.||++.. |+.-...+    ....|+|                     .....+....+.++.     ++.++|
T Consensus       106 y~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~---------------------~rq~~~h~H~v~~~p-----dg~~v~  159 (345)
T PF10282_consen  106 YGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNP---------------------DRQEGPHPHQVVFSP-----DGRFVY  159 (345)
T ss_dssp             TTTTEEEEEEECTTSEEEEEEEEEESEEEESST---------------------TTTSSTCEEEEEE-T-----TSSEEE
T ss_pred             ccCCeEEEEEccCCcccceeeeecccCCCCCcc---------------------cccccccceeEEECC-----CCCEEE
Confidence            9999999999988 55544421    1111111                     112234455566653     468999


Q ss_pred             EecCCCCeEEEEEcCCCcE-EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCCc-ceEe
Q psy731          283 IADSGHNHIVVYNYRTNDS-HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAST-TEFA  359 (494)
Q Consensus       283 I~D~~~~gliVydl~~~~s-wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~-~ly~  359 (494)
                      ++|.+...|.+|++..+.- .... ......+              -.|=-.|+++|+    ++.+|. +-++++ ..|.
T Consensus       160 v~dlG~D~v~~~~~~~~~~~l~~~-~~~~~~~--------------G~GPRh~~f~pd----g~~~Yv~~e~s~~v~v~~  220 (345)
T PF10282_consen  160 VPDLGADRVYVYDIDDDTGKLTPV-DSIKVPP--------------GSGPRHLAFSPD----GKYAYVVNELSNTVSVFD  220 (345)
T ss_dssp             EEETTTTEEEEEEE-TTS-TEEEE-EEEECST--------------TSSEEEEEE-TT----SSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEEeCCCceEEEe-ecccccc--------------CCCCcEEEEcCC----cCEEEEecCCCCcEEEEe
Confidence            9999999999999986651 1111 1111111              123345888886    378888 455553 4444


Q ss_pred             eechhhcCCCcCccccccceEEecc--cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC--CCccccccceeeeeec
Q psy731          360 VTTKVLQNRSLDFSRSNFDFKVMGS--RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF--RGEEYNEKSMGLVAED  435 (494)
Q Consensus       360 V~T~~L~~~~~~~~~~~~~v~~~G~--~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~--~~~~~~~~~~~~v~~d  435 (494)
                      +.++   +..+.   ..+.+..+..  .|. ..+.+++++|..-.||.+.-..+.|..++.+  +| .+     ..+..-
T Consensus       221 ~~~~---~g~~~---~~~~~~~~~~~~~~~-~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-~l-----~~~~~~  287 (345)
T PF10282_consen  221 YDPS---DGSLT---EIQTISTLPEGFTGE-NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-TL-----TLVQTV  287 (345)
T ss_dssp             EETT---TTEEE---EEEEEESCETTSCSS-SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-TE-----EEEEEE
T ss_pred             eccc---CCcee---EEEEeeecccccccc-CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-ce-----EEEEEE
Confidence            4311   11110   1112222222  221 2467889995444899999999999999873  22 22     222221


Q ss_pred             CCeEecccceEEcCCce-EEEEe
Q psy731          436 NATLIYPSDIRVDRTGV-LWVLS  457 (494)
Q Consensus       436 ~~~l~~pd~~~id~~g~-Lwvls  457 (494)
                      +-.-.+|-+|.++++|. |||..
T Consensus       288 ~~~G~~Pr~~~~s~~g~~l~Va~  310 (345)
T PF10282_consen  288 PTGGKFPRHFAFSPDGRYLYVAN  310 (345)
T ss_dssp             EESSSSEEEEEE-TTSSEEEEEE
T ss_pred             eCCCCCccEEEEeCCCCEEEEEe
Confidence            11236899999999884 66653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=0.0014  Score=67.76  Aligned_cols=260  Identities=15%  Similarity=0.223  Sum_probs=158.2

Q ss_pred             CceEEeeEEEcCCC-eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          125 NLTSVVKVQSDPCD-RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       125 ~lvsV~~i~iD~~~-~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      .+.++.=+.++++. +|+++----.    .|.-.-..+|-.+|++-.-=.     ...+.+...++.||-     ++.|+
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~----~ggvaay~iD~~~G~Lt~ln~-----~~~~g~~p~yvsvd~-----~g~~v  103 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGE----EGGVAAYRIDPDDGRLTFLNR-----QTLPGSPPCYVSVDE-----DGRFV  103 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCC----cCcEEEEEEcCCCCeEEEeec-----cccCCCCCeEEEECC-----CCCEE
Confidence            34555666666554 6777632111    122244455555566543111     122445557888875     67899


Q ss_pred             EEeeCCCCeEEEEEccC-CceeEEe----cCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          204 YIADSGHNHIVVYNYRT-NDSHIIH----HNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~-~~~~rv~----~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      |.+.=..+.|-||=+++ |+.|...    |--..|+|                    .+..+-..++++..|       .
T Consensus       104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~--------------------rQ~~~h~H~a~~tP~-------~  156 (346)
T COG2706         104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHE--------------------RQESPHVHSANFTPD-------G  156 (346)
T ss_pred             EEEEccCceEEEEEcccCCccccceeeeecCCCCCCc--------------------cccCCccceeeeCCC-------C
Confidence            99999999999999955 8888772    21111111                    223333334444443       5


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCCc-c
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAST-T  356 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~-~  356 (494)
                      .|+..+|++...|.+|++..++.-...-..++  |..|              -==|++.|.    .+..|. +=|+|+ .
T Consensus       157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~--~G~G--------------PRHi~FHpn----~k~aY~v~EL~stV~  216 (346)
T COG2706         157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK--PGAG--------------PRHIVFHPN----GKYAYLVNELNSTVD  216 (346)
T ss_pred             CEEEEeecCCceEEEEEcccCccccccccccC--CCCC--------------cceEEEcCC----CcEEEEEeccCCEEE
Confidence            79999999999999999998876555444433  2222              112777775    478887 788887 5


Q ss_pred             eEeeech--hhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeC--CCCccccccceee
Q psy731          357 EFAVTTK--VLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNT--FRGEEYNEKSMGL  431 (494)
Q Consensus       357 ly~V~T~--~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~--~~~~~~~~~~~~~  431 (494)
                      .|..+..  .|+.-. .-..+.++|  -|+    ..+..+.+. .+| .||.++-..++|.++..  .+|      .+++
T Consensus       217 v~~y~~~~g~~~~lQ-~i~tlP~dF--~g~----~~~aaIhis-~dGrFLYasNRg~dsI~~f~V~~~~g------~L~~  282 (346)
T COG2706         217 VLEYNPAVGKFEELQ-TIDTLPEDF--TGT----NWAAAIHIS-PDGRFLYASNRGHDSIAVFSVDPDGG------KLEL  282 (346)
T ss_pred             EEEEcCCCceEEEee-eeccCcccc--CCC----CceeEEEEC-CCCCEEEEecCCCCeEEEEEEcCCCC------EEEE
Confidence            5555553  111100 111122332  233    346788998 566 89999999999998765  442      2456


Q ss_pred             eeecCCeEecccceEEcCCceEEEEecC
Q psy731          432 VAEDNATLIYPSDIRVDRTGVLWVLSNK  459 (494)
Q Consensus       432 v~~d~~~l~~pd~~~id~~g~Lwvlsnr  459 (494)
                      +..-+..-+||=++-+++.|.+.+.+||
T Consensus       283 ~~~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         283 VGITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             EEEeccCCcCCccceeCCCCCEEEEEcc
Confidence            6655567799999999998876665543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.07  E-value=0.0044  Score=60.24  Aligned_cols=226  Identities=15%  Similarity=0.086  Sum_probs=121.1

Q ss_pred             eEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC
Q psy731          131 KVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG  209 (494)
Q Consensus       131 ~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~  209 (494)
                      .+..+++++ |++......        .|..||+.++++++++..+.        ....+.++     .+..++|++...
T Consensus        35 ~l~~~~dg~~l~~~~~~~~--------~v~~~d~~~~~~~~~~~~~~--------~~~~~~~~-----~~g~~l~~~~~~   93 (300)
T TIGR03866        35 GITLSKDGKLLYVCASDSD--------TIQVIDLATGEVIGTLPSGP--------DPELFALH-----PNGKILYIANED   93 (300)
T ss_pred             ceEECCCCCEEEEEECCCC--------eEEEEECCCCcEEEeccCCC--------CccEEEEC-----CCCCEEEEEcCC
Confidence            456666665 566655443        68889999998887654332        11233332     246689999887


Q ss_pred             CCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          210 HNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       210 ~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      .+.|.+||+++++..+. ..                                ......+.++.     ++.+++++....
T Consensus        94 ~~~l~~~d~~~~~~~~~~~~--------------------------------~~~~~~~~~~~-----dg~~l~~~~~~~  136 (300)
T TIGR03866        94 DNLVTVIDIETRKVLAEIPV--------------------------------GVEPEGMAVSP-----DGKIVVNTSETT  136 (300)
T ss_pred             CCeEEEEECCCCeEEeEeeC--------------------------------CCCcceEEECC-----CCCEEEEEecCC
Confidence            78999999988654332 10                                00112334432     234555554444


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc--eEeeechhhc
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT--EFAVTTKVLQ  366 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~--ly~V~T~~L~  366 (494)
                      ..+.+||.++++..+..  . .                 .....+++++|+    ++.||+..-.+.+  +|.+.+..+.
T Consensus       137 ~~~~~~d~~~~~~~~~~--~-~-----------------~~~~~~~~~s~d----g~~l~~~~~~~~~v~i~d~~~~~~~  192 (300)
T TIGR03866       137 NMAHFIDTKTYEIVDNV--L-V-----------------DQRPRFAEFTAD----GKELWVSSEIGGTVSVIDVATRKVI  192 (300)
T ss_pred             CeEEEEeCCCCeEEEEE--E-c-----------------CCCccEEEECCC----CCEEEEEcCCCCEEEEEEcCcceee
Confidence            45667787765432211  0 0                 011234778876    3678776432323  3433332110


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                      . .     +  .++.-+......+..+++++ .+| .+|.+....+.|..||.++++ .    ...+...    ..|.++
T Consensus       193 ~-~-----~--~~~~~~~~~~~~~~~~i~~s-~dg~~~~~~~~~~~~i~v~d~~~~~-~----~~~~~~~----~~~~~~  254 (300)
T TIGR03866       193 K-K-----I--TFEIPGVHPEAVQPVGIKLT-KDGKTAFVALGPANRVAVVDAKTYE-V----LDYLLVG----QRVWQL  254 (300)
T ss_pred             e-e-----e--eecccccccccCCccceEEC-CCCCEEEEEcCCCCeEEEEECCCCc-E----EEEEEeC----CCcceE
Confidence            0 0     0  00000100001234578888 555 568877778899999987631 1    1222222    246788


Q ss_pred             EEcCCce-EEEE
Q psy731          446 RVDRTGV-LWVL  456 (494)
Q Consensus       446 ~id~~g~-Lwvl  456 (494)
                      .+.++|. ||+.
T Consensus       255 ~~~~~g~~l~~~  266 (300)
T TIGR03866       255 AFTPDEKYLLTT  266 (300)
T ss_pred             EECCCCCEEEEE
Confidence            8888885 5544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=98.07  E-value=0.0013  Score=66.95  Aligned_cols=222  Identities=16%  Similarity=0.237  Sum_probs=124.0

Q ss_pred             EEEEEECCC-Cc--EEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC-CceeEEecCccc
Q psy731          157 SVQVYDLRQ-QM--QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT-NDSHIIHHNYLH  232 (494)
Q Consensus       157 klv~~dl~t-~~--vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~-~~~~rv~~~~~~  232 (494)
                      .|..||+.+ ++  ++++++..        +..+.++++.     +..++|++.....+|.+|+++. |+.-.+..... 
T Consensus        13 ~I~~~~~~~~g~l~~~~~~~~~--------~~~~~l~~sp-----d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-   78 (330)
T PRK11028         13 QIHVWNLNHEGALTLLQVVDVP--------GQVQPMVISP-----DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-   78 (330)
T ss_pred             CEEEEEECCCCceeeeeEEecC--------CCCccEEECC-----CCCEEEEEECCCCcEEEEEECCCCceEEeeeecC-
Confidence            577777754 33  44544322        2344556642     5689999988889999999973 44322321111 


Q ss_pred             cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcE-EEEecCCccc
Q psy731          233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHF  311 (494)
Q Consensus       233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~s-wrv~~~~~~~  311 (494)
                                                  ......++++.     ++.++|++....+.|.||++.++.. .+..+.    
T Consensus        79 ----------------------------~~~p~~i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~----  121 (330)
T PRK11028         79 ----------------------------PGSPTHISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQI----  121 (330)
T ss_pred             ----------------------------CCCceEEEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceee----
Confidence                                        01123455553     4689999988888999999974321 111000    


Q ss_pred             CCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCC
Q psy731          312 DPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQS  391 (494)
Q Consensus       312 dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs  391 (494)
                              +.|     ..+..+++++|+    ++.||...+...++.-...+.  +..+... ....++.  ..|  ...
T Consensus       122 --------~~~-----~~~~~~~~~~p~----g~~l~v~~~~~~~v~v~d~~~--~g~l~~~-~~~~~~~--~~g--~~p  177 (330)
T PRK11028        122 --------IEG-----LEGCHSANIDPD----NRTLWVPCLKEDRIRLFTLSD--DGHLVAQ-EPAEVTT--VEG--AGP  177 (330)
T ss_pred             --------ccC-----CCcccEeEeCCC----CCEEEEeeCCCCEEEEEEECC--CCccccc-CCCceec--CCC--CCC
Confidence                    001     123567899986    479999777666444443321  1111100 0011111  112  124


Q ss_pred             CeEEeeCCCCeEEEeccCCCeEEEEeCCC--Cccccccceeeee---ecCCeEecccceEEcCCc-eEEEE
Q psy731          392 GASSLDEETGVIFYALLVKSGVGCWNTFR--GEEYNEKSMGLVA---EDNATLIYPSDIRVDRTG-VLWVL  456 (494)
Q Consensus       392 ~g~~~D~~~G~ly~~~~~~~aI~~w~~~~--~~~~~~~~~~~v~---~d~~~l~~pd~~~id~~g-~Lwvl  456 (494)
                      .+++++|....+|.+....+.|.+|+.+.  | .+.  -++.+.   .+-..-.||.++.++++| +||+.
T Consensus       178 ~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~-~~~--~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~  245 (330)
T PRK11028        178 RHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG-EIE--CVQTLDMMPADFSDTRWAADIHITPDGRHLYAC  245 (330)
T ss_pred             ceEEECCCCCEEEEEecCCCEEEEEEEeCCCC-CEE--EEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence            57899955557888888899999999862  1 221  111111   110112488889998887 57875

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.03  E-value=0.00067  Score=68.51  Aligned_cols=250  Identities=15%  Similarity=0.199  Sum_probs=163.4

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ...+.+..+.+|.+|.-+.|+.        .|=..|.+|+++.+ |.|++      .|.-..++|+      -++-++|+
T Consensus        62 ~ap~dvapapdG~VWft~qg~g--------aiGhLdP~tGev~~-ypLg~------Ga~Phgiv~g------pdg~~Wit  120 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTG--------AIGHLDPATGEVET-YPLGS------GASPHGIVVG------PDGSAWIT  120 (353)
T ss_pred             CCccccccCCCCceEEecCccc--------cceecCCCCCceEE-EecCC------CCCCceEEEC------CCCCeeEe
Confidence            3456778889999999999998        67888999999864 88877      5566677875      47889999


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      |++. +|.-+|-++...-|+                        +|+-   ......|+..++|.      .+.++++-.
T Consensus       121 d~~~-aI~R~dpkt~evt~f------------------------~lp~---~~a~~nlet~vfD~------~G~lWFt~q  166 (353)
T COG4257         121 DTGL-AIGRLDPKTLEVTRF------------------------PLPL---EHADANLETAVFDP------WGNLWFTGQ  166 (353)
T ss_pred             cCcc-eeEEecCcccceEEe------------------------eccc---ccCCCcccceeeCC------CccEEEeec
Confidence            9999 999999888877666                        4431   22344577777874      345555532


Q ss_pred             C-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731          287 G-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL  365 (494)
Q Consensus       287 ~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L  365 (494)
                      . .+|                   .-||-...+.|=-.+  .-.|-.||...|+     ..+||..|.+.-+=+|.+..=
T Consensus       167 ~G~yG-------------------rLdPa~~~i~vfpaP--qG~gpyGi~atpd-----Gsvwyaslagnaiaridp~~~  220 (353)
T COG4257         167 IGAYG-------------------RLDPARNVISVFPAP--QGGGPYGICATPD-----GSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             cccce-------------------ecCcccCceeeeccC--CCCCCcceEECCC-----CcEEEEeccccceEEcccccC
Confidence            1 122                   122222222211111  1135788999886     389999999988888876433


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                      ..+.+.        +.-+.+   .-+..+..| ..|.+..++-...++.++||..- ..  ....+--. ..   =|.++
T Consensus       221 ~aev~p--------~P~~~~---~gsRriwsd-pig~~wittwg~g~l~rfdPs~~-sW--~eypLPgs-~a---rpys~  281 (353)
T COG4257         221 HAEVVP--------QPNALK---AGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVT-SW--IEYPLPGS-KA---RPYSM  281 (353)
T ss_pred             Ccceec--------CCCccc---ccccccccC-ccCcEEEeccCCceeeEeCcccc-cc--eeeeCCCC-CC---Cccee
Confidence            221110        011111   124567788 79999999999999999999761 01  00111111 12   37899


Q ss_pred             EEcCCceEEEE---ecCchhhhcCCCCCCcccEEEEEEe
Q psy731          446 RVDRTGVLWVL---SNKLPVFLYSKLKPEDINVRIFKST  481 (494)
Q Consensus       446 ~id~~g~Lwvl---snrl~~~~~~~~~~~~~nfrI~r~~  481 (494)
                      .+|..|.+|..   +|-+.     ++|..+..|++|-.+
T Consensus       282 rVD~~grVW~sea~agai~-----rfdpeta~ftv~p~p  315 (353)
T COG4257         282 RVDRHGRVWLSEADAGAIG-----RFDPETARFTVLPIP  315 (353)
T ss_pred             eeccCCcEEeeccccCcee-----ecCcccceEEEecCC
Confidence            99999999996   35554     346777778877654

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.00  E-value=0.00056  Score=69.03  Aligned_cols=243  Identities=14%  Similarity=0.216  Sum_probs=147.7

Q ss_pred             CCccccCCCcccccccCCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCc
Q psy731          107 SPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKF  186 (494)
Q Consensus       107 sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l  186 (494)
                      +++.+-||--+        =-+..+|.+++++-+|+.|.|..         |.++|.+|..+.+ +.||.   ..+.-.|
T Consensus        92 tGev~~ypLg~--------Ga~Phgiv~gpdg~~Witd~~~a---------I~R~dpkt~evt~-f~lp~---~~a~~nl  150 (353)
T COG4257          92 TGEVETYPLGS--------GASPHGIVVGPDGSAWITDTGLA---------IGRLDPKTLEVTR-FPLPL---EHADANL  150 (353)
T ss_pred             CCceEEEecCC--------CCCCceEEECCCCCeeEecCcce---------eEEecCcccceEE-eeccc---ccCCCcc
Confidence            45666666422        24678889999999999999984         8999999988754 99987   3578889


Q ss_pred             cceEEEeecCCCCCcEEEEeeCCC-CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccce
Q psy731          187 SNMVVDVTSANCDNAFLYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFS  265 (494)
Q Consensus       187 ~d~vVD~~~~~c~~~~vYItDs~~-~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~  265 (494)
                      +..+.|      ..++++.|-..+ ++  -+|-.++...-+                        -      ++++....
T Consensus       151 et~vfD------~~G~lWFt~q~G~yG--rLdPa~~~i~vf------------------------p------aPqG~gpy  192 (353)
T COG4257         151 ETAVFD------PWGNLWFTGQIGAYG--RLDPARNVISVF------------------------P------APQGGGPY  192 (353)
T ss_pred             cceeeC------CCccEEEeeccccce--ecCcccCceeee------------------------c------cCCCCCCc
Confidence            999998      677777776533 11  122222222111                        0      12333344


Q ss_pred             eeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCce
Q psy731          266 NMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFR  345 (494)
Q Consensus       266 ~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r  345 (494)
                      .|.+-.      ++-+|.+-..++.|...|-.++.+=+|..+    ++             +..|.-+|..+|.     +
T Consensus       193 Gi~atp------dGsvwyaslagnaiaridp~~~~aev~p~P----~~-------------~~~gsRriwsdpi-----g  244 (353)
T COG4257         193 GICATP------DGSVWYASLAGNAIARIDPFAGHAEVVPQP----NA-------------LKAGSRRIWSDPI-----G  244 (353)
T ss_pred             ceEECC------CCcEEEEeccccceEEcccccCCcceecCC----Cc-------------ccccccccccCcc-----C
Confidence            444432      466888887888888887777754444322    11             1123334444443     2


Q ss_pred             eEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccc
Q psy731          346 VMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYN  425 (494)
Q Consensus       346 ~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~  425 (494)
                      .+.-+--....+++++.+.-         +..+..+-|.+   .....|-+| +.|.+++.+...++|.++|+.+     
T Consensus       245 ~~wittwg~g~l~rfdPs~~---------sW~eypLPgs~---arpys~rVD-~~grVW~sea~agai~rfdpet-----  306 (353)
T COG4257         245 RAWITTWGTGSLHRFDPSVT---------SWIEYPLPGSK---ARPYSMRVD-RHGRVWLSEADAGAIGRFDPET-----  306 (353)
T ss_pred             cEEEeccCCceeeEeCcccc---------cceeeeCCCCC---CCcceeeec-cCCcEEeeccccCceeecCccc-----
Confidence            33333333335555543221         12334444443   567889999 9999999999999999999998     


Q ss_pred             ccceeeeeecCCeEecccceEEc-CCceEEEEec
Q psy731          426 EKSMGLVAEDNATLIYPSDIRVD-RTGVLWVLSN  458 (494)
Q Consensus       426 ~~~~~~v~~d~~~l~~pd~~~id-~~g~Lwvlsn  458 (494)
                       ..+.++-.+.+.   +.-+..+ .-|+||....
T Consensus       307 -a~ftv~p~pr~n---~gn~ql~gr~ge~W~~e~  336 (353)
T COG4257         307 -ARFTVLPIPRPN---SGNIQLDGRPGELWFTEA  336 (353)
T ss_pred             -ceEEEecCCCCC---CCceeccCCCCceeeccc
Confidence             244555443222   2233343 3568888753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.76  E-value=0.006  Score=61.17  Aligned_cols=66  Identities=18%  Similarity=0.163  Sum_probs=42.0

Q ss_pred             CCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecC------CeEecccceEEcCCceEEEEe--cCch
Q psy731          390 QSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN------ATLIYPSDIRVDRTGVLWVLS--NKLP  461 (494)
Q Consensus       390 qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~------~~l~~pd~~~id~~g~Lwvls--nrl~  461 (494)
                      ...|+++||.+|+||.=.-+...|...|.++  ..    ...+.-+.      ..+.=|-||++|++|.|||.+  |+|-
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G--~~----~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy  245 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELDRQG--RV----VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY  245 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE-TT----E----EEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEECCCC--CE----EEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence            3568899999999999999999999999887  22    12222221      345569999999999999998  5543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.61  E-value=0.074  Score=55.83  Aligned_cols=81  Identities=14%  Similarity=0.175  Sum_probs=47.5

Q ss_pred             CCeEEEeccCCCeEEEEeCC--CCccccccceeeeeecCCeEecccceEEcCCceEEEEe--cCchhhhcCCCCCCcccE
Q psy731          400 TGVIFYALLVKSGVGCWNTF--RGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS--NKLPVFLYSKLKPEDINV  475 (494)
Q Consensus       400 ~G~ly~~~~~~~aI~~w~~~--~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls--nrl~~~~~~~~~~~~~nf  475 (494)
                      .|.+|+++.....|.+...+  +. .+..+....+... ...-=|-++.+++||.|||+.  +..=...+-.+......=
T Consensus       281 ~g~~fv~~~~~~~v~~~~l~~~g~-~~~~~~~~~l~~~-~~~~rp~dv~~~pDG~Lyv~d~~~~~i~~~~~d~~~~~~~G  358 (367)
T TIGR02604       281 RGLLLVGDAHGQLIVRYSLEPKGA-GFKGERPEFLRSN-DTWFRPVNVTVGPDGALYVSDWYDRGIEHHHDDLNDGRNSG  358 (367)
T ss_pred             CCCEEeeeccCCEEEEEEeecCCC-ccEeecCceEecC-CCcccccceeECCCCCEEEEEeccCccccCCcccccCCCCc
Confidence            58999999999999988753  31 2322212233322 222347789999999999986  111000000122334567


Q ss_pred             EEEEEec
Q psy731          476 RIFKSTV  482 (494)
Q Consensus       476 rI~r~~~  482 (494)
                      ||||+..
T Consensus       359 rIyRi~~  365 (367)
T TIGR02604       359 RIYRITP  365 (367)
T ss_pred             eEEEEcc
Confidence            8999864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.42  E-value=0.014  Score=60.28  Aligned_cols=182  Identities=14%  Similarity=0.115  Sum_probs=104.7

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ++..+|.+|-.++.|+.||..+|+..-+.....                               ......+|.      +
T Consensus        35 ~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~-------------------------------~~~~~~~d~------~   77 (307)
T COG3386          35 DRGALLWVDILGGRIHRLDPETGKKRVFPSPGG-------------------------------FSSGALIDA------G   77 (307)
T ss_pred             CCCEEEEEeCCCCeEEEecCCcCceEEEECCCC-------------------------------cccceeecC------C
Confidence            567789999999999999988887766632111                               112223332      2


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC----
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS----  354 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss----  354 (494)
                      +.+...   ..|+..++.+++..|+..+....--|          .-.+.|    .-+.|+     ..+||..|.+    
T Consensus        78 g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~----------~~r~ND----~~v~pd-----G~~wfgt~~~~~~~  135 (307)
T COG3386          78 GRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLP----------LNRPND----GVVDPD-----GRIWFGDMGYFDLG  135 (307)
T ss_pred             CeEEEE---ccccEEEeccCCceeEEeccccCCCC----------cCCCCc----eeEcCC-----CCEEEeCCCccccC
Confidence            333333   34556666666666655443211111          011122    234443     3788877772    


Q ss_pred             c-------ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC--CCcccc
Q psy731          355 T-------TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF--RGEEYN  425 (494)
Q Consensus       355 ~-------~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~--~~~~~~  425 (494)
                      .       .+|+++..            ....+.+-+.  ..++.|++.+|..-.||+++...+.|.+++-+  +|...+
T Consensus       136 ~~~~~~~G~lyr~~p~------------g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~  201 (307)
T COG3386         136 KSEERPTGSLYRVDPD------------GGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG  201 (307)
T ss_pred             ccccCCcceEEEEcCC------------CCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC
Confidence            1       35555421            1122222221  25688999996555999999999999999765  232222


Q ss_pred             ccceeeeeecCCeEecccceEEcCCceEEEE
Q psy731          426 EKSMGLVAEDNATLIYPSDIRVDRTGVLWVL  456 (494)
Q Consensus       426 ~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvl  456 (494)
                       . ...+..+. .=-.|||+.+|.+|.||+.
T Consensus       202 -~-~~~~~~~~-~~G~PDG~~vDadG~lw~~  229 (307)
T COG3386         202 -R-RGFVDFDE-EPGLPDGMAVDADGNLWVA  229 (307)
T ss_pred             -c-ceEEEccC-CCCCCCceEEeCCCCEEEe
Confidence             2 12233322 2257999999999999974

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.066  Score=56.66  Aligned_cols=203  Identities=17%  Similarity=0.210  Sum_probs=133.2

Q ss_pred             EeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      ..++.++. ..+++|.+....        .+.++|+.++++.+.+.+..        ....+++|.     +..++|++|
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~--------~v~vid~~~~~~~~~~~vG~--------~P~~~~~~~-----~~~~vYV~n  134 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSN--------TVSVIDTATNTVLGSIPVGL--------GPVGLAVDP-----DGKYVYVAN  134 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCC--------eEEEEcCcccceeeEeeecc--------CCceEEECC-----CCCEEEEEe
Confidence            34444443 456888887765        78889999999988776544        556777764     788999999


Q ss_pred             CC--CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          208 SG--HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       208 s~--~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                      ++  .+.+.|.|-.+++.-+-                               .+.+.....+++|.     +..++|++|
T Consensus       135 ~~~~~~~vsvid~~t~~~~~~-------------------------------~~vG~~P~~~a~~p-----~g~~vyv~~  178 (381)
T COG3391         135 AGNGNNTVSVIDAATNKVTAT-------------------------------IPVGNTPTGVAVDP-----DGNKVYVTN  178 (381)
T ss_pred             cccCCceEEEEeCCCCeEEEE-------------------------------EecCCCcceEEECC-----CCCeEEEEe
Confidence            95  57788888777765333                               01111124566664     468899999


Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC--cceEeeech
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS--TTEFAVTTK  363 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss--~~ly~V~T~  363 (494)
                      ...+.|.++|.++...|| .+....-..              -.+-.+++++|++    ..+|..-..+  ...+.+.+.
T Consensus       179 ~~~~~v~vi~~~~~~v~~-~~~~~~~~~--------------~~~P~~i~v~~~g----~~~yV~~~~~~~~~v~~id~~  239 (381)
T COG3391         179 SDDNTVSVIDTSGNSVVR-GSVGSLVGV--------------GTGPAGIAVDPDG----NRVYVANDGSGSNNVLKIDTA  239 (381)
T ss_pred             cCCCeEEEEeCCCcceec-ccccccccc--------------CCCCceEEECCCC----CEEEEEeccCCCceEEEEeCC
Confidence            999999999999999888 543211111              1223458998873    5777766665  355555543


Q ss_pred             hhcCCCcCccccccceEEe-cccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          364 VLQNRSLDFSRSNFDFKVM-GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       364 ~L~~~~~~~~~~~~~v~~~-G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..            .+... ...+.. +..+.+.+|....+|......+.+...|..+
T Consensus       240 ~~------------~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~  284 (381)
T COG3391         240 TG------------NVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT  284 (381)
T ss_pred             Cc------------eEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence            32            11111 112223 5677889866667777777778888888776

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.31  E-value=0.11  Score=54.69  Aligned_cols=288  Identities=11%  Similarity=0.035  Sum_probs=153.1

Q ss_pred             eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcC-CCeEEEEeCCCCC
Q psy731           71 WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDP-CDRLWALDSGVVE  149 (494)
Q Consensus        71 ~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~-~~~LwvlD~G~~~  149 (494)
                      ...|+||+=+.+.... .++.+|..+..         -.+.=.|--..    ..+      + +.+ ...|||..+...-
T Consensus        11 ~~~~v~V~d~~~~~~~-~~v~ViD~~~~---------~v~g~i~~G~~----P~~------~-~spDg~~lyva~~~~~R   69 (352)
T TIGR02658        11 DARRVYVLDPGHFAAT-TQVYTIDGEAG---------RVLGMTDGGFL----PNP------V-VASDGSFFAHASTVYSR   69 (352)
T ss_pred             CCCEEEEECCcccccC-ceEEEEECCCC---------EEEEEEEccCC----Cce------e-ECCCCCEEEEEeccccc
Confidence            3567888877743333 77778775432         11211221100    111      1 223 4478888882211


Q ss_pred             -CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCceeE-E
Q psy731          150 -GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSHI-I  226 (494)
Q Consensus       150 -~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~r-v  226 (494)
                       ..-...-.|.+||+.|.++++++++|++.-......-..+++.     .++.++||++.. .+++-|+|+.+++.-+ |
T Consensus        70 ~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls-----~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei  144 (352)
T TIGR02658        70 IARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLT-----PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM  144 (352)
T ss_pred             cccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEEC-----CCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence             0001122899999999999999999883111112233344443     367899999976 8999999999999876 3


Q ss_pred             ---ecCccccCCCCCccccCCccce-eeeecccccccccccceeeE-Ee-------eec--CCCCCcEEEEecCCCCeEE
Q psy731          227 ---HHNYLHFDPLFGDFTIGGEYSE-FFQLKEKTDYTEESKFSNMV-VD-------VTS--ANCDDAFLYIADSGHNHIV  292 (494)
Q Consensus       227 ---~~~~~~~dp~~~~f~i~g~~~~-~f~l~~~~~~~~~s~~~~i~-VD-------~~~--~~c~~~~~YI~D~~~~gli  292 (494)
                         +-.-.|+=+.-+.+.+.++-+- ..++.++..    +...+.. +|       .++  ..-+++.+|++-.  ..+.
T Consensus       145 ~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~----~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e--G~V~  218 (352)
T TIGR02658       145 DVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN----PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT--GKIF  218 (352)
T ss_pred             eCCCCcEEEEecCCccEEEeecCceEEEEecCCCc----eEEeeeeeecCCccccccCCceEcCCCcEEEEecC--CeEE
Confidence               1122222222222222222211 122221111    1111221 12       222  1224677888765  6677


Q ss_pred             EEEcCCCc-----EEEEecCCcccCCCCcceEEcCEEeee-ecceeeeeeccCCCCCceeEEEee---------CCCcce
Q psy731          293 VYNYRTND-----SHIIHHNYLHFDPLFGDFTIGGVNFQW-QTGIHGMSLSPLTRDNFRVMYFHP---------LASTTE  357 (494)
Q Consensus       293 Vydl~~~~-----swrv~~~~~~~dP~~~~~~v~G~~f~~-~~Gi~gIaLsp~~~~g~r~LYf~p---------lss~~l  357 (494)
                      +.|+.+..     .|.+..    ..+         ..=.| +.|.-+||++|+    ++.||...         ..+.++
T Consensus       219 ~id~~~~~~~~~~~~~~~~----~~~---------~~~~wrP~g~q~ia~~~d----g~~lyV~~~~~~~~thk~~~~~V  281 (352)
T TIGR02658       219 QIDLSSGDAKFLPAIEAFT----EAE---------KADGWRPGGWQQVAYHRA----RDRIYLLADQRAKWTHKTASRFL  281 (352)
T ss_pred             EEecCCCcceecceeeecc----ccc---------cccccCCCcceeEEEcCC----CCEEEEEecCCccccccCCCCEE
Confidence            88854443     232211    000         00012 356667999987    37999843         344566


Q ss_pred             EeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCC
Q psy731          358 FAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       358 y~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .-|.++-.+        ....+ .+|.+     .-++++.+... .||.+.-..+.|...|+.++
T Consensus       282 ~ViD~~t~k--------vi~~i-~vG~~-----~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~  332 (352)
T TIGR02658       282 FVVDAKTGK--------RLRKI-ELGHE-----IDSINVSQDAKPLLYALSTGDKTLYIFDAETG  332 (352)
T ss_pred             EEEECCCCe--------EEEEE-eCCCc-----eeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence            666553221        11111 13433     57899995445 67778878888999999874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.30  E-value=0.093  Score=54.66  Aligned_cols=165  Identities=15%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             CCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731          197 NCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC  276 (494)
Q Consensus       197 ~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c  276 (494)
                      +.++.|+.+.|-|...|.+|++.+|+.-+.+-                           ..++++++.+.|++-.     
T Consensus       153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~---------------------------~~v~~G~GPRHi~FHp-----  200 (346)
T COG2706         153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP---------------------------AEVKPGAGPRHIVFHP-----  200 (346)
T ss_pred             CCCCCEEEEeecCCceEEEEEcccCccccccc---------------------------cccCCCCCcceEEEcC-----
Confidence            34678999999999999999999999877632                           3457888899999874     


Q ss_pred             CCcEEEEecCCCCeEEEEEcCC--CcEEEEe-cCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEee--
Q psy731          277 DDAFLYIADSGHNHIVVYNYRT--NDSHIIH-HNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHP--  351 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~--~~swrv~-~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~p--  351 (494)
                      +..|||+.-.....+.||....  ++.-++- +..+..            .|.-..+.--|.+||+    +|.||-+-  
T Consensus       201 n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~------------dF~g~~~~aaIhis~d----GrFLYasNRg  264 (346)
T COG2706         201 NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPE------------DFTGTNWAAAIHISPD----GRFLYASNRG  264 (346)
T ss_pred             CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcc------------ccCCCCceeEEEECCC----CCEEEEecCC
Confidence            4789999999999999999887  4444443 233322            2333445566999997    48999843  


Q ss_pred             CCCcceEeeechhhcCCCcCccccccceEEecccCCCCC-CCeEEeeCCCCeEEEeccCCCeE--EEEeCCCC
Q psy731          352 LASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQ-SGASSLDEETGVIFYALLVKSGV--GCWNTFRG  421 (494)
Q Consensus       352 lss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~q-s~g~~~D~~~G~ly~~~~~~~aI--~~w~~~~~  421 (494)
                      ..|-..|+|..    +..        ..+.++..-..+| .....+++....|+.+.-..+.|  ...|+.+|
T Consensus       265 ~dsI~~f~V~~----~~g--------~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         265 HDSIAVFSVDP----DGG--------KLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             CCeEEEEEEcC----CCC--------EEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            33445555532    111        1222332211233 56789994344666665555544  45566655

>KOG4659|consensus

Probab=97.13  E-value=0.017  Score=67.96  Aligned_cols=207  Identities=13%  Similarity=0.094  Sum_probs=113.6

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ..++.|||-  .+.||-.=+.+|+.+-++=..-                       +..+...++|.-+++-..+    +
T Consensus       325 nG~n~~it~--~Prvitt~mgdG~qR~veC~~C-----------------------~G~a~~~~L~aPvala~a~----D  375 (1899)
T KOG4659|consen  325 NGGNRLITE--EPRVITTAMGDGHQRDVECPKC-----------------------EGKADSISLFAPVALAYAP----D  375 (1899)
T ss_pred             CCcceEeec--CCceEEEeccCcccccccCCCC-----------------------CCccccceeeceeeEEEcC----C
Confidence            578899998  8889998888888888832000                       1233444556655554432    4


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceE
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEF  358 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly  358 (494)
                      +-+||-|...   |.==..++....+..-.. .+|               ..-.-||+||.    +.+||.+-..+++.|
T Consensus       376 GSl~VGDfNy---IRRI~~dg~v~tIl~L~~-t~~---------------sh~Yy~AvsPv----dgtlyvSdp~s~qv~  432 (1899)
T KOG4659|consen  376 GSLIVGDFNY---IRRISQDGQVSTILTLGL-TDT---------------SHSYYIAVSPV----DGTLYVSDPLSKQVW  432 (1899)
T ss_pred             CcEEEccchh---eeeecCCCceEEEEEecC-CCc---------------cceeEEEecCc----CceEEecCCCcceEE
Confidence            5567766322   000011111111111000 111               22345999997    369999888889999


Q ss_pred             eeechhhcCCCcCcccc-------ccceEEecccC-----CCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc----
Q psy731          359 AVTTKVLQNRSLDFSRS-------NFDFKVMGSRG-----TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGE----  422 (494)
Q Consensus       359 ~V~T~~L~~~~~~~~~~-------~~~v~~~G~~G-----~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~----  422 (494)
                      +|+.-.=+|.....+.+       ....+--|+-|     ..-...|+++| +.|+|||++-.  .|...|+++-.    
T Consensus       433 rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstli  509 (1899)
T KOG4659|consen  433 RVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLI  509 (1899)
T ss_pred             EeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEec
Confidence            99763334433321111       01111123211     11235789999 99999999864  34555554310    


Q ss_pred             cccccceeeeee------cCCeEecccceEEcC-CceEEEEecCc
Q psy731          423 EYNEKSMGLVAE------DNATLIYPSDIRVDR-TGVLWVLSNKL  460 (494)
Q Consensus       423 ~~~~~~~~~v~~------d~~~l~~pd~~~id~-~g~Lwvlsnrl  460 (494)
                      .=++..+..+..      -+-+|.||.++++++ ++.|||+-|++
T Consensus       510 g~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nv  554 (1899)
T KOG4659|consen  510 GTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNV  554 (1899)
T ss_pred             cCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecce
Confidence            000111111110      025789999999998 77899998876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.03  E-value=0.045  Score=57.87  Aligned_cols=163  Identities=17%  Similarity=0.218  Sum_probs=111.3

Q ss_pred             EEeeEEEcCCC-eEEEEeCCC--CCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          128 SVVKVQSDPCD-RLWALDSGV--VEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       128 sV~~i~iD~~~-~LwvlD~G~--~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      ..+.+.+|..+ .+||.|.+.  .        .+.++|..++++++...-..       .. -.+++|-     ...++|
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~--------~vsvid~~t~~~~~~~~vG~-------~P-~~~a~~p-----~g~~vy  175 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNN--------TVSVIDAATNKVTATIPVGN-------TP-TGVAVDP-----DGNKVY  175 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCc--------eEEEEeCCCCeEEEEEecCC-------Cc-ceEEECC-----CCCeEE
Confidence            66778888766 999999974  3        79999999999999733222       11 4566653     688899


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      ++|+..+.|.++|......++ .....                         ..........+.|+.     +..++|++
T Consensus       176 v~~~~~~~v~vi~~~~~~v~~-~~~~~-------------------------~~~~~~~P~~i~v~~-----~g~~~yV~  224 (381)
T COG3391         176 VTNSDDNTVSVIDTSGNSVVR-GSVGS-------------------------LVGVGTGPAGIAVDP-----DGNRVYVA  224 (381)
T ss_pred             EEecCCCeEEEEeCCCcceec-ccccc-------------------------ccccCCCCceEEECC-----CCCEEEEE
Confidence            999999999999999998887 32111                         122233455667764     46889999


Q ss_pred             cCCC--CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          285 DSGH--NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       285 D~~~--~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      +...  ..+.+.|..++..-...-.            ++     -. .-.+++++|+    ++.+|..-..+..++.+++
T Consensus       225 ~~~~~~~~v~~id~~~~~v~~~~~~------------~~-----~~-~~~~v~~~p~----g~~~yv~~~~~~~V~vid~  282 (381)
T COG3391         225 NDGSGSNNVLKIDTATGNVTATDLP------------VG-----SG-APRGVAVDPA----GKAAYVANSQGGTVSVIDG  282 (381)
T ss_pred             eccCCCceEEEEeCCCceEEEeccc------------cc-----cC-CCCceeECCC----CCEEEEEecCCCeEEEEeC
Confidence            8776  5777777776553221110            00     01 2355999987    3788887666667877766


Q ss_pred             hh
Q psy731          363 KV  364 (494)
Q Consensus       363 ~~  364 (494)
                      +-
T Consensus       283 ~~  284 (381)
T COG3391         283 AT  284 (381)
T ss_pred             CC
Confidence            44

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.67  E-value=0.48  Score=50.11  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=45.3

Q ss_pred             eeeeeccCCCCCceeEEEe-eCCCc--ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEec
Q psy731          332 HGMSLSPLTRDNFRVMYFH-PLAST--TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYAL  407 (494)
Q Consensus       332 ~gIaLsp~~~~g~r~LYf~-plss~--~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~  407 (494)
                      +.|..+|+    .++||.. +|+..  .+.-|.++-|           +.++.+... +......+.+. ++| .+|++.
T Consensus       272 lFi~thP~----s~~vwvd~~~~~~~~~v~viD~~tl-----------~~~~~i~~~-~~~~~~h~ef~-~dG~~v~vS~  334 (369)
T PF02239_consen  272 LFIKTHPD----SRYVWVDTFLNPDADTVQVIDKKTL-----------KVVKTITPG-PGKRVVHMEFN-PDGKEVWVSV  334 (369)
T ss_dssp             --EE--TT-----SEEEEE-TT-SSHT-EEEEECCGT-----------EEEE-HHHH-HT--EEEEEE--TTSSEEEEEE
T ss_pred             ceeecCCC----CccEEeeccCCCCCceEEEEECcCc-----------ceeEEEecc-CCCcEeccEEC-CCCCEEEEEE
Confidence            77888887    5899997 55543  4444444444           112222211 00114467777 666 899999


Q ss_pred             cCCC-eEEEEeCCCCccccccceeeeeecCCeEecccceEE
Q psy731          408 LVKS-GVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRV  447 (494)
Q Consensus       408 ~~~~-aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~i  447 (494)
                      -..+ +|..+|+.+.        +++.+=+  +.=|+|.+.
T Consensus       335 ~~~~~~i~v~D~~Tl--------~~~~~i~--~~tP~G~f~  365 (369)
T PF02239_consen  335 WDGNGAIVVYDAKTL--------KEKKRIP--VPTPTGKFN  365 (369)
T ss_dssp             E--TTEEEEEETTTT--------EEEEEEE----SEEEEEE
T ss_pred             ecCCCEEEEEECCCc--------EEEEEEE--eeCCCeEec
Confidence            9999 9999999882        3443321  566777653

...

>KOG4499|consensus

Probab=96.63  E-value=0.14  Score=51.22  Aligned_cols=80  Identities=14%  Similarity=0.168  Sum_probs=53.2

Q ss_pred             eeeeeeccCCCCCceeEEEeeCCCcce--Ee--eechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEe
Q psy731          331 IHGMSLSPLTRDNFRVMYFHPLASTTE--FA--VTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYA  406 (494)
Q Consensus       331 i~gIaLsp~~~~g~r~LYf~plss~~l--y~--V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~  406 (494)
                      .+||+-+-+    .+..||.--.+...  |.  -+|-.|.|+.. --++. +.+.   .+ ....+||++| ..|+||.+
T Consensus       160 sNgl~Wd~d----~K~fY~iDsln~~V~a~dyd~~tG~~snr~~-i~dlr-k~~~---~e-~~~PDGm~ID-~eG~L~Va  228 (310)
T KOG4499|consen  160 SNGLAWDSD----AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKV-IFDLR-KSQP---FE-SLEPDGMTID-TEGNLYVA  228 (310)
T ss_pred             Ccccccccc----CcEEEEEccCceEEeeeecCCCcccccCcce-eEEec-cCCC---cC-CCCCCcceEc-cCCcEEEE
Confidence            467888755    47899854444444  33  67766665542 00111 1111   11 2457999999 89999999


Q ss_pred             ccCCCeEEEEeCCCC
Q psy731          407 LLVKSGVGCWNTFRG  421 (494)
Q Consensus       407 ~~~~~aI~~w~~~~~  421 (494)
                      -.+...|.+.||.+|
T Consensus       229 ~~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  229 TFNGGTVQKVDPTTG  243 (310)
T ss_pred             EecCcEEEEECCCCC
Confidence            999999999999986

>KOG1214|consensus

Probab=96.12  E-value=0.045  Score=62.15  Aligned_cols=158  Identities=14%  Similarity=0.221  Sum_probs=98.6

Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEe-eCC
Q psy731          275 NCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFH-PLA  353 (494)
Q Consensus       275 ~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~-pls  353 (494)
                      +|.+..+|-+|..++.|=.-+|...+--.+-                .+..--+   -|||+.-.    .|.+||. +|.
T Consensus      1033 DC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~----------------n~~L~SP---EGiAVDh~----~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1033 DCRERMVYWTDVAGRSISRASLEGAEPETIV----------------NSGLISP---EGIAVDHI----RRNMYWTDSVL 1089 (1289)
T ss_pred             ccccceEEEeecCCCccccccccCCCCceee----------------cccCCCc---cceeeeec----cceeeeecccc
Confidence            4999999999999888866666544311111                1111112   34888654    5899993 333


Q ss_pred             CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCC--CeEEEEeCCCCccccccceee
Q psy731          354 STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVK--SGVGCWNTFRGEEYNEKSMGL  431 (494)
Q Consensus       354 s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~--~aI~~w~~~~~~~~~~~~~~~  431 (494)
                      -    +|..+.| |.+.      +++-..-+.   -...++++|+-.|+||+++.++  -.|..-+.++      +|-++
T Consensus      1090 D----~IevA~L-dG~~------rkvLf~tdL---VNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG------~NrRi 1149 (1289)
T KOG1214|consen 1090 D----KIEVALL-DGSE------RKVLFYTDL---VNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDG------ENRRI 1149 (1289)
T ss_pred             c----hhheeec-CCce------eeEEEeecc---cCcceEEeecccCceeeccccccCCcceeeccCC------ccceE
Confidence            3    5555555 3321      222222222   3456899999999999999855  4577777777      58888


Q ss_pred             eeecCCeEecccceEEcCCceE--EEEe--cCchhhhcCC------CCCCcccEEE
Q psy731          432 VAEDNATLIYPSDIRVDRTGVL--WVLS--NKLPVFLYSK------LKPEDINVRI  477 (494)
Q Consensus       432 v~~d~~~l~~pd~~~id~~g~L--wvls--nrl~~~~~~~------~~~~~~nfrI  477 (494)
                      ++++  .+-.|+|+.+|+...+  ||=+  +|+-=.++++      ++.-++||-|
T Consensus      1150 lin~--DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~LqYPF~i 1203 (1289)
T KOG1214|consen 1150 LINT--DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNNLQYPFSI 1203 (1289)
T ss_pred             Eeec--ccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhcccCceee
Confidence            8875  4678999999997743  8874  6664333322      2234566655

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=96.03  E-value=0.83  Score=48.34  Aligned_cols=197  Identities=14%  Similarity=0.133  Sum_probs=110.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEE
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVY  216 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVy  216 (494)
                      .+-+.|...+..        +|.++|..|.+++++++...+       ....+.     ...+..|+|++.. .+.|-|+
T Consensus         5 ~~l~~V~~~~~~--------~v~viD~~t~~~~~~i~~~~~-------~h~~~~-----~s~Dgr~~yv~~r-dg~vsvi   63 (369)
T PF02239_consen    5 GNLFYVVERGSG--------SVAVIDGATNKVVARIPTGGA-------PHAGLK-----FSPDGRYLYVANR-DGTVSVI   63 (369)
T ss_dssp             GGEEEEEEGGGT--------EEEEEETTT-SEEEEEE-STT-------EEEEEE------TT-SSEEEEEET-TSEEEEE
T ss_pred             ccEEEEEecCCC--------EEEEEECCCCeEEEEEcCCCC-------ceeEEE-----ecCCCCEEEEEcC-CCeEEEE
Confidence            334455666665        788888888888888875431       111111     1235779999964 5789999


Q ss_pred             EccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEc
Q psy731          217 NYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNY  296 (494)
Q Consensus       217 d~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl  296 (494)
                      |+.+++.-+-                               ++.+....++++..     ++.|+|++....+.+.|+|.
T Consensus        64 D~~~~~~v~~-------------------------------i~~G~~~~~i~~s~-----DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   64 DLATGKVVAT-------------------------------IKVGGNPRGIAVSP-----DGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             ETTSSSEEEE-------------------------------EE-SSEEEEEEE-------TTTEEEEEEEETTEEEEEET
T ss_pred             ECCcccEEEE-------------------------------EecCCCcceEEEcC-----CCCEEEEEecCCCceeEecc
Confidence            9999984322                               22233345555542     57899999999999999999


Q ss_pred             CCCcEEEEe-cCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCcccc
Q psy731          297 RTNDSHIIH-HNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRS  375 (494)
Q Consensus       297 ~~~~swrv~-~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~  375 (494)
                      ++.+--+.- -..+..+..             ...+-+|.-+|.    .....+.-+-+.+.+-|..+.+++..      
T Consensus       108 ~tle~v~~I~~~~~~~~~~-------------~~Rv~aIv~s~~----~~~fVv~lkd~~~I~vVdy~d~~~~~------  164 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGP-------------ESRVAAIVASPG----RPEFVVNLKDTGEIWVVDYSDPKNLK------  164 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS----------------EEEEEE-SS----SSEEEEEETTTTEEEEEETTTSSCEE------
T ss_pred             ccccceeeccccccccccc-------------CCCceeEEecCC----CCEEEEEEccCCeEEEEEeccccccc------
Confidence            987754432 122211110             112455666664    23455555656677777654442211      


Q ss_pred             ccceEEecccCCCCCCCeEEeeCCCCeE-EEeccCCCeEEEEeCCC
Q psy731          376 NFDFKVMGSRGTGSQSGASSLDEETGVI-FYALLVKSGVGCWNTFR  420 (494)
Q Consensus       376 ~~~v~~~G~~G~~~qs~g~~~D~~~G~l-y~~~~~~~aI~~w~~~~  420 (494)
                       ......|+     +.....+| .+|.. +.+.-..|.|..+|+.+
T Consensus       165 -~~~i~~g~-----~~~D~~~d-pdgry~~va~~~sn~i~viD~~~  203 (369)
T PF02239_consen  165 -VTTIKVGR-----FPHDGGFD-PDGRYFLVAANGSNKIAVIDTKT  203 (369)
T ss_dssp             -EEEEE--T-----TEEEEEE--TTSSEEEEEEGGGTEEEEEETTT
T ss_pred             -eeeecccc-----cccccccC-cccceeeecccccceeEEEeecc
Confidence             11111232     23456888 67754 45577889999999887

...

>KOG1539|consensus

Probab=95.98  E-value=0.33  Score=55.44  Aligned_cols=201  Identities=15%  Similarity=0.184  Sum_probs=135.5

Q ss_pred             ceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEE-cCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          126 LTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQ-LKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       126 lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~-lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      -.++..+.++.||.--++=....        .|-+||+++|...++|- =|.     .++-+.++++|.+      ...-
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G--------~Id~fNmQSGi~r~sf~~~~a-----h~~~V~gla~D~~------n~~~  508 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKG--------TIDRFNMQSGIHRKSFGDSPA-----HKGEVTGLAVDGT------NRLL  508 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCC--------eEEEEEcccCeeecccccCcc-----ccCceeEEEecCC------CceE
Confidence            36788888999998887766666        78999999999988883 122     5666778888753      3345


Q ss_pred             EeeCCCCeEEEEEccCCc---eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731          205 IADSGHNHIVVYNYRTND---SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL  281 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~---~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~  281 (494)
                      ||=...+-+-.||+.++-   .||+.                                               .|-...+
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~~l~l~-----------------------------------------------~~~~~iv  541 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKKSLRLG-----------------------------------------------SSITGIV  541 (910)
T ss_pred             EEccCcceEEEEecCCcceeeeeccC-----------------------------------------------CCcceee
Confidence            555555667777776655   22221                                               1222233


Q ss_pred             EEecC-------CCCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC
Q psy731          282 YIADS-------GHNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA  353 (494)
Q Consensus       282 YI~D~-------~~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls  353 (494)
                      |.-++       ....|+|||..|.+.-|-.- ++                    +-|.-++.||+    +|||--.+|-
T Consensus       542 ~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~--------------------nritd~~FS~D----grWlisasmD  597 (910)
T KOG1539|consen  542 YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG--------------------NRITDMTFSPD----GRWLISASMD  597 (910)
T ss_pred             eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc--------------------cceeeeEeCCC----CcEEEEeecC
Confidence            33222       35689999998877655421 11                    11666999998    4999999995


Q ss_pred             Cc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceee
Q psy731          354 ST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGL  431 (494)
Q Consensus       354 s~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~  431 (494)
                      |+ +.|.++|..|-|.=+-            +    ..+..+.+.| +| .|--+-+.+++|+-|.-..  -|...+++.
T Consensus       598 ~tIr~wDlpt~~lID~~~v------------d----~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks--lF~~vs~r~  658 (910)
T KOG1539|consen  598 STIRTWDLPTGTLIDGLLV------------D----SPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS--LFKSVSTRA  658 (910)
T ss_pred             CcEEEEeccCcceeeeEec------------C----CcceeeEECC-CCCEEEEEEecCceEEEEEchh--Hheeccccc
Confidence            55 9999999999664321            1    2367788884 55 7777788899999999877  676555554


Q ss_pred             eeec
Q psy731          432 VAED  435 (494)
Q Consensus       432 v~~d  435 (494)
                      +..|
T Consensus       659 ~~~~  662 (910)
T KOG1539|consen  659 IPAD  662 (910)
T ss_pred             cCcc
Confidence            4443

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.70  E-value=0.87  Score=51.34  Aligned_cols=120  Identities=18%  Similarity=0.262  Sum_probs=72.6

Q ss_pred             eeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC---CCcC-ccccccceEEecccCCCCCCCeEEeeCCCCeEEEe
Q psy731          331 IHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN---RSLD-FSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYA  406 (494)
Q Consensus       331 i~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~---~~~~-~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~  406 (494)
                      -.|+++|||    ++++|-.-..|...--|+++-+++   ..+. .+.+..++++ |. |  +  --.++| .+|+.|.+
T Consensus       323 PHGV~vSPD----GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-Gl-G--P--LHTaFD-g~G~ayts  391 (635)
T PRK02888        323 PHGVNTSPD----GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GL-G--P--LHTAFD-GRGNAYTT  391 (635)
T ss_pred             ccceEECCC----CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CC-C--c--ceEEEC-CCCCEEEe
Confidence            567999998    489999888888777777776653   2221 2223344443 42 2  2  345789 78999999


Q ss_pred             ccCCCeEEEEeCCCCc-cccccceeeeeecCCeEec-ccceEE------cCCceEEEEecCchh
Q psy731          407 LLVKSGVGCWNTFRGE-EYNEKSMGLVAEDNATLIY-PSDIRV------DRTGVLWVLSNKLPV  462 (494)
Q Consensus       407 ~~~~~aI~~w~~~~~~-~~~~~~~~~v~~d~~~l~~-pd~~~i------d~~g~Lwvlsnrl~~  462 (494)
                      +.-.++|..||.++.. .|+-+...-|.+- -...| |-.+..      +.+|.-.|.-|++-+
T Consensus       392 lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k-~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~sk  454 (635)
T PRK02888        392 LFLDSQIVKWNIEAAIRAYKGEKVDPIVQK-LDVHYQPGHNHASMGETKEADGKWLVSLNKFSK  454 (635)
T ss_pred             EeecceeEEEehHHHHHHhccccCCcceec-ccCCCccceeeecCCCcCCCCCCEEEEcccccc
Confidence            9999999999987510 1222222222211 11111 223333      678865566788764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.65  E-value=2.1  Score=40.75  Aligned_cols=58  Identities=17%  Similarity=0.269  Sum_probs=43.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHII  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv  226 (494)
                      .|.++|+++++++-++.+.++    ..+.....+.       .++++|++ +..+.|+.+|..+|+ .|++
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~~----~~~~~~~~~~-------~~~~v~~~-~~~~~l~~~d~~tG~~~W~~   62 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGPG----IGGPVATAVP-------DGGRVYVA-SGDGNLYALDAKTGKVLWRF   62 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSSS----CSSEEETEEE-------ETTEEEEE-ETTSEEEEEETTTSEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCC----CCCccceEEE-------eCCEEEEE-cCCCEEEEEECCCCCEEEEe
Confidence            688999999999999987441    2333333333       37889999 477899999997777 6777

...

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.52  E-value=1.3  Score=47.28  Aligned_cols=87  Identities=26%  Similarity=0.267  Sum_probs=48.6

Q ss_pred             CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeee-cCCeEe-cccceEE----cCCceEEEEe---c
Q psy731          388 GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAE-DNATLI-YPSDIRV----DRTGVLWVLS---N  458 (494)
Q Consensus       388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~-d~~~l~-~pd~~~i----d~~g~Lwvls---n  458 (494)
                      .+|+-|+++|.++|.||+++-. -+|++++.+-  .-. ..-.++.. +.+.|. =..||.+    +.+|||.+.+   |
T Consensus       207 ~sQ~EGCVVDDe~g~LYvgEE~-~GIW~y~Aep--~~~-~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  207 GSQPEGCVVDDETGRLYVGEED-VGIWRYDAEP--EGG-NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             SS-EEEEEEETTTTEEEEEETT-TEEEEEESSC--CC--S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             CCcceEEEEecccCCEEEecCc-cEEEEEecCC--CCC-CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence            3689999999999999999876 5899998762  110 11122322 212221 1345565    3456888876   5


Q ss_pred             CchhhhcCCCCCCcccEEEE
Q psy731          459 KLPVFLYSKLKPEDINVRIF  478 (494)
Q Consensus       459 rl~~~~~~~~~~~~~nfrI~  478 (494)
                      .+..|-....+.-...|+|-
T Consensus       283 sf~Vy~r~~~~~~~g~f~i~  302 (381)
T PF02333_consen  283 SFAVYDREGPNAYVGSFRIG  302 (381)
T ss_dssp             EEEEEESSTT--EEEEEEEE
T ss_pred             eEEEEecCCCCcccceEEec
Confidence            56666533333334566664

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.49  E-value=0.059  Score=56.35  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=57.5

Q ss_pred             CCCeEEEE-eCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEE
Q psy731          136 PCDRLWAL-DSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIV  214 (494)
Q Consensus       136 ~~~~Lwvl-D~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iI  214 (494)
                      ..+||+|| +.|....-...+-+|++||++|++.++|++++..        ..+|.|-    +.+...+|.++.+...|.
T Consensus       248 ~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~--------~~Si~Vs----qd~~P~L~~~~~~~~~l~  315 (342)
T PF06433_consen  248 ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP--------IDSIAVS----QDDKPLLYALSAGDGTLD  315 (342)
T ss_dssp             TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE--------ESEEEEE----SSSS-EEEEEETTTTEEE
T ss_pred             ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc--------cceEEEc----cCCCcEEEEEcCCCCeEE
Confidence            68899998 5554322234556999999999999999998761        3356663    457889999999999999


Q ss_pred             EEEccCCceeEE
Q psy731          215 VYNYRTNDSHII  226 (494)
Q Consensus       215 Vyd~~~~~~~rv  226 (494)
                      |||..+|+.-|.
T Consensus       316 v~D~~tGk~~~~  327 (342)
T PF06433_consen  316 VYDAATGKLVRS  327 (342)
T ss_dssp             EEETTT--EEEE
T ss_pred             EEeCcCCcEEee
Confidence            999999988776

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1520|consensus

Probab=95.45  E-value=0.46  Score=50.28  Aligned_cols=148  Identities=18%  Similarity=0.242  Sum_probs=82.6

Q ss_pred             EEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731          202 FLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL  281 (494)
Q Consensus       202 ~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~  281 (494)
                      -+||+|+- .+|.+.+.+.+.+-.+..+                          ..-++-.+++++.||.      ++-+
T Consensus       128 dL~VaDAY-lGL~~V~p~g~~a~~l~~~--------------------------~~G~~~kf~N~ldI~~------~g~v  174 (376)
T KOG1520|consen  128 DLYVADAY-LGLLKVGPEGGLAELLADE--------------------------AEGKPFKFLNDLDIDP------EGVV  174 (376)
T ss_pred             eEEEEecc-eeeEEECCCCCcceecccc--------------------------ccCeeeeecCceeEcC------CCeE
Confidence            56888875 5788889998887666221                          1112334667777873      5789


Q ss_pred             EEecCCC-CeE--EEEEcCCC-cEEEEecCCcccCCCCcceE--EcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCC
Q psy731          282 YIADSGH-NHI--VVYNYRTN-DSHIIHHNYLHFDPLFGDFT--IGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAS  354 (494)
Q Consensus       282 YI~D~~~-~gl--iVydl~~~-~swrv~~~~~~~dP~~~~~~--v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss  354 (494)
                      |++|+.. +..  +++++-.+ .+=    +.|++||.--.-+  .+|..|     .+|+||||++   +-.|+- ++|+-
T Consensus       175 yFTDSSsk~~~rd~~~a~l~g~~~G----Rl~~YD~~tK~~~VLld~L~F-----~NGlaLS~d~---sfvl~~Et~~~r  242 (376)
T KOG1520|consen  175 YFTDSSSKYDRRDFVFAALEGDPTG----RLFRYDPSTKVTKVLLDGLYF-----PNGLALSPDG---SFVLVAETTTAR  242 (376)
T ss_pred             EEeccccccchhheEEeeecCCCcc----ceEEecCcccchhhhhhcccc-----cccccCCCCC---CEEEEEeeccce
Confidence            9999874 222  33333322 221    2456666543222  244444     6889999973   333443 34433


Q ss_pred             cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEec
Q psy731          355 TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYAL  407 (494)
Q Consensus       355 ~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~  407 (494)
                      -+-|.|+..--     ..+      +..- .|.++-.+-+-.| ++|...++.
T Consensus       243 i~rywi~g~k~-----gt~------EvFa-~~LPG~PDNIR~~-~~G~fWVal  282 (376)
T KOG1520|consen  243 IKRYWIKGPKA-----GTS------EVFA-EGLPGYPDNIRRD-STGHFWVAL  282 (376)
T ss_pred             eeeeEecCCcc-----Cch------hhHh-hcCCCCCcceeEC-CCCCEEEEE
Confidence            35555543211     111      1111 2224556778888 888887777

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=95.22  E-value=0.046  Score=46.55  Aligned_cols=55  Identities=11%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             eEEeeCCCCeEEEeccCC-----------------CeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EE
Q psy731          393 ASSLDEETGVIFYALLVK-----------------SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LW  454 (494)
Q Consensus       393 g~~~D~~~G~ly~~~~~~-----------------~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lw  454 (494)
                      ++++++++|.|||++.+.                 ..+.+|||.++      ...+|..   .|.||+|+.+.+|+. |.
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~------~~~vl~~---~L~fpNGVals~d~~~vl   72 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTK------ETTVLLD---GLYFPNGVALSPDESFVL   72 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTT------EEEEEEE---EESSEEEEEE-TTSSEEE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCC------eEEEehh---CCCccCeEEEcCCCCEEE
Confidence            578884459999998753                 46899999883      3456654   499999999999886 55


Q ss_pred             EE
Q psy731          455 VL  456 (494)
Q Consensus       455 vl  456 (494)
                      |.
T Consensus        73 v~   74 (89)
T PF03088_consen   73 VA   74 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.62  E-value=1.3  Score=46.63  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=46.8

Q ss_pred             CCeEEeeCCCCeEEEeccCC-------------------CeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCc
Q psy731          391 SGASSLDEETGVIFYALLVK-------------------SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTG  451 (494)
Q Consensus       391 s~g~~~D~~~G~ly~~~~~~-------------------~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g  451 (494)
                      ..+++++ .+|.||++.-..                   .+|.+++++++      .+++++.   .++-|-|+.++++|
T Consensus       126 ~~~l~~g-pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~------~~e~~a~---G~rnp~Gl~~d~~G  195 (367)
T TIGR02604       126 LNSLAWG-PDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG------KLRVVAH---GFQNPYGHSVDSWG  195 (367)
T ss_pred             ccCceEC-CCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCC------eEEEEec---CcCCCccceECCCC
Confidence            5689999 689999977632                   46899999883      3566664   37899999999999


Q ss_pred             eEEEEecC
Q psy731          452 VLWVLSNK  459 (494)
Q Consensus       452 ~Lwvlsnr  459 (494)
                      .||++.|.
T Consensus       196 ~l~~tdn~  203 (367)
T TIGR02604       196 DVFFCDND  203 (367)
T ss_pred             CEEEEccC
Confidence            99998763

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1520|consensus

Probab=94.50  E-value=0.57  Score=49.59  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=106.7

Q ss_pred             ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731          262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR  341 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~  341 (494)
                      .+.-+|+.+..     .+-+||+| ...||.+.+..++.+=.+.            =.++|++|.+.++   +.+++.  
T Consensus       115 GRPLGl~f~~~-----ggdL~VaD-AYlGL~~V~p~g~~a~~l~------------~~~~G~~~kf~N~---ldI~~~--  171 (376)
T KOG1520|consen  115 GRPLGIRFDKK-----GGDLYVAD-AYLGLLKVGPEGGLAELLA------------DEAEGKPFKFLND---LDIDPE--  171 (376)
T ss_pred             CCcceEEeccC-----CCeEEEEe-cceeeEEECCCCCcceecc------------ccccCeeeeecCc---eeEcCC--
Confidence            45667888763     34799999 5789999999998821111            1358889888655   778752  


Q ss_pred             CCceeEEEeeCCCcceE-eeechhhcCCC---c-CccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEE
Q psy731          342 DNFRVMYFHPLASTTEF-AVTTKVLQNRS---L-DFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCW  416 (494)
Q Consensus       342 ~g~r~LYf~plss~~ly-~V~T~~L~~~~---~-~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w  416 (494)
                         ..+||.--|++.-. .+--++|..+.   + .-+...+..+.+=+.  ..-+.|+++.++...+-+++.....|.++
T Consensus       172 ---g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~--L~F~NGlaLS~d~sfvl~~Et~~~ri~ry  246 (376)
T KOG1520|consen  172 ---GVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDG--LYFPNGLALSPDGSFVLVAETTTARIKRY  246 (376)
T ss_pred             ---CeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhc--ccccccccCCCCCCEEEEEeeccceeeee
Confidence               49999888874211 12222332211   1 001112334444432  35577899987777889999999999988


Q ss_pred             eCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          417 NTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       417 ~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      -..+  +- ..+.++.+++-+  -+||-++.+.+|..||..
T Consensus       247 wi~g--~k-~gt~EvFa~~LP--G~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  247 WIKG--PK-AGTSEVFAEGLP--GYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             EecC--Cc-cCchhhHhhcCC--CCCcceeECCCCCEEEEE
Confidence            7776  31 123477777534  489999999999999985

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=94.08  E-value=0.26  Score=42.01  Aligned_cols=70  Identities=20%  Similarity=0.420  Sum_probs=47.1

Q ss_pred             cceEEEeecCCCCCcEEEEeeCCC-----------------CeEEEEEccCCceeEEecCccccCCCCCccccCCcccee
Q psy731          187 SNMVVDVTSANCDNAFLYIADSGH-----------------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEF  249 (494)
Q Consensus       187 ~d~vVD~~~~~c~~~~vYItDs~~-----------------~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~  249 (494)
                      ||+.|+-     +.+.||+||+..                 +.|+.||..+++..-+-                      
T Consensus         1 ndldv~~-----~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~----------------------   53 (89)
T PF03088_consen    1 NDLDVDQ-----DTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL----------------------   53 (89)
T ss_dssp             -EEEE-T-----TT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE----------------------
T ss_pred             CceeEec-----CCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh----------------------
Confidence            4566652     349999999943                 47999999999886661                      


Q ss_pred             eeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731          250 FQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR  297 (494)
Q Consensus       250 f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~  297 (494)
                               ..-.+.++|++..     ++.|+.|+..+.+.|..|=++
T Consensus        54 ---------~~L~fpNGVals~-----d~~~vlv~Et~~~Ri~rywl~   87 (89)
T PF03088_consen   54 ---------DGLYFPNGVALSP-----DESFVLVAETGRYRILRYWLK   87 (89)
T ss_dssp             ---------EEESSEEEEEE-T-----TSSEEEEEEGGGTEEEEEESS
T ss_pred             ---------hCCCccCeEEEcC-----CCCEEEEEeccCceEEEEEEe
Confidence                     1123467888874     578999999988888888554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.03  E-value=7.2  Score=40.37  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=38.6

Q ss_pred             CCCEEEEEECCCCcEEEEEEcCCCccccccCCccceE-EEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731          154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV-VDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v-VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv  226 (494)
                      .||.|+-+++ +|+++|+++|+.         +.|+- |.+.    +++..-|+|-..++|.++-++.++....
T Consensus       106 ~p~~iVElt~-~GdlirtiPL~g---------~~DpE~Ieyi----g~n~fvi~dER~~~l~~~~vd~~t~~~~  165 (316)
T COG3204         106 KPAAIVELTK-EGDLIRTIPLTG---------FSDPETIEYI----GGNQFVIVDERDRALYLFTVDADTTVIS  165 (316)
T ss_pred             CCceEEEEec-CCceEEEecccc---------cCChhHeEEe----cCCEEEEEehhcceEEEEEEcCCccEEe
Confidence            4678887775 789999998866         22222 2221    3444456888888888887777765444

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.79  E-value=0.13  Score=37.47  Aligned_cols=41  Identities=24%  Similarity=0.255  Sum_probs=35.4

Q ss_pred             CeEEEeccCCC-eEEEEeCCCCccccccceeeeeecCCeEecccceEEcC
Q psy731          401 GVIFYALLVKS-GVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDR  449 (494)
Q Consensus       401 G~ly~~~~~~~-aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~  449 (494)
                      |.||.++...+ .|.+-+.++      .+.++|+++  .|.+|.|+.+|.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dG------s~~~~vi~~--~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDG------SNRRTVISD--DLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTS------TSEEEEEES--STSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCC------CCeEEEEEC--CCCCcCEEEECC
Confidence            68999999999 999999998      367888875  389999999974

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=93.77  E-value=11  Score=40.25  Aligned_cols=177  Identities=9%  Similarity=0.079  Sum_probs=90.2

Q ss_pred             CCcEEEEeeCCC-CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731          199 DNAFLYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       199 ~~~~vYItDs~~-~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      ++..+|+++... ..|.++|+.+|...++....-                               ....+.+.  +  -+
T Consensus       215 g~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-------------------------------~~~~~~~S--p--DG  259 (433)
T PRK04922        215 GKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-------------------------------INGAPSFS--P--DG  259 (433)
T ss_pred             CCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-------------------------------CccCceEC--C--CC
Confidence            567788876543 569999999998877732100                               00011221  1  02


Q ss_pred             CcEEEEecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeC-CC-
Q psy731          278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPL-AS-  354 (494)
Q Consensus       278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pl-ss-  354 (494)
                      +..+|..+.. ...|.++|+++++..++.+....                    ....+.||+    +++|+|..- .+ 
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~--------------------~~~~~~spD----G~~l~f~sd~~g~  315 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGI--------------------DTEPTWAPD----GKSIYFTSDRGGR  315 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCeEECccCCCC--------------------ccceEECCC----CCEEEEEECCCCC
Confidence            3344554433 35799999999887766543110                    112466776    367777542 22 


Q ss_pred             cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC--CCeEEEEeCCCCccccccceeee
Q psy731          355 TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV--KSGVGCWNTFRGEEYNEKSMGLV  432 (494)
Q Consensus       355 ~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~~~~~~v  432 (494)
                      ..+|.++.+   ...     . ..+..-|.     .....+..|....|+|+...  ...|..||..+|.      ...+
T Consensus       316 ~~iy~~dl~---~g~-----~-~~lt~~g~-----~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~------~~~L  375 (433)
T PRK04922        316 PQIYRVAAS---GGS-----A-ERLTFQGN-----YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS------VRTL  375 (433)
T ss_pred             ceEEEEECC---CCC-----e-EEeecCCC-----CccCEEECCCCCEEEEEECCCCceeEEEEECCCCC------eEEC
Confidence            256666421   111     0 11111111     12235666433466665433  2369999987741      2334


Q ss_pred             eecCCeEecccceEEcCCce-EEEEec
Q psy731          433 AEDNATLIYPSDIRVDRTGV-LWVLSN  458 (494)
Q Consensus       433 ~~d~~~l~~pd~~~id~~g~-Lwvlsn  458 (494)
                      ... .   +.....+.++|. |++.++
T Consensus       376 t~~-~---~~~~p~~spdG~~i~~~s~  398 (433)
T PRK04922        376 TPG-S---LDESPSFAPNGSMVLYATR  398 (433)
T ss_pred             CCC-C---CCCCceECCCCCEEEEEEe
Confidence            332 1   223445666664 555554

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=93.68  E-value=1.6  Score=44.39  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=23.8

Q ss_pred             CCCCCeEEeeCCCCeEEEeccCCCeEEEEeC
Q psy731          388 GSQSGASSLDEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      ++|+.||..|.++|+||.++- .-||+.++.
T Consensus       204 ~tQTEG~VaDdEtG~LYIaeE-dvaiWK~~A  233 (364)
T COG4247         204 PTQTEGMVADDETGFLYIAEE-DVAIWKYEA  233 (364)
T ss_pred             CCcccceeeccccceEEEeec-cceeeeccc
Confidence            479999999989999999875 456666654

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.63  E-value=11  Score=39.66  Aligned_cols=115  Identities=15%  Similarity=0.242  Sum_probs=70.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccc---cCCc-cceEEEeecCCCCCcEEEEeeCCCCe
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTE---ESKF-SNMVVDVTSANCDNAFLYIADSGHNH  212 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~---~S~l-~d~vVD~~~~~c~~~~vYItDs~~~~  212 (494)
                      .++|++.+...         .|.++|.+|++++=+.+++.+.-...   ...+ ..+++       .++.+|+.+. .+.
T Consensus        69 ~~~vy~~~~~g---------~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~v~v~~~-~g~  131 (394)
T PRK11138         69 YNKVYAADRAG---------LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-------AGGKVYIGSE-KGQ  131 (394)
T ss_pred             CCEEEEECCCC---------eEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-------ECCEEEEEcC-CCE
Confidence            66888876432         68999999999988887765100000   0011 23455       3578999874 457


Q ss_pred             EEEEEccCCc-eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeE
Q psy731          213 IVVYNYRTND-SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHI  291 (494)
Q Consensus       213 iIVyd~~~~~-~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gl  291 (494)
                      |..+|.++|+ .|+..-.                               +......++.       +..+|+.. ....|
T Consensus       132 l~ald~~tG~~~W~~~~~-------------------------------~~~~ssP~v~-------~~~v~v~~-~~g~l  172 (394)
T PRK11138        132 VYALNAEDGEVAWQTKVA-------------------------------GEALSRPVVS-------DGLVLVHT-SNGML  172 (394)
T ss_pred             EEEEECCCCCCcccccCC-------------------------------CceecCCEEE-------CCEEEEEC-CCCEE
Confidence            9999998876 6776210                               0011222332       24567764 34568


Q ss_pred             EEEEcCCCc-EEEEecC
Q psy731          292 VVYNYRTND-SHIIHHN  307 (494)
Q Consensus       292 iVydl~~~~-swrv~~~  307 (494)
                      +.+|.++++ .|++...
T Consensus       173 ~ald~~tG~~~W~~~~~  189 (394)
T PRK11138        173 QALNESDGAVKWTVNLD  189 (394)
T ss_pred             EEEEccCCCEeeeecCC
Confidence            999998766 6888653

>PRK00178 tolB translocation protein TolB; Provisional

Probab=93.39  E-value=12  Score=39.58  Aligned_cols=73  Identities=11%  Similarity=0.113  Sum_probs=44.5

Q ss_pred             CCcEEEEeeCC-CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731          199 DNAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       199 ~~~~vYItDs~-~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      ++..+|+++.. ...|.++|+.+|...++.+..-                               ....+...  + + +
T Consensus       210 G~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-------------------------------~~~~~~~S--p-D-G  254 (430)
T PRK00178        210 GKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-------------------------------LNGAPAWS--P-D-G  254 (430)
T ss_pred             CCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-------------------------------CcCCeEEC--C-C-C
Confidence            56677888764 4579999999998887732000                               00001111  1 0 2


Q ss_pred             CcEEEEecCC-CCeEEEEEcCCCcEEEEec
Q psy731          278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~  306 (494)
                      +..+|..+.. ...|.++|+++++..++.+
T Consensus       255 ~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~  284 (430)
T PRK00178        255 SKLAFVLSKDGNPEIYVMDLASRQLSRVTN  284 (430)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEEccc
Confidence            3455555533 3579999999998877754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=93.31  E-value=7.5  Score=41.57  Aligned_cols=31  Identities=16%  Similarity=0.268  Sum_probs=23.5

Q ss_pred             CCCCcEEEEeeC-CCCeEEEEEccCCceeEEe
Q psy731          197 NCDNAFLYIADS-GHNHIVVYNYRTNDSHIIH  227 (494)
Q Consensus       197 ~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~  227 (494)
                      .+++..+|.+|. +...|.++|+.++...++.
T Consensus       299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt  330 (435)
T PRK05137        299 PDGSQIVFESDRSGSPQLYVMNADGSNPRRIS  330 (435)
T ss_pred             CCCCEEEEEECCCCCCeEEEEECCCCCeEEee
Confidence            345667788875 4467999999999888884

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=93.23  E-value=6.9  Score=36.14  Aligned_cols=202  Identities=12%  Similarity=0.174  Sum_probs=105.7

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      .|..||+.+++.++.+....       +.+..+...      .+..+.++-...+.|.+||+.+++.... ..       
T Consensus        74 ~i~i~~~~~~~~~~~~~~~~-------~~i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------  133 (289)
T cd00200          74 TIRLWDLETGECVRTLTGHT-------SYVSSVAFS------PDGRILSSSSRDKTIKVWDVETGKCLTTLRG-------  133 (289)
T ss_pred             eEEEEEcCcccceEEEeccC-------CcEEEEEEc------CCCCEEEEecCCCeEEEEECCCcEEEEEecc-------
Confidence            57788888776666554222       233333332      1234445555678899999986654333 10       


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                              .......+.+..     ++.+++... .+..|.+||+++++..+....        
T Consensus       134 ------------------------~~~~i~~~~~~~-----~~~~l~~~~-~~~~i~i~d~~~~~~~~~~~~--------  175 (289)
T cd00200         134 ------------------------HTDWVNSVAFSP-----DGTFVASSS-QDGTIKLWDLRTGKCVATLTG--------  175 (289)
T ss_pred             ------------------------CCCcEEEEEEcC-----cCCEEEEEc-CCCcEEEEEccccccceeEec--------
Confidence                                    011233344432     134555543 355688999886553222110        


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEe-cccCCCCCCCe
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVM-GSRGTGSQSGA  393 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~-G~~G~~~qs~g  393 (494)
                                 -...+..++++|+    ++.+++....+. .+|.+.+..+             +..+ +..   .....
T Consensus       176 -----------~~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d~~~~~~-------------~~~~~~~~---~~i~~  224 (289)
T cd00200         176 -----------HTGEVNSVAFSPD----GEKLLSSSSDGTIKLWDLSTGKC-------------LGTLRGHE---NGVNS  224 (289)
T ss_pred             -----------CccccceEEECCC----cCEEEEecCCCcEEEEECCCCce-------------ecchhhcC---CceEE
Confidence                       0123666888875    256777655442 4444433111             1111 222   23456


Q ss_pred             EEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEE
Q psy731          394 SSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVL  456 (494)
Q Consensus       394 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvl  456 (494)
                      +..+ .++.++++.-....|..|+..++.+     ...+... .  ..+.++.+.+++.+.++
T Consensus       225 ~~~~-~~~~~~~~~~~~~~i~i~~~~~~~~-----~~~~~~~-~--~~i~~~~~~~~~~~l~~  278 (289)
T cd00200         225 VAFS-PDGYLLASGSEDGTIRVWDLRTGEC-----VQTLSGH-T--NSVTSLAWSPDGKRLAS  278 (289)
T ss_pred             EEEc-CCCcEEEEEcCCCcEEEEEcCCcee-----EEEcccc-C--CcEEEEEECCCCCEEEE
Confidence            7888 4588888777789999999875312     1222211 1  13456667666544443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=93.00  E-value=9.3  Score=40.88  Aligned_cols=29  Identities=10%  Similarity=0.188  Sum_probs=22.0

Q ss_pred             CCCcEEEEeeCC-CCeEEEEEccCCceeEE
Q psy731          198 CDNAFLYIADSG-HNHIVVYNYRTNDSHII  226 (494)
Q Consensus       198 c~~~~vYItDs~-~~~iIVyd~~~~~~~rv  226 (494)
                      +++..+|.+|.. ...|.++|+.++...|+
T Consensus       302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~~l  331 (433)
T PRK04922        302 DGKSIYFTSDRGGRPQIYRVAASGGSAERL  331 (433)
T ss_pred             CCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            356677788754 45799999999888777

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.73  E-value=2.5  Score=45.88  Aligned_cols=154  Identities=16%  Similarity=0.214  Sum_probs=73.6

Q ss_pred             CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeec-CCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCcccc
Q psy731          155 PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTS-ANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHF  233 (494)
Q Consensus       155 ~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~-~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~  233 (494)
                      .-.|+.||+++.+++++++|+++     .    -+...+|- -+....+.|+.=+-...|..+=-+++-.|....----|
T Consensus       221 G~~l~vWD~~~r~~~Q~idLg~~-----g----~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip  291 (461)
T PF05694_consen  221 GHSLHVWDWSTRKLLQTIDLGEE-----G----QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP  291 (461)
T ss_dssp             --EEEEEETTTTEEEEEEES-TT-----E----EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred             cCeEEEEECCCCcEeeEEecCCC-----C----CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence            45899999999999999999972     1    12334441 34467888888777777777766556667773311101


Q ss_pred             CCCCCccccCCccceeeeecccccccc----cccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCc
Q psy731          234 DPLFGDFTIGGEYSEFFQLKEKTDYTE----ESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYL  309 (494)
Q Consensus       234 dp~~~~f~i~g~~~~~f~l~~~~~~~~----~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~  309 (494)
                      .+          .-|-..|+  +.++.    ..+.++|.+-.     ++.|+|++.-...-+--||..+-.-=|..    
T Consensus       292 ~~----------~v~~~~lp--~ml~~~~~~P~LitDI~iSl-----DDrfLYvs~W~~GdvrqYDISDP~~Pkl~----  350 (461)
T PF05694_consen  292 AK----------KVEGWILP--EMLKPFGAVPPLITDILISL-----DDRFLYVSNWLHGDVRQYDISDPFNPKLV----  350 (461)
T ss_dssp             -E----------E--SS-----GGGGGG-EE------EEE-T-----TS-EEEEEETTTTEEEEEE-SSTTS-EEE----
T ss_pred             Cc----------ccCccccc--ccccccccCCCceEeEEEcc-----CCCEEEEEcccCCcEEEEecCCCCCCcEE----
Confidence            10          00000111  01111    13445555543     68999999877777889998864322211    


Q ss_pred             ccCCCCcceEEc------------CEEeeeecceeeeeeccCCCCCceeEEEe
Q psy731          310 HFDPLFGDFTIG------------GVNFQWQTGIHGMSLSPLTRDNFRVMYFH  350 (494)
Q Consensus       310 ~~dP~~~~~~v~------------G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~  350 (494)
                            ++..++            |++  +..|-..|.||-|    ++.||++
T Consensus       351 ------gqv~lGG~~~~~~~~~v~g~~--l~GgPqMvqlS~D----GkRlYvT  391 (461)
T PF05694_consen  351 ------GQVFLGGSIRKGDHPVVKGKR--LRGGPQMVQLSLD----GKRLYVT  391 (461)
T ss_dssp             ------EEEE-BTTTT-B--TTS--------S----EEE-TT----SSEEEEE
T ss_pred             ------eEEEECcEeccCCCccccccc--cCCCCCeEEEccC----CeEEEEE
Confidence                  222222            333  3356777999976    3899993

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0291|consensus

Probab=92.71  E-value=23  Score=40.84  Aligned_cols=244  Identities=15%  Similarity=0.197  Sum_probs=147.8

Q ss_pred             cccccc----c-CCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceE
Q psy731          116 WESNVR----E-ARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMV  190 (494)
Q Consensus       116 ~~~n~~----~-~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~v  190 (494)
                      |+|+..    . -.++-++..+..-++|.+.+-  |..+ +     |+-+||...+--+.+|.=+       +|...-+.
T Consensus       335 weWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaT--G~eD-g-----KVKvWn~~SgfC~vTFteH-------ts~Vt~v~  399 (893)
T KOG0291|consen  335 WEWQSESYVLKQQGHSDRITSLAYSPDGQLIAT--GAED-G-----KVKVWNTQSGFCFVTFTEH-------TSGVTAVQ  399 (893)
T ss_pred             EEeeccceeeeccccccceeeEEECCCCcEEEe--ccCC-C-----cEEEEeccCceEEEEeccC-------CCceEEEE
Confidence            778764    1 224666666777778877663  4432 1     7889999999988777533       44444444


Q ss_pred             EEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEe
Q psy731          191 VDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVD  270 (494)
Q Consensus       191 VD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD  270 (494)
                      +-      .++++-++=+-.+.+=.||+.+.+-.|=                       ||-+      +...|.-++||
T Consensus       400 f~------~~g~~llssSLDGtVRAwDlkRYrNfRT-----------------------ft~P------~p~QfscvavD  444 (893)
T KOG0291|consen  400 FT------ARGNVLLSSSLDGTVRAWDLKRYRNFRT-----------------------FTSP------EPIQFSCVAVD  444 (893)
T ss_pred             EE------ecCCEEEEeecCCeEEeeeecccceeee-----------------------ecCC------CceeeeEEEEc
Confidence            43      4677888888888888888888776665                       3333      33457888999


Q ss_pred             eecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEe--cC----CcccCCCCcce-------EE----------cCEEeee
Q psy731          271 VTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIH--HN----YLHFDPLFGDF-------TI----------GGVNFQW  327 (494)
Q Consensus       271 ~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~--~~----~~~~dP~~~~~-------~v----------~G~~f~~  327 (494)
                      ..     +-.+...+.....|.|||++||+---+.  |.    ...++|....+       ||          .-++++.
T Consensus       445 ~s-----GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i  519 (893)
T KOG0291|consen  445 PS-----GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI  519 (893)
T ss_pred             CC-----CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee
Confidence            53     4566677777899999999999988885  53    11233432211       11          1133444


Q ss_pred             ecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc---CCCc--Ccccccc-ceEEe-cccCCCCCCCeEEeeCC
Q psy731          328 QTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ---NRSL--DFSRSNF-DFKVM-GSRGTGSQSGASSLDEE  399 (494)
Q Consensus       328 ~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~---~~~~--~~~~~~~-~v~~~-G~~G~~~qs~g~~~D~~  399 (494)
                      .--+.+++.+|++    +.|-...|.|. ..|-+...+..   +...  ....... .+... ..+| +. -..+.+. .
T Consensus       520 ~sdvl~vsfrPdG----~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~-K~-Ftti~yS-a  592 (893)
T KOG0291|consen  520 RSDVLAVSFRPDG----KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG-KT-FTTICYS-A  592 (893)
T ss_pred             ccceeEEEEcCCC----CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccC-Cc-eEEEEEc-C
Confidence            4567888888874    66766666654 55555443332   1110  1111111 11111 1122 11 2345666 7


Q ss_pred             CCeEEEeccCCCeEEEEeCCCC
Q psy731          400 TGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       400 ~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +|...++--+.+.|-.++...+
T Consensus       593 DG~~IlAgG~sn~iCiY~v~~~  614 (893)
T KOG0291|consen  593 DGKCILAGGESNSICIYDVPEG  614 (893)
T ss_pred             CCCEEEecCCcccEEEEECchh
Confidence            8888888888888888888764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=92.64  E-value=16  Score=38.97  Aligned_cols=29  Identities=10%  Similarity=0.364  Sum_probs=23.1

Q ss_pred             CCcEEEEeeC-CCCeEEEEEccCCceeEEe
Q psy731          199 DNAFLYIADS-GHNHIVVYNYRTNDSHIIH  227 (494)
Q Consensus       199 ~~~~vYItDs-~~~~iIVyd~~~~~~~rv~  227 (494)
                      ++.-+|+++. +...|.++|+.+|...++.
T Consensus       213 G~~lay~s~~~g~~~i~~~dl~~g~~~~l~  242 (435)
T PRK05137        213 RQEITYMSYANGRPRVYLLDLETGQRELVG  242 (435)
T ss_pred             CCEEEEEEecCCCCEEEEEECCCCcEEEee
Confidence            5677888875 4468999999999887773

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=92.41  E-value=1.5  Score=45.41  Aligned_cols=79  Identities=19%  Similarity=0.323  Sum_probs=52.9

Q ss_pred             cCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccc
Q psy731          183 ESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEES  262 (494)
Q Consensus       183 ~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s  262 (494)
                      .+.++|++|       .+.|||+|| +..+|.++|..+...=+..          |.+++                  +.
T Consensus        86 ~~l~~Dv~v-------se~yvyvad-~ssGL~IvDIS~P~sP~~~----------~~lnt------------------~g  129 (370)
T COG5276          86 RDLFADVRV-------SEEYVYVAD-WSSGLRIVDISTPDSPTLI----------GFLNT------------------DG  129 (370)
T ss_pred             hhhhheeEe-------cccEEEEEc-CCCceEEEeccCCCCccee----------ccccC------------------Cc
Confidence            346777777       689999999 7788999998877664431          11111                  01


Q ss_pred             cceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEe
Q psy731          263 KFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIH  305 (494)
Q Consensus       263 ~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~  305 (494)
                      +-  --|++     ...+||++|. ++|++++|+.+-.+=.+.
T Consensus       130 ya--ygv~v-----sGn~aYVadl-ddgfLivdvsdpssP~la  164 (370)
T COG5276         130 YA--YGVYV-----SGNYAYVADL-DDGFLIVDVSDPSSPQLA  164 (370)
T ss_pred             eE--EEEEe-----cCCEEEEeec-cCcEEEEECCCCCCceee
Confidence            11  12444     3679999996 789999999876654443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=91.90  E-value=21  Score=38.48  Aligned_cols=31  Identities=10%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             CCCCcEEEEeeCCC-CeEEEEEccCCceeEEe
Q psy731          197 NCDNAFLYIADSGH-NHIVVYNYRTNDSHIIH  227 (494)
Q Consensus       197 ~c~~~~vYItDs~~-~~iIVyd~~~~~~~rv~  227 (494)
                      .+++..+|++|..+ ..|.++|+.+|...|+.
T Consensus       286 PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt  317 (419)
T PRK04043        286 EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV  317 (419)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCCeEeCc
Confidence            45677888888655 48999999999998883

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.87  E-value=9.2  Score=39.69  Aligned_cols=53  Identities=21%  Similarity=0.273  Sum_probs=38.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHII  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv  226 (494)
                      .|.++|+++++++-+..++.         ...+++       .++++|+++ ..+.|.++|.++|+ .|+.
T Consensus       252 ~l~a~d~~tG~~~W~~~~~~---------~~~p~~-------~~~~vyv~~-~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       252 RVAALDLRSGRVLWKRDASS---------YQGPAV-------DDNRLYVTD-ADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             EEEEEECCCCcEEEeeccCC---------ccCceE-------eCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence            68899999999887665432         234555       357899986 45789999999886 4655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=91.80  E-value=22  Score=38.50  Aligned_cols=105  Identities=10%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             CCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCceeEEecCccc
Q psy731          154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLH  232 (494)
Q Consensus       154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~rv~~~~~~  232 (494)
                      +.+.|..+|+.+++..+.-.++.        ....++.    ...++..+|.++.. ...|.++|+.++...++..+.. 
T Consensus       240 g~~~L~~~dl~tg~~~~lt~~~g--------~~~~~~w----SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~-  306 (448)
T PRK04792        240 RKAEIFVQDIYTQVREKVTSFPG--------INGAPRF----SPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRA-  306 (448)
T ss_pred             CCcEEEEEECCCCCeEEecCCCC--------CcCCeeE----CCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCC-
Confidence            34567777777765433222221        1112333    22345566665543 3469999999999888843211 


Q ss_pred             cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC-CCCeEEEEEcCCCcEEEEe
Q psy731          233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS-GHNHIVVYNYRTNDSHIIH  305 (494)
Q Consensus       233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~-~~~gliVydl~~~~swrv~  305 (494)
                                                    ....+...  +  .++..+|.++. +...|.++|+++++.-++.
T Consensus       307 ------------------------------~~~~p~wS--p--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        307 ------------------------------IDTEPSWH--P--DGKSLIFTSERGGKPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             ------------------------------CccceEEC--C--CCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence                                          00011111  1  12445666664 3467999999988876665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=91.59  E-value=21  Score=38.29  Aligned_cols=60  Identities=13%  Similarity=0.111  Sum_probs=36.6

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCceeEEe
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSHIIH  227 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~rv~  227 (494)
                      +.|..+|++++++.+.   ..     ..+....+..    ..+++..+|.+|.. ...|.++|+.++...+++
T Consensus       267 ~~I~~~d~~tg~~~~l---t~-----~~~~~~~~~w----SPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt  327 (429)
T PRK03629        267 LNLYVMDLASGQIRQV---TD-----GRSNNTEPTW----FPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT  327 (429)
T ss_pred             cEEEEEECCCCCEEEc---cC-----CCCCcCceEE----CCCCCEEEEEeCCCCCceEEEEECCCCCeEEee
Confidence            4566677777665431   11     2222233333    23466778999864 457999999999888873

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=91.55  E-value=13  Score=40.66  Aligned_cols=45  Identities=16%  Similarity=0.195  Sum_probs=29.5

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCC
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKE  176 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~  176 (494)
                      ++|...-+|....+++|||..-+..        +|.+++..+++......+|.
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G--------~I~~v~~~~~~~~~~~~l~~   71 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATG--------KILRVNPETGEVKVVFTLPE   71 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCC--------EEEEEeCCCCceeeeecCCc
Confidence            4677777888888889998875433        57777766554333334554

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=91.43  E-value=13  Score=35.24  Aligned_cols=196  Identities=15%  Similarity=0.103  Sum_probs=105.2

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEE
Q psy731          136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVV  215 (494)
Q Consensus       136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIV  215 (494)
                      ..++|++.+. .        ..|+++|+.|++++-++.++...       ...+.+       .++.+|+.... +.|+.
T Consensus        35 ~~~~v~~~~~-~--------~~l~~~d~~tG~~~W~~~~~~~~-------~~~~~~-------~~~~v~v~~~~-~~l~~   90 (238)
T PF13360_consen   35 DGGRVYVASG-D--------GNLYALDAKTGKVLWRFDLPGPI-------SGAPVV-------DGGRVYVGTSD-GSLYA   90 (238)
T ss_dssp             ETTEEEEEET-T--------SEEEEEETTTSEEEEEEECSSCG-------GSGEEE-------ETTEEEEEETT-SEEEE
T ss_pred             eCCEEEEEcC-C--------CEEEEEECCCCCEEEEeeccccc-------cceeee-------cccccccccce-eeeEe
Confidence            4678888852 2        28999999999999999986621       111344       35677887743 39999


Q ss_pred             EEccCCc-eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEE
Q psy731          216 YNYRTND-SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVY  294 (494)
Q Consensus       216 yd~~~~~-~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVy  294 (494)
                      +|..+|+ .|++.....                        +...   ......+...     +..+|+... ...|+.+
T Consensus        91 ~d~~tG~~~W~~~~~~~------------------------~~~~---~~~~~~~~~~-----~~~~~~~~~-~g~l~~~  137 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSS------------------------PPAG---VRSSSSPAVD-----GDRLYVGTS-SGKLVAL  137 (238)
T ss_dssp             EETTTSCEEEEEEE-SS------------------------CTCS---TB--SEEEEE-----TTEEEEEET-CSEEEEE
T ss_pred             cccCCcceeeeeccccc------------------------cccc---cccccCceEe-----cCEEEEEec-cCcEEEE
Confidence            9977665 566421110                        0000   1111222221     355677654 6789999


Q ss_pred             EcCCCcE-EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCcc
Q psy731          295 NYRTNDS-HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFS  373 (494)
Q Consensus       295 dl~~~~s-wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~  373 (494)
                      |.++++. |+..- ...  +...       ++.....+.+=.+..    + ..+|...-.+. ++++.   ++...    
T Consensus       138 d~~tG~~~w~~~~-~~~--~~~~-------~~~~~~~~~~~~~~~----~-~~v~~~~~~g~-~~~~d---~~tg~----  194 (238)
T PF13360_consen  138 DPKTGKLLWKYPV-GEP--RGSS-------PISSFSDINGSPVIS----D-GRVYVSSGDGR-VVAVD---LATGE----  194 (238)
T ss_dssp             ETTTTEEEEEEES-STT---SS---------EEEETTEEEEEECC----T-TEEEEECCTSS-EEEEE---TTTTE----
T ss_pred             ecCCCcEEEEeec-CCC--CCCc-------ceeeecccccceEEE----C-CEEEEEcCCCe-EEEEE---CCCCC----
Confidence            9998875 55533 111  1011       111111111222211    1 27888776663 44441   11111    


Q ss_pred             ccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          374 RSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       374 ~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                            +.+ ++-. ....+. .....+.||++. ....|.|||..+|
T Consensus       195 ------~~w-~~~~-~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG  232 (238)
T PF13360_consen  195 ------KLW-SKPI-SGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTG  232 (238)
T ss_dssp             ------EEE-EECS-S-ECEC-EECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred             ------EEE-EecC-CCccCC-ceeeCCEEEEEe-CCCEEEEEECCCC
Confidence                  112 2100 112221 233688999999 8999999999885

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=91.36  E-value=24  Score=38.15  Aligned_cols=73  Identities=11%  Similarity=0.071  Sum_probs=43.7

Q ss_pred             CCcEEEEeeCC-CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731          199 DNAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       199 ~~~~vYItDs~-~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      ++..+|+++.. ...|.++|+.+|...++.+..                             ..  .......  + + +
T Consensus       229 G~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-----------------------------g~--~~~~~wS--P-D-G  273 (448)
T PRK04792        229 GRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-----------------------------GI--NGAPRFS--P-D-G  273 (448)
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-----------------------------CC--cCCeeEC--C-C-C
Confidence            56677887653 457999999999887773200                             00  0011111  1 1 2


Q ss_pred             CcEEEEecCC-CCeEEEEEcCCCcEEEEec
Q psy731          278 DAFLYIADSG-HNHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       278 ~~~~YI~D~~-~~gliVydl~~~~swrv~~  306 (494)
                      +.++|..+.. ...|.++|+++++..++..
T Consensus       274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~  303 (448)
T PRK04792        274 KKLALVLSKDGQPEIYVVDIATKALTRITR  303 (448)
T ss_pred             CEEEEEEeCCCCeEEEEEECCCCCeEECcc
Confidence            3456655543 3469999999988777654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.45  E-value=4.3  Score=42.17  Aligned_cols=127  Identities=14%  Similarity=0.190  Sum_probs=64.2

Q ss_pred             ecceeeeeeccCCCCCceeEEEeeC-----CCcceEeeechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCC
Q psy731          328 QTGIHGMSLSPLTRDNFRVMYFHPL-----ASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETG  401 (494)
Q Consensus       328 ~~Gi~gIaLsp~~~~g~r~LYf~pl-----ss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G  401 (494)
                      ..|+.|||+.|+-.. +++||...-     .+....+|.--.+.+..........-++.+.. .+..-...+++++ .+|
T Consensus        48 ~~gllgia~~p~f~~-n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG  125 (331)
T PF07995_consen   48 ERGLLGIAFHPDFAS-NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDG  125 (331)
T ss_dssp             TBSEEEEEE-TTCCC-C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTS
T ss_pred             cCCcccceeccccCC-CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCC
Confidence            358999999985322 256666332     22233333333333331111111111222222 1112335678999 799


Q ss_pred             eEEEeccC-------------CCeEEEEeCCCCc----ccc---ccceeeeeecCCeEecccceEEcCC-ceEEEEecC
Q psy731          402 VIFYALLV-------------KSGVGCWNTFRGE----EYN---EKSMGLVAEDNATLIYPSDIRVDRT-GVLWVLSNK  459 (494)
Q Consensus       402 ~ly~~~~~-------------~~aI~~w~~~~~~----~~~---~~~~~~v~~d~~~l~~pd~~~id~~-g~Lwvlsnr  459 (494)
                      .||++.-.             ..+|.+.++++..    |+.   ....++.+..   |+=|-++.+|+. |.||+..|.
T Consensus       126 ~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~G---lRN~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  126 KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYG---LRNPFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE-----SEEEEEEEETTTTEEEEEEE-
T ss_pred             cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeC---CCccccEEEECCCCcEEEEccC
Confidence            99997432             4568899987621    110   0123455543   566788999998 999998643

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.23  E-value=15  Score=38.70  Aligned_cols=54  Identities=15%  Similarity=0.219  Sum_probs=38.7

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCc-eeEE
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTND-SHII  226 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~-~~rv  226 (494)
                      -.|+++|+.+++++-+..++.         ..++++       .++.+|+.+. .+.+..+|.++|+ .|+.
T Consensus       266 g~l~ald~~tG~~~W~~~~~~---------~~~~~~-------~~~~vy~~~~-~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        266 GNLVALDLRSGQIVWKREYGS---------VNDFAV-------DGGRIYLVDQ-NDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             CeEEEEECCCCCEEEeecCCC---------ccCcEE-------ECCEEEEEcC-CCeEEEEECCCCcEEEcc
Confidence            478899999999886655443         123444       3678999875 4679999999986 4665

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.05  E-value=1.3  Score=46.06  Aligned_cols=44  Identities=18%  Similarity=0.104  Sum_probs=34.9

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCC
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKE  176 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~  176 (494)
                      ++|.-..+.+- -+++||++|.|+.        ++..+|+.+|+....-.+|.
T Consensus       200 ~GLsmPhSPRW-hdgrLwvldsgtG--------ev~~vD~~~G~~e~Va~vpG  243 (335)
T TIGR03032       200 SGLSMPHSPRW-YQGKLWLLNSGRG--------ELGYVDPQAGKFQPVAFLPG  243 (335)
T ss_pred             cCccCCcCCcE-eCCeEEEEECCCC--------EEEEEcCCCCcEEEEEECCC
Confidence            44555555554 3689999999999        89999999999887777777

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=89.68  E-value=17  Score=33.55  Aligned_cols=195  Identities=16%  Similarity=0.219  Sum_probs=96.9

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+...+++++.+.-....        .+..||+.+++..+.+....       ..+..+...     ..+.+++++..
T Consensus        12 i~~~~~~~~~~~l~~~~~~g--------~i~i~~~~~~~~~~~~~~~~-------~~i~~~~~~-----~~~~~l~~~~~   71 (289)
T cd00200          12 VTCVAFSPDGKLLATGSGDG--------TIKVWDLETGELLRTLKGHT-------GPVRDVAAS-----ADGTYLASGSS   71 (289)
T ss_pred             EEEEEEcCCCCEEEEeecCc--------EEEEEEeeCCCcEEEEecCC-------cceeEEEEC-----CCCCEEEEEcC
Confidence            44555666655544433222        67778888877666554332       112222221     12245555543


Q ss_pred             CCCeEEEEEccCCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          209 GHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                       .+.|.+||+.+++.-+ +..                               .......+....     ++.+++.. ..
T Consensus        72 -~~~i~i~~~~~~~~~~~~~~-------------------------------~~~~i~~~~~~~-----~~~~~~~~-~~  113 (289)
T cd00200          72 -DKTIRLWDLETGECVRTLTG-------------------------------HTSYVSSVAFSP-----DGRILSSS-SR  113 (289)
T ss_pred             -CCeEEEEEcCcccceEEEec-------------------------------cCCcEEEEEEcC-----CCCEEEEe-cC
Confidence             6789999998863322 210                               001122233321     12343333 34


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-cceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-TTEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-~~ly~V~T~~L~  366 (494)
                      +..|.+||+.+++..+....                   ....+..++.+|+    ++.|+.....+ -.+|.+.+..+ 
T Consensus       114 ~~~i~~~~~~~~~~~~~~~~-------------------~~~~i~~~~~~~~----~~~l~~~~~~~~i~i~d~~~~~~-  169 (289)
T cd00200         114 DKTIKVWDVETGKCLTTLRG-------------------HTDWVNSVAFSPD----GTFVASSSQDGTIKLWDLRTGKC-  169 (289)
T ss_pred             CCeEEEEECCCcEEEEEecc-------------------CCCcEEEEEEcCc----CCEEEEEcCCCcEEEEEcccccc-
Confidence            66788999985543322210                   0123566777765    24555544222 24444432111 


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCC
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~  421 (494)
                               ...++  +..   .....+.++ .+| .++++.. ...|..||...+
T Consensus       170 ---------~~~~~--~~~---~~i~~~~~~-~~~~~l~~~~~-~~~i~i~d~~~~  209 (289)
T cd00200         170 ---------VATLT--GHT---GEVNSVAFS-PDGEKLLSSSS-DGTIKLWDLSTG  209 (289)
T ss_pred             ---------ceeEe--cCc---cccceEEEC-CCcCEEEEecC-CCcEEEEECCCC
Confidence                     11111  211   235567888 566 5555544 888999999863

>KOG4499|consensus

Probab=89.63  E-value=1.1  Score=44.99  Aligned_cols=77  Identities=14%  Similarity=0.248  Sum_probs=55.0

Q ss_pred             ccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEe--CCCCccccccceeeeee----cCCeEecccceEEcC
Q psy731          376 NFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWN--TFRGEEYNEKSMGLVAE----DNATLIYPSDIRVDR  449 (494)
Q Consensus       376 ~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~--~~~~~~~~~~~~~~v~~----d~~~l~~pd~~~id~  449 (494)
                      ..+++.+-+.  -..|.|++-|......||.+..+..|-.||  -.+|.-.+   -.+|..    .+..=..||||.||.
T Consensus       147 ~h~v~~i~~~--v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---r~~i~dlrk~~~~e~~~PDGm~ID~  221 (310)
T KOG4499|consen  147 GHQVELIWNC--VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---RKVIFDLRKSQPFESLEPDGMTIDT  221 (310)
T ss_pred             CCCceeeehh--ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccC---cceeEEeccCCCcCCCCCCcceEcc
Confidence            4556655543  356889999977889999999999998888  44543332   233321    122346899999999


Q ss_pred             CceEEEEe
Q psy731          450 TGVLWVLS  457 (494)
Q Consensus       450 ~g~Lwvls  457 (494)
                      +|.|||.+
T Consensus       222 eG~L~Va~  229 (310)
T KOG4499|consen  222 EGNLYVAT  229 (310)
T ss_pred             CCcEEEEE
Confidence            99999996

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.27  E-value=41  Score=37.47  Aligned_cols=186  Identities=13%  Similarity=0.133  Sum_probs=90.6

Q ss_pred             CcEEEEeeCCCCeEEEEEccCC-ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          200 NAFLYIADSGHNHIVVYNYRTN-DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       200 ~~~vYItDs~~~~iIVyd~~~~-~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ++.+|++++.+ .|+.+|.++| ..|+++...-     .+...               .......-..+++.       +
T Consensus        69 ~g~vyv~s~~g-~v~AlDa~TGk~lW~~~~~~~-----~~~~~---------------~~~~~~~~rg~av~-------~  120 (527)
T TIGR03075        69 DGVMYVTTSYS-RVYALDAKTGKELWKYDPKLP-----DDVIP---------------VMCCDVVNRGVALY-------D  120 (527)
T ss_pred             CCEEEEECCCC-cEEEEECCCCceeeEecCCCC-----ccccc---------------ccccccccccceEE-------C
Confidence            56889988754 6999999987 5677732100     00000               00000000122332       3


Q ss_pred             cEEEEecCCCCeEEEEEcCCCc-EEEEecCCcc--cCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          279 AFLYIADSGHNHIVVYNYRTND-SHIIHHNYLH--FDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~-swrv~~~~~~--~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                      ..+|+.+. +..|+.+|.++++ -|++......  ..........+|.-+-   |..+-...++   | ...-|.+-++.
T Consensus       121 ~~v~v~t~-dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Viv---g~~~~~~~~~---G-~v~AlD~~TG~  192 (527)
T TIGR03075       121 GKVFFGTL-DARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVIT---GISGGEFGVR---G-YVTAYDAKTGK  192 (527)
T ss_pred             CEEEEEcC-CCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEE---eecccccCCC---c-EEEEEECCCCc
Confidence            46788763 4579999998765 4776532111  0011112223443221   1100001111   2 34455777777


Q ss_pred             ceEeeechhhcCCCcC---ccc--cccceEEe-c---ccCCCCCCCeEEeeCCCCeEEEeccC---------------CC
Q psy731          356 TEFAVTTKVLQNRSLD---FSR--SNFDFKVM-G---SRGTGSQSGASSLDEETGVIFYALLV---------------KS  411 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~---~~~--~~~~v~~~-G---~~G~~~qs~g~~~D~~~G~ly~~~~~---------------~~  411 (494)
                      .+++..+--- +....   ...  .....+.+ |   .+|..+.=..+++|+++|.||++--+               .+
T Consensus       193 ~lW~~~~~p~-~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~  271 (527)
T TIGR03075       193 LVWRRYTVPG-DMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTS  271 (527)
T ss_pred             eeEeccCcCC-CcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccce
Confidence            7777766321 11100   000  00000000 0   12222334467999999999998743               45


Q ss_pred             eEEEEeCCCCc
Q psy731          412 GVGCWNTFRGE  422 (494)
Q Consensus       412 aI~~w~~~~~~  422 (494)
                      +|.+.|.++|+
T Consensus       272 s~vAld~~TG~  282 (527)
T TIGR03075       272 SIVARDPDTGK  282 (527)
T ss_pred             eEEEEccccCC
Confidence            99999999884

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=89.03  E-value=1.4  Score=45.85  Aligned_cols=134  Identities=13%  Similarity=0.111  Sum_probs=74.7

Q ss_pred             eeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCc-C-ccccccceEEecccCCCCCCCeEEeeC---CCCeEEEec
Q psy731          333 GMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSL-D-FSRSNFDFKVMGSRGTGSQSGASSLDE---ETGVIFYAL  407 (494)
Q Consensus       333 gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~-~-~~~~~~~v~~~G~~G~~~qs~g~~~D~---~~G~ly~~~  407 (494)
                      +||..|+   |  .||+.-..+ +++.+.    .+.+. . ...+ .+|...+++|    .-|+++||   .+|.||+..
T Consensus         6 ~~a~~pd---G--~l~v~e~~G-~i~~~~----~~g~~~~~v~~~-~~v~~~~~~g----llgia~~p~f~~n~~lYv~~   70 (331)
T PF07995_consen    6 SMAFLPD---G--RLLVAERSG-RIWVVD----KDGSLKTPVADL-PEVFADGERG----LLGIAFHPDFASNGYLYVYY   70 (331)
T ss_dssp             EEEEETT---S--CEEEEETTT-EEEEEE----TTTEECEEEEE--TTTBTSTTBS----EEEEEE-TTCCCC-EEEEEE
T ss_pred             EEEEeCC---C--cEEEEeCCc-eEEEEe----CCCcCcceeccc-ccccccccCC----cccceeccccCCCCEEEEEE
Confidence            3788775   2  778877755 777776    22221 0 0111 2344445554    46889996   368999988


Q ss_pred             cCC--------CeEEEEeCCCCccccccceeeeeecCC----eEecccceEEcCCceEEEEecCchhhhcCCCCCCcccE
Q psy731          408 LVK--------SGVGCWNTFRGEEYNEKSMGLVAEDNA----TLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINV  475 (494)
Q Consensus       408 ~~~--------~aI~~w~~~~~~~~~~~~~~~v~~d~~----~l~~pd~~~id~~g~Lwvlsnrl~~~~~~~~~~~~~nf  475 (494)
                      ...        +.|.+|.-..+ .-...+.++|..+.+    .--+..+|.+++||+|||.+-.-.. .....+.+...-
T Consensus        71 t~~~~~~~~~~~~v~r~~~~~~-~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~-~~~~~~~~~~~G  148 (331)
T PF07995_consen   71 TNADEDGGDNDNRVVRFTLSDG-DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN-DDNAQDPNSLRG  148 (331)
T ss_dssp             EEE-TSSSSEEEEEEEEEEETT-SCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT-GGGGCSTTSSTT
T ss_pred             EcccCCCCCcceeeEEEeccCC-ccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC-cccccccccccc
Confidence            855        78998887542 111123445544311    2345567899999999999722222 222234455566


Q ss_pred             EEEEEech
Q psy731          476 RIFKSTVR  483 (494)
Q Consensus       476 rI~r~~~~  483 (494)
                      .|+|++.+
T Consensus       149 ~ilri~~d  156 (331)
T PF07995_consen  149 KILRIDPD  156 (331)
T ss_dssp             EEEEEETT
T ss_pred             eEEEeccc
Confidence            78888754

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.79  E-value=31  Score=35.84  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=72.2

Q ss_pred             ecceeeeeeccCCCCCceeEEE-eeCCCcceEeeechh--hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEE
Q psy731          328 QTGIHGMSLSPLTRDNFRVMYF-HPLASTTEFAVTTKV--LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIF  404 (494)
Q Consensus       328 ~~Gi~gIaLsp~~~~g~r~LYf-~plss~~ly~V~T~~--L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly  404 (494)
                      .-|.-|+|-+|.    ++.||| .--.--.+|.+..+-  |-...........++-.       .--.|+.+|+.+|+|+
T Consensus       180 N~GfEGlA~d~~----~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~-------~DvSgl~~~~~~~~LL  248 (316)
T COG3204         180 NKGFEGLAWDPV----DHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFV-------LDVSGLEFNAITNSLL  248 (316)
T ss_pred             CcCceeeecCCC----CceEEEEEccCCcEEEEEecCCcccccccccCcccccceEe-------eccccceecCCCCcEE
Confidence            357889999986    357777 333334778886211  10000001111111111       1245789998899988


Q ss_pred             EeccCCCeEEEEeCCCCc----cccccceeeeeecCCeEecccceEEcCCceEEEEe--cCchhhh
Q psy731          405 YALLVKSGVGCWNTFRGE----EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS--NKLPVFL  464 (494)
Q Consensus       405 ~~~~~~~aI~~w~~~~~~----~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls--nrl~~~~  464 (494)
                      .=--+...+.-.|..+..    .+...++++ -   ..+.=|.|+..|.+|.|||.|  |.|-+|.
T Consensus       249 VLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL-~---~dipqaEGiamDd~g~lYIvSEPnlfy~F~  310 (316)
T COG3204         249 VLSDESRRLLEVDLSGEVIELLSLTKGNHGL-S---SDIPQAEGIAMDDDGNLYIVSEPNLFYRFT  310 (316)
T ss_pred             EEecCCceEEEEecCCCeeeeEEeccCCCCC-c---ccCCCcceeEECCCCCEEEEecCCcceecc
Confidence            877788888888887721    011112222 1   224458899999999999998  7766654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=88.78  E-value=44  Score=37.21  Aligned_cols=145  Identities=11%  Similarity=0.019  Sum_probs=77.7

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-----CC
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----HN  211 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----~~  211 (494)
                      .+++++-+...         +|+++|.+|++++-++.+..  .....+....++|.       ++.||+.-++     .+
T Consensus       120 ~~~v~v~t~dg---------~l~ALDa~TGk~~W~~~~~~--~~~~~~~tssP~v~-------~g~Vivg~~~~~~~~~G  181 (527)
T TIGR03075       120 DGKVFFGTLDA---------RLVALDAKTGKVVWSKKNGD--YKAGYTITAAPLVV-------KGKVITGISGGEFGVRG  181 (527)
T ss_pred             CCEEEEEcCCC---------EEEEEECCCCCEEeeccccc--ccccccccCCcEEE-------CCEEEEeecccccCCCc
Confidence            45777654322         79999999999997776643  11112233455553       4578886543     46


Q ss_pred             eEEEEEccCCc-eeEEecCccccCC-CCCccccCCccceeeeeccccccc-ccccceeeEEeeecCCCCCcEEEEecCC-
Q psy731          212 HIVVYNYRTND-SHIIHHNYLHFDP-LFGDFTIGGEYSEFFQLKEKTDYT-EESKFSNMVVDVTSANCDDAFLYIADSG-  287 (494)
Q Consensus       212 ~iIVyd~~~~~-~~rv~~~~~~~dp-~~~~f~i~g~~~~~f~l~~~~~~~-~~s~~~~i~VD~~~~~c~~~~~YI~D~~-  287 (494)
                      .|+.+|..+|+ .|+++--+-.+.+ .-..++++||-+.- |+..+.-.. ..+--..+++|..     ...+|+.=-. 
T Consensus       182 ~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~-tw~~~~~~~gg~~~W~~~s~D~~-----~~lvy~~tGnp  255 (527)
T TIGR03075       182 YVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK-TWPGDAWKTGGGATWGTGSYDPE-----TNLIYFGTGNP  255 (527)
T ss_pred             EEEEEECCCCceeEeccCcCCCcccccccccccccccccC-CCCCCccccCCCCccCceeEcCC-----CCeEEEeCCCC
Confidence            89999998886 4776322211110 01112233322100 111111111 1122345566642     4566665311 


Q ss_pred             --------------CCeEEEEEcCCCcE-EEEe
Q psy731          288 --------------HNHIVVYNYRTNDS-HIIH  305 (494)
Q Consensus       288 --------------~~gliVydl~~~~s-wrv~  305 (494)
                                    ...|+..|.+|++. |.+-
T Consensus       256 ~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q  288 (527)
T TIGR03075       256 SPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQ  288 (527)
T ss_pred             CCCCCCCCCCCCccceeEEEEccccCCEEEeee
Confidence                          23899999999886 7774

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=88.72  E-value=38  Score=36.47  Aligned_cols=104  Identities=14%  Similarity=0.198  Sum_probs=60.3

Q ss_pred             CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-CCCeEEEEEccCCceeEEecCcc-c
Q psy731          155 PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYL-H  232 (494)
Q Consensus       155 ~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~-~  232 (494)
                      .|.|.++|+.+++..+-..++.         .+ ...+.  ..+++.-+|..+. +...|.++|+.++...++++... .
T Consensus       212 ~~~Iyv~dl~tg~~~~lt~~~g---------~~-~~~~~--SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d  279 (419)
T PRK04043        212 KPTLYKYNLYTGKKEKIASSQG---------ML-VVSDV--SKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGID  279 (419)
T ss_pred             CCEEEEEECCCCcEEEEecCCC---------cE-EeeEE--CCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCcc
Confidence            4677777777766544333222         11 11222  2234555565553 34579999999999888843221 0


Q ss_pred             cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC-CeEEEEEcCCCcEEEEec
Q psy731          233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH-NHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~-~gliVydl~~~~swrv~~  306 (494)
                      -.|                                ...  +  .++..+|.+|-.+ +.|.++|+.+++..|+..
T Consensus       280 ~~p--------------------------------~~S--P--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~  318 (419)
T PRK04043        280 VNG--------------------------------NFV--E--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF  318 (419)
T ss_pred             Ccc--------------------------------EEC--C--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence            000                                111  1  1356788887654 589999999988877653

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=88.47  E-value=14  Score=40.48  Aligned_cols=120  Identities=15%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             ecceeeeeeccCC--CCCceeEEEeeCC---------CcceEeeechhhcCCCcCccccccceEEe-cc-cCCCCCCCeE
Q psy731          328 QTGIHGMSLSPLT--RDNFRVMYFHPLA---------STTEFAVTTKVLQNRSLDFSRSNFDFKVM-GS-RGTGSQSGAS  394 (494)
Q Consensus       328 ~~Gi~gIaLsp~~--~~g~r~LYf~pls---------s~~ly~V~T~~L~~~~~~~~~~~~~v~~~-G~-~G~~~qs~g~  394 (494)
                      ..|+.||||+|+-  ...+++||+..-.         ..++.+...+. .+..     +......+ +. .+..-..+.+
T Consensus        78 e~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~-~~~~-----l~~~~~Il~~lP~~~~H~GgrI  151 (454)
T TIGR03606        78 HNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDK-STQT-----LEKPVDLLAGLPAGNDHNGGRL  151 (454)
T ss_pred             CCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEEEEEecC-CCCc-----cccceEEEecCCCCCCcCCceE
Confidence            5799999999974  1334788886421         22444443211 0011     11111112 21 1112335678


Q ss_pred             EeeCCCCeEEEeccCC--------------------------------CeEEEEeCCCCc----cccccc-eeeeeecCC
Q psy731          395 SLDEETGVIFYALLVK--------------------------------SGVGCWNTFRGE----EYNEKS-MGLVAEDNA  437 (494)
Q Consensus       395 ~~D~~~G~ly~~~~~~--------------------------------~aI~~w~~~~~~----~~~~~~-~~~v~~d~~  437 (494)
                      +++ .+|.||++.=+.                                ..|.|.|+++.+    ||.... -++.+.   
T Consensus       152 ~Fg-PDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~---  227 (454)
T TIGR03606       152 VFG-PDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY---  227 (454)
T ss_pred             EEC-CCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE---
Confidence            899 689999954332                                168888888732    121000 012222   


Q ss_pred             eEecccceEEcCCceEEEEe
Q psy731          438 TLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       438 ~l~~pd~~~id~~g~Lwvls  457 (494)
                      .++=|-+|.+|++|.||+..
T Consensus       228 G~RNp~Gla~dp~G~Lw~~e  247 (454)
T TIGR03606       228 GHRNPQGLAFTPDGTLYASE  247 (454)
T ss_pred             eccccceeEECCCCCEEEEe
Confidence            13346788899999999985

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG1214|consensus

Probab=87.92  E-value=2.6  Score=48.66  Aligned_cols=124  Identities=16%  Similarity=0.181  Sum_probs=86.0

Q ss_pred             eeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCC
Q psy731          331 IHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVK  410 (494)
Q Consensus       331 i~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~  410 (494)
                      +.||+..=+    .|.+||.-|+++   +|.++-|. ..        .-+.+-.+| .+...|+|+|...-|||+++...
T Consensus      1027 iVGidfDC~----e~mvyWtDv~g~---SI~rasL~-G~--------Ep~ti~n~~-L~SPEGiAVDh~~Rn~ywtDS~l 1089 (1289)
T KOG1214|consen 1027 IVGIDFDCR----ERMVYWTDVAGR---SISRASLE-GA--------EPETIVNSG-LISPEGIAVDHIRRNMYWTDSVL 1089 (1289)
T ss_pred             eeeeecccc----cceEEEeecCCC---cccccccc-CC--------CCceeeccc-CCCccceeeeeccceeeeecccc
Confidence            567777543    589999999996   56666664 21        111122233 34578999997677999999999


Q ss_pred             CeEEEEeCCCCccccccceeeeeecCCeEecccceEEcC-CceEEEEe-cCchhhhcCCCCCCcccEEEEEE
Q psy731          411 SGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDR-TGVLWVLS-NKLPVFLYSKLKPEDINVRIFKS  480 (494)
Q Consensus       411 ~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~-~g~Lwvls-nrl~~~~~~~~~~~~~nfrI~r~  480 (494)
                      +.|..-.-++  .+    -++|+.  ..|+=|-++.+|. .|.||-+- ||=...+ ++.+.+..|=||+--
T Consensus      1090 D~IevA~LdG--~~----rkvLf~--tdLVNPR~iv~D~~rgnLYwtDWnRenPkI-ets~mDG~NrRilin 1152 (1289)
T KOG1214|consen 1090 DKIEVALLDG--SE----RKVLFY--TDLVNPRAIVVDPIRGNLYWTDWNRENPKI-ETSSMDGENRRILIN 1152 (1289)
T ss_pred             chhheeecCC--ce----eeEEEe--ecccCcceEEeecccCceeeccccccCCcc-eeeccCCccceEEee
Confidence            9999888887  33    245554  3588999999987 66898875 6665555 345666777777743

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=87.26  E-value=16  Score=37.82  Aligned_cols=66  Identities=11%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEE
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVY  216 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVy  216 (494)
                      .++|++.+...         .|.++|..|++++-++.++..       ....++++       ++.+|+.+. .+.+..+
T Consensus        65 ~~~v~v~~~~g---------~v~a~d~~tG~~~W~~~~~~~-------~~~~p~v~-------~~~v~v~~~-~g~l~al  120 (377)
T TIGR03300        65 GGKVYAADADG---------TVVALDAETGKRLWRVDLDER-------LSGGVGAD-------GGLVFVGTE-KGEVIAL  120 (377)
T ss_pred             CCEEEEECCCC---------eEEEEEccCCcEeeeecCCCC-------cccceEEc-------CCEEEEEcC-CCEEEEE
Confidence            56888876432         699999999999988888772       22345553       678898864 4679999


Q ss_pred             EccCCce-eEE
Q psy731          217 NYRTNDS-HII  226 (494)
Q Consensus       217 d~~~~~~-~rv  226 (494)
                      |.++|+. |+.
T Consensus       121 d~~tG~~~W~~  131 (377)
T TIGR03300       121 DAEDGKELWRA  131 (377)
T ss_pred             ECCCCcEeeee
Confidence            9987764 665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=87.14  E-value=0.96  Score=29.93  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=22.6

Q ss_pred             CCCeEEeeCCCCeEEEeccCCCeEEEE
Q psy731          390 QSGASSLDEETGVIFYALLVKSGVGCW  416 (494)
Q Consensus       390 qs~g~~~D~~~G~ly~~~~~~~aI~~w  416 (494)
                      ...|+++| ++|+||.++.+++.|.++
T Consensus         3 ~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            35689999 999999999999998764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=86.88  E-value=1.4  Score=30.53  Aligned_cols=32  Identities=9%  Similarity=0.016  Sum_probs=28.9

Q ss_pred             CCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          389 SQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       389 ~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..+.|+++|+..+.||+++.....|.+.+-++
T Consensus         9 ~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        9 GHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            45789999999999999999999999998876

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0268|consensus

Probab=86.78  E-value=41  Score=35.88  Aligned_cols=254  Identities=15%  Similarity=0.169  Sum_probs=133.4

Q ss_pred             CCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCcccc
Q psy731          154 QPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHF  233 (494)
Q Consensus       154 ~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~  233 (494)
                      |--.+-.||+.+...+++++-       ...+.++|.||.      +.++|+.|-..=....++.  .-.+-+..++.+-
T Consensus        87 ~DG~VkiWnlsqR~~~~~f~A-------H~G~V~Gi~v~~------~~~~tvgdDKtvK~wk~~~--~p~~tilg~s~~~  151 (433)
T KOG0268|consen   87 CDGEVKIWNLSQRECIRTFKA-------HEGLVRGICVTQ------TSFFTVGDDKTVKQWKIDG--PPLHTILGKSVYL  151 (433)
T ss_pred             cCceEEEEehhhhhhhheeec-------ccCceeeEEecc------cceEEecCCcceeeeeccC--Ccceeeecccccc
Confidence            444788899999888887762       345778999974      7788888876544444444  2444443333222


Q ss_pred             CC----CCCccccCCccceeeeecccccccccc-cceee-EEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecC
Q psy731          234 DP----LFGDFTIGGEYSEFFQLKEKTDYTEES-KFSNM-VVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHN  307 (494)
Q Consensus       234 dp----~~~~f~i~g~~~~~f~l~~~~~~~~~s-~~~~i-~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~  307 (494)
                      +-    .-..|+.+||.=++|...-++-+...+ +..+| .+-..   -..+.+--+=..+.+|++||++++.--+=---
T Consensus       152 gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN---pvETsILas~~sDrsIvLyD~R~~~Pl~KVi~  228 (433)
T KOG0268|consen  152 GIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN---PVETSILASCASDRSIVLYDLRQASPLKKVIL  228 (433)
T ss_pred             ccccccccccccccCceeeecccccCCccceeecCCCceeEEecC---CCcchheeeeccCCceEEEecccCCccceeee
Confidence            22    246788888776666553322222211 11111 11111   11222222223568999999998762111000


Q ss_pred             CcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCC
Q psy731          308 YLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGT  387 (494)
Q Consensus       308 ~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~  387 (494)
                      .|                    --++|+-+|-     ...|..+=--..+|--....|..+..          ..  +| 
T Consensus       229 ~m--------------------RTN~IswnPe-----afnF~~a~ED~nlY~~DmR~l~~p~~----------v~--~d-  270 (433)
T KOG0268|consen  229 TM--------------------RTNTICWNPE-----AFNFVAANEDHNLYTYDMRNLSRPLN----------VH--KD-  270 (433)
T ss_pred             ec--------------------cccceecCcc-----ccceeeccccccceehhhhhhcccch----------hh--cc-
Confidence            11                    1234444441     11222221122444445555543321          11  11 


Q ss_pred             CCCCCeEEee-CCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEecCchhhhcC
Q psy731          388 GSQSGASSLD-EETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYS  466 (494)
Q Consensus       388 ~~qs~g~~~D-~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnrl~~~~~~  466 (494)
                       --|.-|.+| ..+|.=|.+-.=..+|-.++.+.|     .+-++ +.. .|+|-.-+++...|. =||+|         
T Consensus       271 -hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-----~SRdi-Yht-kRMq~V~~Vk~S~Ds-kyi~S---------  332 (433)
T KOG0268|consen  271 -HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-----HSRDI-YHT-KRMQHVFCVKYSMDS-KYIIS---------  332 (433)
T ss_pred             -cceeEEEeccCCCcchhccccccceEEEeecCCC-----cchhh-hhH-hhhheeeEEEEeccc-cEEEe---------
Confidence             113345555 367877777777788999988764     12233 332 677777777765543 23332         


Q ss_pred             CCCCCcccEEEEEEech
Q psy731          467 KLKPEDINVRIFKSTVR  483 (494)
Q Consensus       467 ~~~~~~~nfrI~r~~~~  483 (494)
                        ..++.|.|+||..-.
T Consensus       333 --GSdd~nvRlWka~As  347 (433)
T KOG0268|consen  333 --GSDDGNVRLWKAKAS  347 (433)
T ss_pred             --cCCCcceeeeecchh
Confidence              256789999998643

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=86.22  E-value=1.8  Score=28.65  Aligned_cols=23  Identities=22%  Similarity=0.223  Sum_probs=19.7

Q ss_pred             ceEEeeEEEcCCCeEEEEeCCCC
Q psy731          126 LTSVVKVQSDPCDRLWALDSGVV  148 (494)
Q Consensus       126 lvsV~~i~iD~~~~LwvlD~G~~  148 (494)
                      |..+.++.+|.+|.|||.|.+.-
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~   23 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNH   23 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCT
T ss_pred             CcCCcEEEEeCCCCEEEEECCCC
Confidence            34578999999999999998876

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=85.04  E-value=2.4  Score=47.15  Aligned_cols=72  Identities=14%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             CCCCeEEeeCCCCeEEEeccCCC-------------------eEEEEeCCCCc-cccccceeeeeec-------------
Q psy731          389 SQSGASSLDEETGVIFYALLVKS-------------------GVGCWNTFRGE-EYNEKSMGLVAED-------------  435 (494)
Q Consensus       389 ~qs~g~~~D~~~G~ly~~~~~~~-------------------aI~~w~~~~~~-~~~~~~~~~v~~d-------------  435 (494)
                      ...-++.++|.+|.+|++..+..                   .|++|++.++. ....-...+++..             
T Consensus       350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~  429 (524)
T PF05787_consen  350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNK  429 (524)
T ss_pred             cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCc
Confidence            34678999999999999998877                   89999987630 0111123333321             


Q ss_pred             --CCeEecccceEEcCCceEEEEecCc
Q psy731          436 --NATLIYPSDIRVDRTGVLWVLSNKL  460 (494)
Q Consensus       436 --~~~l~~pd~~~id~~g~Lwvlsnrl  460 (494)
                        ...|.-||.|.+|++|.|||.+..-
T Consensus       430 ~~~~~f~sPDNL~~d~~G~LwI~eD~~  456 (524)
T PF05787_consen  430 CDDNGFASPDNLAFDPDGNLWIQEDGG  456 (524)
T ss_pred             ccCCCcCCCCceEECCCCCEEEEeCCC
Confidence              3558899999999999999997443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=84.65  E-value=67  Score=35.17  Aligned_cols=66  Identities=14%  Similarity=0.250  Sum_probs=43.1

Q ss_pred             CEEEEEECCCCcEEEEEEcCC-Ccccc-------------ccCCccceEEEeecCCCCCcEEEEeeCCC-----------
Q psy731          156 PSVQVYDLRQQMQIRFFQLKE-KTDYT-------------EESKFSNMVVDVTSANCDNAFLYIADSGH-----------  210 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~-~~~~~-------------~~S~l~d~vVD~~~~~c~~~~vYItDs~~-----------  210 (494)
                      -.|+++|+.|++++=++++.. .....             .......+++|.     .++.||+.-...           
T Consensus       175 g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-----~~g~V~vg~~~g~~~~~~~~~~~  249 (488)
T cd00216         175 GALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-----KTNLVYVGTGNGSPWNWGGRRTP  249 (488)
T ss_pred             cEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-----CCCEEEEECCCCCCCccCCccCC
Confidence            367899999999998888732 11111             112234566764     467888874332           


Q ss_pred             ------CeEEEEEccCCce-eEE
Q psy731          211 ------NHIVVYNYRTNDS-HII  226 (494)
Q Consensus       211 ------~~iIVyd~~~~~~-~rv  226 (494)
                            +.|+.+|.++|+. |+.
T Consensus       250 ~~~~~~~~l~Ald~~tG~~~W~~  272 (488)
T cd00216         250 GDNLYTDSIVALDADTGKVKWFY  272 (488)
T ss_pred             CCCCceeeEEEEcCCCCCEEEEe
Confidence                  3799999998875 555

The alignment model contains an 8-bladed beta-propeller.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=83.81  E-value=41  Score=37.11  Aligned_cols=104  Identities=12%  Similarity=0.139  Sum_probs=61.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  236 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~  236 (494)
                      +|.+||..++++.+ ++=       +-+.+-.+.|+.     +..++-++.. +.-|.|+|+.+|..+-++.+-      
T Consensus       383 ~l~iyd~~~~e~kr-~e~-------~lg~I~av~vs~-----dGK~~vvaNd-r~el~vididngnv~~idkS~------  442 (668)
T COG4946         383 KLGIYDKDGGEVKR-IEK-------DLGNIEAVKVSP-----DGKKVVVAND-RFELWVIDIDNGNVRLIDKSE------  442 (668)
T ss_pred             eEEEEecCCceEEE-eeC-------CccceEEEEEcC-----CCcEEEEEcC-ceEEEEEEecCCCeeEecccc------
Confidence            78888888877654 321       112233333432     3455555543 357999999999998884311      


Q ss_pred             CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC--CCeEEEEEcCCCcEEEEecCC
Q psy731          237 FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG--HNHIVVYNYRTNDSHIIHHNY  308 (494)
Q Consensus       237 ~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~--~~gliVydl~~~~swrv~~~~  308 (494)
                                              -..+.+++.-.    -.+-+||--=.+  ...|-+||+.+++..+++.+.
T Consensus       443 ------------------------~~lItdf~~~~----nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t  488 (668)
T COG4946         443 ------------------------YGLITDFDWHP----NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT  488 (668)
T ss_pred             ------------------------cceeEEEEEcC----CceeEEEecCcceeeeeEEEEecCCCeEEEecCCc
Confidence                                    11223333321    134555543333  257899999999999998653

>KOG1539|consensus

Probab=82.52  E-value=23  Score=41.19  Aligned_cols=163  Identities=15%  Similarity=0.266  Sum_probs=86.0

Q ss_pred             ccceeeEEeeecCCCCCcEEEEecCCCCeE-EEEEcCCCc---EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeec
Q psy731          262 SKFSNMVVDVTSANCDDAFLYIADSGHNHI-VVYNYRTND---SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLS  337 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gl-iVydl~~~~---swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLs  337 (494)
                      .-.+++++|.+.      -.-|+- +..|| -.||.++..   +||+.+.-            .+..+....+++.|++.
T Consensus       494 ~~V~gla~D~~n------~~~vsa-~~~Gilkfw~f~~k~l~~~l~l~~~~------------~~iv~hr~s~l~a~~~d  554 (910)
T KOG1539|consen  494 GEVTGLAVDGTN------RLLVSA-GADGILKFWDFKKKVLKKSLRLGSSI------------TGIVYHRVSDLLAIALD  554 (910)
T ss_pred             CceeEEEecCCC------ceEEEc-cCcceEEEEecCCcceeeeeccCCCc------------ceeeeeehhhhhhhhcC
Confidence            346778888652      122332 33454 477777665   45554432            22233344566777774


Q ss_pred             cCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEe
Q psy731          338 PLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWN  417 (494)
Q Consensus       338 p~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~  417 (494)
                      .-              +-.+|.+-|...          .+.|.-.|+     +-..|.+. .+|....+......|..||
T Consensus       555 df--------------~I~vvD~~t~kv----------vR~f~gh~n-----ritd~~FS-~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  555 DF--------------SIRVVDVVTRKV----------VREFWGHGN-----RITDMTFS-PDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             ce--------------eEEEEEchhhhh----------hHHhhcccc-----ceeeeEeC-CCCcEEEEeecCCcEEEEe
Confidence            21              223334433222          133333333     35678888 8999999999999999999


Q ss_pred             CCCCccccccceeeeeecCCe--------EecccceEEcCCc-eEEEEecCchhhhcCCCCCCcccEEEE
Q psy731          418 TFRGEEYNEKSMGLVAEDNAT--------LIYPSDIRVDRTG-VLWVLSNKLPVFLYSKLKPEDINVRIF  478 (494)
Q Consensus       418 ~~~~~~~~~~~~~~v~~d~~~--------l~~pd~~~id~~g-~Lwvlsnrl~~~~~~~~~~~~~nfrI~  478 (494)
                      .-+|.     -+..+.-|.+.        ..|=....+|..| +||..-..|...--..++..+.+-++.
T Consensus       605 lpt~~-----lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF~~vs~r~~~~~~~~~~v~  669 (910)
T KOG1539|consen  605 LPTGT-----LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLFKSVSTRAIPADYVPSWVM  669 (910)
T ss_pred             ccCcc-----eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEchhHheeccccccCcccccceee
Confidence            76642     13444444333        2222233345555 566544444443333455555555554

>PRK01742 tolB translocation protein TolB; Provisional

Probab=80.48  E-value=86  Score=33.50  Aligned_cols=28  Identities=14%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CCcEEEEeeC-CCCeEEEEEccCCceeEE
Q psy731          199 DNAFLYIADS-GHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       199 ~~~~vYItDs-~~~~iIVyd~~~~~~~rv  226 (494)
                      ++..+|+++. +...|.++|+.+|...++
T Consensus       215 G~~la~~s~~~~~~~i~i~dl~tg~~~~l  243 (429)
T PRK01742        215 GSKLAYVSFENKKSQLVVHDLRSGARKVV  243 (429)
T ss_pred             CCEEEEEEecCCCcEEEEEeCCCCceEEE
Confidence            5677888764 345799999999877666

>PRK01029 tolB translocation protein TolB; Provisional

Probab=80.18  E-value=91  Score=33.58  Aligned_cols=28  Identities=14%  Similarity=0.177  Sum_probs=23.3

Q ss_pred             cEEEEeeCC-CCeEEEEEccCCceeEEec
Q psy731          201 AFLYIADSG-HNHIVVYNYRTNDSHIIHH  228 (494)
Q Consensus       201 ~~vYItDs~-~~~iIVyd~~~~~~~rv~~  228 (494)
                      .++|+++.. ...|.++|+.+|...++.+
T Consensus       200 ~~~y~S~~~g~~~I~~~~l~~g~~~~lt~  228 (428)
T PRK01029        200 PYLYVSYKLGVPKIFLGSLENPAGKKILA  228 (428)
T ss_pred             EEEEEEccCCCceEEEEECCCCCceEeec
Confidence            488999875 4679999999999999943

---

Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	494
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	2e-92
2qe8_A	343	Uncharacterized protein; structural genomics, join	6e-26
2qe8_A	343	Uncharacterized protein; structural genomics, join	8e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* Length = 381

 Score =  285 bits (729), Expect = 2e-92
 Identities = 101/468 (21%), Positives = 174/468 (37%), Gaps = 98/468 (20%)

Query: 31  TEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLP--VSLDKWHDRLFLAVPRHKNGVPS 88
           T+ + WKQ+ +              G +  +N +    + D   ++LFLAVPR    VP 
Sbjct: 3   TQGYKWKQLLYNNVTP---------GSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPY 53

Query: 89  TLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVV 148
           TL  V    ++   K   SP+L  +   ++     + LTS+ +   D C RLW       
Sbjct: 54  TLAEVDT-KNSLGVKGKHSPLLNKFSGHKTG----KELTSIYQPVIDDCRRLW------- 101

Query: 149 EGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS 208
                                                    VVD+ S    +       S
Sbjct: 102 -----------------------------------------VVDIGSVEYRSRGAKDYPS 120

Query: 209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMV 268
               IV Y+ +  +   +   Y                             + + F    
Sbjct: 121 HRPAIVAYDLKQPNYPEVVRYYFPTR----------------------LVEKPTYFGGFA 158

Query: 269 VDVT--SANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQ 326
           VDV     +C + F+YI +     + +Y+++  DS  + H     +     F  GG  ++
Sbjct: 159 VDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAER-PTKFDYGGKEYE 217

Query: 327 WQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRG 386
           ++ GI G++L     +  R  Y+   ++   ++V TK L+ +         + +++G+RG
Sbjct: 218 FKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKG-----GKLNPELLGNRG 272

Query: 387 TGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIR 446
             + + A + D +T VIF+A      V CWNT +           V   ++  ++ +DI 
Sbjct: 273 KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK--MPLRMKNTDVVYTSSRFVFGTDIS 330

Query: 447 VDRTGVLWVLSNKLPVFLYS-KLKPEDINVRIFK-STVRNAIKGTVCD 492
           VD  G LW +SN  P    S K K +    R+ +    + AI GT CD
Sbjct: 331 VDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIAGTACD 378

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343

 Score =  107 bits (268), Expect = 6e-26
 Identities = 48/310 (15%), Positives = 97/310 (31%), Gaps = 66/310 (21%)

Query: 190 VVDVTSANCDNAFLYIADSGHNH-----IVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG 244
           V+ + S       +++ D+G+       +V ++   N              L    T+  
Sbjct: 69  VLGIKSDGNGI--VWMLDNGNQSKSVPKLVAWDTLNN-------QLSRVIYLPPPITLSN 119

Query: 245 EYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG---HNHIVVYNYRTNDS 301
            +                  +++ VD         F+YI+D        ++  + +T  +
Sbjct: 120 SF-----------------VNDLAVD-----LIHNFVYISDPAPDDKAALIRVDLQTGLA 157

Query: 302 HIIHHNYLHFDPLFGDFTIGGVNFQW----------QTGIHGMSLSPLTRDNFRVMYFHP 351
             +   Y    P   D  I GV  Q             G++G+ L          +Y  P
Sbjct: 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA----ENEWLYLSP 213

Query: 352 LASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKS 411
           + ST+ + + +  L N  L  +      +    +         S+D +   I+   L  S
Sbjct: 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEK---PICDGISID-KDHNIYVGDLAHS 269

Query: 412 GVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVF--LYSKLK 469
            +G   +       +++  L+  D   L +         G L+   N+L     L +   
Sbjct: 270 AIGVITS------ADRAYKLLVTDE-KLSWTDSFNFGSDGYLYFDCNQLHHSAPLNAGEN 322

Query: 470 PEDINVRIFK 479
                  IF+
Sbjct: 323 ISAPPYYIFR 332

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} Length = 343

 Score = 95.6 bits (237), Expect = 8e-22
 Identities = 47/336 (13%), Positives = 93/336 (27%), Gaps = 81/336 (24%)

Query: 74  RLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQ 133
           RLFL++ +        +  +            T   L+P+P    N        +V+ ++
Sbjct: 29  RLFLSLHQF-YQPEMQVAEL------------TQDGLIPFPPQSGN--AIITFDTVLGIK 73

Query: 134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDV 193
           SD    +W LD+G         P +  +D       R   L         S  +++ VD 
Sbjct: 74  SDGNGIVWMLDNGNQSK---SVPKLVAWDTLNNQLSRVIYLPP-PITLSNSFVNDLAVD- 128

Query: 194 TSANCDNAFLYIADSG---HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGE----- 245
                 + F+YI+D        ++  + +T  +  +   Y    P   D  I G      
Sbjct: 129 ----LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG 184

Query: 246 --------------------------YSEFFQLKE---KTDY-----TEESKFSNMVVDV 271
                                      S          K+         +++  + +   
Sbjct: 185 QPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY 244

Query: 272 TSANCDDAF-------LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG-- 322
           +     D         +Y+ D  H+ I V         ++  +          F  G   
Sbjct: 245 SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWT--DSFNFGSDG 302

Query: 323 ----VNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS 354
                  Q        +   ++   + +    PLA+
Sbjct: 303 YLYFDCNQLHHSAPLNAGENISAPPYYIFRLKPLAA 338

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 52/329 (15%), Positives = 98/329 (29%), Gaps = 105/329 (31%)

Query: 5   LPRVLLAI--LVVAILSLTAHFSQSSRLTEIFNWKQVDFAFPNEEERRLAQTRGQFVAEN 62
           LPR +L      ++I++     S    L    NWK V+         +L       +  N
Sbjct: 318 LPREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCD-------KLTTIIESSL--N 364

Query: 63  CLPVSLDKWHDRLF--LAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNV 120
            L  +  +   ++F  L+V                P S +    I + +L     W   +
Sbjct: 365 VLEPAEYR---KMFDRLSV---------------FPPSAH----IPTILLSLI--WFDVI 400

Query: 121 REARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDY 180
           +        V V  +   +   ++      K  +  ++ +  +       + +LK K + 
Sbjct: 401 KS------DVMVVVNKLHKYSLVE------KQPKESTISIPSI-------YLELKVKLE- 440

Query: 181 TEESKFSNMVVD---VTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHH--------N 229
             E      +VD   +      +  +            Y Y    SHI HH         
Sbjct: 441 -NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------YFY----SHIGHHLKNIEHPER 489

Query: 230 YLHFDPLFGDFTIGGEYSEFFQLK---EKTDYTEESKFSNMVVDVTSANCDDAFL-YIAD 285
              F  +F DF        F + K   + T +       N +  +        +  YI D
Sbjct: 490 MTLFRMVFLDF-------RFLEQKIRHDSTAWNASGSILNTLQQL------KFYKPYICD 536

Query: 286 S-GHNHIVVYNYRTN----DSHIIHHNYL 309
           +      +V          + ++I   Y 
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYT 565

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 55/408 (13%), Positives = 109/408 (26%), Gaps = 127/408 (31%)

Query: 30  LTEIFNWKQVDFAF--PNEEER--------RLAQTRG--QFVAENCLPVSLDKWHDRLFL 77
              I + +++D      +               Q     +FV E      L    +  FL
Sbjct: 42  PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-----VLRI--NYKFL 94

Query: 78  AVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYP-----------SWESNVREARNL 126
             P        ++   M     ++  +  + +   Y                 +R A+N+
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 127 T---------SVV--------KVQSDPCDRL-WALDSGVV---EGKMEQ---------PP 156
                     + V        KVQ     ++ W L+       E  +E          P 
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 157 SVQVYDLRQQMQIRFFQLKEK-TDYTEESKFSNMVV---DVTSANCDNAFLYIADSGHNH 212
                D    +++R   ++ +     +   + N ++   +V +A   NAF     +    
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLSCK 267

Query: 213 IVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEE------SKFSN 266
           I++    T    +             DF      +           T +       K+ +
Sbjct: 268 ILL---TTRFKQVT------------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 267 MVV-DVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNF 325
               D+           ++      I+  + R   +     N+ H            VN 
Sbjct: 313 CRPQDLPREVLTTNPRRLS------IIAESIRDGLATW--DNWKH------------VNC 352

Query: 326 QWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV-------TTKVLQ 366
              T I   SL+ L    +R M+          +V        T +L 
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMF-------DRLSVFPPSAHIPTILLS 393

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	494
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	100.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	100.0
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	99.74
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.53
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.49
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.49
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.47
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.42
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.4
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.39
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.37
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.3
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.28
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.28
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.28
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.26
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.26
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.26
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.2
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.19
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.17
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.16
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.14
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.13
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.13
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.1
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.1
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.08
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.03
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.03
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.02
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.02
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.02
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.0
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.97
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.84
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	98.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.82
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.8
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.8
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.78
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.73
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.67
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.66
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.64
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.61
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	98.51
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	98.51
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.49
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.46
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	98.46
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.43
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.42
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.42
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.4
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.39
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	98.36
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.36
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.34
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	98.32
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.3
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	98.28
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.24
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.24
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.2
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.17
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.16
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.12
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.1
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.09
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.02
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.01
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.0
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.0
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	97.99
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.93
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	97.89
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	97.87
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.87
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.81
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.8
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	97.8
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.77
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.77
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.71
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.7
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.67
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	97.62
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.62
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.6
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.54
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.5
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	97.5
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	97.47
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.41
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	97.36
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	97.22
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.19
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.18
3ott_A	758	Two-component system sensor histidine kinase; beta	97.05
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.05
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.05
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.05
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	96.95
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.93
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.92
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.84
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	96.82
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.75
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.72
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.59
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.59
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.51
3ott_A	758	Two-component system sensor histidine kinase; beta	96.51
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.5
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	96.48
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.46
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	96.46
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	96.4
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.23
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	96.21
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	96.1
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	96.09
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.83
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	95.66
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	95.64
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.3
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	95.18
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.17
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.13
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.04
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.98
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	94.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.89
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	94.86
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.77
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	94.77
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.71
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.63
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	94.54
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.47
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	94.42
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.39
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	94.38
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.35
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	94.29
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.83
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.74
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.71
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	93.67
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.52
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.49
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.38
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	93.32
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	93.15
3jro_A	753	Fusion protein of protein transport protein SEC13	93.07
1k32_A	1045	Tricorn protease; protein degradation, substrate g	93.04
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	92.99
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.92
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	92.81
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	92.53
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.18
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.05
1k32_A	1045	Tricorn protease; protein degradation, substrate g	92.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	91.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	91.76
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	91.45
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	91.24
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	91.06
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	90.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.61
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.35
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	90.29
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	90.21
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	90.11
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	89.94
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	89.55
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	89.49
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	88.56
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.18
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	88.14
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	87.93
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	87.83
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	87.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	87.41
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.25
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	87.04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	86.72
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.61
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	86.35
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	85.85
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	85.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	85.67
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	85.51
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	85.46
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	85.46
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	85.42
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	85.19
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	85.14
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	84.64
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	84.34
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	84.05
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	83.88
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	83.86
3jrp_A	379	Fusion protein of protein transport protein SEC13	83.66
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.32
3jro_A	753	Fusion protein of protein transport protein SEC13	83.2
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	83.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	82.57
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	82.32
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	81.41
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	81.31
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	80.77
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	80.74
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	80.72
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	80.51
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	80.21

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=100.00  E-value=2.9e-94  Score=750.03  Aligned_cols=361  Identities=28%  Similarity=0.492  Sum_probs=327.0

Q ss_pred             ceEEEEEeeeeeeCCCHHHHHHhhccCCcccCCCeeeeeee--eCCcEEEEecCCCCCCCceeEEEEccCCCCCCC-CCC
Q psy731           30 LTEIFNWKQVDFAFPNEEERRLAQTRGQFVAENCLPVSLDK--WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNK-SIT  106 (494)
Q Consensus        30 ~~~~~~W~~~df~~p~~~~r~~~~~~g~y~p~~~~p~gv~v--~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~-~~~  106 (494)
                      +|++||||+|||+         |+.+|.|+|+|++|+||++  ++||+|||+|||+.|+|+||++|..+..   ++ ...
T Consensus         2 ~~~~~~Wk~ld~~---------ai~~g~y~p~n~~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~---~~~~~~   69 (381)
T 3q6k_A            2 DTQGYKWKQLLYN---------NVTPGSYNPDNMISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNS---LGVKGK   69 (381)
T ss_dssp             CCEEEEESSCCBT---------TSCTTSSCGGGCCCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHH---TTCTTC
T ss_pred             cceEEEEEeeccc---------cccCCCcccCccceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCC---cccccC
Confidence            6899999999996         9999999999999999999  8999999999999999999999986532   10 012


Q ss_pred             CCcc-ccCCCcccccccCCCceEEeeEEEcCCCeEEEEeCCCCC----CCC---CCCCEEEEEECCCC--cEEEEEEcCC
Q psy731          107 SPIL-MPYPSWESNVREARNLTSVVKVQSDPCDRLWALDSGVVE----GKM---EQPPSVQVYDLRQQ--MQIRFFQLKE  176 (494)
Q Consensus       107 sp~l-~PYP~~~~n~~~~~~lvsV~~i~iD~~~~LwvlD~G~~~----~~~---~~~Pklv~~dl~t~--~vi~~~~lp~  176 (494)
                      +|+| +|||+|    .+|++|+||+++++|+|+||||||+|..+    +.+   .|+|||++|||+|+  +++|+|+||+
T Consensus        70 ~p~ll~PYP~w----~~~~~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~  145 (381)
T 3q6k_A           70 HSPLLNKFSGH----KTGKELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPT  145 (381)
T ss_dssp             SSCCBEECTTC----SSSCSSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCG
T ss_pred             CcccccCCCCC----ccccceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCH
Confidence            6888 999998    37999999999999999999999999987    246   89999999999999  9999999998


Q ss_pred             CccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccc
Q psy731          177 KTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKT  256 (494)
Q Consensus       177 ~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~  256 (494)
                      +                                                                               
T Consensus       146 ~-------------------------------------------------------------------------------  146 (381)
T 3q6k_A          146 R-------------------------------------------------------------------------------  146 (381)
T ss_dssp             G-------------------------------------------------------------------------------
T ss_pred             H-------------------------------------------------------------------------------
Confidence            3                                                                               


Q ss_pred             cccccccceeeEEeee-c-CCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeee
Q psy731          257 DYTEESKFSNMVVDVT-S-ANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGM  334 (494)
Q Consensus       257 ~~~~~s~~~~i~VD~~-~-~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gI  334 (494)
                      ++.++|+|++|+||+. + ++|+++||||+|++.+||||||++++++||++|++|+|| ..+.|+|+|++|+|++|+|||
T Consensus       147 ~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~~~~~~i~G~~~~~~~Gi~gI  225 (381)
T 3q6k_A          147 LVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-RPTKFDYGGKEYEFKAGIFGI  225 (381)
T ss_dssp             GCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-SCEEEEETTEEEEECCCEEEE
T ss_pred             hcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-cCcceEECCEEeEeccCceEE
Confidence            3334445555555522 2 379999999999999999999999999999999999999 678999999999999999999


Q ss_pred             eeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEE
Q psy731          335 SLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVG  414 (494)
Q Consensus       335 aLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~  414 (494)
                      ||||++.+|+|+||||||+|++||+|+|++|+|+++     ..+|+.+|+||+++|+.|+++|+++|+|||++++++||+
T Consensus       226 aLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~-----~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~  300 (381)
T 3q6k_A          226 TLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGG-----KLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVS  300 (381)
T ss_dssp             EECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTC-----CCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEE
T ss_pred             EecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcch-----hhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEE
Confidence            999998888899999999999999999999999874     578999999987788889999768999999999999999


Q ss_pred             EEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEecCchhhhcCCC-CCCcccEEEEEE-echhhhcCCCCC
Q psy731          415 CWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKL-KPEDINVRIFKS-TVRNAIKGTVCD  492 (494)
Q Consensus       415 ~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnrl~~~~~~~~-~~~~~nfrI~r~-~~~~~i~~t~C~  492 (494)
                      |||+++. +|+++|+++|++|+ +|+||+++++|.+|+|||++||||+|+++++ |.+++||||||+ +++++|+||+|+
T Consensus       301 ~w~~~~~-~~~~~n~~~l~~d~-~l~~pd~~~i~~~g~Lwv~sn~l~~~~~g~l~d~~~~nfrI~r~~~~~~~i~~t~C~  378 (381)
T 3q6k_A          301 CWNTQKM-PLRMKNTDVVYTSS-RFVFGTDISVDSKGGLWFMSNGFPPIRKSEKFKYDFPRYRLMRIMDTQEAIAGTACD  378 (381)
T ss_dssp             EEETTSC-SBCGGGEEEEEECT-TCCSEEEEEECTTSCEEEEECSCCSSTTGGGCCCSSCSEEEEEESCHHHHHTTSTTS
T ss_pred             EEeCCCC-ccccCceEEEEECC-CccccCeEEECCCCeEEEEECcchHhhcCCcCCCCcCCEEEEEecCHHHHhcCCCCC
Confidence            9999853 79999999999996 9999999999999999999999999999998 999999999999 999999999998


Q ss_pred             C
Q psy731          493 E  493 (494)
Q Consensus       493 ~  493 (494)
                      +
T Consensus       379 ~  379 (381)
T 3q6k_A          379 M  379 (381)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=4.4e-41  Score=339.17  Aligned_cols=300  Identities=20%  Similarity=0.281  Sum_probs=250.1

Q ss_pred             Ceeeeeeee-CCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEE
Q psy731           63 CLPVSLDKW-HDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLW  141 (494)
Q Consensus        63 ~~p~gv~v~-~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~Lw  141 (494)
                      ..|.||++. +||+|++.|||..|+ .+|.++.  .          +++.|||+|+-.  .|.++.+++++.+|+|++||
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~-~~l~~~~--~----------g~~~~~p~~~~~--~~~~~~~p~gv~~d~~g~L~   81 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPE-MQVAELT--Q----------DGLIPFPPQSGN--AIITFDTVLGIKSDGNGIVW   81 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCS-CSEEEEE--T----------TEEEESCCCCSS--CCCCCSCEEEEEECSSSEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCc-eEEEEEC--C----------CCeecCCCcccC--cccceeEeeEEEEcCCCcEE
Confidence            689999996 899999999998777 8999997  2          468999998632  57899999999999999999


Q ss_pred             EEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC
Q psy731          142 ALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN  221 (494)
Q Consensus       142 vlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~  221 (494)
                      |+|.|.   .+.|.++|++||++++++++++.+|+. ...+.                                      
T Consensus        82 v~D~g~---~~~~~~~i~~~d~~tg~~~~~~~~~~~-~~~~~--------------------------------------  119 (343)
T 2qe8_A           82 MLDNGN---QSKSVPKLVAWDTLNNQLSRVIYLPPP-ITLSN--------------------------------------  119 (343)
T ss_dssp             EEECHH---HHTSCCEEEEEETTTTEEEEEEECCTT-TSCTT--------------------------------------
T ss_pred             EEcCCC---CcCCCCeEEEEECCCCeEEEEEECChh-hcccc--------------------------------------
Confidence            999985   246788999999999999999999862 11222                                      


Q ss_pred             ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC---CCCeEEEEEcCC
Q psy731          222 DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS---GHNHIVVYNYRT  298 (494)
Q Consensus       222 ~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~---~~~gliVydl~~  298 (494)
                                                              +++++++||.     +++++||+|.   ..++|+|||+++
T Consensus       120 ----------------------------------------~~~~~v~vd~-----~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A          120 ----------------------------------------SFVNDLAVDL-----IHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             ----------------------------------------CCCCEEEEET-----TTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             ----------------------------------------cccceEEEec-----CCCEEEEEcCccCCCCeEEEEECCC
Confidence                                                    3445555553     2468888888   778999999999


Q ss_pred             CcEEEEec--CCcccCCCCcceEEcCEEee----------eecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhc
Q psy731          299 NDSHIIHH--NYLHFDPLFGDFTIGGVNFQ----------WQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQ  366 (494)
Q Consensus       299 ~~swrv~~--~~~~~dP~~~~~~v~G~~f~----------~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~  366 (494)
                      ++.||+.+  .++.++|  ..+.++|+.|.          |..|++|||+||+    +++|||+++.++++|+++++.|+
T Consensus       155 g~~~r~~~~~~~~~~~~--~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d----g~~ly~~~~~~~~l~~~~~~~~~  228 (343)
T 2qe8_A          155 GLAARVLQGYPGIAPED--IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE----NEWLYLSPMHSTSMYRIKSADLS  228 (343)
T ss_dssp             CCEEEECTTCTTTSCCS--CCCEETTEECBEECTTSCEECCCCCEEEEEECTT----SCEEEEEESSCSEEEEEEHHHHT
T ss_pred             CCEEEEecCCCcccccc--cceeECCEEEEeccCCCceeceecccceeEeccC----CCEEEEEeCCCCeEEEEEHHHhc
Confidence            99999984  4777665  67888998886          6789999999997    37999999999999999999999


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeC-CCCccccccceeeeeecCCeEecccce
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNT-FRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~-~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                      +..+...+....++.+|++|   +++|+++| .+|+||+++...++|.|||+ ++       ++.+++.+ +++.||+++
T Consensus       229 ~~~~~~~~~~~~~~~~g~~g---~pdgia~d-~~G~l~va~~~~~~V~~~d~~~G-------~~~~~~~~-~~~~~p~~v  296 (343)
T 2qe8_A          229 NLQLTDAELGSKIERYSEKP---ICDGISID-KDHNIYVGDLAHSAIGVITSADR-------AYKLLVTD-EKLSWTDSF  296 (343)
T ss_dssp             CTTCCHHHHHTTCEEEEECC---SCSCEEEC-TTCCEEEEEGGGTEEEEEETTTT-------EEEEEEEC-GGGSCEEEE
T ss_pred             CCCCChhhhhcceEecccCC---CCceEEEC-CCCCEEEEccCCCeEEEEECCCC-------CEEEEEEC-CceecCCee
Confidence            88775555566778888874   68999999 78999999999999999999 55       35677776 578999999


Q ss_pred             EEcCCceEEEEecCch---hhhcCCCCCCcccEEEEEEech
Q psy731          446 RVDRTGVLWVLSNKLP---VFLYSKLKPEDINVRIFKSTVR  483 (494)
Q Consensus       446 ~id~~g~Lwvlsnrl~---~~~~~~~~~~~~nfrI~r~~~~  483 (494)
                      +++.+|.|||++++++   .|.++ ++.++.||+|||+++.
T Consensus       297 a~~~~g~l~v~~~~~~~~~~f~~~-~~~~~~~~~i~~~~~~  336 (343)
T 2qe8_A          297 NFGSDGYLYFDCNQLHHSAPLNAG-ENISAPPYYIFRLKPL  336 (343)
T ss_dssp             EECTTSCEEEEECCGGGSGGGBTT-CCCCCSCEEEEEECCS
T ss_pred             EECCCCcEEEEeCccccccccccC-CCcCcCCeEEEEEECC
Confidence            9999999999998664   46654 8999999999999986

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=99.74  E-value=1.1e-16  Score=166.58  Aligned_cols=217  Identities=16%  Similarity=0.216  Sum_probs=147.9

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEee-cC-CCCCcEEEEeeCCCCeE
Q psy731          136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVT-SA-NCDNAFLYIADSGHNHI  213 (494)
Q Consensus       136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~-~~-~c~~~~vYItDs~~~~i  213 (494)
                      +.++|+++|+.+.+     ...+.+|.++.+.+.            ++|+|+|++||++ +. +|+++||||||++.+||
T Consensus       121 ~~pkLv~~DL~t~~-----~~li~~y~~p~~~~~------------~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gL  183 (381)
T 3q6k_A          121 HRPAIVAYDLKQPN-----YPEVVRYYFPTRLVE------------KPTYFGGFAVDVANPKGDCSETFVYITNFLRGAL  183 (381)
T ss_dssp             CCCEEEEEESSSTT-----CCEEEEEECCGGGCC------------CGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEE
T ss_pred             CCceEEEEECCCCC-----ceeEEEEECCHHhcc------------cCCccceEEEecccCCCCCCccEEEEEcCCCCcE
Confidence            46799999999872     127889999887664            4699999999954 33 79999999999999999


Q ss_pred             EEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEE
Q psy731          214 VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVV  293 (494)
Q Consensus       214 IVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliV  293 (494)
                      ||||+++|++||+.|++|+|| .++.|+|+|+.   |++++        ....|++.... .++...+|..-+       
T Consensus       184 IVydl~~~~swRv~~~~~~pd-~~~~~~i~G~~---~~~~~--------Gi~gIaLsp~~-~~~~~~LYf~pl-------  243 (381)
T 3q6k_A          184 FIYDHKKQDSWNVTHPTFKAE-RPTKFDYGGKE---YEFKA--------GIFGITLGDRD-SEGNRPAYYLAG-------  243 (381)
T ss_dssp             EEEETTTTEEEEEECGGGSCC-SCEEEEETTEE---EEECC--------CEEEEEECCCC-TTSCCEEEEEES-------
T ss_pred             EEEECCCCcEEEEccCCCccc-cCcceEECCEE---eEecc--------CceEEEecCCc-CCCCeEEEEEEC-------
Confidence            999999999999999999999 88999999887   66543        45667776431 233566776654       


Q ss_pred             EEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecc--eee--eeeccCCCCCceeEEEeeCCCcceEeeechhhcCCC
Q psy731          294 YNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTG--IHG--MSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRS  369 (494)
Q Consensus       294 ydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~G--i~g--IaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~  369 (494)
                         ...+-++|....+.-......+..-|+.     |  ..|  ++.++  .  ...|||..+....++...+.-   ..
T Consensus       244 ---ss~~ly~V~T~~L~~~~~~~~v~~~G~k-----g~~s~~~~~~~D~--~--~G~ly~~~~~~~aI~~w~~~~---~~  308 (381)
T 3q6k_A          244 ---SAIKVYSVNTKELKQKGGKLNPELLGNR-----GKYNDAIALAYDP--K--TKVIFFAEANTKQVSCWNTQK---MP  308 (381)
T ss_dssp             ---SCSEEEEEEHHHHSSTTCCCCCEEEEEC-----CTTCCEEEEEECT--T--TCEEEEEESSSSEEEEEETTS---CS
T ss_pred             ---CCCcEEEEEHHHhhCcchhhceEEeeec-----CCCCCcceEEEeC--C--CCeEEEEeccCCeEEEEeCCC---Cc
Confidence               4444555543322211122333333332     2  344  45532  2  249999999998898887741   01


Q ss_pred             cCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC
Q psy731          370 LDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV  409 (494)
Q Consensus       370 ~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~  409 (494)
                      +..    +.++.+..-....-.+++.+| .+|.||+..-.
T Consensus       309 ~~~----~n~~~l~~d~~l~~pd~~~i~-~~g~Lwv~sn~  343 (381)
T 3q6k_A          309 LRM----KNTDVVYTSSRFVFGTDISVD-SKGGLWFMSNG  343 (381)
T ss_dssp             BCG----GGEEEEEECTTCCSEEEEEEC-TTSCEEEEECS
T ss_pred             ccc----CceEEEEECCCccccCeEEEC-CCCeEEEEECc
Confidence            111    223333332123457899999 89999986533

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.53  E-value=2.2e-11  Score=115.98  Aligned_cols=271  Identities=9%  Similarity=0.094  Sum_probs=179.6

Q ss_pred             CCeeeeeee-eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeE
Q psy731           62 NCLPVSLDK-WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRL  140 (494)
Q Consensus        62 ~~~p~gv~v-~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~L  140 (494)
                      ..-|.++.+ .+|++|++-..     ...|..+..+ +          .+..++.       ...+..+.++.+|.+++|
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~-----~~~v~~~~~~-~----------~~~~~~~-------~~~~~~~~~i~~~~~g~l   75 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHK-----ANKISSLDQS-G----------RIKEFEV-------PTPDAKVMCLIVSSLGDI   75 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-S----------CEEEEEC-------SSTTCCEEEEEECTTSCE
T ss_pred             CCCcceeeECCCCCEEEEcCC-----CCeEEEECCC-C----------ceEEEEC-------CCCCCcceeEEECCCCCE
Confidence            456788888 47999998642     1245555432 1          2222221       123467889999999999


Q ss_pred             EEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC
Q psy731          141 WALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT  220 (494)
Q Consensus       141 wvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~  220 (494)
                      |+.+.+..        .|.+||.. +++ +++.++.     .......+++|      .++.+|+++...+.|.+||.+ 
T Consensus        76 ~v~~~~~~--------~v~~~d~~-g~~-~~~~~~~-----~~~~~~~i~~~------~~g~l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           76 WFTENGAN--------KIGKLSKK-GGF-TEYPLPQ-----PDSGPYGITEG------LNGDIWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             EEEETTTT--------EEEEECTT-SCE-EEEECSS-----TTCCEEEEEEC------STTCEEEEETTTTEEEEECTT-
T ss_pred             EEEecCCC--------eEEEECCC-CCe-EEecCCC-----CCCCCccceEC------CCCCEEEEccCCCeEEEECCC-
Confidence            99998766        79999988 666 4576665     33566777776      356799999999999999987 


Q ss_pred             CceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCc
Q psy731          221 NDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTND  300 (494)
Q Consensus       221 ~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~  300 (494)
                      ++..++..                             .........+++|.      ++.+|+++....+|.+||. +++
T Consensus       134 g~~~~~~~-----------------------------~~~~~~~~~i~~d~------~g~l~v~~~~~~~i~~~~~-~g~  177 (300)
T 2qc5_A          134 GTIYEYDL-----------------------------PNKGSYPAFITLGS------DNALWFTENQNNSIGRITN-TGK  177 (300)
T ss_dssp             SCEEEEEC-----------------------------SSTTCCEEEEEECT------TSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCEEEccC-----------------------------CCCCCCceeEEECC------CCCEEEEecCCCeEEEECC-CCc
Confidence            76654421                             01123456677773      2349999988889999998 555


Q ss_pred             EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceE
Q psy731          301 SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFK  380 (494)
Q Consensus       301 swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~  380 (494)
                      .-++..+    .+              .....+|+++++     ..||+....+..++.+..    +...         .
T Consensus       178 ~~~~~~~----~~--------------~~~~~~i~~d~~-----g~l~v~~~~~~~i~~~~~----~g~~---------~  221 (300)
T 2qc5_A          178 LEEYPLP----TN--------------AAAPVGITSGND-----GALWFVEIMGNKIGRITT----TGEI---------S  221 (300)
T ss_dssp             EEEEECS----ST--------------TCCEEEEEECTT-----SSEEEEETTTTEEEEECT----TCCE---------E
T ss_pred             EEEeeCC----CC--------------CCCcceEEECCC-----CCEEEEccCCCEEEEEcC----CCcE---------E
Confidence            4333211    00              023567999864     279998776667877754    1111         1


Q ss_pred             EecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEec
Q psy731          381 VMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       381 ~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsn  458 (494)
                      .+...+......++++| .+|+||++....+.|.++++++  .+     ..... +.....|.++.+|++|.||+.+.
T Consensus       222 ~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~g--~~-----~~~~~-~~~~~~~~~i~~~~~g~l~v~~~  290 (300)
T 2qc5_A          222 EYDIPTPNARPHAITAG-KNSEIWFTEWGANQIGRITNDN--TI-----QEYQL-QTENAEPHGITFGKDGSVWFALK  290 (300)
T ss_dssp             EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTTS--CE-----EEEEC-CSTTCCCCCEEECTTSCEEEECS
T ss_pred             EEECCCCCCCceEEEEC-CCCCEEEeccCCCeEEEECCCC--cE-----EEEEC-CccCCccceeEeCCCCCEEEEcc
Confidence            11001112345689999 7899999999999999999965  33     12211 12345799999999999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.53  E-value=1.5e-11  Score=121.38  Aligned_cols=259  Identities=12%  Similarity=0.110  Sum_probs=167.6

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ....++.+|+.++||+.|....        +|++||..+ ++...+.++.        ....+++|      .++.+||+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~--------~I~~~d~~g-~~~~~~~~~~--------~p~gia~~------~dG~l~va   88 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVG--------EIVSITPDG-NQQIHATVEG--------KVSGLAFT------SNGDLVAT   88 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTT--------EEEEECTTC-CEEEEEECSS--------EEEEEEEC------TTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCC--------eEEEECCCC-ceEEEEeCCC--------CceeEEEc------CCCcEEEE
Confidence            4567889999999999998765        899999876 4555555443        35667775      34559999


Q ss_pred             eCCCC--eEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          207 DSGHN--HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       207 Ds~~~--~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      |.+..  .|+++|..+|+..++...                             ......+.+++.      .+..+|++
T Consensus        89 d~~~~~~~v~~~d~~~g~~~~~~~~-----------------------------~~~~~~~g~~~~------~~~~~~v~  133 (306)
T 2p4o_A           89 GWNADSIPVVSLVKSDGTVETLLTL-----------------------------PDAIFLNGITPL------SDTQYLTA  133 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEEC-----------------------------TTCSCEEEEEES------SSSEEEEE
T ss_pred             eccCCcceEEEEcCCCCeEEEEEeC-----------------------------CCccccCccccc------CCCcEEEE
Confidence            97754  599999999987666210                             111223344442      24678999


Q ss_pred             cCCCCeEEEEEcCCCc--EEEEecCCccc-CCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeee
Q psy731          285 DSGHNHIVVYNYRTND--SHIIHHNYLHF-DPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVT  361 (494)
Q Consensus       285 D~~~~gliVydl~~~~--swrv~~~~~~~-dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~  361 (494)
                      |.....|.++|..+++  .|+.. ..... .+. .       .+   .+.+||  +|+    +++||+.-....+++++.
T Consensus       134 d~~~g~i~~~d~~~~~~~v~~~~-~~~~~~~~~-~-------~~---~~pngi--s~d----g~~lyv~d~~~~~I~~~~  195 (306)
T 2p4o_A          134 DSYRGAIWLIDVVQPSGSIWLEH-PMLARSNSE-S-------VF---PAANGL--KRF----GNFLYVSNTEKMLLLRIP  195 (306)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEEC-GGGSCSSTT-C-------CS---CSEEEE--EEE----TTEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEEEeCCCCcEeEEEEC-Ccccccccc-C-------CC---CcCCCc--CcC----CCEEEEEeCCCCEEEEEE
Confidence            9888899999988653  33322 21111 110 0       11   134566  665    369999888888888887


Q ss_pred             chhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      .+-  +..+.      ..+.+.+.   ...+|+++| .+|+||+++...+.|.++++++  .+     ..+..-...+.+
T Consensus       196 ~~~--~g~~~------~~~~~~~~---~~P~gi~vd-~dG~l~va~~~~~~V~~~~~~G--~~-----~~~~~~~~~~~~  256 (306)
T 2p4o_A          196 VDS--TDKPG------EPEIFVEQ---TNIDDFAFD-VEGNLYGATHIYNSVVRIAPDR--ST-----TIIAQAEQGVIG  256 (306)
T ss_dssp             BCT--TSCBC------CCEEEEES---CCCSSEEEB-TTCCEEEECBTTCCEEEECTTC--CE-----EEEECGGGTCTT
T ss_pred             eCC--CCCCC------ccEEEecc---CCCCCeEEC-CCCCEEEEeCCCCeEEEECCCC--CE-----EEEeecccccCC
Confidence            642  12211      12223321   246899999 7999999999999999999987  32     222221123678


Q ss_pred             ccceEEc---CC-ceEEEEecCchhhhcCCCCCCcccEEEEEEech
Q psy731          442 PSDIRVD---RT-GVLWVLSNKLPVFLYSKLKPEDINVRIFKSTVR  483 (494)
Q Consensus       442 pd~~~id---~~-g~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~~  483 (494)
                      |.++.++   ++ +.|||+++.-   .+...+.....-.|+|+++.
T Consensus       257 p~~~a~~g~~~d~~~LyVt~~~~---~~~~~~~~~~~g~v~~i~~~  299 (306)
T 2p4o_A          257 STAVAFGQTEGDCTAIYVVTNGG---MFLPPPTGVVPANVVRLEVG  299 (306)
T ss_dssp             EEEEEECCSTTTTTEEEEEECTT---SSSCCTTCCCCEEEEEEECS
T ss_pred             ceEEEEecccCCCCEEEEECCCC---cccCCCcccccceEEEEecC
Confidence            9999997   56 5899998752   11112223445679999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.49  E-value=5e-12  Score=132.84  Aligned_cols=248  Identities=11%  Similarity=0.081  Sum_probs=161.9

Q ss_pred             cCCCceEEeeEEEcC---CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCC
Q psy731          122 EARNLTSVVKVQSDP---CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANC  198 (494)
Q Consensus       122 ~~~~lvsV~~i~iD~---~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c  198 (494)
                      .|.+|.++.++.+|+   .++|||.|.+ .        +|.++|+.++++.....        .....+.+++|.     
T Consensus       134 ~a~~~~~P~gvavd~~s~~g~Lyv~D~~-~--------~I~~id~~~g~v~~~~~--------~~~~P~giavd~-----  191 (433)
T 4hw6_A          134 DCGAFDNIWRMMFDPNSNYDDLYWVGQR-D--------AFRHVDFVNQYVDIKTT--------NIGQCADVNFTL-----  191 (433)
T ss_dssp             SCCCCSCCCEEEECTTTTTCEEEEECBT-S--------CEEEEETTTTEEEEECC--------CCSCEEEEEECT-----
T ss_pred             HhcccCCCceEEEccccCCCEEEEEeCC-C--------CEEEEECCCCEEEEeec--------CCCCccEEEECC-----
Confidence            355799999999997   4999999998 3        79999999988865321        345677888873     


Q ss_pred             CCcEEEEeeCCC----CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecC
Q psy731          199 DNAFLYIADSGH----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSA  274 (494)
Q Consensus       199 ~~~~vYItDs~~----~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~  274 (494)
                       ++.+||+|...    .++++++...+..+..                              .........++++|.   
T Consensus       192 -dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~------------------------------~~~~~~~P~giavd~---  237 (433)
T 4hw6_A          192 -NGDMVVVDDQSSDTNTGIYLFTRASGFTERL------------------------------SLCNARGAKTCAVHP---  237 (433)
T ss_dssp             -TCCEEEEECCSCTTSEEEEEECGGGTTCCEE------------------------------EEEECSSBCCCEECT---
T ss_pred             -CCCEEEEcCCCCcccceEEEEECCCCeeccc------------------------------cccccCCCCEEEEeC---
Confidence             33399999854    3566666543332211                              011233467788884   


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCcE-EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC
Q psy731          275 NCDDAFLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA  353 (494)
Q Consensus       275 ~c~~~~~YI~D~~~~gliVydl~~~~s-wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls  353 (494)
                        .++.+|++|...+.|.++|..++.. ..+.....  .+                .-++||++|++    ++||+.-..
T Consensus       238 --~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--~~----------------~~~~ia~dpdG----~~LYvad~~  293 (433)
T 4hw6_A          238 --QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--KG----------------SNFHIVWHPTG----DWAYIIYNG  293 (433)
T ss_dssp             --TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--CS----------------SCEEEEECTTS----SEEEEEETT
T ss_pred             --CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--CC----------------CcccEEEeCCC----CEEEEEeCC
Confidence              2578999999999999999987765 43321110  00                12469999873    689998888


Q ss_pred             CcceEeeech----hhcCCCc-CccccccceE-EecccCCCCCCCeEEe---------eCCCCeEEEeccCCCeEEEEeC
Q psy731          354 STTEFAVTTK----VLQNRSL-DFSRSNFDFK-VMGSRGTGSQSGASSL---------DEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       354 s~~ly~V~T~----~L~~~~~-~~~~~~~~v~-~~G~~G~~~qs~g~~~---------D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      ..+++++...    .|..... ....-...+. -.+.........|+++         | ..|+||+++...+.|.++++
T Consensus       294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECT
T ss_pred             CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECC
Confidence            8888887632    2211110 0000000000 0001111234567999         8 89999999999999999999


Q ss_pred             CCCccccccceeeeeec---------------CCeEecccceEEc-CCceEEEEe
Q psy731          419 FRGEEYNEKSMGLVAED---------------NATLIYPSDIRVD-RTGVLWVLS  457 (494)
Q Consensus       419 ~~~~~~~~~~~~~v~~d---------------~~~l~~pd~~~id-~~g~Lwvls  457 (494)
                      ++  .     +.+++-.               ..+|.+|.++.+| .+|.|||.-
T Consensus       373 ~G--~-----v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD  420 (433)
T 4hw6_A          373 EG--R-----VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGD  420 (433)
T ss_dssp             TS--E-----EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred             CC--C-----EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEe
Confidence            77  3     2333321               2368999999999 899999984

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.49  E-value=1.9e-11  Score=117.40  Aligned_cols=240  Identities=10%  Similarity=0.080  Sum_probs=158.7

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ..+.++.++.+|+.++|||.|.+..        .|.+||+. ++.++++..+.. .....+....++++-     .++.+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~--------~i~~~d~~-g~~~~~~~~~~~-~~~~~~~p~~i~~~~-----~~g~l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNH--------RIQIFDKE-GRFKFQFGECGK-RDSQLLYPNRVAVVR-----NSGDI   91 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGT--------EEEEECTT-SCEEEEECCBSS-STTCBSSEEEEEEET-----TTTEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCC--------EEEEECCC-CcEEEEecccCC-CcccccCceEEEEEc-----CCCeE
Confidence            4578899999999999999998766        89999987 666666643220 001123455666641     57899


Q ss_pred             EEeeCC-CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          204 YIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       204 YItDs~-~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      ||+|.. .+.|.+||.+....+++..                              ........|++|.      ++.+|
T Consensus        92 ~v~~~~~~~~i~~~d~~g~~~~~~~~------------------------------~~~~~~~~i~~~~------~g~l~  135 (286)
T 1q7f_A           92 IVTERSPTHQIQIYNQYGQFVRKFGA------------------------------TILQHPRGVTVDN------KGRII  135 (286)
T ss_dssp             EEEECGGGCEEEEECTTSCEEEEECT------------------------------TTCSCEEEEEECT------TSCEE
T ss_pred             EEEcCCCCCEEEEECCCCcEEEEecC------------------------------ccCCCceEEEEeC------CCCEE
Confidence            999975 7889999944333333311                              0112356777773      34599


Q ss_pred             EecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          283 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       283 I~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      ++|.....|.+||......+.+....-                  .....+|+++|+   |  .||+.-.....++....
T Consensus       136 v~~~~~~~i~~~~~~g~~~~~~~~~~~------------------~~~p~~i~~~~~---g--~l~v~~~~~~~i~~~~~  192 (286)
T 1q7f_A          136 VVECKVMRVIIFDQNGNVLHKFGCSKH------------------LEFPNGVVVNDK---Q--EIFISDNRAHCVKVFNY  192 (286)
T ss_dssp             EEETTTTEEEEECTTSCEEEEEECTTT------------------CSSEEEEEECSS---S--EEEEEEGGGTEEEEEET
T ss_pred             EEECCCCEEEEEcCCCCEEEEeCCCCc------------------cCCcEEEEECCC---C--CEEEEECCCCEEEEEcC
Confidence            999988999999977655555432210                  023567999885   2  58886654446665542


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCC-eEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKS-GVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      +    .        ..++.++..|......++++| .+|+||+++...+ .|.+|++++  .+    +..+... .....
T Consensus       193 ~----g--------~~~~~~~~~g~~~~p~~i~~d-~~G~l~v~~~~~~~~i~~~~~~g--~~----~~~~~~~-~~~~~  252 (286)
T 1q7f_A          193 E----G--------QYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQDG--QL----ISALESK-VKHAQ  252 (286)
T ss_dssp             T----C--------CEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTTS--CE----EEEEEES-SCCSC
T ss_pred             C----C--------CEEEEEccCCccCCCcEEEEC-CCCCEEEEeCCCCEEEEEECCCC--CE----EEEEccc-CCCCc
Confidence            1    1        122333333322446789999 7899999999887 999999887  32    3344332 33456


Q ss_pred             ccceEEcCCceEEEEe
Q psy731          442 PSDIRVDRTGVLWVLS  457 (494)
Q Consensus       442 pd~~~id~~g~Lwvls  457 (494)
                      |.++.++++|.|||.+
T Consensus       253 ~~~i~~~~~g~l~vs~  268 (286)
T 1q7f_A          253 CFDVALMDDGSVVLAS  268 (286)
T ss_dssp             EEEEEEETTTEEEEEE
T ss_pred             ceeEEECCCCcEEEEC
Confidence            8899999999999984

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.47  E-value=3.1e-11  Score=114.88  Aligned_cols=230  Identities=10%  Similarity=0.108  Sum_probs=158.0

Q ss_pred             CceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          125 NLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      .+..+.++.+|++++|||.+.+..        .|.+||.. +++.+ +.++.     .......+++|      .++.+|
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~--------~v~~~~~~-~~~~~-~~~~~-----~~~~~~~i~~~------~~g~l~   76 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKAN--------KISSLDQS-GRIKE-FEVPT-----PDAKVMCLIVS------SLGDIW   76 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTT--------EEEEECTT-SCEEE-EECSS-----TTCCEEEEEEC------TTSCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCC--------eEEEECCC-CceEE-EECCC-----CCCcceeEEEC------CCCCEE
Confidence            456778899999999999998765        89999988 66553 66664     33556677776      466799


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +++...+.|.+||.. ++..++..                             .........+++|.      ++.+|++
T Consensus        77 v~~~~~~~v~~~d~~-g~~~~~~~-----------------------------~~~~~~~~~i~~~~------~g~l~v~  120 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGFTEYPL-----------------------------PQPDSGPYGITEGL------NGDIWFT  120 (300)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEC-----------------------------SSTTCCEEEEEECS------TTCEEEE
T ss_pred             EEecCCCeEEEECCC-CCeEEecC-----------------------------CCCCCCCccceECC------CCCEEEE
Confidence            999999999999988 76654421                             01123456777773      3568999


Q ss_pred             cCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV  364 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~  364 (494)
                      +....+|.+||.+ ++..++....    +              .....+|+++++   |  .||+....+..++++..  
T Consensus       121 ~~~~~~i~~~~~~-g~~~~~~~~~----~--------------~~~~~~i~~d~~---g--~l~v~~~~~~~i~~~~~--  174 (300)
T 2qc5_A          121 QLNGDRIGKLTAD-GTIYEYDLPN----K--------------GSYPAFITLGSD---N--ALWFTENQNNSIGRITN--  174 (300)
T ss_dssp             ETTTTEEEEECTT-SCEEEEECSS----T--------------TCCEEEEEECTT---S--SEEEEETTTTEEEEECT--
T ss_pred             ccCCCeEEEECCC-CCEEEccCCC----C--------------CCCceeEEECCC---C--CEEEEecCCCeEEEECC--
Confidence            9888899999987 5544333111    0              023567999875   2  49998776667877753  


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccc
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSD  444 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~  444 (494)
                        +...         ..+...+......++++| .+|+||++....+.|.++++++  .+     ..+.. +..+..|.+
T Consensus       175 --~g~~---------~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~~g--~~-----~~~~~-~~~~~~~~~  234 (300)
T 2qc5_A          175 --TGKL---------EEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITTTG--EI-----SEYDI-PTPNARPHA  234 (300)
T ss_dssp             --TCCE---------EEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECTTC--CE-----EEEEC-SSTTCCEEE
T ss_pred             --CCcE---------EEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcCCC--cE-----EEEEC-CCCCCCceE
Confidence              1111         111111112346789999 7899999999999999999965  32     12211 123567999


Q ss_pred             eEEcCCceEEEEe
Q psy731          445 IRVDRTGVLWVLS  457 (494)
Q Consensus       445 ~~id~~g~Lwvls  457 (494)
                      +.+|++|.|||.+
T Consensus       235 i~~d~~g~l~v~~  247 (300)
T 2qc5_A          235 ITAGKNSEIWFTE  247 (300)
T ss_dssp             EEECSTTCEEEEE
T ss_pred             EEECCCCCEEEec
Confidence            9999999999997

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=8e-12  Score=124.24  Aligned_cols=266  Identities=11%  Similarity=0.083  Sum_probs=166.6

Q ss_pred             CceEEeeEEEcCCCeEEEEeCCCCC-------C---------CCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccc
Q psy731          125 NLTSVVKVQSDPCDRLWALDSGVVE-------G---------KMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSN  188 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~LwvlD~G~~~-------~---------~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d  188 (494)
                      .|-.|.++.+|++++|||.|.+...       .         .......|.++|..++++++.+.- .     .-....+
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~-~-----~~~~p~g   95 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK-N-----LFYLPHG   95 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT-T-----TCSSEEE
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC-C-----ccCCceE
Confidence            4778999999999999999988731       0         011224799999999999875531 1     2234567


Q ss_pred             eEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC--ceeEEecCccccCCCCCccccCCccceeeeeccccccccccccee
Q psy731          189 MVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN--DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN  266 (494)
Q Consensus       189 ~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~--~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~  266 (494)
                      +++|      .++.+|++|+..+.|.+||....  ..+.+.....           .|..           ........+
T Consensus        96 ia~d------~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-----------~g~~-----------~~~~~~P~~  147 (329)
T 3fvz_A           96 LSID------TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-----------PGSD-----------QNHFCQPTD  147 (329)
T ss_dssp             EEEC------TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-----------CCCS-----------TTCCSSEEE
T ss_pred             EEEC------CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-----------CCCC-----------ccccCCCcE
Confidence            7786      35569999999999999998665  3444421000           0000           011124567


Q ss_pred             eEEeeecCCCCCcEEEEecC-CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCce
Q psy731          267 MVVDVTSANCDDAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFR  345 (494)
Q Consensus       267 i~VD~~~~~c~~~~~YI~D~-~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r  345 (494)
                      |++|.     +++.+|++|. ..+.|.+||......+.+........+..+       .+.   ...|||++|+    ..
T Consensus       148 ia~~~-----~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~-------~~~---~p~gia~d~~----~g  208 (329)
T 3fvz_A          148 VAVEP-----STGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPG-------QFS---VPHSLALVPH----LD  208 (329)
T ss_dssp             EEECT-----TTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTT-------EES---CEEEEEEETT----TT
T ss_pred             EEEeC-----CCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCc-------ccC---CCcEEEEECC----CC
Confidence            88874     2578999997 789999999665555555433221111111       222   2467999986    25


Q ss_pred             eEEEeeCCCcceEeeech---hhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc
Q psy731          346 VMYFHPLASTTEFAVTTK---VLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGE  422 (494)
Q Consensus       346 ~LYf~plss~~ly~V~T~---~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~  422 (494)
                      .||+.-....++..+..+   .++.-.  .......+..+.      .+.|++++ .+|++|+++...+.|..|+..+|+
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~--~~~~~~~~~~~~------~~pg~~~~-~~g~~~v~~~~~~~v~~~~~~~g~  279 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTKEFVREIK--HASFGRNVFAIS------YIPGFLFA-VNGKPYFGDQEPVQGFVMNFSSGE  279 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEC--CTTTTTCEEEEE------EETTEEEE-EECCCCTTCSCCCCEEEEETTTCC
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEe--ccccCCCcceee------ecCCEEEE-eCCCEEeccCCCcEEEEEEcCCCe
Confidence            899987776666555432   111100  000000000000      01167777 688999999999999999977642


Q ss_pred             cccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          423 EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       423 ~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                           -+..+......+.+|.++.++++|.|||..
T Consensus       280 -----~~~~~~~~~~~~~~p~~ia~~~dG~lyvad  309 (329)
T 3fvz_A          280 -----IIDVFKPVRKHFDMPHDIVASEDGTVYIGD  309 (329)
T ss_dssp             -----EEEEECCSSSCCSSEEEEEECTTSEEEEEE
T ss_pred             -----EEEEEcCCCCccCCeeEEEECCCCCEEEEE
Confidence                 123443334678999999999999999985

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.44  E-value=7.4e-11  Score=122.50  Aligned_cols=239  Identities=16%  Similarity=0.146  Sum_probs=161.7

Q ss_pred             CceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          125 NLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      .|.++..+.+|+.++||+.|.+..        +|.+||+.++++........        ... ++++.     .+..+|
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~--------~I~~id~~~g~~~~~~~~~~--------~~~-ia~~~-----~g~~l~  186 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDP--------RVRLISVDDNKVTTVHPGFK--------GGK-PAVTK-----DKQRVY  186 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTT--------EEEEEETTTTEEEEEEETCC--------BCB-CEECT-----TSSEEE
T ss_pred             ccCCceEEEEeCCCCEEEEecCCC--------cEEEEECCCCEEEEeeccCC--------CCc-eeEec-----CCCcEE
Confidence            588999999999999999999765        89999999998876443211        122 66653     567999


Q ss_pred             EeeCCCC-eEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          205 IADSGHN-HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       205 ItDs~~~-~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      ++|.... .|.++|...+...+.-.. .                         .........++++|.     +++.+|+
T Consensus       187 ~~d~~~~~~I~~~d~~~~~~~~~~g~-~-------------------------~~~~~~~p~~iav~p-----~~g~lyv  235 (409)
T 3hrp_A          187 SIGWEGTHTVYVYMKASGWAPTRIGQ-L-------------------------GSTFSGKIGAVALDE-----TEEWLYF  235 (409)
T ss_dssp             EEBSSTTCEEEEEEGGGTTCEEEEEE-C-------------------------CTTSCSCCCBCEECT-----TSSEEEE
T ss_pred             EEecCCCceEEEEEcCCCceeEEeee-c-------------------------cchhcCCcEEEEEeC-----CCCeEEE
Confidence            9999765 899999887765333100 0                         000223456788874     3688999


Q ss_pred             ecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeeccee---eeeeccCCCCCceeEEEeeCCCcceEee
Q psy731          284 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIH---GMSLSPLTRDNFRVMYFHPLASTTEFAV  360 (494)
Q Consensus       284 ~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~---gIaLsp~~~~g~r~LYf~plss~~ly~V  360 (494)
                      +|. ...|.+||.+++..-.+.......                ..+..   +|+++|+    +..||+.-....+++++
T Consensus       236 ~d~-~~~I~~~d~~~~~~~~~~~~~~~g----------------~~~~~P~~~ia~~p~----~g~lyv~d~~~~~I~~~  294 (409)
T 3hrp_A          236 VDS-NKNFGRFNVKTQEVTLIKQLELSG----------------SLGTNPGPYLIYYFV----DSNFYMSDQNLSSVYKI  294 (409)
T ss_dssp             ECT-TCEEEEEETTTCCEEEEEECCCCS----------------CCCCSSCCEEEEETT----TTEEEEEETTTTEEEEE
T ss_pred             EEC-CCcEEEEECCCCCEEEEecccccC----------------CCCCCccccEEEeCC----CCEEEEEeCCCCEEEEE
Confidence            886 557999999887643332111100                01122   7999985    25999987777788877


Q ss_pred             echhhcCCCcCccccccceEEeccc------------CCCCCCCeEEeeCCCCeEEEecc-CCCeEEEEe-CCCCccccc
Q psy731          361 TTKVLQNRSLDFSRSNFDFKVMGSR------------GTGSQSGASSLDEETGVIFYALL-VKSGVGCWN-TFRGEEYNE  426 (494)
Q Consensus       361 ~T~~L~~~~~~~~~~~~~v~~~G~~------------G~~~qs~g~~~D~~~G~ly~~~~-~~~aI~~w~-~~~~~~~~~  426 (494)
                      ...    ...        ....|..            .......|+++| .+|+||+++. ..+.|.+|+ +++  .   
T Consensus       295 ~~~----g~~--------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d-~dG~lyvad~~~~~~I~~~~~~~G--~---  356 (409)
T 3hrp_A          295 TPD----GEC--------EWFCGSATQKTVQDGLREEALFAQPNGMTVD-EDGNFYIVDGFKGYCLRKLDILDG--Y---  356 (409)
T ss_dssp             CTT----CCE--------EEEEECTTCCSCBCEEGGGCBCSSEEEEEEC-TTCCEEEEETTTTCEEEEEETTTT--E---
T ss_pred             ecC----CCE--------EEEEeCCCCCCcCCCcccccEeCCCeEEEEe-CCCCEEEEeCCCCCEEEEEECCCC--E---
Confidence            532    110        0111111            112346799999 7899999999 999999999 544  2   


Q ss_pred             cceeeeeec------------CCeEecccceEEcCCceEEEEe
Q psy731          427 KSMGLVAED------------NATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       427 ~~~~~v~~d------------~~~l~~pd~~~id~~g~Lwvls  457 (494)
                        +.+++-.            ..+|.+|.++.+|++|.|||.-
T Consensus       357 --v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad  397 (409)
T 3hrp_A          357 --VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE  397 (409)
T ss_dssp             --EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred             --EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence              3344332            1358899999999999999985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=1.4e-11  Score=129.07  Aligned_cols=250  Identities=10%  Similarity=0.111  Sum_probs=159.0

Q ss_pred             cCCCceEEeeEEEc--CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCC
Q psy731          122 EARNLTSVVKVQSD--PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCD  199 (494)
Q Consensus       122 ~~~~lvsV~~i~iD--~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~  199 (494)
                      .|.+|.++..+.+|  ..++|||.|.+ .        +|.+||+.++++.....        ..+....+++|.     +
T Consensus       132 ~~~~~~~P~~lavdp~~~g~Lyv~d~~-~--------~I~~id~~~~~v~~~~~--------~~~~P~~ia~d~-----~  189 (430)
T 3tc9_A          132 DCGGFGGAVWLSFDPKNHNHLYLVGEQ-H--------PTRLIDFEKEYVSTVYS--------GLSKVRTICWTH-----E  189 (430)
T ss_dssp             GCBCCSCCCEEEEETTEEEEEEEEEBT-E--------EEEEEETTTTEEEEEEC--------CCSCEEEEEECT-----T
T ss_pred             HccCCCCCCEEEECCCCCCeEEEEeCC-C--------cEEEEECCCCEEEEEec--------CCCCcceEEEeC-----C
Confidence            46679999999999  46999999998 3        89999999988765332        345677888874     4


Q ss_pred             CcEEEEeeCCCC----eEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC
Q psy731          200 NAFLYIADSGHN----HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN  275 (494)
Q Consensus       200 ~~~vYItDs~~~----~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~  275 (494)
                      +.++|++|...+    .+++++...+...+.                        +      +........+++|.    
T Consensus       190 G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~------------------------~------l~~~~~p~giavdp----  235 (430)
T 3tc9_A          190 ADSMIITNDQNNNDRPNNYILTRESGFKVIT------------------------E------LTKGQNCNGAETHP----  235 (430)
T ss_dssp             SSEEEEEECCSCTTSEEEEEEEGGGTSCSEE------------------------E------EEECSSCCCEEECT----
T ss_pred             CCEEEEEeCCCCcccceEEEEeCCCceeeee------------------------e------eccCCCceEEEEeC----
Confidence            568999998543    466666433222111                        0      01123356777874    


Q ss_pred             CCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          276 CDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       276 c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                       +++++|++|...+.|.+||..++....+...             .+     ..+-.|||++|+    +++||+.-..+.
T Consensus       236 -~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-------------~~-----~~~P~gia~~pd----G~~lyv~d~~~~  292 (430)
T 3tc9_A          236 -INGELYFNSWNAGQVFRYDFTTQETTPLFTI-------------QD-----SGWEFHIQFHPS----GNYAYIVVVNQH  292 (430)
T ss_dssp             -TTCCEEEEETTTTEEEEEETTTTEEEEEEEC-------------SS-----SSCCEEEEECTT----SSEEEEEETTTT
T ss_pred             -CCCEEEEEECCCCEEEEEECCCCcEEEEEEc-------------CC-----CCcceeEEEcCC----CCEEEEEECCCC
Confidence             2578999999999999999987654322110             00     012356999987    368999887777


Q ss_pred             ceEeeechh----hcCCCc-CccccccceE-EecccCCCCCCC-eEEeeC-------CCCeEEEeccCCCeEEEEeCCCC
Q psy731          356 TEFAVTTKV----LQNRSL-DFSRSNFDFK-VMGSRGTGSQSG-ASSLDE-------ETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       356 ~ly~V~T~~----L~~~~~-~~~~~~~~v~-~~G~~G~~~qs~-g~~~D~-------~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +++++...-    |..... ....-...+. -.+..+...... |+++|+       ..|+||+++...++|.++++++ 
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G-  371 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQG-  371 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTS-
T ss_pred             EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCC-
Confidence            888876432    111000 0000000000 000000112233 788841       5799999999999999999887 


Q ss_pred             ccccccceeeeeec---------------CCeEecccceEEcC-CceEEEEe
Q psy731          422 EEYNEKSMGLVAED---------------NATLIYPSDIRVDR-TGVLWVLS  457 (494)
Q Consensus       422 ~~~~~~~~~~v~~d---------------~~~l~~pd~~~id~-~g~Lwvls  457 (494)
                       .     +.+++-.               ..+|.+|.++.+|+ +|.|||.-
T Consensus       372 -~-----v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD  417 (430)
T 3tc9_A          372 -R-----VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGD  417 (430)
T ss_dssp             -E-----EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred             -c-----EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEE
Confidence             3     3344321               13588999999998 69999984

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.40  E-value=2.5e-10  Score=108.56  Aligned_cols=230  Identities=10%  Similarity=0.095  Sum_probs=155.8

Q ss_pred             CceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          125 NLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      .+..+.++.+|.+++||+.+.+..        .|.+||+. +++ +.+.++.     .......+++|      .++.+|
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~--------~v~~~d~~-~~~-~~~~~~~-----~~~~~~~i~~~------~~g~l~   71 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKAN--------MISCINLD-GKI-TEYPLPT-----PDAKVMCLTIS------SDGEVW   71 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTT--------EEEEECTT-CCE-EEEECSS-----TTCCEEEEEEC------TTSCEE
T ss_pred             cCCCccceEECCCCCEEEEecCCC--------cEEEEcCC-CCe-EEecCCc-----ccCceeeEEEC------CCCCEE
Confidence            356788999999999999988655        79999998 654 4566654     34566777776      467799


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +++...++|.+||.+ ++..++..                        +     ........|++|.      ++.+|++
T Consensus        72 v~~~~~~~i~~~~~~-g~~~~~~~------------------------~-----~~~~~~~~i~~~~------~g~l~v~  115 (299)
T 2z2n_A           72 FTENAANKIGRITKK-GIIKEYTL------------------------P-----NPDSAPYGITEGP------NGDIWFT  115 (299)
T ss_dssp             EEETTTTEEEEECTT-SCEEEEEC------------------------S-----STTCCEEEEEECT------TSCEEEE
T ss_pred             EeCCCCCeEEEECCC-CcEEEEeC------------------------C-----CcCCCceeeEECC------CCCEEEE
Confidence            999999999999986 55444421                        0     1122356677763      3568999


Q ss_pred             cCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV  364 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~  364 (494)
                      +....+|.++|. +++..++....    +              ...+.+|+++++     ..||+....+..++.+..  
T Consensus       116 ~~~~~~i~~~d~-~g~~~~~~~~~----~--------------~~~~~~i~~~~~-----g~l~v~~~~~~~i~~~~~--  169 (299)
T 2z2n_A          116 EMNGNRIGRITD-DGKIREYELPN----K--------------GSYPSFITLGSD-----NALWFTENQNNAIGRITE--  169 (299)
T ss_dssp             ETTTTEEEEECT-TCCEEEEECSS----T--------------TCCEEEEEECTT-----SCEEEEETTTTEEEEECT--
T ss_pred             ecCCceEEEECC-CCCEEEecCCC----C--------------CCCCceEEEcCC-----CCEEEEeCCCCEEEEEcC--
Confidence            988889999998 55544443211    0              023567999875     278987765567777754  


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccc
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSD  444 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~  444 (494)
                        +....      .+.  ...+ .....++++| ..|.||++....+.|.+||+.+  .+     ..+.. +.....|.+
T Consensus       170 --~g~~~------~~~--~~~~-~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~g--~~-----~~~~~-~~~~~~~~~  229 (299)
T 2z2n_A          170 --SGDIT------EFK--IPTP-ASGPVGITKG-NDDALWFVEIIGNKIGRITTSG--EI-----TEFKI-PTPNARPHA  229 (299)
T ss_dssp             --TCCEE------EEE--CSST-TCCEEEEEEC-TTSSEEEEETTTTEEEEECTTC--CE-----EEEEC-SSTTCCEEE
T ss_pred             --CCcEE------Eee--CCCC-CCcceeEEEC-CCCCEEEEccCCceEEEECCCC--cE-----EEEEC-CCCCCCcee
Confidence              11110      010  1111 2335689999 7899999999999999999944  32     22211 223467899


Q ss_pred             eEEcCCceEEEEe
Q psy731          445 IRVDRTGVLWVLS  457 (494)
Q Consensus       445 ~~id~~g~Lwvls  457 (494)
                      +.+|++|.|||..
T Consensus       230 i~~~~~g~l~v~~  242 (299)
T 2z2n_A          230 ITAGAGIDLWFTE  242 (299)
T ss_dssp             EEECSTTCEEEEE
T ss_pred             EEECCCCCEEEec
Confidence            9999999999996

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.39  E-value=6.2e-11  Score=112.08  Aligned_cols=226  Identities=14%  Similarity=0.140  Sum_probs=147.1

Q ss_pred             EEeeEEEcCCCeEEE-EeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          128 SVVKVQSDPCDRLWA-LDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       128 sV~~i~iD~~~~Lwv-lD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      .+.++.+|++++||| .|.+..        .|.+||..+..... +  +.    ........+++|      .++.+||+
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~--------~i~~~~~~~~~~~~-~--~~----~~~~~p~~i~~~------~~g~l~v~   83 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYG--------RVVKLATGSTGTTV-L--PF----NGLYQPQGLAVD------GAGTVYVT   83 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSC--------EEEEECC-----EE-C--CC----CSCCSCCCEEEC------TTCCEEEE
T ss_pred             CccceEECCCCCEEEEccCCCC--------cEEEecCCCcccce-E--ee----CCcCCcceeEEC------CCCCEEEE
Confidence            889999999999999 888766        79999987765432 2  11    122455677776      34569999


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      |. .+.|.+||...+..+.+..                              ........|++|.      ++.+|++|.
T Consensus        84 ~~-~~~i~~~d~~~~~~~~~~~------------------------------~~~~~p~~i~~~~------~g~l~v~~~  126 (270)
T 1rwi_B           84 DF-NNRVVTLAAGSNNQTVLPF------------------------------DGLNYPEGLAVDT------QGAVYVADR  126 (270)
T ss_dssp             ET-TTEEEEECTTCSCCEECCC------------------------------CSCSSEEEEEECT------TCCEEEEEG
T ss_pred             cC-CCEEEEEeCCCceEeeeec------------------------------CCcCCCcceEECC------CCCEEEEEC
Confidence            99 7899999988776654411                              0112356677773      345999998


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhc
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQ  366 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~  366 (494)
                      ....|.+++..+..........                   .....+|+++++   |  .||+....+..++.+..+-- 
T Consensus       127 ~~~~i~~~~~~~~~~~~~~~~~-------------------~~~p~~i~~~~~---g--~l~v~~~~~~~i~~~~~~~~-  181 (270)
T 1rwi_B          127 GNNRVVKLAAGSKTQTVLPFTG-------------------LNDPDGVAVDNS---G--NVYVTDTDNNRVVKLEAESN-  181 (270)
T ss_dssp             GGTEEEEECTTCCSCEECCCCS-------------------CCSCCCEEECTT---C--CEEEEEGGGTEEEEECTTTC-
T ss_pred             CCCEEEEEECCCceeEeecccc-------------------CCCceeEEEeCC---C--CEEEEECCCCEEEEEecCCC-
Confidence            8889999976554432211110                   113566999875   3  49987765556776653210 


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceE
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIR  446 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~  446 (494)
                        .         .......+ .....++++| .+|+||+++...+.|.+|++++  ..    ... .. ...+..|.++.
T Consensus       182 --~---------~~~~~~~~-~~~p~~i~~d-~~g~l~v~~~~~~~v~~~~~~~--~~----~~~-~~-~~~~~~p~~i~  240 (270)
T 1rwi_B          182 --N---------QVVLPFTD-ITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGS--TT----STV-LP-FTGLNTPLAVA  240 (270)
T ss_dssp             --C---------EEECCCSS-CCSEEEEEEC-TTCCEEEEETTTSCEEEECTTC--SC----CEE-CC-CCSCSCEEEEE
T ss_pred             --c---------eEeecccC-CCCceEEEEC-CCCCEEEEECCCCcEEEEcCCC--Cc----cee-ec-cCCCCCceeEE
Confidence              0         01111111 1345789999 7899999999999999999987  22    111 12 13457899999


Q ss_pred             EcCCceEEEEe
Q psy731          447 VDRTGVLWVLS  457 (494)
Q Consensus       447 id~~g~Lwvls  457 (494)
                      ++++|.|||..
T Consensus       241 ~~~~g~l~v~~  251 (270)
T 1rwi_B          241 VDSDRTVYVAD  251 (270)
T ss_dssp             ECTTCCEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999999996

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.37  E-value=4.6e-10  Score=106.69  Aligned_cols=269  Identities=11%  Similarity=0.124  Sum_probs=176.6

Q ss_pred             CCeeeeeee-eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeE
Q psy731           62 NCLPVSLDK-WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRL  140 (494)
Q Consensus        62 ~~~p~gv~v-~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~L  140 (494)
                      ..-|.++.+ .+|+++++-..     ...|..+..+ +          .+..|+..       .....+.++.+|++++|
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~-----~~~v~~~d~~-~----------~~~~~~~~-------~~~~~~~~i~~~~~g~l   70 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHK-----ANMISCINLD-G----------KITEYPLP-------TPDAKVMCLTISSDGEV   70 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETT-----TTEEEEECTT-C----------CEEEEECS-------STTCCEEEEEECTTSCE
T ss_pred             CCCccceEECCCCCEEEEecC-----CCcEEEEcCC-C----------CeEEecCC-------cccCceeeEEECCCCCE
Confidence            456888888 48899998642     1245555432 1          22222210       11256788999999999


Q ss_pred             EEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC
Q psy731          141 WALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT  220 (494)
Q Consensus       141 wvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~  220 (494)
                      |+.+.+..        .|.+||.. +++ +.+.+|.     .......+.+|      .++.+|+++...++|.+||. +
T Consensus        71 ~v~~~~~~--------~i~~~~~~-g~~-~~~~~~~-----~~~~~~~i~~~------~~g~l~v~~~~~~~i~~~d~-~  128 (299)
T 2z2n_A           71 WFTENAAN--------KIGRITKK-GII-KEYTLPN-----PDSAPYGITEG------PNGDIWFTEMNGNRIGRITD-D  128 (299)
T ss_dssp             EEEETTTT--------EEEEECTT-SCE-EEEECSS-----TTCCEEEEEEC------TTSCEEEEETTTTEEEEECT-T
T ss_pred             EEeCCCCC--------eEEEECCC-CcE-EEEeCCC-----cCCCceeeEEC------CCCCEEEEecCCceEEEECC-C
Confidence            99998765        79999986 443 5566664     34566777776      35689999999999999998 7


Q ss_pred             CceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCc
Q psy731          221 NDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTND  300 (494)
Q Consensus       221 ~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~  300 (494)
                      ++..++..                             .........+++|.      ++.+|+++....+|.+||. +++
T Consensus       129 g~~~~~~~-----------------------------~~~~~~~~~i~~~~------~g~l~v~~~~~~~i~~~~~-~g~  172 (299)
T 2z2n_A          129 GKIREYEL-----------------------------PNKGSYPSFITLGS------DNALWFTENQNNAIGRITE-SGD  172 (299)
T ss_dssp             CCEEEEEC-----------------------------SSTTCCEEEEEECT------TSCEEEEETTTTEEEEECT-TCC
T ss_pred             CCEEEecC-----------------------------CCCCCCCceEEEcC------CCCEEEEeCCCCEEEEEcC-CCc
Confidence            76655521                             01122356677763      3578999988889999998 665


Q ss_pred             EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceE
Q psy731          301 SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFK  380 (494)
Q Consensus       301 swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~  380 (494)
                      .-++...    ..              .....+|+++++   |  .||+....+..++.+..    +..         ++
T Consensus       173 ~~~~~~~----~~--------------~~~~~~i~~~~~---g--~l~v~~~~~~~i~~~~~----~g~---------~~  216 (299)
T 2z2n_A          173 ITEFKIP----TP--------------ASGPVGITKGND---D--ALWFVEIIGNKIGRITT----SGE---------IT  216 (299)
T ss_dssp             EEEEECS----ST--------------TCCEEEEEECTT---S--SEEEEETTTTEEEEECT----TCC---------EE
T ss_pred             EEEeeCC----CC--------------CCcceeEEECCC---C--CEEEEccCCceEEEECC----CCc---------EE
Confidence            4433111    00              123567999875   2  58988766667777753    111         11


Q ss_pred             EecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          381 VMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       381 ~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      .+...+......++++| .+|+||++....+.|.+||+++  .+     ..+.. +.....|.++.+ .+|.||+.+
T Consensus       217 ~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~~g--~~-----~~~~~-~~~~~~~~~i~~-~~g~l~v~~  283 (299)
T 2z2n_A          217 EFKIPTPNARPHAITAG-AGIDLWFTEWGANKIGRLTSNN--II-----EEYPI-QIKSAEPHGICF-DGETIWFAM  283 (299)
T ss_dssp             EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEEETTT--EE-----EEEEC-SSSSCCEEEEEE-CSSCEEEEE
T ss_pred             EEECCCCCCCceeEEEC-CCCCEEEeccCCceEEEECCCC--ce-----EEEeC-CCCCCccceEEe-cCCCEEEEe
Confidence            11111112345789999 7899999999999999999965  33     22211 123457899999 899999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.30  E-value=2.2e-09  Score=104.94  Aligned_cols=257  Identities=12%  Similarity=0.094  Sum_probs=161.4

Q ss_pred             ceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          126 LTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       126 lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      ...+.++..|++++||+.|....        .|.+||+.++++.+....       .......+++|      .++.+|+
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~-------~~~~~~~i~~~------~dg~l~v  102 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEG--------NIFKINPETKEIKRPFVS-------HKANPAAIKIH------KDGRLFV  102 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTC--------EEEEECTTTCCEEEEEEC-------SSSSEEEEEEC------TTSCEEE
T ss_pred             CccccCcEECCCCCEEEEECCCC--------EEEEEeCCCCcEEEEeeC-------CCCCcceEEEC------CCCcEEE
Confidence            34567888999999999998765        899999999987653321       22345666665      3567999


Q ss_pred             eeCCC----CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731          206 ADSGH----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL  281 (494)
Q Consensus       206 tDs~~----~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~  281 (494)
                      ++...    .+|.+||.+++...++-..                            .......+++++|.      ++.+
T Consensus       103 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~----------------------------~~~~~~~~~i~~d~------~g~l  148 (333)
T 2dg1_A          103 CYLGDFKSTGGIFAATENGDNLQDIIED----------------------------LSTAYCIDDMVFDS------KGGF  148 (333)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEECS----------------------------SSSCCCEEEEEECT------TSCE
T ss_pred             EeCCCCCCCceEEEEeCCCCEEEEEEcc----------------------------CccCCcccceEECC------CCCE
Confidence            99877    7999999998887654110                            01123456777773      3457


Q ss_pred             EEecCC------CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          282 YIADSG------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       282 YI~D~~------~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                      |+++..      ..+|.++|.++++..++...                    .....+|+++|+    ++.||+......
T Consensus       149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------------------~~~~~~i~~~~d----g~~l~v~~~~~~  204 (333)
T 2dg1_A          149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--------------------ISVANGIALSTD----EKVLWVTETTAN  204 (333)
T ss_dssp             EEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--------------------ESSEEEEEECTT----SSEEEEEEGGGT
T ss_pred             EEEeccccccCCCceEEEEeCCCCEEEEeecC--------------------CCcccceEECCC----CCEEEEEeCCCC
Confidence            888864      35677787766554333210                    123567999987    368998765444


Q ss_pred             ceEeeechhhcCCCcCccccccc-eEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeee
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFD-FKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAE  434 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~-v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~  434 (494)
                      .++.++.+.  +... ....... +...  .+ .....++++| .+|+||++....+.|.+||+++  .    .+..+..
T Consensus       205 ~i~~~d~~~--~g~~-~~~~~~~~~~~~--~~-~~~~~~i~~d-~~G~l~v~~~~~~~v~~~d~~g--~----~~~~~~~  271 (333)
T 2dg1_A          205 RLHRIALED--DGVT-IQPFGATIPYYF--TG-HEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRG--Y----PIGQILI  271 (333)
T ss_dssp             EEEEEEECT--TSSS-EEEEEEEEEEEC--CS-SSEEEEEEEB-TTCCEEEEEETTTEEEEECTTS--C----EEEEEEC
T ss_pred             eEEEEEecC--CCcC-cccccceEEEec--CC-CCCCCceEEC-CCCCEEEEEcCCCEEEEECCCC--C----EEEEEEc
Confidence            666654321  1110 0000000 0001  11 1235789999 7899999998889999999976  2    1233322


Q ss_pred             c---CCeEecccceEEcCCc-eEEEEecCchhhhcCCCCCCcccEEEEEEech
Q psy731          435 D---NATLIYPSDIRVDRTG-VLWVLSNKLPVFLYSKLKPEDINVRIFKSTVR  483 (494)
Q Consensus       435 d---~~~l~~pd~~~id~~g-~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~~  483 (494)
                      .   +..+.+|.++.++++| .|||.+++=.         ....-.||++++.
T Consensus       272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~---------~~~~~~l~~~~~~  315 (333)
T 2dg1_A          272 PGRDEGHMLRSTHPQFIPGTNQLIICSNDIE---------MGGGSMLYTVNGF  315 (333)
T ss_dssp             TTGGGTCSCBCCEEEECTTSCEEEEEEECGG---------GTCCEEEEEEECS
T ss_pred             CCCccccccCcceEEECCCCCEEEEEeCccC---------CCCCceEEEEecc
Confidence            1   1123478999998875 8999987643         1235677777654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.28  E-value=1.9e-09  Score=111.00  Aligned_cols=225  Identities=17%  Similarity=0.203  Sum_probs=155.4

Q ss_pred             CceEEeeEEEc-CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          125 NLTSVVKVQSD-PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       125 ~lvsV~~i~iD-~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      .+..+.++..| ..++||+.|....        +|.++++.+..+...+.  .     .......++||.     .++.+
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~--------~I~r~~~~g~~~~~~~~--~-----~~~~p~glavd~-----~~g~l  173 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLD--------RILRANLNGSNVEEVVS--T-----GLESPGGLAVDW-----VHDKL  173 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTT--------EEEEEETTSCCEEEEEC--S-----SCSCCCCEEEET-----TTTEE
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCC--------cEEEEecCCCCcEEEEe--C-----CCCCccEEEEEe-----CCCeE
Confidence            45668899999 5789999999876        89999998876543221  1     233457899985     57899


Q ss_pred             EEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      |++|++.+.|.|+++.......+-.                              ......++|+||.     .++++|+
T Consensus       174 Y~~d~~~~~I~~~~~dg~~~~~l~~------------------------------~~l~~P~giavdp-----~~g~ly~  218 (386)
T 3v65_B          174 YWTDSGTSRIEVANLDGAHRKVLLW------------------------------QSLEKPRAIALHP-----MEGTIYW  218 (386)
T ss_dssp             EEEETTTTEEEECBTTSCSCEEEEC------------------------------SSCSCEEEEEEET-----TTTEEEE
T ss_pred             EEEcCCCCeEEEEeCCCCceEEeec------------------------------CCCCCCcEEEEEc-----CCCeEEE
Confidence            9999999999999987544333211                              1123468899984     3589999


Q ss_pred             ecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          284 ADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       284 ~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      +|.+. +.|.++++.......+....                +.+   -+|||++|+    .+.|||.-....+++++..
T Consensus       219 td~~~~~~I~r~~~dG~~~~~~~~~~----------------~~~---PnGlavd~~----~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          219 TDWGNTPRIEASSMDGSGRRIIADTH----------------LFW---PNGLTIDYA----GRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECSS----------------CSC---EEEEEEEGG----GTEEEEEETTTTEEEEECT
T ss_pred             eccCCCCEEEEEeCCCCCcEEEEECC----------------CCC---eeeEEEeCC----CCEEEEEECCCCEEEEEeC
Confidence            99887 88889988765433332211                112   367999986    3699998766667877753


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecc
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP  442 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~p  442 (494)
                      .    .+        ..+.+...+ .....|++++  .|.||+++...++|.++|..+|     +...+|..   .+..|
T Consensus       276 d----G~--------~~~~~~~~~-~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G-----~~~~~i~~---~~~~p  332 (386)
T 3v65_B          276 D----GS--------HRKAVISQG-LPHPFAITVF--EDSLYWTDWHTKSINSANKFTG-----KNQEIIRN---KLHFP  332 (386)
T ss_dssp             T----SC--------SCEEEECSS-CSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-----CSCEEEEC---SCSCC
T ss_pred             C----CC--------eeEEEEECC-CCCceEEEEE--CCEEEEeeCCCCeEEEEECCCC-----cceEEEcc---CCCCC
Confidence            2    11        111122211 2457899998  6799999999999999995443     23455553   36789


Q ss_pred             cceEEcCC
Q psy731          443 SDIRVDRT  450 (494)
Q Consensus       443 d~~~id~~  450 (494)
                      .++.+.+.
T Consensus       333 ~gi~v~~~  340 (386)
T 3v65_B          333 MDIHTLHP  340 (386)
T ss_dssp             CCEEEESG
T ss_pred             ceEEEEch
Confidence            99998654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.28  E-value=6.8e-09  Score=103.44  Aligned_cols=244  Identities=9%  Similarity=0.027  Sum_probs=161.1

Q ss_pred             CeeeeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEEE
Q psy731           63 CLPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWA  142 (494)
Q Consensus        63 ~~p~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~Lwv  142 (494)
                      ..|.++.+.++++|++...     ..+|..+..+..         -.+.-+|.          ...+..+.++.+++|||
T Consensus        44 ~~~~~i~~~~~~lyv~~~~-----~~~v~viD~~t~---------~~~~~i~~----------~~~p~~i~~~~~g~lyv   99 (328)
T 3dsm_A           44 DVAQSMVIRDGIGWIVVNN-----SHVIFAIDINTF---------KEVGRITG----------FTSPRYIHFLSDEKAYV   99 (328)
T ss_dssp             SCEEEEEEETTEEEEEEGG-----GTEEEEEETTTC---------CEEEEEEC----------CSSEEEEEEEETTEEEE
T ss_pred             ccceEEEEECCEEEEEEcC-----CCEEEEEECccc---------EEEEEcCC----------CCCCcEEEEeCCCeEEE
Confidence            5678888899999999853     236777775432         12233332          24466777766789999


Q ss_pred             EeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCC
Q psy731          143 LDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTN  221 (494)
Q Consensus       143 lD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~  221 (494)
                      .+....        .|.++|++|+++.+++..+.  ..........++++       ++.+|+++.+ .+.|.|+|.+++
T Consensus       100 ~~~~~~--------~v~~iD~~t~~~~~~i~~g~--~~~~~~~p~~i~~~-------~~~lyv~~~~~~~~v~viD~~t~  162 (328)
T 3dsm_A          100 TQIWDY--------RIFIINPKTYEITGYIECPD--MDMESGSTEQMVQY-------GKYVYVNCWSYQNRILKIDTETD  162 (328)
T ss_dssp             EEBSCS--------EEEEEETTTTEEEEEEECTT--CCTTTCBCCCEEEE-------TTEEEEEECTTCCEEEEEETTTT
T ss_pred             EECCCC--------eEEEEECCCCeEEEEEEcCC--ccccCCCcceEEEE-------CCEEEEEcCCCCCEEEEEECCCC
Confidence            996544        89999999999999888765  11122345667773       6789999985 889999999998


Q ss_pred             ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC----------CeE
Q psy731          222 DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH----------NHI  291 (494)
Q Consensus       222 ~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~----------~gl  291 (494)
                      +..+.-                               ..+.....+++|.      ++.+|+++.+.          ..|
T Consensus       163 ~~~~~i-------------------------------~~g~~p~~i~~~~------dG~l~v~~~~~~~~~~~~~~~~~v  205 (328)
T 3dsm_A          163 KVVDEL-------------------------------TIGIQPTSLVMDK------YNKMWTITDGGYEGSPYGYEAPSL  205 (328)
T ss_dssp             EEEEEE-------------------------------ECSSCBCCCEECT------TSEEEEEBCCBCTTCSSCBCCCEE
T ss_pred             eEEEEE-------------------------------EcCCCccceEEcC------CCCEEEEECCCccCCccccCCceE
Confidence            754320                               0112245566663      34578888765          689


Q ss_pred             EEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcC
Q psy731          292 VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLD  371 (494)
Q Consensus       292 iVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~  371 (494)
                      .++|.++++.-+...-     |       .|      .+..+|+++|+    ++.||+..-   .+|.+.++-.+   +.
T Consensus       206 ~~id~~t~~v~~~~~~-----~-------~g------~~p~~la~~~d----~~~lyv~~~---~v~~~d~~t~~---~~  257 (328)
T 3dsm_A          206 YRIDAETFTVEKQFKF-----K-------LG------DWPSEVQLNGT----RDTLYWINN---DIWRMPVEADR---VP  257 (328)
T ss_dssp             EEEETTTTEEEEEEEC-----C-------TT------CCCEEEEECTT----SCEEEEESS---SEEEEETTCSS---CC
T ss_pred             EEEECCCCeEEEEEec-----C-------CC------CCceeEEEecC----CCEEEEEcc---EEEEEECCCCc---ee
Confidence            9999988764321110     0       00      13567999987    378998542   67776653221   10


Q ss_pred             ccccccceEEecccCCCCCCCeEEeeCCCCeEEEec----cCCCeEEEEeCCC
Q psy731          372 FSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYAL----LVKSGVGCWNTFR  420 (494)
Q Consensus       372 ~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~----~~~~aI~~w~~~~  420 (494)
                      .    ..+-..+    .....|+++||.+|.||.++    ...+.|.+||+++
T Consensus       258 ~----~~~~~~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g  302 (328)
T 3dsm_A          258 V----RPFLEFR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQG  302 (328)
T ss_dssp             S----SCSBCCC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTC
T ss_pred             e----eeeecCC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCC
Confidence            0    0110011    13467999997799999999    7889999999996

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.28  E-value=4.7e-10  Score=110.89  Aligned_cols=243  Identities=11%  Similarity=0.062  Sum_probs=152.4

Q ss_pred             CceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCcc-------------ccccCCccceEE
Q psy731          125 NLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTD-------------YTEESKFSNMVV  191 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~-------------~~~~S~l~d~vV  191 (494)
                      .|....++.+|..+++|.+|....        +|++||..++++. .+..+....             .........+++
T Consensus        17 ~~~~p~~i~~d~~g~~l~v~~~~~--------~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~   87 (322)
T 2fp8_A           17 PSYAPNSFTFDSTNKGFYTSVQDG--------RVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY   87 (322)
T ss_dssp             SSSCCCCEECCTTCSSEEEECTTS--------EEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred             ccCCceEEEEcCCCCEEEEEcCCC--------eEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEE
Confidence            366778888998898555677655        8999999887654 344332100             001123456777


Q ss_pred             EeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEee
Q psy731          192 DVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDV  271 (494)
Q Consensus       192 D~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~  271 (494)
                      |.     .++.+||+|.. .+|.++|.+++....+....-                          -.+...++++++|.
T Consensus        88 ~~-----~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~--------------------------~~~~~~p~~i~~d~  135 (322)
T 2fp8_A           88 NL-----QNNQLYIVDCY-YHLSVVGSEGGHATQLATSVD--------------------------GVPFKWLYAVTVDQ  135 (322)
T ss_dssp             ET-----TTTEEEEEETT-TEEEEECTTCEECEEEESEET--------------------------TEECSCEEEEEECT
T ss_pred             cC-----CCCcEEEEECC-CCEEEEeCCCCEEEEecccCC--------------------------CCcccccceEEEec
Confidence            62     36789999987 459999988776544421000                          01123467888873


Q ss_pred             ecCCCCCcEEEEecCCC-----------------CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeee
Q psy731          272 TSANCDDAFLYIADSGH-----------------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGM  334 (494)
Q Consensus       272 ~~~~c~~~~~YI~D~~~-----------------~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gI  334 (494)
                      .     ++.+|++|...                 .+|++||.++++.-.+...                 +   ...+||
T Consensus       136 ~-----~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------------~---~~p~gi  190 (322)
T 2fp8_A          136 R-----TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-----------------L---HVPGGA  190 (322)
T ss_dssp             T-----TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-----------------E---SCCCEE
T ss_pred             C-----CCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccC-----------------C---ccCcce
Confidence            1     35799999752                 4588888776653222111                 1   235679


Q ss_pred             eeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC-----
Q psy731          335 SLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV-----  409 (494)
Q Consensus       335 aLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~-----  409 (494)
                      +++|+    ++.||+.-....+++++..+-   ...      ...+.+.+.  .+ .+|+++| .+|+||++...     
T Consensus       191 a~~~d----g~~lyv~d~~~~~I~~~~~~~---~~~------~~~~~~~~~--~g-P~gi~~d-~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          191 EVSAD----SSFVLVAEFLSHQIVKYWLEG---PKK------GTAEVLVKI--PN-PGNIKRN-ADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EECTT----SSEEEEEEGGGTEEEEEESSS---TTT------TCEEEEEEC--SS-EEEEEEC-TTSCEEEEEEEETTSS
T ss_pred             EECCC----CCEEEEEeCCCCeEEEEECCC---CcC------CccceEEeC--CC-CCCeEEC-CCCCEEEEecCccccc
Confidence            99987    368999876666777775431   111      122333332  13 6899999 89999999987     


Q ss_pred             -----CCeEEEEeCCCCccccccceeeeeecCC-eEecccceEEcCCceEEEEe
Q psy731          410 -----KSGVGCWNTFRGEEYNEKSMGLVAEDNA-TLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       410 -----~~aI~~w~~~~~~~~~~~~~~~v~~d~~-~l~~pd~~~id~~g~Lwvls  457 (494)
                           .+.|.++|+++  ..    +..+...+. .+.+|+++.. .+|+|||.+
T Consensus       254 ~~~~~~~~v~~~d~~G--~~----~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEFG--NI----LEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             TTSCEEEEEEEECTTS--CE----EEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             ccCCCccEEEEECCCC--CE----EEEEECCCCCccccceEEEE-eCCEEEEee
Confidence                 57899999987  32    233332211 2678998887 478999995

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.27  E-value=2.5e-09  Score=103.38  Aligned_cols=231  Identities=10%  Similarity=0.078  Sum_probs=147.7

Q ss_pred             CceEEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          125 NLTSVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ++....++..|++++ ||+.|....        .|.+||+.++  .+.+..+.       .....+++|      .++.+
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~--------~i~~~~~~~~--~~~~~~~~-------~~~~~l~~~------~dg~l   82 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQN--------RTWAWSDDGQ--LSPEMHPS-------HHQNGHCLN------KQGHL   82 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGT--------EEEEEETTSC--EEEEESSC-------SSEEEEEEC------TTCCE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCC--------EEEEEECCCC--eEEEECCC-------CCcceeeEC------CCCcE
Confidence            455677889999886 999998776        8999999988  56665443       334566665      35668


Q ss_pred             EEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      |+++.+.++|.+||.++|+..++.....                          ......++++++|.      ++.+|+
T Consensus        83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~------~G~l~v  130 (296)
T 3e5z_A           83 IACSHGLRRLERQREPGGEWESIADSFE--------------------------GKKLNSPNDVCLAP------DGSLWF  130 (296)
T ss_dssp             EEEETTTTEEEEECSTTCCEEEEECEET--------------------------TEECCCCCCEEECT------TSCEEE
T ss_pred             EEEecCCCeEEEEcCCCCcEEEEeeccC--------------------------CCCCCCCCCEEECC------CCCEEE
Confidence            9999999999999999998766621000                          01122356778873      356899


Q ss_pred             ecCC-----------------CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCcee
Q psy731          284 ADSG-----------------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRV  346 (494)
Q Consensus       284 ~D~~-----------------~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~  346 (494)
                      +|..                 ..+|..+|.. ++..++...                    .....||+++|++    +.
T Consensus       131 td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--------------------~~~~~gi~~s~dg----~~  185 (296)
T 3e5z_A          131 SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD--------------------RVKPNGLAFLPSG----NL  185 (296)
T ss_dssp             EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC--------------------CSSEEEEEECTTS----CE
T ss_pred             ECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC--------------------CCCCccEEECCCC----CE
Confidence            8752                 2366666655 333222111                    1124679999873    56


Q ss_pred             EEEeeCCCcceEeeechhhcCCCc-CccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcccc
Q psy731          347 MYFHPLASTTEFAVTTKVLQNRSL-DFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYN  425 (494)
Q Consensus       347 LYf~plss~~ly~V~T~~L~~~~~-~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~  425 (494)
                      | +......+++..+.+  .+..+ ..      .+.+ +. ......|+++| .+|+||++.  .+.|.+||+++  .  
T Consensus       186 l-v~~~~~~~i~~~~~~--~~g~~~~~------~~~~-~~-~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~g--~--  247 (296)
T 3e5z_A          186 L-VSDTGDNATHRYCLN--ARGETEYQ------GVHF-TV-EPGKTDGLRVD-AGGLIWASA--GDGVHVLTPDG--D--  247 (296)
T ss_dssp             E-EEETTTTEEEEEEEC--SSSCEEEE------EEEE-CC-SSSCCCSEEEB-TTSCEEEEE--TTEEEEECTTS--C--
T ss_pred             E-EEeCCCCeEEEEEEC--CCCcCcCC------CeEe-eC-CCCCCCeEEEC-CCCCEEEEc--CCeEEEECCCC--C--
Confidence            6 666555567666543  12221 10      1112 11 12346799999 899999999  78999999986  2  


Q ss_pred             ccceeeeeecCCeEecccceEEc-CCc-eEEEEecC
Q psy731          426 EKSMGLVAEDNATLIYPSDIRVD-RTG-VLWVLSNK  459 (494)
Q Consensus       426 ~~~~~~v~~d~~~l~~pd~~~id-~~g-~Lwvlsnr  459 (494)
                        .+..+... ..   |..+.++ ++| .|||.++.
T Consensus       248 --~~~~~~~~-~~---~~~~~f~~~d~~~L~v~t~~  277 (296)
T 3e5z_A          248 --ELGRVLTP-QT---TSNLCFGGPEGRTLYMTVST  277 (296)
T ss_dssp             --EEEEEECS-SC---CCEEEEESTTSCEEEEEETT
T ss_pred             --EEEEEECC-CC---ceeEEEECCCCCEEEEEcCC
Confidence              22333322 22   7888884 454 79999854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.26  E-value=7e-10  Score=106.93  Aligned_cols=243  Identities=10%  Similarity=0.063  Sum_probs=150.5

Q ss_pred             CceEEeeEEEcCCCeEEEE-------eCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCC
Q psy731          125 NLTSVVKVQSDPCDRLWAL-------DSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSAN  197 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~Lwvl-------D~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~  197 (494)
                      ++..+.++..|.+++||+.       |....        .|.+||++++++.. +..|.  ..........+.+|     
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~--------~i~~~d~~~g~~~~-~~~~~--~~~~~~~~~~i~~~-----   79 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAG--------EILRIDLKTGKKTV-ICKPE--VNGYGGIPAGCQCD-----   79 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECC--------EEEEECTTTCCEEE-EECCE--ETTEECCEEEEEEC-----
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCC--------EEEEEeCCCCcEEE-EEecc--cCCCCCCCceEEEe-----
Confidence            4556678889999999999       66554        79999999988753 44332  01122345566665     


Q ss_pred             CCC-cEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC
Q psy731          198 CDN-AFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN  275 (494)
Q Consensus       198 c~~-~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~  275 (494)
                       .+ +.+||++... +|.+||.+ ++..++ .....                          ........++++|.    
T Consensus        80 -~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~--------------------------~~~~~~~~~i~~d~----  126 (314)
T 1pjx_A           80 -RDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSE--------------------------GRRMQGCNDCAFDY----  126 (314)
T ss_dssp             -SSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTT--------------------------SCBCBCCCEEEECT----
T ss_pred             -cCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCC--------------------------CccccCCcCEEECC----
Confidence             34 7899999855 89999998 776544 21000                          01122356777773    


Q ss_pred             CCCcEEEEecCCC---------------CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeec---
Q psy731          276 CDDAFLYIADSGH---------------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLS---  337 (494)
Q Consensus       276 c~~~~~YI~D~~~---------------~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLs---  337 (494)
                        ++.+|+++...               .+|.++|.. ++.-++..                    -.....+|+++   
T Consensus       127 --~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--------------------~~~~~~~i~~~~~~  183 (314)
T 1pjx_A          127 --EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--------------------AFQFPNGIAVRHMN  183 (314)
T ss_dssp             --TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--------------------EESSEEEEEEEECT
T ss_pred             --CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--------------------CCCCcceEEEeccc
Confidence              35688998754               567777765 33222210                    01224678888   


Q ss_pred             -cCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCC-CCCCeEEeeCCCCeEEEeccCCCeEEE
Q psy731          338 -PLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTG-SQSGASSLDEETGVIFYALLVKSGVGC  415 (494)
Q Consensus       338 -p~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~-~qs~g~~~D~~~G~ly~~~~~~~aI~~  415 (494)
                       |+    ++.||+.......++....+  .+..+...   ..+..+...  . ....++++| ++|+||++....+.|.+
T Consensus       184 d~d----g~~l~v~~~~~~~i~~~~~~--~~g~~~~~---~~~~~~~~~--~~~~p~~i~~d-~~G~l~v~~~~~~~i~~  251 (314)
T 1pjx_A          184 DGR----PYQLIVAETPTKKLWSYDIK--GPAKIENK---KVWGHIPGT--HEGGADGMDFD-EDNNLLVANWGSSHIEV  251 (314)
T ss_dssp             TSC----EEEEEEEETTTTEEEEEEEE--ETTEEEEE---EEEEECCCC--SSCEEEEEEEB-TTCCEEEEEETTTEEEE
T ss_pred             CCC----CCEEEEEECCCCeEEEEECC--CCCccccc---eEEEECCCC--CCCCCCceEEC-CCCCEEEEEcCCCEEEE
Confidence             76    36899977665677766532  01111000   111111111  1 235789999 79999999998999999


Q ss_pred             EeCCCCccccccceeeeeecCCeEecccceEEcCCce-EEEEecC
Q psy731          416 WNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LWVLSNK  459 (494)
Q Consensus       416 w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvlsnr  459 (494)
                      ||+++| .+    ...+. . + ..+|.++.++++|. |||.++.
T Consensus       252 ~d~~~g-~~----~~~~~-~-~-~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          252 FGPDGG-QP----KMRIR-C-P-FEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             ECTTCB-SC----SEEEE-C-S-SSCEEEEEECTTSSEEEEEETT
T ss_pred             EcCCCC-cE----eEEEe-C-C-CCCceeEEECCCCCEEEEEeCC
Confidence            999843 22    12222 1 1 25789999999997 9998753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.26  E-value=3e-09  Score=108.03  Aligned_cols=224  Identities=17%  Similarity=0.209  Sum_probs=153.5

Q ss_pred             CceEEeeEEEc-CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          125 NLTSVVKVQSD-PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       125 ~lvsV~~i~iD-~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      .+..+.++..| ..++||+.|....        +|.++++.+......+.  .     +-.....++||.     .++.+
T Consensus        71 ~~~~~~~l~~d~~~~~ly~~D~~~~--------~I~r~~~~g~~~~~~~~--~-----~~~~p~glavd~-----~~g~l  130 (349)
T 3v64_C           71 NLENAIALDFHHRRELVFWSDVTLD--------RILRANLNGSNVEEVVS--T-----GLESPGGLAVDW-----VHDKL  130 (349)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTT--------EEEEEETTSCSCEEEEC--S-----SCSCCCEEEEET-----TTTEE
T ss_pred             CCCceEEEEEeccccEEEEEeccCC--------ceEEEecCCCCceEEEe--C-----CCCCccEEEEec-----CCCeE
Confidence            35567889999 5889999999876        89999998876443221  1     223457889985     57899


Q ss_pred             EEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      |++|++.+.|.|++++......+-.                              ......++|+||.     .++++|+
T Consensus       131 y~~d~~~~~I~~~~~dG~~~~~l~~------------------------------~~l~~P~~iavdp-----~~g~ly~  175 (349)
T 3v64_C          131 YWTDSGTSRIEVANLDGAHRKVLLW------------------------------QSLEKPRAIALHP-----MEGTIYW  175 (349)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC------------------------------TTCSCEEEEEEET-----TTTEEEE
T ss_pred             EEEcCCCCeEEEEcCCCCceEEEEe------------------------------CCCCCcceEEEec-----CcCeEEE
Confidence            9999999999999987554332211                              1123468899994     3589999


Q ss_pred             ecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          284 ADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       284 ~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      +|.+. +.|.++++.......+...                .+.+   -+|||++|+    .+.|||.--...+++++..
T Consensus       176 td~~~~~~I~r~~~dG~~~~~~~~~----------------~~~~---PnGla~d~~----~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          176 TDWGNTPRIEASSMDGSGRRIIADT----------------HLFW---PNGLTIDYA----GRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             EECSSSCEEEEEETTSCSCEESCCS----------------SCSC---EEEEEEETT----TTEEEEEETTTTEEEEEET
T ss_pred             eccCCCCEEEEEeCCCCCcEEEEEC----------------CCCC---cceEEEeCC----CCEEEEEECCCCEEEEEeC
Confidence            99987 8898998875443222111                1122   367999986    3699997766667877764


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecc
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP  442 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~p  442 (494)
                      .    .+        ..+.+...+ .....|++++  .|.||+++...++|.+.|..+|     ++..++..   .+..|
T Consensus       233 d----G~--------~~~~~~~~~-~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G-----~~~~~i~~---~~~~p  289 (349)
T 3v64_C          233 D----GS--------HRKAVISQG-LPHPFAITVF--EDSLYWTDWHTKSINSANKFTG-----KNQEIIRN---KLHFP  289 (349)
T ss_dssp             T----SC--------SCEEEECSS-CSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-----CSCEEEEC---SCSCC
T ss_pred             C----CC--------ceEEEEeCC-CCCceEEEEE--CCEEEEecCCCCeEEEEEccCC-----CccEEecc---CCCCC
Confidence            2    11        111112111 2457899997  6899999999999999995443     24455553   35789


Q ss_pred             cceEEcC
Q psy731          443 SDIRVDR  449 (494)
Q Consensus       443 d~~~id~  449 (494)
                      .++++.+
T Consensus       290 ~gi~v~~  296 (349)
T 3v64_C          290 MDIHTLH  296 (349)
T ss_dssp             CCEEEEC
T ss_pred             ceEEEEc
Confidence            9999865

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.26  E-value=1.5e-09  Score=108.44  Aligned_cols=210  Identities=12%  Similarity=0.126  Sum_probs=138.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC---ce-eEEecCccc
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN---DS-HIIHHNYLH  232 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~---~~-~rv~~~~~~  232 (494)
                      .|.++|+.+.++...+  +      ..+....+.+|.     .++.+|++|...+.|.++|+...   +. ..+-.    
T Consensus        11 ~I~~i~~~~~~~~~~~--~------~~~~p~g~~~d~-----~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----   73 (316)
T 1ijq_A           11 EVRKMTLDRSEYTSLI--P------NLRNVVALDTEV-----ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----   73 (316)
T ss_dssp             SEEEEETTSCCCEEEE--C------SCSSEEEEEEET-----TTTEEEEEETTTTEEEEEEC--------CEEEEC----
T ss_pred             eEEEEECCCcceEehh--c------CCCceEEEEEEe-----CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----
Confidence            3666777776654422  1      123344556653     57899999999999999998762   11 11100    


Q ss_pred             cCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccC
Q psy731          233 FDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFD  312 (494)
Q Consensus       233 ~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~d  312 (494)
                                                .......+|++|.     .++.+|++|...+.|.|+|+.+.....+....+   
T Consensus        74 --------------------------~~~~~p~glavd~-----~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~---  119 (316)
T 1ijq_A           74 --------------------------RDIQAPDGLAVDW-----IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG---  119 (316)
T ss_dssp             --------------------------SSCSCCCEEEEET-----TTTEEEEEETTTTEEEEEETTSSSEEEEEECTT---
T ss_pred             --------------------------CCCCCcCEEEEee-----cCCeEEEEECCCCEEEEEeCCCCceEEEEECCC---
Confidence                                      0112346788883     257899999999999999998665433332111   


Q ss_pred             CCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-cceEeeechhhcCCCcCccccccceEEecccCCCCCC
Q psy731          313 PLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQS  391 (494)
Q Consensus       313 P~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs  391 (494)
                                      ..-.|||++|.    .+.||+.-... .+++++..    |.+        ..+.++..+ ....
T Consensus       120 ----------------~~P~~iavdp~----~g~ly~~d~~~~~~I~~~~~----dG~--------~~~~~~~~~-~~~P  166 (316)
T 1ijq_A          120 ----------------SKPRAIVVDPV----HGFMYWTDWGTPAKIKKGGL----NGV--------DIYSLVTEN-IQWP  166 (316)
T ss_dssp             ----------------CCEEEEEEETT----TTEEEEEECSSSCEEEEEET----TSC--------CEEEEECSS-CSCE
T ss_pred             ----------------CCcceEEeCCC----CCEEEEEccCCCCeEEEEcC----CCC--------CeEEEEECC-CCCc
Confidence                            12357999886    36999987654 46776643    111        122232211 2457


Q ss_pred             CeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          392 GASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       392 ~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      .|+++|+.+|.||+++...+.|.+.|.++      .+.++++.....+.+|.++.++ ++.||++.
T Consensus       167 ~gla~d~~~~~lY~~D~~~~~I~~~d~dg------~~~~~~~~~~~~~~~P~giav~-~~~ly~~d  225 (316)
T 1ijq_A          167 NGITLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTILEDEKRLAHPFSLAVF-EDKVFWTD  225 (316)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEEECTTTTSSEEEEEEE-TTEEEEEE
T ss_pred             eEEEEeccCCEEEEEECCCCeEEEEecCC------CceEEEeecCCccCCcEEEEEE-CCEEEEEE
Confidence            89999988899999999999999999987      2456776654568899999997 57899986

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.23  E-value=5.1e-09  Score=104.36  Aligned_cols=270  Identities=11%  Similarity=0.042  Sum_probs=168.4

Q ss_pred             CcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCc-eEEeeEEEcCCCeEEEEeCCCCCCC
Q psy731           73 DRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNL-TSVVKVQSDPCDRLWALDSGVVEGK  151 (494)
Q Consensus        73 gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~l-vsV~~i~iD~~~~LwvlD~G~~~~~  151 (494)
                      ..+||.=-.|...-..+|..+..+.          ++++.+=   +...+...+ ..++.+.+| .++|||...+..   
T Consensus         2 ~g~~v~neg~~g~~~~~l~~~d~~t----------~~~~~~i---~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~---   64 (328)
T 3dsm_A            2 SGLFITNEGNFQYSNATLSYYDPAT----------CEVENEV---FYRANGFKLGDVAQSMVIR-DGIGWIVVNNSH---   64 (328)
T ss_dssp             CEEEEEECCCTTSCCBEEEEEETTT----------TEEECSH---HHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGT---
T ss_pred             CeEEEEecCCCCCCCceEEEEECCC----------CEEhhhh---HhhhcCcccCccceEEEEE-CCEEEEEEcCCC---
Confidence            3567777776533467899998643          2333211   000011112 234566675 589999998765   


Q ss_pred             CCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeE-EecCc
Q psy731          152 MEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHI-IHHNY  230 (494)
Q Consensus       152 ~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~r-v~~~~  230 (494)
                           .|.++|++|+++++++.-        ......++++-      ++.+|++|...+.|.|+|.++++..+ +.-..
T Consensus        65 -----~v~viD~~t~~~~~~i~~--------~~~p~~i~~~~------~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~  125 (328)
T 3dsm_A           65 -----VIFAIDINTFKEVGRITG--------FTSPRYIHFLS------DEKAYVTQIWDYRIFIINPKTYEITGYIECPD  125 (328)
T ss_dssp             -----EEEEEETTTCCEEEEEEC--------CSSEEEEEEEE------TTEEEEEEBSCSEEEEEETTTTEEEEEEECTT
T ss_pred             -----EEEEEECcccEEEEEcCC--------CCCCcEEEEeC------CCeEEEEECCCCeEEEEECCCCeEEEEEEcCC
Confidence                 899999999999998842        12345666642      34899999888999999999988643 31000


Q ss_pred             cccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC-CCeEEEEEcCCCcEEEEecCCc
Q psy731          231 LHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYL  309 (494)
Q Consensus       231 ~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~-~~gliVydl~~~~swrv~~~~~  309 (494)
                                                ...+......|+++       +..+|+++.+ ...|.|+|.++++.-+....  
T Consensus       126 --------------------------~~~~~~~p~~i~~~-------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~--  170 (328)
T 3dsm_A          126 --------------------------MDMESGSTEQMVQY-------GKYVYVNCWSYQNRILKIDTETDKVVDELTI--  170 (328)
T ss_dssp             --------------------------CCTTTCBCCCEEEE-------TTEEEEEECTTCCEEEEEETTTTEEEEEEEC--
T ss_pred             --------------------------ccccCCCcceEEEE-------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEc--
Confidence                                      00001134456663       4789999984 78999999998864322110  


Q ss_pred             ccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC----------cceEeeechhhcCCCcCccccccce
Q psy731          310 HFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS----------TTEFAVTTKVLQNRSLDFSRSNFDF  379 (494)
Q Consensus       310 ~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss----------~~ly~V~T~~L~~~~~~~~~~~~~v  379 (494)
                                        ..+..+|+++|+   |  .+|+..+..          ..++.+.++-.+        +...+
T Consensus       171 ------------------g~~p~~i~~~~d---G--~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--------v~~~~  219 (328)
T 3dsm_A          171 ------------------GIQPTSLVMDKY---N--KMWTITDGGYEGSPYGYEAPSLYRIDAETFT--------VEKQF  219 (328)
T ss_dssp             ------------------SSCBCCCEECTT---S--EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--------EEEEE
T ss_pred             ------------------CCCccceEEcCC---C--CEEEEECCCccCCccccCCceEEEEECCCCe--------EEEEE
Confidence                              012345889875   2  588877654          477887654221        11111


Q ss_pred             EEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcC-CceEEEEe
Q psy731          380 KVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDR-TGVLWVLS  457 (494)
Q Consensus       380 ~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~-~g~Lwvls  457 (494)
                      . ++ .|  ....++++++..+.||++.-   .|.+||+.++ ...  .... ...  ....|.++.+|+ +|.|||..
T Consensus       220 ~-~~-~g--~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~-~~~--~~~~-~~~--~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          220 K-FK-LG--DWPSEVQLNGTRDTLYWINN---DIWRMPVEAD-RVP--VRPF-LEF--RDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             E-CC-TT--CCCEEEEECTTSCEEEEESS---SEEEEETTCS-SCC--SSCS-BCC--CSSCEEEEEECTTTCCEEEEE
T ss_pred             e-cC-CC--CCceeEEEecCCCEEEEEcc---EEEEEECCCC-cee--eeee-ecC--CCCceEEEEEcCCCCeEEEEc
Confidence            1 11 12  24678999966778998865   8999999874 221  1111 111  146899999997 78999996

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.23  E-value=9.9e-09  Score=102.46  Aligned_cols=226  Identities=18%  Similarity=0.231  Sum_probs=149.4

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCC---cEEEEEEcCCCccccccCCccceEEEeecCCCCCc
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQ---MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNA  201 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~---~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~  201 (494)
                      +..+.++..|. .++||+.|.+..        +|.++|+.+.   ....++ ++.     .-.....++||.     .++
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~--------~I~~~~~~g~~~~~~~~~~-~~~-----~~~~p~glavd~-----~~~   89 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQR--------MICSTQLDRAHGVSSYDTV-ISR-----DIQAPDGLAVDW-----IHS   89 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTT--------EEEEEEC--------CEEE-ECS-----SCSCCCEEEEET-----TTT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCC--------cEEEEECCCCCCCcccEEE-EeC-----CCCCcCEEEEee-----cCC
Confidence            55678899995 679999999876        8999999862   222211 222     223457888984     478


Q ss_pred             EEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731          202 FLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL  281 (494)
Q Consensus       202 ~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~  281 (494)
                      .+|++|+..+.|.|+|++......+-.                              .......+|+||.     .++++
T Consensus        90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~------------------------------~~~~~P~~iavdp-----~~g~l  134 (316)
T 1ijq_A           90 NIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------ENGSKPRAIVVDP-----VHGFM  134 (316)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEE------------------------------CTTCCEEEEEEET-----TTTEE
T ss_pred             eEEEEECCCCEEEEEeCCCCceEEEEE------------------------------CCCCCcceEEeCC-----CCCEE
Confidence            999999999999999987554433311                              1123467899984     35799


Q ss_pred             EEecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEee
Q psy731          282 YIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV  360 (494)
Q Consensus       282 YI~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V  360 (494)
                      |++|.+. +.|.++++.......+...                .+.+   -.|||++|+    .+.|||.-....+++++
T Consensus       135 y~~d~~~~~~I~~~~~dG~~~~~~~~~----------------~~~~---P~gla~d~~----~~~lY~~D~~~~~I~~~  191 (316)
T 1ijq_A          135 YWTDWGTPAKIKKGGLNGVDIYSLVTE----------------NIQW---PNGITLDLL----SGRLYWVDSKLHSISSI  191 (316)
T ss_dssp             EEEECSSSCEEEEEETTSCCEEEEECS----------------SCSC---EEEEEEETT----TTEEEEEETTTTEEEEE
T ss_pred             EEEccCCCCeEEEEcCCCCCeEEEEEC----------------CCCC---ceEEEEecc----CCEEEEEECCCCeEEEE
Confidence            9999875 7888888865443222211                1122   457999986    36999987766688877


Q ss_pred             echhhcCCCcCccccccceEEeccc-CCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeE
Q psy731          361 TTKVLQNRSLDFSRSNFDFKVMGSR-GTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATL  439 (494)
Q Consensus       361 ~T~~L~~~~~~~~~~~~~v~~~G~~-G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l  439 (494)
                      ...    .+        ..+.+.+. +......|+++|  .|.||+++...+.|.++|+.+|     +...++..   .|
T Consensus       192 d~d----g~--------~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g-----~~~~~i~~---~~  249 (316)
T 1ijq_A          192 DVN----GG--------NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG-----SDVNLLAE---NL  249 (316)
T ss_dssp             ETT----SC--------SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-----CCCEEEEC---SC
T ss_pred             ecC----CC--------ceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCC-----cceEEEec---CC
Confidence            643    11        11222221 112456899999  4899999999999999998653     23455543   25


Q ss_pred             ecccceEEcCC
Q psy731          440 IYPSDIRVDRT  450 (494)
Q Consensus       440 ~~pd~~~id~~  450 (494)
                      .-|.++++.+.
T Consensus       250 ~~p~~i~v~~~  260 (316)
T 1ijq_A          250 LSPEDMVLFHN  260 (316)
T ss_dssp             SCCCCEEEESG
T ss_pred             CCceEEEEecc
Confidence            66889988653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.20  E-value=3.3e-09  Score=103.73  Aligned_cols=238  Identities=10%  Similarity=0.054  Sum_probs=144.9

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      +.-..++.-|+ .++||+.|....        +|++||+.++++ +.+.++.        ....+++|      .++.+|
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~--------~i~~~d~~~~~~-~~~~~~~--------~~~~i~~~------~dG~l~   68 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAK--------KVCRWDSFTKQV-QRVTMDA--------PVSSVALR------QSGGYV   68 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTT--------EEEEEETTTCCE-EEEECSS--------CEEEEEEB------TTSSEE
T ss_pred             CccccCCeEECCCCEEEEEECCCC--------EEEEEECCCCcE-EEEeCCC--------ceEEEEEC------CCCCEE
Confidence            34455666665 689999999877        899999999876 4465544        34455664      234488


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      ++.  ..+|.+||.++++...+.....                          -.+...++++++|.      ++.+|++
T Consensus        69 v~~--~~~l~~~d~~~g~~~~~~~~~~--------------------------~~~~~~~~di~~d~------dG~l~~~  114 (297)
T 3g4e_A           69 ATI--GTKFCALNWKEQSAVVLATVDN--------------------------DKKNNRFNDGKVDP------AGRYFAG  114 (297)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEEECCT--------------------------TCSSEEEEEEEECT------TSCEEEE
T ss_pred             EEE--CCeEEEEECCCCcEEEEEecCC--------------------------CCCCCCCCCEEECC------CCCEEEe
Confidence            886  5789999999998876632110                          11234567788874      3447887


Q ss_pred             cCCC-----------CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC
Q psy731          285 DSGH-----------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA  353 (494)
Q Consensus       285 D~~~-----------~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls  353 (494)
                      +...           .+|..+|.. ++.-++.               .  .   ....+||++||+    ++.||+.-..
T Consensus       115 ~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~---------------~--~---~~~pngi~~spd----g~~lyv~~~~  169 (297)
T 3g4e_A          115 TMAEETAPAVLERHQGALYSLFPD-HHVKKYF---------------D--Q---VDISNGLDWSLD----HKIFYYIDSL  169 (297)
T ss_dssp             EEECCSBTTBCCTTCEEEEEECTT-SCEEEEE---------------E--E---ESBEEEEEECTT----SCEEEEEEGG
T ss_pred             cCCcccccccccCCCcEEEEEECC-CCEEEEe---------------e--c---cccccceEEcCC----CCEEEEecCC
Confidence            7432           234444332 1111110               0  1   123578999997    3789997655


Q ss_pred             CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeee
Q psy731          354 STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVA  433 (494)
Q Consensus       354 s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~  433 (494)
                      ..+++..... ..+..+..   .+.+..+...  ....+|+++| ++|+||++....+.|.+||+++| .+    ...+.
T Consensus       170 ~~~i~~~~~d-~~~G~~~~---~~~~~~~~~~--~~~p~g~~~d-~~G~lwva~~~~~~v~~~d~~tG-~~----~~~i~  237 (297)
T 3g4e_A          170 SYSVDAFDYD-LQTGQISN---RRSVYKLEKE--EQIPDGMCID-AEGKLWVACYNGGRVIRLDPVTG-KR----LQTVK  237 (297)
T ss_dssp             GTEEEEEEEC-TTTCCEEE---EEEEEECCGG--GCEEEEEEEB-TTSCEEEEEETTTEEEEECTTTC-CE----EEEEE
T ss_pred             CCcEEEEecc-CCCCcccC---cEEEEECCCC--CCCCCeeEEC-CCCCEEEEEcCCCEEEEEcCCCc-eE----EEEEE
Confidence            5566665431 01111111   0112222221  1346899999 88999999999999999999854 22    23332


Q ss_pred             ecCCeEecccceEEc-CCc-eEEEEecCc
Q psy731          434 EDNATLIYPSDIRVD-RTG-VLWVLSNKL  460 (494)
Q Consensus       434 ~d~~~l~~pd~~~id-~~g-~Lwvlsnrl  460 (494)
                      . +.  ..|..+.++ +++ .|||++++-
T Consensus       238 ~-p~--~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          238 L-PV--DKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             C-SS--SBEEEEEEESGGGCEEEEEEBCT
T ss_pred             C-CC--CCceEEEEeCCCCCEEEEEcCCc
Confidence            2 11  367888886 444 799999763

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.19  E-value=5.3e-09  Score=106.25  Aligned_cols=179  Identities=16%  Similarity=0.140  Sum_probs=125.8

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      .++.+|++|...+.|.++++..+....+-.                              .......+|+||-     .+
T Consensus        83 ~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~------------------------------~~~~~p~glavd~-----~~  127 (349)
T 3v64_C           83 RRELVFWSDVTLDRILRANLNGSNVEEVVS------------------------------TGLESPGGLAVDW-----VH  127 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSCCCEEEEET-----TT
T ss_pred             cccEEEEEeccCCceEEEecCCCCceEEEe------------------------------CCCCCccEEEEec-----CC
Confidence            678999999999999999988776544411                              0112356788984     35


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-cce
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-TTE  357 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-~~l  357 (494)
                      +.+|++|.....|.++++.+.....+....+                   ..-.|||++|.    .+.|||.-... .++
T Consensus       128 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l-------------------~~P~~iavdp~----~g~ly~td~~~~~~I  184 (349)
T 3v64_C          128 DKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-------------------EKPRAIALHPM----EGTIYWTDWGNTPRI  184 (349)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECTTC-------------------SCEEEEEEETT----TTEEEEEECSSSCEE
T ss_pred             CeEEEEcCCCCeEEEEcCCCCceEEEEeCCC-------------------CCcceEEEecC----cCeEEEeccCCCCEE
Confidence            7899999999999999988654332222111                   11367999986    36999976655 677


Q ss_pred             EeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCC
Q psy731          358 FAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNA  437 (494)
Q Consensus       358 y~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~  437 (494)
                      +++...    .+        ..+.+...+ .....|+++|+.+|.||+++...+.|.+++.++      .+..+++..  
T Consensus       185 ~r~~~d----G~--------~~~~~~~~~-~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG------~~~~~~~~~--  243 (349)
T 3v64_C          185 EASSMD----GS--------GRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG------SHRKAVISQ--  243 (349)
T ss_dssp             EEEETT----SC--------SCEESCCSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEECS--
T ss_pred             EEEeCC----CC--------CcEEEEECC-CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC------CceEEEEeC--
Confidence            777542    11        112222222 245689999988999999999999999999987      234455543  


Q ss_pred             eEecccceEEcCCceEEEEe
Q psy731          438 TLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       438 ~l~~pd~~~id~~g~Lwvls  457 (494)
                      .+.+|+|+.++ ++.||++.
T Consensus       244 ~~~~P~giav~-~~~ly~td  262 (349)
T 3v64_C          244 GLPHPFAITVF-EDSLYWTD  262 (349)
T ss_dssp             SCSSEEEEEEE-TTEEEEEE
T ss_pred             CCCCceEEEEE-CCEEEEec
Confidence            37899999995 67899985

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.17  E-value=3.4e-08  Score=94.71  Aligned_cols=225  Identities=11%  Similarity=0.067  Sum_probs=149.1

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      ...+.++.+|. .++||+.|.+..        +|.++|+.+..+...+  +.     .-.....+++|.     .++++|
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~--------~I~~~~~~g~~~~~~~--~~-----~~~~p~~ia~d~-----~~~~ly   94 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEP--------SIGRASLHGGEPTTII--RQ-----DLGSPEGIALDH-----LGRTIF   94 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTT--------EEEEEESSSCCCEEEE--CT-----TCCCEEEEEEET-----TTTEEE
T ss_pred             CCcEEEEEEecCCCEEEEEECCCC--------EEEEEecCCCCcEEEE--EC-----CCCCccEEEEEe-----cCCeEE
Confidence            35678999997 679999999876        8999999877643322  22     234567888874     468999


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      ++|...+.|.++|+.......+-.                              ......++|++|.     +++++|++
T Consensus        95 v~d~~~~~I~~~~~~g~~~~~~~~------------------------------~~~~~P~~i~vd~-----~~g~lyv~  139 (267)
T 1npe_A           95 WTDSQLDRIEVAKMDGTQRRVLFD------------------------------TGLVNPRGIVTDP-----VRGNLYWT  139 (267)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSSEEEEEEET-----TTTEEEEE
T ss_pred             EEECCCCEEEEEEcCCCCEEEEEE------------------------------CCCCCccEEEEee-----CCCEEEEE
Confidence            999999999999987543322210                              0113467888884     35899999


Q ss_pred             cCC--CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          285 DSG--HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       285 D~~--~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      |..  .+.|.++++.....-.+...                .+   ..-.|||++|+    ++.||+.-..+.+++++..
T Consensus       140 ~~~~~~~~I~~~~~dg~~~~~~~~~----------------~~---~~P~gia~d~~----~~~lyv~d~~~~~I~~~~~  196 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTNRRILAQD----------------NL---GLPNGLTFDAF----SSQLCWVDAGTHRAECLNP  196 (267)
T ss_dssp             ECCSSSCEEEEEETTSCCCEEEECT----------------TC---SCEEEEEEETT----TTEEEEEETTTTEEEEEET
T ss_pred             ECCCCCcEEEEEecCCCCcEEEEEC----------------CC---CCCcEEEEcCC----CCEEEEEECCCCEEEEEec
Confidence            987  46788888764332111111                01   12467999986    3699998887778888765


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecc
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP  442 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~p  442 (494)
                      +-.            ..+.+.+.+  ....|+++|  .|.||+++...+.|.++|+++|.     -...+...  ...-|
T Consensus       197 ~g~------------~~~~~~~~~--~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~-----~~~~i~~g--~~~~p  253 (267)
T 1npe_A          197 AQP------------GRRKVLEGL--QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK-----EMDTFHPH--KQTRL  253 (267)
T ss_dssp             TEE------------EEEEEEECC--CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE-----EEEEECCS--SCCCC
T ss_pred             CCC------------ceEEEecCC--CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCC-----ceEEEccc--ccccc
Confidence            311            011111211  234689998  58999999999999999998642     12333221  22348


Q ss_pred             cceEEcCCc
Q psy731          443 SDIRVDRTG  451 (494)
Q Consensus       443 d~~~id~~g  451 (494)
                      .++.+.+++
T Consensus       254 ~gi~~~~~~  262 (267)
T 1npe_A          254 YGITIALSQ  262 (267)
T ss_dssp             CCEEEECSC
T ss_pred             ceeeecCcc
Confidence            888887665

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.17  E-value=2.9e-09  Score=114.31  Aligned_cols=268  Identities=10%  Similarity=0.093  Sum_probs=162.3

Q ss_pred             CCCceEEeeEEEcC--CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEE-------Ee
Q psy731          123 ARNLTSVVKVQSDP--CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVV-------DV  193 (494)
Q Consensus       123 ~~~lvsV~~i~iD~--~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vV-------D~  193 (494)
                      |.+|....+|.+|+  .++|||.+-+.-        .|.++|++++++......+.    ..-..+.++.+       |.
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~--------~i~~ID~~~~~v~~l~~~~~----~~~~~p~~ia~~~~~~~~d~  202 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHK--------AIQLIDLKNRMLSSPLNINT----IPTNRIRSIAFNKKIEGYAD  202 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEE--------EEEEEETTTTEEEEEECCTT----SSCSBEEEEEECCCBTTTBC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCC--------eEEEEECCCCEEEEEEccCc----cccCCCcEEEEeecccccCC
Confidence            77788999999995  589999997654        69999999999987554332    12234666777       53


Q ss_pred             ecCCCCCcEEEEeeCCC------CeEEEEEccCCceeE--EecCccccCCCCCccccCCccceeeeecccccccccccce
Q psy731          194 TSANCDNAFLYIADSGH------NHIVVYNYRTNDSHI--IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFS  265 (494)
Q Consensus       194 ~~~~c~~~~vYItDs~~------~~iIVyd~~~~~~~r--v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~  265 (494)
                           +..++||+|...      .++++++.+.+..|.  -+.                           ..+.......
T Consensus       203 -----~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~---------------------------~~v~~~~~p~  250 (496)
T 3kya_A          203 -----EAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDI---------------------------QLIAAYKQCN  250 (496)
T ss_dssp             -----TTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCE---------------------------EEEEEESCCC
T ss_pred             -----CCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccc---------------------------eeeccCCCce
Confidence                 455899999986      358888754422221  000                           0001112345


Q ss_pred             eeEEeeecCCCCCcEEEEecCCCCeEEEEEcC-------CCcEEEEecCCcccCCCCcc-eEEcCEEeeeecceeeeeec
Q psy731          266 NMVVDVTSANCDDAFLYIADSGHNHIVVYNYR-------TNDSHIIHHNYLHFDPLFGD-FTIGGVNFQWQTGIHGMSLS  337 (494)
Q Consensus       266 ~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~-------~~~swrv~~~~~~~dP~~~~-~~v~G~~f~~~~Gi~gIaLs  337 (494)
                      .+++|.     +++++|++|.....|.+||++       ++..|.-.+.... . .... +.+.+     ...-.+||++
T Consensus       251 giavdp-----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~-g-~~~~l~~~~~-----~~~p~~ia~~  318 (496)
T 3kya_A          251 GATIHP-----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP-N-TFKQLFTIAD-----PSWEFQIFIH  318 (496)
T ss_dssp             CEEECT-----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT-T-TEEEEEECSS-----SSCCEEEEEC
T ss_pred             EEEEcC-----CCCeEEEEECCCCEEEEEecccccccccCceeecccccccc-c-ccceeEecCC-----CCCceEEEEc
Confidence            667764     368999999999899999998       6665432221100 0 0000 11110     0113579999


Q ss_pred             cCCCCCceeEEEeeCCCcceEeeechh----hcCCCc-CccccccceEE-ecccCCCCCCC-eEEeeC------CCCeEE
Q psy731          338 PLTRDNFRVMYFHPLASTTEFAVTTKV----LQNRSL-DFSRSNFDFKV-MGSRGTGSQSG-ASSLDE------ETGVIF  404 (494)
Q Consensus       338 p~~~~g~r~LYf~plss~~ly~V~T~~----L~~~~~-~~~~~~~~v~~-~G~~G~~~qs~-g~~~D~------~~G~ly  404 (494)
                      |++    +.||+.--...+++++...-    |.+... ....-..-+.. .+......+.. |+++|.      ..|+||
T Consensus       319 p~G----~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~ly  394 (496)
T 3kya_A          319 PTG----KYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFY  394 (496)
T ss_dssp             TTS----SEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEE
T ss_pred             CCC----CEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEE
Confidence            873    68999887777888875321    111110 00000000000 00011112233 778872      479999


Q ss_pred             EeccCCCeEEEEeCCCCccccccceeeeeec---------------------CCeEecccceEEcCC-ceEEEEe
Q psy731          405 YALLVKSGVGCWNTFRGEEYNEKSMGLVAED---------------------NATLIYPSDIRVDRT-GVLWVLS  457 (494)
Q Consensus       405 ~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d---------------------~~~l~~pd~~~id~~-g~Lwvls  457 (494)
                      +++...+.|.++++++  .     +.+++-.                     ..+|.+|.++.+|++ |.|||.-
T Consensus       395 VaD~~N~rIr~i~~~G--~-----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD  462 (496)
T 3kya_A          395 FVDRLNFCVRKVTPEG--I-----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHD  462 (496)
T ss_dssp             EEEGGGTEEEEECTTC--B-----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEE
T ss_pred             EEECCCCEEEEEeCCC--C-----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEe
Confidence            9999999999999877  3     3344311                     136899999999996 9999984

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.17  E-value=8e-09  Score=101.23  Aligned_cols=232  Identities=13%  Similarity=0.113  Sum_probs=146.1

Q ss_pred             CCceEEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          124 RNLTSVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      .++....++..|++++ |++.|....        +|.+||. ++++ +.+..+.       ...+.+.+|      .++.
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~--------~i~~~~~-~g~~-~~~~~~~-------~~~~gl~~d------~dG~   98 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGR--------RVLGWRE-DGTV-DVLLDAT-------AFTNGNAVD------AQQR   98 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTT--------EEEEEET-TSCE-EEEEESC-------SCEEEEEEC------TTSC
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCC--------EEEEEeC-CCCE-EEEeCCC-------CccceeeEC------CCCC
Confidence            3455667888888776 888998776        7999998 5553 4444333       345677776      3566


Q ss_pred             EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      +|+++.+.++|.+||.+ |+...+....-                          -......+++++|.      ++-+|
T Consensus        99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~------dG~l~  145 (305)
T 3dr2_A           99 LVHCEHGRRAITRSDAD-GQAHLLVGRYA--------------------------GKRLNSPNDLIVAR------DGAIW  145 (305)
T ss_dssp             EEEEETTTTEEEEECTT-SCEEEEECEET--------------------------TEECSCCCCEEECT------TSCEE
T ss_pred             EEEEECCCCEEEEECCC-CCEEEEEeccC--------------------------CCccCCCCCEEECC------CCCEE
Confidence            99999999999999986 77655521100                          01112356788873      45689


Q ss_pred             EecCC-----------------CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCce
Q psy731          283 IADSG-----------------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFR  345 (494)
Q Consensus       283 I~D~~-----------------~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r  345 (494)
                      ++|..                 ..+|.+||.++++.-++. .                    ....+||++||+    ++
T Consensus       146 ~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--------------------~~~p~gl~~spd----g~  200 (305)
T 3dr2_A          146 FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--------------------LDHPNGLAFSPD----EQ  200 (305)
T ss_dssp             EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--------------------ESSEEEEEECTT----SS
T ss_pred             EeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--------------------CCCCcceEEcCC----CC
Confidence            98852                 256778877666543332 1                    123567999997    37


Q ss_pred             eEEEeeCCC-----cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          346 VMYFHPLAS-----TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       346 ~LYf~plss-----~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      +||+.-...     .+++....+-   ..+..      .+.+.+.+ ....+|+++| .+|+||++.  .++|.+|++++
T Consensus       201 ~lyv~~~~~~~~~~~~i~~~~~~~---~~l~~------~~~~~~~~-~~~pdgi~~d-~~G~lwv~~--~~gv~~~~~~g  267 (305)
T 3dr2_A          201 TLYVSQTPEQGHGSVEITAFAWRD---GALHD------RRHFASVP-DGLPDGFCVD-RGGWLWSSS--GTGVCVFDSDG  267 (305)
T ss_dssp             EEEEEECCC---CCCEEEEEEEET---TEEEE------EEEEECCS-SSCCCSEEEC-TTSCEEECC--SSEEEEECTTS
T ss_pred             EEEEEecCCcCCCCCEEEEEEecC---CCccC------CeEEEECC-CCCCCeEEEC-CCCCEEEec--CCcEEEECCCC
Confidence            899965442     3555543221   00111      11111111 2346899999 899999998  56899999987


Q ss_pred             CccccccceeeeeecCCeEecccceEEcCCc-eEEEEecC
Q psy731          421 GEEYNEKSMGLVAEDNATLIYPSDIRVDRTG-VLWVLSNK  459 (494)
Q Consensus       421 ~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g-~Lwvlsnr  459 (494)
                        .    .+..+... +   .|..+.+++++ .|||.+++
T Consensus       268 --~----~~~~~~~~-~---~~~~~~f~~d~~~L~it~~~  297 (305)
T 3dr2_A          268 --Q----LLGHIPTP-G---TASNCTFDQAQQRLFITGGP  297 (305)
T ss_dssp             --C----EEEEEECS-S---CCCEEEECTTSCEEEEEETT
T ss_pred             --C----EEEEEECC-C---ceeEEEEeCCCCEEEEEcCC
Confidence              2    23344332 2   47888887665 79999864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.17  E-value=8.6e-09  Score=98.90  Aligned_cols=188  Identities=12%  Similarity=0.155  Sum_probs=126.9

Q ss_pred             CCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccccccccc
Q psy731          184 SKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESK  263 (494)
Q Consensus       184 S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~  263 (494)
                      .....+++|.     .++++|++|.+.+.|.++|+..+....+-.                              .....
T Consensus        36 ~~~~gi~~d~-----~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~------------------------------~~~~~   80 (267)
T 1npe_A           36 KVIIGLAFDC-----VDKVVYWTDISEPSIGRASLHGGEPTTIIR------------------------------QDLGS   80 (267)
T ss_dssp             EEEEEEEEET-----TTTEEEEEETTTTEEEEEESSSCCCEEEEC------------------------------TTCCC
T ss_pred             CcEEEEEEec-----CCCEEEEEECCCCEEEEEecCCCCcEEEEE------------------------------CCCCC
Confidence            3455677763     578999999999999999998765433310                              01124


Q ss_pred             ceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCC
Q psy731          264 FSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDN  343 (494)
Q Consensus       264 ~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g  343 (494)
                      ...|++|.     +++.+|++|...+.|.++++.+...-.+....                +   ..-.||+++|+    
T Consensus        81 p~~ia~d~-----~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~----------------~---~~P~~i~vd~~----  132 (267)
T 1npe_A           81 PEGIALDH-----LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG----------------L---VNPRGIVTDPV----  132 (267)
T ss_dssp             EEEEEEET-----TTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------------C---SSEEEEEEETT----
T ss_pred             ccEEEEEe-----cCCeEEEEECCCCEEEEEEcCCCCEEEEEECC----------------C---CCccEEEEeeC----
Confidence            57788884     35789999999999999998754322221110                0   12467999986    


Q ss_pred             ceeEEEeeCC--CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          344 FRVMYFHPLA--STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       344 ~r~LYf~pls--s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ++.||+.-..  +.+++++..    |..        ..+.+...+ .....|+++|+..+.||+++...+.|.++++++ 
T Consensus       133 ~g~lyv~~~~~~~~~I~~~~~----dg~--------~~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-  198 (267)
T 1npe_A          133 RGNLYWTDWNRDNPKIETSHM----DGT--------NRRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-  198 (267)
T ss_dssp             TTEEEEEECCSSSCEEEEEET----TSC--------CCEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-
T ss_pred             CCEEEEEECCCCCcEEEEEec----CCC--------CcEEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-
Confidence            3699997755  346665542    111        112222211 245789999966789999999999999999987 


Q ss_pred             ccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          422 EEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       422 ~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                       .    +...+..   .+.+|.++.+| +++|||..
T Consensus       199 -~----~~~~~~~---~~~~P~gi~~d-~~~lyva~  225 (267)
T 1npe_A          199 -P----GRRKVLE---GLQYPFAVTSY-GKNLYYTD  225 (267)
T ss_dssp             -E----EEEEEEE---CCCSEEEEEEE-TTEEEEEE
T ss_pred             -C----ceEEEec---CCCCceEEEEe-CCEEEEEE
Confidence             2    2233332   36789999998 68999985

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.16  E-value=3.8e-09  Score=108.75  Aligned_cols=188  Identities=15%  Similarity=0.125  Sum_probs=129.3

Q ss_pred             CccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccc
Q psy731          185 KFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKF  264 (494)
Q Consensus       185 ~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~  264 (494)
                      ....+.+|.     .++.+|++|...+.|.++++..+....+-.                              ......
T Consensus       117 ~~~gl~~d~-----~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~------------------------------~~~~~p  161 (386)
T 3v65_B          117 NAIALDFHH-----RRELVFWSDVTLDRILRANLNGSNVEEVVS------------------------------TGLESP  161 (386)
T ss_dssp             CEEEEEEET-----TTTEEEEEETTTTEEEEEETTSCCEEEEEC------------------------------SSCSCC
T ss_pred             ccEEEEEec-----CCCeEEEEeCCCCcEEEEecCCCCcEEEEe------------------------------CCCCCc
Confidence            344555653     578999999999999999988776544411                              111234


Q ss_pred             eeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCc
Q psy731          265 SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNF  344 (494)
Q Consensus       265 ~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~  344 (494)
                      .+|+||.     .++.+|++|.....|.++++.+...-.+....+                   ..-.|||++|.    .
T Consensus       162 ~glavd~-----~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-------------------~~P~giavdp~----~  213 (386)
T 3v65_B          162 GGLAVDW-----VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL-------------------EKPRAIALHPM----E  213 (386)
T ss_dssp             CCEEEET-----TTTEEEEEETTTTEEEECBTTSCSCEEEECSSC-------------------SCEEEEEEETT----T
T ss_pred             cEEEEEe-----CCCeEEEEcCCCCeEEEEeCCCCceEEeecCCC-------------------CCCcEEEEEcC----C
Confidence            6788984     357899999999999999887554322222111                   12367999986    3


Q ss_pred             eeEEEeeCCC-cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCcc
Q psy731          345 RVMYFHPLAS-TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEE  423 (494)
Q Consensus       345 r~LYf~plss-~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~  423 (494)
                      +.|||.-... .+++++...    .+        ..+.+...+ .....|+++|+..|.||+++...+.|.+++.++   
T Consensus       214 g~ly~td~~~~~~I~r~~~d----G~--------~~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG---  277 (386)
T 3v65_B          214 GTIYWTDWGNTPRIEASSMD----GS--------GRRIIADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG---  277 (386)
T ss_dssp             TEEEEEECSSSCEEEEEETT----SC--------SCEEEECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS---
T ss_pred             CeEEEeccCCCCEEEEEeCC----CC--------CcEEEEECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC---
Confidence            6999976655 577777532    11        122233222 245689999988999999999999999999987   


Q ss_pred             ccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          424 YNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       424 ~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                         .+..+++..  .+.+|+|+.++ ++.||++.
T Consensus       278 ---~~~~~~~~~--~~~~P~giav~-~~~ly~td  305 (386)
T 3v65_B          278 ---SHRKAVISQ--GLPHPFAITVF-EDSLYWTD  305 (386)
T ss_dssp             ---CSCEEEECS--SCSSEEEEEEE-TTEEEEEE
T ss_pred             ---CeeEEEEEC--CCCCceEEEEE-CCEEEEee
Confidence               233455543  37899999995 56899885

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.14  E-value=4.9e-08  Score=93.42  Aligned_cols=248  Identities=11%  Similarity=0.116  Sum_probs=155.4

Q ss_pred             CCeeeeeeee-CCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEE-cCCCe
Q psy731           62 NCLPVSLDKW-HDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQS-DPCDR  139 (494)
Q Consensus        62 ~~~p~gv~v~-~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~i-D~~~~  139 (494)
                      -.-|.++++. +|++|++--.     ..+|..+..+ +         ..+..++....   ....+..+..+.+ +..++
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~-----~~~i~~~d~~-g---------~~~~~~~~~~~---~~~~~~~p~~i~~~~~~g~   90 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTN-----NHRIQIFDKE-G---------RFKFQFGECGK---RDSQLLYPNRVAVVRNSGD   90 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGG-----GTEEEEECTT-S---------CEEEEECCBSS---STTCBSSEEEEEEETTTTE
T ss_pred             cCCCceEEECCCCCEEEEECC-----CCEEEEECCC-C---------cEEEEecccCC---CcccccCceEEEEEcCCCe
Confidence            3568999984 7899998422     1245555432 1         12333332110   1234566788888 58999


Q ss_pred             EEEEeCC-CCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEc
Q psy731          140 LWALDSG-VVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNY  218 (494)
Q Consensus       140 LwvlD~G-~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~  218 (494)
                      |||.|.+ ..        .|.+|| .++++++++..+.      .....++++|      .++.+||+|...+.|.+||.
T Consensus        91 l~v~~~~~~~--------~i~~~d-~~g~~~~~~~~~~------~~~~~~i~~~------~~g~l~v~~~~~~~i~~~~~  149 (286)
T 1q7f_A           91 IIVTERSPTH--------QIQIYN-QYGQFVRKFGATI------LQHPRGVTVD------NKGRIIVVECKVMRVIIFDQ  149 (286)
T ss_dssp             EEEEECGGGC--------EEEEEC-TTSCEEEEECTTT------CSCEEEEEEC------TTSCEEEEETTTTEEEEECT
T ss_pred             EEEEcCCCCC--------EEEEEC-CCCcEEEEecCcc------CCCceEEEEe------CCCCEEEEECCCCEEEEEcC
Confidence            9999975 33        799999 6788877764332      3455677776      34569999999999999997


Q ss_pred             cCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCC
Q psy731          219 RTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRT  298 (494)
Q Consensus       219 ~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~  298 (494)
                      .....+.+...                             ........|++|.      ++.+|++|.....|.+||..+
T Consensus       150 ~g~~~~~~~~~-----------------------------~~~~~p~~i~~~~------~g~l~v~~~~~~~i~~~~~~g  194 (286)
T 1q7f_A          150 NGNVLHKFGCS-----------------------------KHLEFPNGVVVND------KQEIFISDNRAHCVKVFNYEG  194 (286)
T ss_dssp             TSCEEEEEECT-----------------------------TTCSSEEEEEECS------SSEEEEEEGGGTEEEEEETTC
T ss_pred             CCCEEEEeCCC-----------------------------CccCCcEEEEECC------CCCEEEEECCCCEEEEEcCCC
Confidence            65444444210                             1112356778874      356999999999999999876


Q ss_pred             CcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCcccccc
Q psy731          299 NDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNF  377 (494)
Q Consensus       299 ~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~  377 (494)
                      ...+.+.....                  .....+|+++++   |  .||+...... .+.....    +..        
T Consensus       195 ~~~~~~~~~g~------------------~~~p~~i~~d~~---G--~l~v~~~~~~~~i~~~~~----~g~--------  239 (286)
T 1q7f_A          195 QYLRQIGGEGI------------------TNYPIGVGINSN---G--EILIADNHNNFNLTIFTQ----DGQ--------  239 (286)
T ss_dssp             CEEEEESCTTT------------------SCSEEEEEECTT---C--CEEEEECSSSCEEEEECT----TSC--------
T ss_pred             CEEEEEccCCc------------------cCCCcEEEECCC---C--CEEEEeCCCCEEEEEECC----CCC--------
Confidence            65554432110                  022567999875   3  6888765543 4544431    111        


Q ss_pred             ceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          378 DFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       378 ~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      .++.+...+......++++| .+|.||++. ..+.|..|+...
T Consensus       240 ~~~~~~~~~~~~~~~~i~~~-~~g~l~vs~-~~~~v~v~~~~~  280 (286)
T 1q7f_A          240 LISALESKVKHAQCFDVALM-DDGSVVLAS-KDYRLYIYRYVQ  280 (286)
T ss_dssp             EEEEEEESSCCSCEEEEEEE-TTTEEEEEE-TTTEEEEEECSC
T ss_pred             EEEEEcccCCCCcceeEEEC-CCCcEEEEC-CCCeEEEEEccc
Confidence            12222222112234589999 799999997 478999998764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.13  E-value=5.3e-08  Score=98.01  Aligned_cols=226  Identities=15%  Similarity=0.185  Sum_probs=151.6

Q ss_pred             CceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          125 NLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       125 ~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ++.++.++..|. .++||+.|....        +|.++++.+......+ +.     ..-.....++||.     .++.+
T Consensus        33 ~~~~~~~ld~d~~~~~lyw~D~~~~--------~I~r~~~~g~~~~~~~-~~-----~~l~~p~glavd~-----~~g~l   93 (318)
T 3sov_A           33 GLEDAAAVDFVFSHGLIYWSDVSEE--------AIKRTEFNKTESVQNV-VV-----SGLLSPDGLACDW-----LGEKL   93 (318)
T ss_dssp             EEEEEEEEEEEGGGTEEEEEETTTT--------EEEEEETTSSSCCCEE-EE-----ECCSCCCEEEEET-----TTTEE
T ss_pred             CCCccEEEEEEeCCCEEEEEECCCC--------cEEEEEccCCCceEEE-Ec-----CCCCCccEEEEEc-----CCCeE
Confidence            467788888885 689999999887        8999999876321111 01     1223456788984     57899


Q ss_pred             EEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      |++|+..+.|.|+|++......+-.                              ......++|+||..     ++++|+
T Consensus        94 y~~d~~~~~I~~~~~dG~~~~~l~~------------------------------~~~~~P~giavdp~-----~g~ly~  138 (318)
T 3sov_A           94 YWTDSETNRIEVSNLDGSLRKVLFW------------------------------QELDQPRAIALDPS-----SGFMYW  138 (318)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSSEEEEEEEGG-----GTEEEE
T ss_pred             EEEECCCCEEEEEECCCCcEEEEEe------------------------------CCCCCccEEEEeCC-----CCEEEE
Confidence            9999999999999987544333311                              11234678999953     579999


Q ss_pred             ecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          284 ADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       284 ~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      +|.+ .+.|.++++.......+...                .+.+   -+|||++|+    .+.|||.--...+++++..
T Consensus       139 td~~~~~~I~r~~~dG~~~~~~~~~----------------~l~~---Pnglavd~~----~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          139 TDWGEVPKIERAGMDGSSRFIIINS----------------EIYW---PNGLTLDYE----EQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEECS----------------SCSC---EEEEEEETT----TTEEEEEETTTTEEEEEET
T ss_pred             EecCCCCEEEEEEcCCCCeEEEEEC----------------CCCC---ccEEEEecc----CCEEEEEECCCCEEEEEcC
Confidence            9976 57888888875443332211                1122   367999986    3699997766667877754


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecc
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP  442 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~p  442 (494)
                      .    .+        ..+.+.+ +......|+++|  .+.||.++...++|.++|+.+|     +...+|..   .+..|
T Consensus       196 d----G~--------~~~~~~~-~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G-----~~~~~i~~---~~~~P  252 (318)
T 3sov_A          196 D----GT--------NRQAVVK-GSLPHPFALTLF--EDILYWTDWSTHSILACNKYTG-----EGLREIHS---DIFSP  252 (318)
T ss_dssp             T----SC--------SCEEEEC-SCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTC-----CSCEEEEC---CCSSC
T ss_pred             C----CC--------ceEEEec-CCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCC-----CceEEEeC---CCCCC
Confidence            2    11        1122222 123567899999  5789999999999999999654     23445543   24678


Q ss_pred             cceEEcCC
Q psy731          443 SDIRVDRT  450 (494)
Q Consensus       443 d~~~id~~  450 (494)
                      .++++.+.
T Consensus       253 ~~i~v~~~  260 (318)
T 3sov_A          253 MDIHAFSQ  260 (318)
T ss_dssp             CCEEEECG
T ss_pred             cEEEEecc
Confidence            89988543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.13  E-value=1.6e-08  Score=114.26  Aligned_cols=227  Identities=18%  Similarity=0.218  Sum_probs=148.4

Q ss_pred             CceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcE--EEEEEcCCCccccccCCccceEEEeecCCCCCc
Q psy731          125 NLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQ--IRFFQLKEKTDYTEESKFSNMVVDVTSANCDNA  201 (494)
Q Consensus       125 ~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~v--i~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~  201 (494)
                      .+.++.++.+|. .++||+.|.+..        +|.++++.....  .....+..     .-.....|+||.     ...
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~--------~I~~~~l~g~~~~~~~~~vi~~-----~l~~P~GLAvD~-----~~~  483 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQR--------MICSTQLDRAHGVSSYDTVISR-----DIQAPDGLAVDW-----IHS  483 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTT--------EEEEEEC--------CEEEECS-----SCSCCCEEEEET-----TTT
T ss_pred             CCCceEEEeecccCCeeEEeeccce--------eEEEEeccCCCCCcceeEEEec-----CCCCcceeeeee-----cCC
Confidence            456678888886 789999999876        788888875321  11111121     334557899985     467


Q ss_pred             EEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731          202 FLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL  281 (494)
Q Consensus       202 ~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~  281 (494)
                      .+|+||++.+.|.|+|+.......+-.                              .......+|+||.     ..+++
T Consensus       484 ~LY~tD~~~~~I~v~~ldG~~~~~l~~------------------------------~~l~~P~gIaVDp-----~~g~L  528 (791)
T 3m0c_C          484 NIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------ENGSKPRAIVVDP-----VHGFM  528 (791)
T ss_dssp             EEEEEETTTTEEEEEETTSSSEEEEEE------------------------------CTTCCEEEEEEET-----TTTEE
T ss_pred             cEEEEecCCCeEEEEeCCCCeEEEEEe------------------------------CCCCCcceEEEec-----CCCCE
Confidence            999999999999999997554333311                              1123467899995     35899


Q ss_pred             EEecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEee
Q psy731          282 YIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV  360 (494)
Q Consensus       282 YI~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V  360 (494)
                      |++|.+. +.|.+.++.......+....                +.+   -.||||++.    .+.|||.-....+++++
T Consensus       529 YwtD~g~~~~I~~~~~dG~~~~~lv~~~----------------l~~---P~GLavD~~----~~~LYwaD~~~~~I~~~  585 (791)
T 3m0c_C          529 YWTDWGTPAKIKKGGLNGVDIYSLVTEN----------------IQW---PNGITLDLL----SGRLYWVDSKLHSISSI  585 (791)
T ss_dssp             EEEECSSSCEEEEEETTSCCEEEEECSS----------------CSC---EEEEEEETT----TTEEEEEETTTTEEEEE
T ss_pred             EEecCCCCCeEEEEecCCCceEEEEeCC----------------CCC---ceEEEEecC----CCeEEEEeCCCCcEEEE
Confidence            9999876 77889988766544443321                112   356999876    36999977655566666


Q ss_pred             echhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeE
Q psy731          361 TTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATL  439 (494)
Q Consensus       361 ~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l  439 (494)
                      ..    +..        ..+.+.. .+..+..-|++++  .+.||+++...++|.+.|..+|     ++..+|..   .+
T Consensus       586 d~----dG~--------~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG-----~~~~~l~~---~l  643 (791)
T 3m0c_C          586 DV----NGG--------NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG-----SDVNLLAE---NL  643 (791)
T ss_dssp             ET----TSC--------SCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-----CCCEEEEC---SC
T ss_pred             ec----CCC--------ceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCC-----cceEEeec---CC
Confidence            53    211        1122222 1223445677776  6799999999999999997654     24455543   36


Q ss_pred             ecccceEEcC
Q psy731          440 IYPSDIRVDR  449 (494)
Q Consensus       440 ~~pd~~~id~  449 (494)
                      ..|.+|.+.+
T Consensus       644 ~~P~~i~v~h  653 (791)
T 3m0c_C          644 LSPEDMVLFH  653 (791)
T ss_dssp             SCCCCEEEES
T ss_pred             CCceeEeeec
Confidence            7788998854

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.12  E-value=1.6e-07  Score=91.18  Aligned_cols=302  Identities=10%  Similarity=0.076  Sum_probs=180.5

Q ss_pred             eeeeeee--CCcEEEEecCCCC-CCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCe-E
Q psy731           65 PVSLDKW--HDRLFLAVPRHKN-GVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDR-L  140 (494)
Q Consensus        65 p~gv~v~--~gRlFvt~PR~~~-gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~-L  140 (494)
                      |.++++.  ++++|++-+.-.. +...++..+.....         -.+.-++.       .   ..+..+.++++++ |
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~---------~~~~~~~~-------~---~~~~~~~~s~dg~~l  103 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL---------EVTQAIHN-------D---LKPFGATINNTTQTL  103 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC---------CEEEEEEE-------S---SCCCSEEEETTTTEE
T ss_pred             ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC---------eEEEEEec-------C---CCcceEEECCCCCEE
Confidence            5667773  4688888865221 12346666654321         12222221       1   1245677777775 9


Q ss_pred             EEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccc--cccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEE
Q psy731          141 WALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDY--TEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYN  217 (494)
Q Consensus       141 wvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~--~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd  217 (494)
                      |+.+.+..        .|.+||+.++++++++.++.....  .......+++++-     +..++|+++.+ .+.|.+||
T Consensus       104 ~v~~~~~~--------~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d  170 (353)
T 3vgz_A          104 WFGNTVNS--------AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVD  170 (353)
T ss_dssp             EEEETTTT--------EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEE
T ss_pred             EEEecCCC--------EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEc
Confidence            99988765        899999999999999988651000  0011245566653     56789999954 56799999


Q ss_pred             ccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731          218 YRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR  297 (494)
Q Consensus       218 ~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~  297 (494)
                      ..+++..+.-.                              ..+.....++++.     ++.++|+++. ...|.+||++
T Consensus       171 ~~~~~~~~~~~------------------------------~~~~~~~~~~~s~-----dg~~l~~~~~-~~~i~~~d~~  214 (353)
T 3vgz_A          171 GGNIKLKTAIQ------------------------------NTGKMSTGLALDS-----EGKRLYTTNA-DGELITIDTA  214 (353)
T ss_dssp             TTTTEEEEEEC------------------------------CCCTTCCCCEEET-----TTTEEEEECT-TSEEEEEETT
T ss_pred             CCCCceEEEec------------------------------CCCCccceEEECC-----CCCEEEEEcC-CCeEEEEECC
Confidence            99887655410                              0011233455542     4578999986 6789999999


Q ss_pred             CCcEEEEe-cCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccc
Q psy731          298 TNDSHIIH-HNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSN  376 (494)
Q Consensus       298 ~~~swrv~-~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~  376 (494)
                      +++..+.. .....  |              .....+|+++|+    ++.||.....+..++.+..+-   ..     ..
T Consensus       215 ~~~~~~~~~~~~~~--~--------------~~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~---~~-----~~  266 (353)
T 3vgz_A          215 DNKILSRKKLLDDG--K--------------EHFFINISLDTA----RQRAFITDSKAAEVLVVDTRN---GN-----IL  266 (353)
T ss_dssp             TTEEEEEEECCCSS--S--------------CCCEEEEEEETT----TTEEEEEESSSSEEEEEETTT---CC-----EE
T ss_pred             CCeEEEEEEcCCCC--C--------------CcccceEEECCC----CCEEEEEeCCCCEEEEEECCC---Cc-----EE
Confidence            88754332 21111  0              012567999987    368888776656777665421   11     11


Q ss_pred             cceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EEE
Q psy731          377 FDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LWV  455 (494)
Q Consensus       377 ~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwv  455 (494)
                      ..+. .+      ...++++++....+|++.-..+.|..||+.+++.     ...+..  .  ..|.++.++++|. |||
T Consensus       267 ~~~~-~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-----~~~~~~--~--~~~~~~~~s~dg~~l~v  330 (353)
T 3vgz_A          267 AKVA-AP------ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKV-----VKTFDT--P--THPNSLALSADGKTLYV  330 (353)
T ss_dssp             EEEE-CS------SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEE-----EEEEEC--C--SEEEEEEECTTSCEEEE
T ss_pred             EEEE-cC------CCceEEECCCCCEEEEEECCCCeEEEEECCCCeE-----EEEEec--C--CCCCeEEEcCCCCEEEE
Confidence            1111 11      2356899944445999999999999999987421     122222  1  3688999999985 888


Q ss_pred             EecCchhhhcCCCCCCcccEEEEEEec
Q psy731          456 LSNKLPVFLYSKLKPEDINVRIFKSTV  482 (494)
Q Consensus       456 lsnrl~~~~~~~~~~~~~nfrI~r~~~  482 (494)
                      ...+-..    +-...+-+=.|+|+++
T Consensus       331 ~~~~~~~----~~~~~~~~~~v~~i~l  353 (353)
T 3vgz_A          331 SVKQKST----KQQEATQPDDVIRIAL  353 (353)
T ss_dssp             EEECCCB----TTBCCSSCEEEEEEEC
T ss_pred             EEccccc----ccccccCCCcEEEEeC
Confidence            7643111    1112233456777653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.10  E-value=3.7e-08  Score=102.01  Aligned_cols=225  Identities=18%  Similarity=0.227  Sum_probs=148.6

Q ss_pred             CceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCc----EEEEEEcCCCccccccCCccceEEEeecCCCC
Q psy731          125 NLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQM----QIRFFQLKEKTDYTEESKFSNMVVDVTSANCD  199 (494)
Q Consensus       125 ~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~----vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~  199 (494)
                      .+.++.++..|. .++||+.|....        +|.++++....    ... + +..     .-.....++||.     .
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~--------~I~~~~~~g~~~~~~~~~-~-~~~-----~~~~p~glavD~-----~  169 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQR--------MICSTQLDRAHGVSSYDT-V-ISR-----DIQAPDGLAVDW-----I  169 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTT--------EEEEEEC------CCCEE-E-ECS-----SCSCEEEEEEET-----T
T ss_pred             ccCcceEEeeeeccCceEEEecCCC--------eEEEEEcccCCCCCcceE-E-EeC-----CCCCcccEEEEe-----c
Confidence            467788999995 789999999887        89999987632    111 1 111     233456788984     4


Q ss_pred             CcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCc
Q psy731          200 NAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDA  279 (494)
Q Consensus       200 ~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~  279 (494)
                      ++.+|++|+..+.|.|+|++......+-.                              .......+|+||.     .++
T Consensus       170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l~~------------------------------~~~~~P~~iavdp-----~~g  214 (400)
T 3p5b_L          170 HSNIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------ENGSKPRAIVVDP-----VHG  214 (400)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCSEEEEEE------------------------------CSSCCEEEEEEET-----TTT
T ss_pred             CCceEEEECCCCeEEEEeCCCCceEEEEe------------------------------CCCCCcceEEEec-----ccC
Confidence            78999999999999999997665433311                              1123467899995     358


Q ss_pred             EEEEecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceE
Q psy731          280 FLYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEF  358 (494)
Q Consensus       280 ~~YI~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly  358 (494)
                      ++|++|.+. +.|.++++.......+....                +.+   -.|||++++    .+.|||.-....+++
T Consensus       215 ~ly~td~~~~~~I~~~~~dG~~~~~~~~~~----------------l~~---P~glavd~~----~~~lY~aD~~~~~I~  271 (400)
T 3p5b_L          215 FMYWTDWGTPAKIKKGGLNGVDIYSLVTEN----------------IQW---PNGITLDLL----SGRLYWVDSKLHSIS  271 (400)
T ss_dssp             EEEEEECSSSCCEEEEETTSCSCEEEECSS----------------CSC---EEEEEEETT----TTEEEEEETTTTEEE
T ss_pred             eEEEEeCCCCCEEEEEeCCCCccEEEEECC----------------CCc---eEEEEEEeC----CCEEEEEECCCCEEE
Confidence            999999774 67888888765433332211                112   466999986    369999776666777


Q ss_pred             eeechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCC
Q psy731          359 AVTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNA  437 (494)
Q Consensus       359 ~V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~  437 (494)
                      ++...    ..        ..+.+.+ .+......|++++  .+.||+++...++|.++|..+|     +...+|..   
T Consensus       272 ~~d~d----G~--------~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G-----~~~~~i~~---  329 (400)
T 3p5b_L          272 SIDVN----GG--------NRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG-----SDVNLLAE---  329 (400)
T ss_dssp             EEETT----SC--------CCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSC-----CCCEEEEC---
T ss_pred             EEeCC----CC--------ccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCC-----CceEEEec---
Confidence            77532    11        1112222 1223456789997  6799999999999999996554     23455543   


Q ss_pred             eEecccceEEcC
Q psy731          438 TLIYPSDIRVDR  449 (494)
Q Consensus       438 ~l~~pd~~~id~  449 (494)
                      .+.-|.++.+-+
T Consensus       330 ~~~~p~~i~v~~  341 (400)
T 3p5b_L          330 NLLSPEDMVLFH  341 (400)
T ss_dssp             SCSCEEEEEEES
T ss_pred             CCCCCceEEEEe
Confidence            245688888754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.10  E-value=1.5e-08  Score=104.89  Aligned_cols=181  Identities=12%  Similarity=0.112  Sum_probs=123.4

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCc----eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTND----SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSA  274 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~----~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~  274 (494)
                      .++.+|++|...+.|..+++....    ...+-                              ........+|+||.   
T Consensus       122 ~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~------------------------------~~~~~~p~glavD~---  168 (400)
T 3p5b_L          122 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------------------------------SRDIQAPDGLAVDW---  168 (400)
T ss_dssp             TTTEEEEEETTTTEEEEEEC------CCCEEEE------------------------------CSSCSCEEEEEEET---
T ss_pred             ccCceEEEecCCCeEEEEEcccCCCCCcceEEE------------------------------eCCCCCcccEEEEe---
Confidence            578999999999999999987532    22220                              01123457889984   


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC
Q psy731          275 NCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS  354 (494)
Q Consensus       275 ~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss  354 (494)
                        ..+.+|++|...+.|.|+++.+...-.+....+                   ..-.|||++|.    .+.|||.-...
T Consensus       169 --~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~-------------------~~P~~iavdp~----~g~ly~td~~~  223 (400)
T 3p5b_L          169 --IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG-------------------SKPRAIVVDPV----HGFMYWTDWGT  223 (400)
T ss_dssp             --TTTEEEEEETTTTEEEEECTTTCSEEEEEECSS-------------------CCEEEEEEETT----TTEEEEEECSS
T ss_pred             --cCCceEEEECCCCeEEEEeCCCCceEEEEeCCC-------------------CCcceEEEecc----cCeEEEEeCCC
Confidence              257899999999999999988665433332111                   11357999886    36999976542


Q ss_pred             -cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeee
Q psy731          355 -TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVA  433 (494)
Q Consensus       355 -~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~  433 (494)
                       .+++++...    .+        ..+.+...+ .....|+++|+.+|.||+++...+.|.+.|.++      .+..+++
T Consensus       224 ~~~I~~~~~d----G~--------~~~~~~~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~  284 (400)
T 3p5b_L          224 PAKIKKGGLN----GV--------DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTIL  284 (400)
T ss_dssp             SCCEEEEETT----SC--------SCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CCCEEEE
T ss_pred             CCEEEEEeCC----CC--------ccEEEEECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCC------CccEEEE
Confidence             466665431    11        122232222 245789999988999999999999999999987      2456777


Q ss_pred             ecCCeEecccceEEcCCceEEEEe
Q psy731          434 EDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       434 ~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      .....|.+|.++.++ ++.||++.
T Consensus       285 ~~~~~l~~P~gl~v~-~~~lywtd  307 (400)
T 3p5b_L          285 EDEKRLAHPFSLAVF-EDKVFWTD  307 (400)
T ss_dssp             ECSSTTSSEEEEEEE-TTEEEEEE
T ss_pred             eCCCCCCCCEEEEEe-CCEEEEec
Confidence            665678999999996 45788875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.08  E-value=8.6e-08  Score=93.12  Aligned_cols=243  Identities=13%  Similarity=0.047  Sum_probs=151.7

Q ss_pred             EeeEEEcCCC-eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDPCD-RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~~~-~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      ++.+.+++++ +||+.+.+...  .....+|.+||+.++++++++..+.        ....+.++-     ++.++|+++
T Consensus        43 ~~~~~~s~dg~~l~~~~~~~~~--~~~~~~v~~~d~~~~~~~~~~~~~~--------~~~~~~~s~-----dg~~l~v~~  107 (353)
T 3vgz_A           43 AYEMAYSQQENALWLATSQSRK--LDKGGVVYRLDPVTLEVTQAIHNDL--------KPFGATINN-----TTQTLWFGN  107 (353)
T ss_dssp             EEEEEEETTTTEEEEEECCCTT--TEESEEEEEECTTTCCEEEEEEESS--------CCCSEEEET-----TTTEEEEEE
T ss_pred             ccceEECCCCCEEEEEcCCCcC--CCCCccEEEEcCCCCeEEEEEecCC--------CcceEEECC-----CCCEEEEEe
Confidence            4567777765 78888876431  1113389999999999999888655        245666653     567899999


Q ss_pred             CCCCeEEEEEccCCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      ...+.|.+||..+++..+ +..+.. ..|                    + .........++++.     ++.++|+++.
T Consensus       108 ~~~~~v~~~d~~~~~~~~~~~~~~~-~~~--------------------~-~~~~~~~~~~~~s~-----dg~~l~~~~~  160 (353)
T 3vgz_A          108 TVNSAVTAIDAKTGEVKGRLVLDDR-KRT--------------------E-EVRPLQPRELVADD-----ATNTVYISGI  160 (353)
T ss_dssp             TTTTEEEEEETTTCCEEEEEESCCC-CCC--------------------S-SCCCCEEEEEEEET-----TTTEEEEEEE
T ss_pred             cCCCEEEEEeCCCCeeEEEEecCCC-ccc--------------------c-ccCCCCCceEEECC-----CCCEEEEEec
Confidence            999999999999998744 321100 000                    0 00011234566653     3578999985


Q ss_pred             C-CCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh
Q psy731          287 G-HNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV  364 (494)
Q Consensus       287 ~-~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~  364 (494)
                      . ...|.+||.++++.-+... ..                    ....+++++|+    ++.||+....+ .++.+..+-
T Consensus       161 ~~~~~i~~~d~~~~~~~~~~~~~~--------------------~~~~~~~~s~d----g~~l~~~~~~~-~i~~~d~~~  215 (353)
T 3vgz_A          161 GKESVIWVVDGGNIKLKTAIQNTG--------------------KMSTGLALDSE----GKRLYTTNADG-ELITIDTAD  215 (353)
T ss_dssp             SSSCEEEEEETTTTEEEEEECCCC--------------------TTCCCCEEETT----TTEEEEECTTS-EEEEEETTT
T ss_pred             CCCceEEEEcCCCCceEEEecCCC--------------------CccceEEECCC----CCEEEEEcCCC-eEEEEECCC
Confidence            4 5669999999887544322 11                    12456899987    36888876543 565554321


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccc
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSD  444 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~  444 (494)
                         ..     ....+. .+..|+.....++++++..+.||++....+.|.+||+.+++.     ...+..     .-|.+
T Consensus       216 ---~~-----~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~-----~~~~~  276 (353)
T 3vgz_A          216 ---NK-----ILSRKK-LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI-----LAKVAA-----PESLA  276 (353)
T ss_dssp             ---TE-----EEEEEE-CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE-----EEEEEC-----SSCCC
T ss_pred             ---Ce-----EEEEEE-cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-----EEEEEc-----CCCce
Confidence               11     111111 223333344567899955557999998889999999987422     122222     22567


Q ss_pred             eEEcCCce-EEEEe
Q psy731          445 IRVDRTGV-LWVLS  457 (494)
Q Consensus       445 ~~id~~g~-Lwvls  457 (494)
                      +.++++|. ||+..
T Consensus       277 ~~~s~dg~~l~v~~  290 (353)
T 3vgz_A          277 VLFNPARNEAYVTH  290 (353)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEECCCCCEEEEEE
Confidence            88888875 88876

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.03  E-value=2.5e-08  Score=100.43  Aligned_cols=178  Identities=16%  Similarity=0.139  Sum_probs=122.6

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCce--eEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDS--HIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC  276 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~--~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c  276 (494)
                      .++.+|++|...+.|.++++..+..  +.+.                               .......+|++|-     
T Consensus        45 ~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~-------------------------------~~l~~p~glavd~-----   88 (318)
T 3sov_A           45 SHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-------------------------------SGLLSPDGLACDW-----   88 (318)
T ss_dssp             GGTEEEEEETTTTEEEEEETTSSSCCCEEEE-------------------------------ECCSCCCEEEEET-----
T ss_pred             CCCEEEEEECCCCcEEEEEccCCCceEEEEc-------------------------------CCCCCccEEEEEc-----
Confidence            5789999999999999999877642  1121                               1112356788984     


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-Cc
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-ST  355 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-s~  355 (494)
                      .++.+|++|.....|.|+++.+.....+....+                   ..-.|||++|.    .+.||+.-.. ..
T Consensus        89 ~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~-------------------~~P~giavdp~----~g~ly~td~~~~~  145 (318)
T 3sov_A           89 LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQEL-------------------DQPRAIALDPS----SGFMYWTDWGEVP  145 (318)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------------SSEEEEEEEGG----GTEEEEEECSSSC
T ss_pred             CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCC-------------------CCccEEEEeCC----CCEEEEEecCCCC
Confidence            357899999999999999988654322221110                   11357999886    3699997654 45


Q ss_pred             ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED  435 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d  435 (494)
                      +++++...    .+        ..+.+.+.+ ...+.|+++|+.+|.||+++...+.|.++|.++      .+..+++. 
T Consensus       146 ~I~r~~~d----G~--------~~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG------~~~~~~~~-  205 (318)
T 3sov_A          146 KIERAGMD----GS--------SRFIIINSE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG------TNRQAVVK-  205 (318)
T ss_dssp             EEEEEETT----SC--------SCEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEEC-
T ss_pred             EEEEEEcC----CC--------CeEEEEECC-CCCccEEEEeccCCEEEEEECCCCEEEEEcCCC------CceEEEec-
Confidence            77777432    11        112232222 245689999977999999999999999999987      24456654 


Q ss_pred             CCeEecccceEEcCCceEEEEe
Q psy731          436 NATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       436 ~~~l~~pd~~~id~~g~Lwvls  457 (494)
                       ..+.+|.|+.++. +.||++.
T Consensus       206 -~~~~~P~glav~~-~~lywtd  225 (318)
T 3sov_A          206 -GSLPHPFALTLFE-DILYWTD  225 (318)
T ss_dssp             -SCCSCEEEEEEET-TEEEEEE
T ss_pred             -CCCCCceEEEEeC-CEEEEEe
Confidence             4578999999985 4677774

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.03  E-value=2.2e-08  Score=99.27  Aligned_cols=223  Identities=12%  Similarity=0.092  Sum_probs=132.9

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCc-EEEEEEcCCCcc--ccccCCccceEEEeecCCCCC
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQM-QIRFFQLKEKTD--YTEESKFSNMVVDVTSANCDN  200 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~-vi~~~~lp~~~~--~~~~S~l~d~vVD~~~~~c~~  200 (494)
                      ..+.++.++.+|++++|||.|.+..        +|.+||+.... .++++.-+...-  ...-....++++|-     .+
T Consensus        88 ~~~~~p~gia~d~~g~l~v~d~~~~--------~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~-----~~  154 (329)
T 3fvz_A           88 NLFYLPHGLSIDTDGNYWVTDVALH--------QVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP-----ST  154 (329)
T ss_dssp             TTCSSEEEEEECTTSCEEEEETTTT--------EEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT-----TT
T ss_pred             CccCCceEEEECCCCCEEEEECCCC--------EEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC-----CC
Confidence            3567899999999999999999887        89999986653 444442211000  01122456677762     37


Q ss_pred             cEEEEeeC-CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCc
Q psy731          201 AFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDA  279 (494)
Q Consensus       201 ~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~  279 (494)
                      +.+||+|+ +.+.|.+||.+....+.+........|                     ....-.....|++|.     +.+
T Consensus       155 g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~---------------------~~~~~~~p~gia~d~-----~~g  208 (329)
T 3fvz_A          155 GAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSP---------------------RPGQFSVPHSLALVP-----HLD  208 (329)
T ss_dssp             CCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSC---------------------CTTEESCEEEEEEET-----TTT
T ss_pred             CeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCC---------------------CCcccCCCcEEEEEC-----CCC
Confidence            89999998 789999999544434444211100000                     000112357788884     247


Q ss_pred             EEEEecCCCCeEEEEEcCCCcEEEE-ecCCcccCCCCcceEEcCEEeeeecceeeeeecc------CCCCCceeEEEeeC
Q psy731          280 FLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSP------LTRDNFRVMYFHPL  352 (494)
Q Consensus       280 ~~YI~D~~~~gliVydl~~~~swrv-~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp------~~~~g~r~LYf~pl  352 (494)
                      .+|++|...+.|.+||..+++.-+. ......                  .++.+++.+|      +   |  .+|..-.
T Consensus       209 ~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~------------------~~~~~~~~~pg~~~~~~---g--~~~v~~~  265 (329)
T 3fvz_A          209 QLCVADRENGRIQCFKTDTKEFVREIKHASFG------------------RNVFAISYIPGFLFAVN---G--KPYFGDQ  265 (329)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEECCTTTT------------------TCEEEEEEETTEEEEEE---C--CCCTTCS
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEEeccccC------------------CCcceeeecCCEEEEeC---C--CEEeccC
Confidence            8999999999999999986654332 222111                  1123344443      2   1  2333322


Q ss_pred             CCcceEeeechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          353 ASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       353 ss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ...+.+.+..+   +.        +.++.++. .+......++++| .+|.||+++...+.|.+|+.++
T Consensus       266 ~~~~v~~~~~~---~g--------~~~~~~~~~~~~~~~p~~ia~~-~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          266 EPVQGFVMNFS---SG--------EIIDVFKPVRKHFDMPHDIVAS-EDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CCCCEEEEETT---TC--------CEEEEECCSSSCCSSEEEEEEC-TTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCcEEEEEEcC---CC--------eEEEEEcCCCCccCCeeEEEEC-CCCCEEEEECCCCEEEEEeCCc
Confidence            33334333221   11        11222321 2223446799999 7899999999999999999876

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.02  E-value=3.6e-09  Score=117.62  Aligned_cols=213  Identities=12%  Similarity=0.100  Sum_probs=135.3

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  236 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~  236 (494)
                      .|.++++.+.++...        .........+++|.     .++.+|++|.....|.++++........ .  .     
T Consensus       387 ~I~~id~~~~~~~~~--------~~~~~~p~gla~d~-----~~~~Ly~sD~~~~~I~~~~~~g~~~~~~-~--~-----  445 (699)
T 1n7d_A          387 EVRKMTLDRSEYTSL--------IPNLRNVVALDTEV-----ASNRIYWSDLSQRMICSTQLDRAHGVSS-Y--D-----  445 (699)
T ss_dssp             C-CEECTTSCCEECC--------SCCCTTCCCCEEET-----TTTEEEECCTTTTSBEEEESCCCCC-CC-C--C-----
T ss_pred             ceEEEeCCCCcceee--------eccCcceEEEcccc-----ccCeEEEEecCCCeEEEEecCCCCCCcc-e--E-----
Confidence            455666666554431        11223445666764     5789999999999999999875210000 0  0     


Q ss_pred             CCccccCCccceeeeeccccccc-ccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          237 FGDFTIGGEYSEFFQLKEKTDYT-EESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       237 ~~~f~i~g~~~~~f~l~~~~~~~-~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                         .++. .......|+||..     .+.+|++|.....|.|+++.+.....+....+.     
T Consensus       446 -------------------~~i~~~~~~P~glavD~~-----~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~-----  496 (699)
T 1n7d_A          446 -------------------TVISRDIQAPDGLAVDWI-----HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS-----  496 (699)
T ss_dssp             -------------------CBCCSCC--CCCEECCCS-----SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC-----
T ss_pred             -------------------EEEeCCCCCcceEEEEee-----CCcEEEEeccCCeEEEEecCCCceEEEEeCCCC-----
Confidence                               0111 1123456788742     467999999999999999987654444322111     


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS  394 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~  394 (494)
                                    .-.|||++|.    .++|||.-... .+++++...    .+        ..+.+...+ .....|+
T Consensus       497 --------------~P~giavDp~----~g~ly~td~~~~~~I~~~~~d----G~--------~~~~l~~~~-l~~PnGl  545 (699)
T 1n7d_A          497 --------------KPRAIVVDPV----HGFMYWTDWGTPAKIKKGGLN----GV--------DIYSLVTEN-IQWPNGI  545 (699)
T ss_dssp             --------------CCCCEECCSS----SSCCEECCCSSSCCEEBCCSS----SC--------CCCEESCSS-CSSCCCE
T ss_pred             --------------CcceEEEccC----CCcEEEcccCCCCeEEEEeCC----CC--------CeeEEEeCC-CCCccEE
Confidence                          1346999986    36999976543 356555321    11        111222211 2457899


Q ss_pred             EeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          395 SLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       395 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      ++|+..|.||+++...+.|.+++.++      .+..+++.....+.+|.+|.++.+ .||++.
T Consensus       546 avd~~~~~LY~aD~~~~~I~~~d~dG------~~~~~~~~~~~~~~~P~glavd~~-~lywtd  601 (699)
T 1n7d_A          546 TLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTILEDEKRLAHPFSLAVFED-KVFWTD  601 (699)
T ss_dssp             EECTTTCCEEEEETTTTEEEEECSSS------SCCEEECCCSSSCSSCCCCEEETT-EEEEEC
T ss_pred             EEeccCCEEEEEecCCCeEEEEccCC------CceEEEEecCCcCCCceEeEEECC-EEEEEe
Confidence            99988899999999999999999987      245666655567899999999875 788775

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.02  E-value=7.1e-08  Score=90.93  Aligned_cols=238  Identities=13%  Similarity=0.159  Sum_probs=152.1

Q ss_pred             eeeeeee-eCCcEEE-EecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEE
Q psy731           64 LPVSLDK-WHDRLFL-AVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLW  141 (494)
Q Consensus        64 ~p~gv~v-~~gRlFv-t~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~Lw  141 (494)
                      -|.++.+ .+|++|+ +-..     -..|..+....          .....++.        .++..+.++.+|++++||
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~-----~~~i~~~~~~~----------~~~~~~~~--------~~~~~p~~i~~~~~g~l~   81 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGM-----YGRVVKLATGS----------TGTTVLPF--------NGLYQPQGLAVDGAGTVY   81 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSS-----SCEEEEECC---------------EECCC--------CSCCSCCCEEECTTCCEE
T ss_pred             CccceEECCCCCEEEEccCC-----CCcEEEecCCC----------cccceEee--------CCcCCcceeEECCCCCEE
Confidence            7889988 5789999 5321     12455554321          22222321        234557788999999999


Q ss_pred             EEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC
Q psy731          142 ALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN  221 (494)
Q Consensus       142 vlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~  221 (494)
                      |.|. ..        .|.+||..+..+.. +...      .......+++|      .++.+|++|...+.|.+||..+.
T Consensus        82 v~~~-~~--------~i~~~d~~~~~~~~-~~~~------~~~~p~~i~~~------~~g~l~v~~~~~~~i~~~~~~~~  139 (270)
T 1rwi_B           82 VTDF-NN--------RVVTLAAGSNNQTV-LPFD------GLNYPEGLAVD------TQGAVYVADRGNNRVVKLAAGSK  139 (270)
T ss_dssp             EEET-TT--------EEEEECTTCSCCEE-CCCC------SCSSEEEEEEC------TTCCEEEEEGGGTEEEEECTTCC
T ss_pred             EEcC-CC--------EEEEEeCCCceEee-eecC------CcCCCcceEEC------CCCCEEEEECCCCEEEEEECCCc
Confidence            9998 33        79999988765432 2211      22456677776      34569999999999999976554


Q ss_pred             ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcE
Q psy731          222 DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS  301 (494)
Q Consensus       222 ~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~s  301 (494)
                      .......                              ........|++|.      ++.+|++|.....|.+||..++..
T Consensus       140 ~~~~~~~------------------------------~~~~~p~~i~~~~------~g~l~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          140 TQTVLPF------------------------------TGLNDPDGVAVDN------SGNVYVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             SCEECCC------------------------------CSCCSCCCEEECT------TCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeEeecc------------------------------ccCCCceeEEEeC------CCCEEEEECCCCEEEEEecCCCce
Confidence            4332210                              0112346677773      245999998889999999887765


Q ss_pred             EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEE
Q psy731          302 HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKV  381 (494)
Q Consensus       302 wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~  381 (494)
                      .......+                   ....+|+++++   |  .||+....+..++.+..+-    ..        ...
T Consensus       184 ~~~~~~~~-------------------~~p~~i~~d~~---g--~l~v~~~~~~~v~~~~~~~----~~--------~~~  227 (270)
T 1rwi_B          184 VVLPFTDI-------------------TAPWGIAVDEA---G--TVYVTEHNTNQVVKLLAGS----TT--------STV  227 (270)
T ss_dssp             EECCCSSC-------------------CSEEEEEECTT---C--CEEEEETTTSCEEEECTTC----SC--------CEE
T ss_pred             EeecccCC-------------------CCceEEEECCC---C--CEEEEECCCCcEEEEcCCC----Cc--------cee
Confidence            43211110                   23567999875   2  8999887666777775421    10        011


Q ss_pred             ecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          382 MGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       382 ~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ....| .....++++| .+|+||+++...+.|.+++...
T Consensus       228 ~~~~~-~~~p~~i~~~-~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          228 LPFTG-LNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             CCCCS-CSCEEEEEEC-TTCCEEEEEGGGTEEEEECCCG
T ss_pred             eccCC-CCCceeEEEC-CCCCEEEEECCCCEEEEEcCCC
Confidence            11111 1345789999 7899999999999999999876

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.02  E-value=3e-08  Score=102.84  Aligned_cols=187  Identities=13%  Similarity=0.068  Sum_probs=121.8

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      .++.+|++|...+.|.++|++++...++...                               ..... ++++.     ++
T Consensus       140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-------------------------------~~~~~-ia~~~-----~g  182 (409)
T 3hrp_A          140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-------------------------------FKGGK-PAVTK-----DK  182 (409)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEET-------------------------------CCBCB-CEECT-----TS
T ss_pred             CCCCEEEEecCCCcEEEEECCCCEEEEeecc-------------------------------CCCCc-eeEec-----CC
Confidence            3566999999999999999999988777210                               11122 56653     35


Q ss_pred             cEEEEecCCCC-eEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcce
Q psy731          279 AFLYIADSGHN-HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTE  357 (494)
Q Consensus       279 ~~~YI~D~~~~-gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~l  357 (494)
                      .++|++|.... .|.++|..++...+.... ..+.              ...+..+||++|+    +..||+.-. ..++
T Consensus       183 ~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~-~~~~--------------~~~~p~~iav~p~----~g~lyv~d~-~~~I  242 (409)
T 3hrp_A          183 QRVYSIGWEGTHTVYVYMKASGWAPTRIGQ-LGST--------------FSGKIGAVALDET----EEWLYFVDS-NKNF  242 (409)
T ss_dssp             SEEEEEBSSTTCEEEEEEGGGTTCEEEEEE-CCTT--------------SCSCCCBCEECTT----SSEEEEECT-TCEE
T ss_pred             CcEEEEecCCCceEEEEEcCCCceeEEeee-ccch--------------hcCCcEEEEEeCC----CCeEEEEEC-CCcE
Confidence            68999998665 899999887765433210 0000              0123567999985    258999544 4478


Q ss_pred             EeeechhhcCCCcCccccccceEEecccCCCCCC-C-eEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec
Q psy731          358 FAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQS-G-ASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED  435 (494)
Q Consensus       358 y~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs-~-g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d  435 (494)
                      +++..+--   ..      ..+...+..|..... . ++++|+..|.||+++...+.|.+|+.++  .     ..+++-.
T Consensus       243 ~~~d~~~~---~~------~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g--~-----~~~~~g~  306 (409)
T 3hrp_A          243 GRFNVKTQ---EV------TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG--E-----CEWFCGS  306 (409)
T ss_dssp             EEEETTTC---CE------EEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC--C-----EEEEEEC
T ss_pred             EEEECCCC---CE------EEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC--C-----EEEEEeC
Confidence            88764311   10      111111111111111 2 9999966899999999999999999987  2     2333322


Q ss_pred             C------------CeEecccceEEcCCceEEEEec
Q psy731          436 N------------ATLIYPSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       436 ~------------~~l~~pd~~~id~~g~Lwvlsn  458 (494)
                      .            .+|.+|.++.+|++|.|||.-.
T Consensus       307 ~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~  341 (409)
T 3hrp_A          307 ATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG  341 (409)
T ss_dssp             TTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred             CCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence            1            3488999999999999999854

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.00  E-value=3.9e-08  Score=111.10  Aligned_cols=182  Identities=12%  Similarity=0.114  Sum_probs=123.9

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCc----eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTND----SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSA  274 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~----~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~  274 (494)
                      .++.+|+||...+.|.++++....    ...+-                              ........+|+||-.  
T Consensus       434 ~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi------------------------------~~~l~~P~GLAvD~~--  481 (791)
T 3m0c_C          434 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI------------------------------SRDIQAPDGLAVDWI--  481 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEEC--------CEEEE------------------------------CSSCSCCCEEEEETT--
T ss_pred             cCCeeEEeeccceeEEEEeccCCCCCcceeEEE------------------------------ecCCCCcceeeeeec--
Confidence            578999999999999999987532    11220                              011234578999953  


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC
Q psy731          275 NCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS  354 (494)
Q Consensus       275 ~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss  354 (494)
                         .+.+|++|...+.|.|+++.+.....+....+.                   .-.||||+|.    .+.|||.-...
T Consensus       482 ---~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~-------------------~P~gIaVDp~----~g~LYwtD~g~  535 (791)
T 3m0c_C          482 ---HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-------------------KPRAIVVDPV----HGFMYWTDWGT  535 (791)
T ss_dssp             ---TTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-------------------CEEEEEEETT----TTEEEEEECSS
T ss_pred             ---CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC-------------------CcceEEEecC----CCCEEEecCCC
Confidence               568999999999999999986654333322111                   1457999986    36999987544


Q ss_pred             -cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeee
Q psy731          355 -TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVA  433 (494)
Q Consensus       355 -~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~  433 (494)
                       .+++++..    +.+        ..+.+...+ .....|+++|+.+|.||+++...+.|.+.+.++      .+..+++
T Consensus       536 ~~~I~~~~~----dG~--------~~~~lv~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG------~~~~~v~  596 (791)
T 3m0c_C          536 PAKIKKGGL----NGV--------DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTIL  596 (791)
T ss_dssp             SCEEEEEET----TSC--------CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEE
T ss_pred             CCeEEEEec----CCC--------ceEEEEeCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCC------CceEEEe
Confidence             35555432    111        222333322 245789999988999999999999999999988      2456666


Q ss_pred             ecCCeEecccceEEcCCceEEEEec
Q psy731          434 EDNATLIYPSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       434 ~d~~~l~~pd~~~id~~g~Lwvlsn  458 (494)
                      .....|..|-+|.++ +++||++-.
T Consensus       597 ~~~~~l~~P~glav~-~~~lYwtD~  620 (791)
T 3m0c_C          597 EDEKRLAHPFSLAVF-EDKVFWTDI  620 (791)
T ss_dssp             ECTTTTSSEEEEEEE-TTEEEEEET
T ss_pred             cCCCccCCCCEEEEe-CCEEEEEEC
Confidence            655677889999985 458999853

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.00  E-value=1.6e-07  Score=93.38  Aligned_cols=235  Identities=12%  Similarity=0.009  Sum_probs=143.2

Q ss_pred             eEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          127 TSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       127 vsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      .-..++..|+ .++||++|....        +|.+||+.++++. .+.++.        ....+..+      .++.+||
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~--------~i~~~d~~~~~~~-~~~~~~--------~v~~i~~~------~dg~l~v  105 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILER--------ELHELHLASGRKT-VHALPF--------MGSALAKI------SDSKQLI  105 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGT--------EEEEEETTTTEEE-EEECSS--------CEEEEEEE------ETTEEEE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCC--------EEEEEECCCCcEE-EEECCC--------cceEEEEe------CCCeEEE
Confidence            3445667776 478999998755        8999999988754 455443        34455554      2456777


Q ss_pred             eeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          206 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       206 tDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                      +.  ..+|.+||.++++..++.....                          ......++++++|.      ++.+|+++
T Consensus       106 ~~--~~gl~~~d~~~g~~~~~~~~~~--------------------------~~~~~~~~~i~~d~------~G~l~v~~  151 (326)
T 2ghs_A          106 AS--DDGLFLRDTATGVLTLHAELES--------------------------DLPGNRSNDGRMHP------SGALWIGT  151 (326)
T ss_dssp             EE--TTEEEEEETTTCCEEEEECSST--------------------------TCTTEEEEEEEECT------TSCEEEEE
T ss_pred             EE--CCCEEEEECCCCcEEEEeeCCC--------------------------CCCCCCCCCEEECC------CCCEEEEe
Confidence            76  3579999999998766622100                          01123466777774      23467876


Q ss_pred             CC------CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEe
Q psy731          286 SG------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFA  359 (494)
Q Consensus       286 ~~------~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~  359 (494)
                      ..      ..+|.++|  +++..++...                    .....||+++|+    ++.||+.--....++.
T Consensus       152 ~~~~~~~~~~~l~~~~--~g~~~~~~~~--------------------~~~~~~i~~s~d----g~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          152 MGRKAETGAGSIYHVA--KGKVTKLFAD--------------------ISIPNSICFSPD----GTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             EETTCCTTCEEEEEEE--TTEEEEEEEE--------------------ESSEEEEEECTT----SCEEEEEETTTCEEEE
T ss_pred             CCCcCCCCceEEEEEe--CCcEEEeeCC--------------------CcccCCeEEcCC----CCEEEEEECCCCEEEE
Confidence            53      35677777  3432222110                    112568999987    3789997655557777


Q ss_pred             eechhhcCC-CcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCe
Q psy731          360 VTTKVLQNR-SLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNAT  438 (494)
Q Consensus       360 V~T~~L~~~-~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~  438 (494)
                      +..+. .+. .+..   ...+..+...  ....+|+++| ++|+||++....+.|.+||+++  ..    +..+... . 
T Consensus       206 ~d~~~-~~Gl~~~~---~~~~~~~~~~--~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~~g--~~----~~~i~~~-~-  270 (326)
T 2ghs_A          206 VPLDA-RTGLPTGK---AEVFIDSTGI--KGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDG--NH----IARYEVP-G-  270 (326)
T ss_dssp             EEBCT-TTCCBSSC---CEEEEECTTS--SSEEEEEEEC-TTSCEEEEEETTTEEEEECTTC--CE----EEEEECS-C-
T ss_pred             EEccc-ccCCcccC---ceEEEECCCC--CCCCCeeEEC-CCCCEEEEEeCCCEEEEECCCC--CE----EEEEECC-C-
Confidence            75420 011 1110   0112222111  1345799999 8999999998889999999966  21    2333221 1 


Q ss_pred             EecccceEEc-CC-ceEEEEecCc
Q psy731          439 LIYPSDIRVD-RT-GVLWVLSNKL  460 (494)
Q Consensus       439 l~~pd~~~id-~~-g~Lwvlsnrl  460 (494)
                       ..|.++.++ ++ +.|||.+++-
T Consensus       271 -~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          271 -KQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             -SBEEEEEEESTTSCEEEEEEBCT
T ss_pred             -CCcEEEEEecCCCCEEEEEecCC
Confidence             357888886 55 4799998664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.97  E-value=2.4e-07  Score=101.88  Aligned_cols=221  Identities=15%  Similarity=0.162  Sum_probs=151.8

Q ss_pred             CceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          125 NLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       125 ~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ++.++.++..|. .++||+.|.+..        +|.++++....+...+.  .     +-.....++||.     ..+.+
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~--------~I~r~~~~g~~~~~v~~--~-----g~~~P~GlAvD~-----~~~~L   94 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLK--------TISRAFMNGSALEHVVE--F-----GLDYPEGMAVDW-----LGKNL   94 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTT--------EEEEEETTSCSCEEEEC--S-----SCSCCCEEEEET-----TTTEE
T ss_pred             CCCceEEEEEECCCCEEEEEECCCC--------eEEEEECCCCCcEEEEe--C-----CCCCcceEEEEe-----CCCEE
Confidence            467889999995 789999999876        89999998765433221  1     223467899985     57899


Q ss_pred             EEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      |+||+..+.|.|.|++......+-.                              .......+|+||.     .++++|+
T Consensus        95 Y~tD~~~~~I~v~~~dG~~~~~l~~------------------------------~~l~~P~~iavdp-----~~G~lY~  139 (628)
T 4a0p_A           95 YWADTGTNRIEVSKLDGQHRQVLVW------------------------------KDLDSPRALALDP-----AEGFMYW  139 (628)
T ss_dssp             EEEETTTTEEEEEETTSTTCEEEEC------------------------------SSCCCEEEEEEET-----TTTEEEE
T ss_pred             EEEECCCCEEEEEecCCCcEEEEEe------------------------------CCCCCcccEEEcc-----CCCeEEE
Confidence            9999999999999997554322211                              1123468899995     3589999


Q ss_pred             ecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          284 ADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       284 ~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      +|.+ .+.|.+.++.....-.+..                 .+.+   -+||||+++    .+.||+.-....+++++..
T Consensus       140 tD~g~~~~I~r~~~dG~~~~~l~~-----------------~~~~---P~GlalD~~----~~~LY~aD~~~~~I~~~d~  195 (628)
T 4a0p_A          140 TEWGGKPKIDRAAMDGSERTTLVP-----------------NVGR---ANGLTIDYA----KRRLYWTDLDTNLIESSNM  195 (628)
T ss_dssp             EECSSSCEEEEEETTSCSCEEEEC-----------------SCSS---EEEEEEETT----TTEEEEEETTTTEEEEEET
T ss_pred             eCCCCCCEEEEEeCCCCceEEEEC-----------------CCCC---cceEEEccc----cCEEEEEECCCCEEEEEcC
Confidence            9976 5678888877554332221                 1222   356999886    3699998777767777764


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecc
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP  442 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~p  442 (494)
                      .    ..        ..+.+.+.  .....|+++| + |.||+++...++|.+.|..+|     ++..++..   .+.+|
T Consensus       196 d----G~--------~~~v~~~~--l~~P~glav~-~-~~ly~tD~~~~~I~~~dk~tg-----~~~~~l~~---~~~~p  251 (628)
T 4a0p_A          196 L----GL--------NREVIADD--LPHPFGLTQY-Q-DYIYWTDWSRRSIERANKTSG-----QNRTIIQG---HLDYV  251 (628)
T ss_dssp             T----SC--------SCEEEEEC--CSCEEEEEEE-T-TEEEEEETTTTEEEEEETTTC-----CSCEEEEC---SCCSC
T ss_pred             C----CC--------ceEEeecc--CCCceEEEEE-C-CEEEEecCCCCEEEEEECCCC-----CceEEEec---CCCCc
Confidence            2    11        11223332  2456799999 4 899999999999999997654     24455543   24577


Q ss_pred             cceEEc
Q psy731          443 SDIRVD  448 (494)
Q Consensus       443 d~~~id  448 (494)
                      -++++-
T Consensus       252 ~~i~v~  257 (628)
T 4a0p_A          252 MDILVF  257 (628)
T ss_dssp             CEEEEE
T ss_pred             ceeeee
Confidence            787763

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.92  E-value=3.4e-07  Score=93.56  Aligned_cols=279  Identities=11%  Similarity=0.028  Sum_probs=165.4

Q ss_pred             cCCCeeeeeeee--CCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEE---
Q psy731           60 AENCLPVSLDKW--HDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQS---  134 (494)
Q Consensus        60 p~~~~p~gv~v~--~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~i---  134 (494)
                      ..+..|.++..+  ++|++++-  +..   .++..+..+.+    .   --.+ -+|....   +-+..+.+.++.+   
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~--l~~---g~V~~~~~~~~----~---~~~~-~~~~~s~---~g~~~~~~sGl~~~~~   73 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSN--LYK---GRIEVYNPKTQ----S---HFNV-VIDGASS---NGDGEQQMSGLSLLTH   73 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEE--TTT---TEEEEECTTTC----C---EEEE-CCTTTCC---SSCCSEEEEEEEESSS
T ss_pred             CcccCCcCccCcCCCCEEEEEe--ccC---CEEEEEcCCCC----e---EEEE-ecCCccc---cCCCcceeeEEEEecc
Confidence            467788888875  48998887  433   46777765322    0   0112 3554321   1234577899999   


Q ss_pred             cCCCeEEE-EeCCCCC----CCCCCCCEEEEEECC---CCcEEEEEEcCCCcccc--------ccCCccceEEEeecCCC
Q psy731          135 DPCDRLWA-LDSGVVE----GKMEQPPSVQVYDLR---QQMQIRFFQLKEKTDYT--------EESKFSNMVVDVTSANC  198 (494)
Q Consensus       135 D~~~~Lwv-lD~G~~~----~~~~~~Pklv~~dl~---t~~vi~~~~lp~~~~~~--------~~S~l~d~vVD~~~~~c  198 (494)
                      |+.+|||| .|.|..-    ....+...|++||++   |++++....|+.  +..        .-...||++||      
T Consensus        74 D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~--~~~~~~~~~g~~~~~~nDvavD------  145 (334)
T 2p9w_A           74 DNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK--VQDEFEKKAGKRPFGVVQSAQD------  145 (334)
T ss_dssp             SSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH--HHHHHHHHHSSCCEEEEEEEEC------
T ss_pred             CCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc--ccccccccccccccCCceeEEC------
Confidence            78899999 6754332    123456789999999   999988888865  111        11234555554      


Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      .++.+                                                                           
T Consensus       146 ~~Gna---------------------------------------------------------------------------  150 (334)
T 2p9w_A          146 RDGNS---------------------------------------------------------------------------  150 (334)
T ss_dssp             TTSCE---------------------------------------------------------------------------
T ss_pred             CCCCE---------------------------------------------------------------------------
Confidence            24444                                                                           


Q ss_pred             cEEEEecCCC-CeEEEEEcCCCc--EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          279 AFLYIADSGH-NHIVVYNYRTND--SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       279 ~~~YI~D~~~-~gliVydl~~~~--swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                         ||+|+.. +.|+.+|-....  .|-...      |...          -..|.+||+..|+    ++.|+.+-- +.
T Consensus       151 ---YVt~s~~~~~I~rV~pdG~~~~~~~~~~------~~~~----------~~~G~nGIv~~pd----g~~Liv~~~-~g  206 (334)
T 2p9w_A          151 ---YVAFALGMPAIARVSADGKTVSTFAWES------GNGG----------QRPGYSGITFDPH----SNKLIAFGG-PR  206 (334)
T ss_dssp             ---EEEEEESSCEEEEECTTSCCEEEEEECC------CCSS----------SCCSCSEEEEETT----TTEEEEESS-SS
T ss_pred             ---EEeCCCCCCeEEEEeCCCCEEeeeeecC------CCcc----------cccCcceEEEeCC----CCEEEEEcC-CC
Confidence               4444444 444444444331  121111      1000          1357899999987    357777655 66


Q ss_pred             ceEeeechhhcCCCcCccccccceEEe--cccCCCCCCCeE-EeeCCCCeE-EEeccCCCeEEEEeCCCCccccccceee
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFDFKVM--GSRGTGSQSGAS-SLDEETGVI-FYALLVKSGVGCWNTFRGEEYNEKSMGL  431 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~v~~~--G~~G~~~qs~g~-~~D~~~G~l-y~~~~~~~aI~~w~~~~~~~~~~~~~~~  431 (494)
                      ++|++..+   .+.      ...+..-  |..|...-.+|+ ..+ .+|.+ ++++-..+++...+.++   .  ++.++
T Consensus       207 ~L~~fD~~---~pv------~~~v~~~~~G~~~~~~~~dgilp~~-~~G~vllV~~~~~~~~~l~S~Dg---W--~sa~~  271 (334)
T 2p9w_A          207 ALTAFDVS---KPY------AWPEPVKINGDFGTLSGTEKIVTVP-VGNESVLVGARAPYAISFRSWDN---W--KSANI  271 (334)
T ss_dssp             SEEEEECS---SSS------CCCEECEESSCCCCCTTEEEEEEEE-ETTEEEEEEEETTEEEEEECSST---T--SEEEE
T ss_pred             eEEEEcCC---CCc------ceeecccccCCcccccCcccccccc-cCCEEEEEEcCCCCEEEEECCCC---c--ceeEE
Confidence            99999765   111      0123332  532333345775 666 67855 88887777777777765   2  34556


Q ss_pred             eeecCCeEecccceEEc------CCceEEEEecCchhhhcCCCCCCcccEEEEEEe
Q psy731          432 VAEDNATLIYPSDIRVD------RTGVLWVLSNKLPVFLYSKLKPEDINVRIFKST  481 (494)
Q Consensus       432 v~~d~~~l~~pd~~~id------~~g~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~  481 (494)
                      +..-+..+. +.++.++      .++.+|++...+..-.    .-+.--|.+.++.
T Consensus       272 ~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~f~~~~----~g~r~~f~~~di~  322 (334)
T 2p9w_A          272 KKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAFFDNGA----HGGRSDYPLYKLD  322 (334)
T ss_dssp             EEEECGGGG-SSCEEEEEEEEETTEEEEEEEECCGGGTT----TSCCCCEEEEECC
T ss_pred             eeeecCccc-cCceeEEEEeccccCCeEEEEeeecCCcc----cCCcceeechhhh
Confidence            655555555 8888877      6789999998887433    2223336766654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.91  E-value=5.5e-07  Score=87.20  Aligned_cols=222  Identities=14%  Similarity=0.172  Sum_probs=141.9

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEE
Q psy731          136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVV  215 (494)
Q Consensus       136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIV  215 (494)
                      ..+++||.+.+..        .|.+||+.++++++++.++.       ... .++++-     ++.++|+++.+.+.|.+
T Consensus         8 ~~~~~~v~~~~~~--------~v~~~d~~~~~~~~~~~~~~-------~~~-~~~~s~-----dg~~l~~~~~~~~~i~~   66 (331)
T 3u4y_A            8 TSNFGIVVEQHLR--------RISFFSTDTLEILNQITLGY-------DFV-DTAITS-----DCSNVVVTSDFCQTLVQ   66 (331)
T ss_dssp             CCCEEEEEEGGGT--------EEEEEETTTCCEEEEEECCC-------CEE-EEEECS-----SSCEEEEEESTTCEEEE
T ss_pred             CCCEEEEEecCCC--------eEEEEeCcccceeeeEEccC-------Ccc-eEEEcC-----CCCEEEEEeCCCCeEEE
Confidence            4678899998776        89999999999998887654       112 455532     56699999999999999


Q ss_pred             EEccCCce-eEE-ecCccccCCCCCccccCCccceeeeeccccccccccccee-eEEeeecCCCCCcEEEEecCCCC--e
Q psy731          216 YNYRTNDS-HII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN-MVVDVTSANCDDAFLYIADSGHN--H  290 (494)
Q Consensus       216 yd~~~~~~-~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~-i~VD~~~~~c~~~~~YI~D~~~~--g  290 (494)
                      ||+.+++. .+. ..                                ...... ++++.     ++.++|..+..+.  .
T Consensus        67 ~d~~~~~~~~~~~~~--------------------------------~~~~~~~~~~s~-----dg~~l~~~~~~~~~~~  109 (331)
T 3u4y_A           67 IETQLEPPKVVAIQE--------------------------------GQSSMADVDITP-----DDQFAVTVTGLNHPFN  109 (331)
T ss_dssp             EECSSSSCEEEEEEE--------------------------------CSSCCCCEEECT-----TSSEEEECCCSSSSCE
T ss_pred             EECCCCceeEEeccc--------------------------------CCCCccceEECC-----CCCEEEEecCCCCccc
Confidence            99999985 332 21                                111222 44442     4567775544434  8


Q ss_pred             EEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc---eEeeechhhcC
Q psy731          291 IVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT---EFAVTTKVLQN  367 (494)
Q Consensus       291 liVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~---ly~V~T~~L~~  367 (494)
                      |.+||+++++.-+....                    ..+..+++++|+    ++.||+.......   +|.+...    
T Consensus       110 i~v~d~~~~~~~~~~~~--------------------~~~~~~~~~spd----g~~l~~~~~~~~~~i~~~~~~~~----  161 (331)
T 3u4y_A          110 MQSYSFLKNKFISTIPI--------------------PYDAVGIAISPN----GNGLILIDRSSANTVRRFKIDAD----  161 (331)
T ss_dssp             EEEEETTTTEEEEEEEC--------------------CTTEEEEEECTT----SSCEEEEEETTTTEEEEEEECTT----
T ss_pred             EEEEECCCCCeEEEEEC--------------------CCCccceEECCC----CCEEEEEecCCCceEEEEEECCC----
Confidence            99999998875443211                    123467999997    3679987665444   5555431    


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceE
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIR  446 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~  446 (494)
                      ..+..  ..  .+.+ ..|  ....+++++ .+| .||++....+.|..||..++...  .....+...    ..|.++.
T Consensus       162 g~~~~--~~--~~~~-~~~--~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~~~~~~--~~~~~~~~~----~~~~~~~  227 (331)
T 3u4y_A          162 GVLFD--TG--QEFI-SGG--TRPFNITFT-PDGNFAFVANLIGNSIGILETQNPENI--TLLNAVGTN----NLPGTIV  227 (331)
T ss_dssp             CCEEE--EE--EEEE-CSS--SSEEEEEEC-TTSSEEEEEETTTTEEEEEECSSTTSC--EEEEEEECS----SCCCCEE
T ss_pred             CcEee--cC--Cccc-cCC--CCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCccc--ceeeeccCC----CCCceEE
Confidence            11111  00  1111 111  234688999 566 59999999999999999874220  002233221    5788999


Q ss_pred             EcCCce-EEEEe
Q psy731          447 VDRTGV-LWVLS  457 (494)
Q Consensus       447 id~~g~-Lwvls  457 (494)
                      ++++|. ||+.+
T Consensus       228 ~spdg~~l~v~~  239 (331)
T 3u4y_A          228 VSRDGSTVYVLT  239 (331)
T ss_dssp             ECTTSSEEEEEC
T ss_pred             ECCCCCEEEEEE
Confidence            999886 77764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.84  E-value=2.2e-08  Score=111.40  Aligned_cols=225  Identities=18%  Similarity=0.231  Sum_probs=142.4

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCC----cEEEEEEcCCCccccccCCccceEEEeecCCCCC
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQ----MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDN  200 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~----~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~  200 (494)
                      +.++.++.+|. .++||+.|....        +|.++++.+.    ....  .++     ..-.....++||.     .+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~--------~I~~~~~~g~~~~~~~~~--~i~-----~~~~~P~glavD~-----~~  464 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQR--------MICSTQLDRAHGVSSYDT--VIS-----RDIQAPDGLAVDW-----IH  464 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTT--------SBEEEESCCCCC-CCCCC--BCC-----SCC--CCCEECCC-----SS
T ss_pred             CcceEEEccccccCeEEEEecCCC--------eEEEEecCCCCCCcceEE--EEe-----CCCCCcceEEEEe-----eC
Confidence            44567778885 678999998876        7888888751    1111  111     1222345678874     46


Q ss_pred             cEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcE
Q psy731          201 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAF  280 (494)
Q Consensus       201 ~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~  280 (494)
                      +.+|+||...+.|.|+|+.......+-.                              ......++|+||.     .+++
T Consensus       465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~------------------------------~~~~~P~giavDp-----~~g~  509 (699)
T 1n7d_A          465 SNIYWTDSVLGTVSVADTKGVKRKTLFR------------------------------EQGSKPRAIVVDP-----VHGF  509 (699)
T ss_dssp             SBCEECCTTTSCEEEEBSSSCCEEEECC------------------------------CSSCCCCCEECCS-----SSSC
T ss_pred             CcEEEEeccCCeEEEEecCCCceEEEEe------------------------------CCCCCcceEEEcc-----CCCc
Confidence            7899999999999999988665444411                              0112356788885     2578


Q ss_pred             EEEecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEe
Q psy731          281 LYIADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFA  359 (494)
Q Consensus       281 ~YI~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~  359 (494)
                      +|++|.+. +.|.++++.......+..                ..+.++   .|||++|+    .+.|||.-....++++
T Consensus       510 ly~td~~~~~~I~~~~~dG~~~~~l~~----------------~~l~~P---nGlavd~~----~~~LY~aD~~~~~I~~  566 (699)
T 1n7d_A          510 MYWTDWGTPAKIKKGGLNGVDIYSLVT----------------ENIQWP---NGITLDLL----SGRLYWVDSKLHSISS  566 (699)
T ss_dssp             CEECCCSSSCCEEBCCSSSCCCCEESC----------------SSCSSC---CCEEECTT----TCCEEEEETTTTEEEE
T ss_pred             EEEcccCCCCeEEEEeCCCCCeeEEEe----------------CCCCCc---cEEEEecc----CCEEEEEecCCCeEEE
Confidence            99999765 678787775432211111                112233   45999986    3699998776667777


Q ss_pred             eechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCe
Q psy731          360 VTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNAT  438 (494)
Q Consensus       360 V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~  438 (494)
                      +...    ..        ..+.+.. .+..+...|+++| + +.||+++...+.|.++|+.+|.     ...+|..   .
T Consensus       567 ~d~d----G~--------~~~~~~~~~~~~~~P~glavd-~-~~lywtd~~~~~V~~~d~~~G~-----~~~~i~~---~  624 (699)
T 1n7d_A          567 IDVN----GG--------NRKTILEDEKRLAHPFSLAVF-E-DKVFWTDIINEAIFSANRLTGS-----DVNLLAE---N  624 (699)
T ss_dssp             ECSS----SS--------CCEEECCCSSSCSSCCCCEEE-T-TEEEEECSTTTCEEEEETTTEE-----EEECCCT---T
T ss_pred             EccC----CC--------ceEEEEecCCcCCCceEeEEE-C-CEEEEEeCCCCeEEEEEccCCC-----ceEEeec---C
Confidence            7542    11        1111221 1223557899999 4 5899999999999999987642     3344432   2


Q ss_pred             EecccceEEcCC
Q psy731          439 LIYPSDIRVDRT  450 (494)
Q Consensus       439 l~~pd~~~id~~  450 (494)
                      +..|.+|++.+.
T Consensus       625 ~~~P~~i~v~~~  636 (699)
T 1n7d_A          625 LLSPEDMVLFHQ  636 (699)
T ss_dssp             CSSCCCCCBCSS
T ss_pred             CCCCcEEEEeCc
Confidence            556888887543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=98.84  E-value=1.9e-06  Score=83.40  Aligned_cols=240  Identities=10%  Similarity=0.089  Sum_probs=144.3

Q ss_pred             eEEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcE-EEEEEcCCCccccccCCccc-eEEEeecCCCCCcEE
Q psy731          127 TSVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQ-IRFFQLKEKTDYTEESKFSN-MVVDVTSANCDNAFL  203 (494)
Q Consensus       127 vsV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~v-i~~~~lp~~~~~~~~S~l~d-~vVD~~~~~c~~~~v  203 (494)
                      ..+ .+.++++++ ||+.+.+..        +|.+||+.++++ .+.+....        .... ++++     .+..++
T Consensus        41 ~~~-~~~~s~dg~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~s-----~dg~~l   98 (331)
T 3u4y_A           41 DFV-DTAITSDCSNVVVTSDFCQ--------TLVQIETQLEPPKVVAIQEGQ--------SSMADVDIT-----PDDQFA   98 (331)
T ss_dssp             CEE-EEEECSSSCEEEEEESTTC--------EEEEEECSSSSCEEEEEEECS--------SCCCCEEEC-----TTSSEE
T ss_pred             Ccc-eEEEcCCCCEEEEEeCCCC--------eEEEEECCCCceeEEecccCC--------CCccceEEC-----CCCCEE
Confidence            344 778888876 999988776        899999999997 66555333        2233 6664     257788


Q ss_pred             EEeeCCCC--eEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEE
Q psy731          204 YIADSGHN--HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFL  281 (494)
Q Consensus       204 YItDs~~~--~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~  281 (494)
                      |+++...+  .|.|||+.+++..+.-.                               .......++++.     ++.++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~sp-----dg~~l  142 (331)
T 3u4y_A           99 VTVTGLNHPFNMQSYSFLKNKFISTIP-------------------------------IPYDAVGIAISP-----NGNGL  142 (331)
T ss_dssp             EECCCSSSSCEEEEEETTTTEEEEEEE-------------------------------CCTTEEEEEECT-----TSSCE
T ss_pred             EEecCCCCcccEEEEECCCCCeEEEEE-------------------------------CCCCccceEECC-----CCCEE
Confidence            86555545  89999999887654411                               111234556653     35679


Q ss_pred             EEecCCCCe-EEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEee
Q psy731          282 YIADSGHNH-IVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV  360 (494)
Q Consensus       282 YI~D~~~~g-liVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V  360 (494)
                      |+++..... |.+|++..+....-.               ..+.+....+..+++++|+    ++.||+....+..++.+
T Consensus       143 ~~~~~~~~~~i~~~~~~~~g~~~~~---------------~~~~~~~~~~~~~~~~spd----g~~l~v~~~~~~~v~v~  203 (331)
T 3u4y_A          143 ILIDRSSANTVRRFKIDADGVLFDT---------------GQEFISGGTRPFNITFTPD----GNFAFVANLIGNSIGIL  203 (331)
T ss_dssp             EEEEETTTTEEEEEEECTTCCEEEE---------------EEEEECSSSSEEEEEECTT----SSEEEEEETTTTEEEEE
T ss_pred             EEEecCCCceEEEEEECCCCcEeec---------------CCccccCCCCccceEECCC----CCEEEEEeCCCCeEEEE
Confidence            999988777 999998754321100               0111111234678999997    36899977655555555


Q ss_pred             echhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeCCCCccccccceeeee----ec
Q psy731          361 TTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNTFRGEEYNEKSMGLVA----ED  435 (494)
Q Consensus       361 ~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~----~d  435 (494)
                      ..+   ...     ....++.+. .  .....+++++ .+|. ||++....+.|..||..+|+ ..  .+..+.    .+
T Consensus       204 d~~---~~~-----~~~~~~~~~-~--~~~~~~~~~s-pdg~~l~v~~~~~~~i~~~d~~~~~-~~--~~~~~~~~~~~~  268 (331)
T 3u4y_A          204 ETQ---NPE-----NITLLNAVG-T--NNLPGTIVVS-RDGSTVYVLTESTVDVFNFNQLSGT-LS--FVKSFGHGLLID  268 (331)
T ss_dssp             ECS---STT-----SCEEEEEEE-C--SSCCCCEEEC-TTSSEEEEECSSEEEEEEEETTTTE-EE--EEEEEECCCCCC
T ss_pred             ECC---CCc-----ccceeeecc-C--CCCCceEEEC-CCCCEEEEEEcCCCEEEEEECCCCc-ee--eecccccccccC
Confidence            432   111     000122221 1  1345789999 5665 89998888999999998752 20  111111    11


Q ss_pred             CCeEecccceEEcCCc-eEEEEec
Q psy731          436 NATLIYPSDIRVDRTG-VLWVLSN  458 (494)
Q Consensus       436 ~~~l~~pd~~~id~~g-~Lwvlsn  458 (494)
                      .....-+.++.+.++| +||+.+.
T Consensus       269 ~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          269 PRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             CGGGTTCCCEEECTTSSEEEEEET
T ss_pred             CCCcccccceEECCCCCEEEEecC
Confidence            1111122457888887 5777753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.82  E-value=7.7e-07  Score=97.87  Aligned_cols=178  Identities=15%  Similarity=0.147  Sum_probs=123.4

Q ss_pred             CCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731          198 CDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       198 c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      +.++.+|+||...+.|.++++.......+-.                              .......+|+||-     .
T Consensus        46 ~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~------------------------------~g~~~P~GlAvD~-----~   90 (628)
T 4a0p_A           46 VTDNRIYWTDISLKTISRAFMNGSALEHVVE------------------------------FGLDYPEGMAVDW-----L   90 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSCCCEEEEET-----T
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCcEEEEe------------------------------CCCCCcceEEEEe-----C
Confidence            4789999999999999999987654433311                              0112356889984     3


Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-Ccc
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-STT  356 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-s~~  356 (494)
                      .+.+|++|.....|.|.++.+.....+....+                   ..-.+||++|.    .+.|||.-.. ..+
T Consensus        91 ~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l-------------------~~P~~iavdp~----~G~lY~tD~g~~~~  147 (628)
T 4a0p_A           91 GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDL-------------------DSPRALALDPA----EGFMYWTEWGGKPK  147 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSTTCEEEECSSC-------------------CCEEEEEEETT----TTEEEEEECSSSCE
T ss_pred             CCEEEEEECCCCEEEEEecCCCcEEEEEeCCC-------------------CCcccEEEccC----CCeEEEeCCCCCCE
Confidence            57899999999999999998665333322111                   11357999985    3599997654 336


Q ss_pred             eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecC
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN  436 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~  436 (494)
                      ++++..    |.+        ..+.+.+.  .....|+++|+.++.||+++...+.|.+.|.++  .    +.+++..  
T Consensus       148 I~r~~~----dG~--------~~~~l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~----~~~v~~~--  205 (628)
T 4a0p_A          148 IDRAAM----DGS--------ERTTLVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--L----NREVIAD--  205 (628)
T ss_dssp             EEEEET----TSC--------SCEEEECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--C----SCEEEEE--
T ss_pred             EEEEeC----CCC--------ceEEEECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--C----ceEEeec--
Confidence            666543    111        12233332  245789999977899999999999999999988  2    3345543  


Q ss_pred             CeEecccceEEcCCceEEEEe
Q psy731          437 ATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       437 ~~l~~pd~~~id~~g~Lwvls  457 (494)
                       .+..|.+++++. +.||++.
T Consensus       206 -~l~~P~glav~~-~~ly~tD  224 (628)
T 4a0p_A          206 -DLPHPFGLTQYQ-DYIYWTD  224 (628)
T ss_dssp             -CCSCEEEEEEET-TEEEEEE
T ss_pred             -cCCCceEEEEEC-CEEEEec
Confidence             367899999986 6899985

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.82  E-value=6.6e-07  Score=98.21  Aligned_cols=225  Identities=16%  Similarity=0.187  Sum_probs=144.3

Q ss_pred             CCceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          124 RNLTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       124 ~~lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      ..+..+.++.+|. .++||+.|.+..        +|.++++........+ +..     +-...+.++||.     .+..
T Consensus        37 ~~~~~~~~ld~~~~~~~ly~sD~~~~--------~I~r~~~~g~~~~~~v-~~~-----~~~~P~GlAvD~-----~~~~   97 (619)
T 3s94_A           37 GGLEDAAAVDFVFSHGLIYWSDVSEE--------AIKRTEFNKTESVQNV-VVS-----GLLSPDGLACDW-----LGEK   97 (619)
T ss_dssp             BCCSCEEEEEEETTTTEEEEEETTTT--------EEEEEEC-----CEEE-ECS-----SCSCEEEEEEET-----TTTE
T ss_pred             cCCCceEEEEEEeCCCEEEEEECCCC--------eEEEEEccCCCceEEE-EeC-----CCCCcCeEEEEe-----cCCE
Confidence            3567788999995 789999999877        8999998765321111 122     224567899985     5789


Q ss_pred             EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      +|+||+..+.|.|+|++......+-.                              .......+|+||.     .++++|
T Consensus        98 ly~~d~~~~~I~v~~~dG~~~~~l~~------------------------------~~l~~P~~Iavdp-----~~g~ly  142 (619)
T 3s94_A           98 LYWTDSETNRIEVSNLDGSLRKVLFW------------------------------QELDQPRAIALDP-----SSGFMY  142 (619)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEEEEC------------------------------SSCSCCCCEEEET-----TTTEEE
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEEEe------------------------------CCCCCCceEEEec-----CCCeEE
Confidence            99999999999999997554333311                              1123467899995     358999


Q ss_pred             EecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeee
Q psy731          283 IADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVT  361 (494)
Q Consensus       283 I~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~  361 (494)
                      ++|.+ .+.|.+.++.......+...                .+.+   -.||||+++    .+.||+.-....+++++.
T Consensus       143 ~tD~g~~~~I~r~~~dG~~~~~l~~~----------------~~~~---P~Glald~~----~~~LY~aD~~~~~I~~~~  199 (619)
T 3s94_A          143 WTDWGEVPKIERAGMDGSSRFIIINS----------------EIYW---PNGLTLDYE----EQKLYWADAKLNFIHKSN  199 (619)
T ss_dssp             EEECSSSCEEEEEETTSCSCEEEECS----------------SCSS---EEEEEEETT----TTEEEEEETTTCCEEEES
T ss_pred             EeccCCCCEEEEEECCCCceEEEEeC----------------CCCC---CcEEEEEcc----CCEEEEEeCCCCeEEEec
Confidence            99976 35677777765433322211                1223   356999986    369999876666777775


Q ss_pred             chhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      ..    ...    . ..   +.+ +......|++++ ++ .||+++...++|.+.|..+|.     +..++..+   +.-
T Consensus       200 ~d----G~~----~-~~---~~~-~~~~~P~gi~~~-~~-~ly~td~~~~~V~~~d~~tg~-----~~~~i~~~---~~~  256 (619)
T 3s94_A          200 LD----GTN----R-QA---VVK-GSLPHPFALTLF-ED-ILYWTDWSTHSILACNKYTGE-----GLREIHSD---IFS  256 (619)
T ss_dssp             SS----CCE----E-C-------------CCCEEES-SS-EEEEECTTTCSEEEEESSSCC-----CCEECCSC---CCC
T ss_pred             CC----CCc----c-EE---EEe-CCCCCceEEEEe-CC-EEEEecCCCCEEEEEECCCCc-----ccEEEecC---CCC
Confidence            42    110    0 11   111 112446799999 44 999999999999999987652     33455433   345


Q ss_pred             ccceEEc
Q psy731          442 PSDIRVD  448 (494)
Q Consensus       442 pd~~~id  448 (494)
                      |.++++-
T Consensus       257 p~~i~v~  263 (619)
T 3s94_A          257 PMDIHAF  263 (619)
T ss_dssp             CSEEEEC
T ss_pred             CcEEEEE
Confidence            7777763

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.80  E-value=1.5e-06  Score=95.29  Aligned_cols=220  Identities=13%  Similarity=0.151  Sum_probs=139.3

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      +.++.++..|. .++|++.|....        +|.++++........+       ...-.....++||.     ....+|
T Consensus       348 l~~~~~ld~d~~~~~ly~sD~~~~--------~I~r~~~~g~~~~~v~-------~~~~~~p~GlAvD~-----~~~~lY  407 (619)
T 3s94_A          348 IRHAIAIDYDPVEGYIYWTDDEVR--------AIRRSFIDGSGSQFVV-------TAQIAHPDGIAVDW-----VARNLY  407 (619)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTT--------EEEEEETTSCSCEEEE-------CSSCSCCCEEEEET-----TTTEEE
T ss_pred             cCccEEEEEEcCCCeEEEEeCCCC--------eEEEEEcCCCccEEEE-------ECCCCCcCceEEec-----ccCcEE
Confidence            45566777775 677888887665        6777777654322111       11234567899985     478899


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +||++.+.|-|.+++......+-.                              .......+|+||.     .++++|++
T Consensus       408 ~tD~~~~~I~v~~~~G~~~~~l~~------------------------------~~l~~P~~iavdp-----~~G~ly~t  452 (619)
T 3s94_A          408 WTDTGTDRIEVTRLNGTMRKILIS------------------------------EDLEEPRAIVLDP-----MVGYMYWT  452 (619)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC------------------------------TTCCSEEEEEEET-----TTTEEEEE
T ss_pred             EEeCCCCcEEEEeCCCCeEEEEEE------------------------------CCCCCeeeEEEEc-----CCCcEEEe
Confidence            999999999999997554322211                              1123468899995     35899999


Q ss_pred             cCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeech
Q psy731          285 DSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTK  363 (494)
Q Consensus       285 D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~  363 (494)
                      |.+. +.|...++.....-.+..                ..+.|+   .||||+++    .+.||+.-....++.++.. 
T Consensus       453 D~g~~~~I~r~~~dG~~~~~l~~----------------~~l~~P---~GlalD~~----~~~LY~aD~~~~~I~~~~~-  508 (619)
T 3s94_A          453 DWGEIPKIERAALDGSDRVVLVN----------------TSLGWP---NGLALDYD----EGKIYWGDAKTDKIEVMNT-  508 (619)
T ss_dssp             ECSSSCEEEEEETTSCSCEEEEC----------------SSCSCE---EEEEEETT----TTEEEEEETTTTEEEEEES-
T ss_pred             cCCCCCEEEEEccCCCccEEEEe----------------CCCCCC---eeeEEccc----CCEEEEEECCCCEEEEEec-
Confidence            9875 567777765433221211                123344   46999876    3699997766667776653 


Q ss_pred             hhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEeccc
Q psy731          364 VLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPS  443 (494)
Q Consensus       364 ~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd  443 (494)
                         +.+.        .+.+...+ .....|++++  .+.||+++...++|.+.|..+|      +..+++.+   +.-|-
T Consensus       509 ---dG~~--------~~~~~~~~-l~~P~glav~--~~~ly~tD~~~~~I~~~~k~~g------~~~~~~~~---~~~~~  565 (619)
T 3s94_A          509 ---DGTG--------RRVLVEDK-IPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSA------EREVIIDQ---LPDLM  565 (619)
T ss_dssp             ---SSCC--------CEEEEECC-CCSSCCEEEE--TTEEEEECTTSSCEEEEESSSC------CEEEEECS---CCCEE
T ss_pred             ---CCCc--------eEEEeccC-CCCcEEEEEE--CCEEEEeecCCCeEEEEEcCCC------ceEEEecC---CCCCc
Confidence               2211        11122111 2456799998  4599999999999999998874      33455443   33344


Q ss_pred             ceEE
Q psy731          444 DIRV  447 (494)
Q Consensus       444 ~~~i  447 (494)
                      ++++
T Consensus       566 ~i~~  569 (619)
T 3s94_A          566 GLKA  569 (619)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            5554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.80  E-value=1.1e-06  Score=92.26  Aligned_cols=273  Identities=13%  Similarity=0.074  Sum_probs=155.4

Q ss_pred             Ceeeeeeee----CCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCC
Q psy731           63 CLPVSLDKW----HDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCD  138 (494)
Q Consensus        63 ~~p~gv~v~----~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~  138 (494)
                      .-|.|+++.    +|+||++-..      ..+..+..+.          +.+...-         ..+..+.++.+|..+
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~------~~I~~id~~~----------g~v~~~~---------~~~~~P~giavd~dG  193 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR------DAFRHVDFVN----------QYVDIKT---------TNIGQCADVNFTLNG  193 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT------SCEEEEETTT----------TEEEEEC---------CCCSCEEEEEECTTC
T ss_pred             CCCceEEEccccCCCEEEEEeCC------CCEEEEECCC----------CEEEEee---------cCCCCccEEEECCCC
Confidence            458999996    4999999754      3577776532          2333221         145678999999999


Q ss_pred             eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEc
Q psy731          139 RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNY  218 (494)
Q Consensus       139 ~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~  218 (494)
                      +|||.|.+...    .+..++.++...+.... ..++      .....++++||-     .++++||+|...+.|.+||.
T Consensus       194 ~lyVad~~~~~----~~~gv~~~~~~~~~~~~-~~~~------~~~~P~giavd~-----~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          194 DMVVVDDQSSD----TNTGIYLFTRASGFTER-LSLC------NARGAKTCAVHP-----QNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CEEEEECCSCT----TSEEEEEECGGGTTCCE-EEEE------ECSSBCCCEECT-----TTCCEEECBTTCSEEEEECT
T ss_pred             CEEEEcCCCCc----ccceEEEEECCCCeecc-cccc------ccCCCCEEEEeC-----CCCeEEEEECCCCEEEEEEC
Confidence            99999986521    11236666554332211 1111      234567788863     47899999999999999999


Q ss_pred             cCCce-eEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731          219 RTNDS-HIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR  297 (494)
Q Consensus       219 ~~~~~-~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~  297 (494)
                      .++.. +.+-.                       ..      .......|++|.     +..++||+|...+.|.++++.
T Consensus       258 ~~g~~~~~~~~-----------------------~~------~~~~~~~ia~dp-----dG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          258 ATGTLTEEEVM-----------------------MD------TKGSNFHIVWHP-----TGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             TTCCEEEEEEE-----------------------CS------CCSSCEEEEECT-----TSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCeEEEEEec-----------------------cC------CCCCcccEEEeC-----CCCEEEEEeCCCCEEEEEeCC
Confidence            98877 44410                       00      001123577774     356899999999999998876


Q ss_pred             C--CcE---EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCC----CCCceeEEEeeCCCcceEeeechhhcCC
Q psy731          298 T--NDS---HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLT----RDNFRVMYFHPLASTTEFAVTTKVLQNR  368 (494)
Q Consensus       298 ~--~~s---wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~----~~g~r~LYf~plss~~ly~V~T~~L~~~  368 (494)
                      .  ++.   ..+... +. .+...+-.-....|..+   .|||+.+..    .+....||+.--...++.++..    +.
T Consensus       304 ~~~~~~~~~~~~ag~-~g-~~g~~dg~~~~a~~~~P---~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~----~G  374 (433)
T 4hw6_A          304 RETGKLAVPYIVCGQ-HS-SPGWVDGMGTGARLWGP---NQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP----EG  374 (433)
T ss_dssp             TTTCCBCCCEEEEEC-TT-CCCCBCEEGGGSBCSSE---EEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT----TS
T ss_pred             CCCcccCcEEEEEec-CC-CCccCCCcccceEEcCC---ccEEEEccccccccCCCCcEEEEECCCCEEEEECC----CC
Confidence            3  221   111110 00 00000000000123333   458982100    0013589997766666666642    11


Q ss_pred             CcCc-cccc----cceE--EecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC
Q psy731          369 SLDF-SRSN----FDFK--VMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF  419 (494)
Q Consensus       369 ~~~~-~~~~----~~v~--~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~  419 (494)
                      .+.. ....    .-+.  .++.........|+++|+.+|+||+++...+.|.+++++
T Consensus       375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            1100 0000    0000  000111123467899998899999999999999998865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.78  E-value=5.7e-07  Score=88.64  Aligned_cols=204  Identities=12%  Similarity=0.138  Sum_probs=126.3

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCC-CcEE
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCD-NAFL  203 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~-~~~v  203 (494)
                      +..+.++.+|+ .++|||.|.+.         .|.++|..++++. .+.-..  .-.+..+.+++++|      . ++.+
T Consensus        79 ~~~p~gi~~~~~~g~l~v~d~~~---------~i~~~d~~~g~~~-~~~~~~--~~~~~~~p~~i~~d------~~~G~l  140 (322)
T 2fp8_A           79 CGRTYDISYNLQNNQLYIVDCYY---------HLSVVGSEGGHAT-QLATSV--DGVPFKWLYAVTVD------QRTGIV  140 (322)
T ss_dssp             HCCEEEEEEETTTTEEEEEETTT---------EEEEECTTCEECE-EEESEE--TTEECSCEEEEEEC------TTTCCE
T ss_pred             CCCCceEEEcCCCCcEEEEECCC---------CEEEEeCCCCEEE-EecccC--CCCcccccceEEEe------cCCCEE
Confidence            34688999996 89999999874         4889998876532 221110  01123567889987      4 6789


Q ss_pred             EEeeCCC-----------------CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccccccccccee
Q psy731          204 YIADSGH-----------------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN  266 (494)
Q Consensus       204 YItDs~~-----------------~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~  266 (494)
                      ||+|+..                 ++|++||..+++...+..                               .....+.
T Consensus       141 ~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-------------------------------~~~~p~g  189 (322)
T 2fp8_A          141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-------------------------------ELHVPGG  189 (322)
T ss_dssp             EEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-------------------------------EESCCCE
T ss_pred             EEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-------------------------------CCccCcc
Confidence            9999863                 569999988777654411                               1123466


Q ss_pred             eEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCcee
Q psy731          267 MVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRV  346 (494)
Q Consensus       267 i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~  346 (494)
                      |+++.     ++.++|++|...+.|.+|++.+...              +...+    +.-..|-+||+++++   |  .
T Consensus       190 ia~~~-----dg~~lyv~d~~~~~I~~~~~~~~~~--------------~~~~~----~~~~~gP~gi~~d~~---G--~  241 (322)
T 2fp8_A          190 AEVSA-----DSSFVLVAEFLSHQIVKYWLEGPKK--------------GTAEV----LVKIPNPGNIKRNAD---G--H  241 (322)
T ss_dssp             EEECT-----TSSEEEEEEGGGTEEEEEESSSTTT--------------TCEEE----EEECSSEEEEEECTT---S--C
T ss_pred             eEECC-----CCCEEEEEeCCCCeEEEEECCCCcC--------------Cccce----EEeCCCCCCeEECCC---C--C
Confidence            77773     3568999999989999999886320              11110    000113577999875   3  5


Q ss_pred             EEEeeCC----------CcceEeeechhhcCCCcCccccccceEEeccc-CC-CCCCCeEEeeCCCCeEEEeccCCCeEE
Q psy731          347 MYFHPLA----------STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSR-GT-GSQSGASSLDEETGVIFYALLVKSGVG  414 (494)
Q Consensus       347 LYf~pls----------s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~-G~-~~qs~g~~~D~~~G~ly~~~~~~~aI~  414 (494)
                      ||..-..          ...++++..+    .        +.++.+... |. .....+++.+  .|.||++....+.|.
T Consensus       242 l~va~~~~~~~~~~~~~~~~v~~~d~~----G--------~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~  307 (322)
T 2fp8_A          242 FWVSSSEELDGNMHGRVDPKGIKFDEF----G--------NILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVG  307 (322)
T ss_dssp             EEEEEEEETTSSTTSCEEEEEEEECTT----S--------CEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEE
T ss_pred             EEEEecCcccccccCCCccEEEEECCC----C--------CEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceE
Confidence            8875433          1245555321    1        112223321 21 2334555544  799999999999999


Q ss_pred             EEeCCC
Q psy731          415 CWNTFR  420 (494)
Q Consensus       415 ~w~~~~  420 (494)
                      ++++..
T Consensus       308 ~~~~~~  313 (322)
T 2fp8_A          308 ILVYDK  313 (322)
T ss_dssp             EEEC--
T ss_pred             EEeccc
Confidence            999876

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.73  E-value=4.3e-07  Score=90.79  Aligned_cols=220  Identities=15%  Similarity=0.168  Sum_probs=124.4

Q ss_pred             CCeEEEEeCCCCCCCCCCCCE-EEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC---CCCe
Q psy731          137 CDRLWALDSGVVEGKMEQPPS-VQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS---GHNH  212 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pk-lv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs---~~~~  212 (494)
                      .++|+++|+.+.        + +..+.+....... -..+           ++++||.     +++++||||+   ..++
T Consensus        92 ~~~i~~~d~~tg--------~~~~~~~~~~~~~~~-~~~~-----------~~v~vd~-----~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           92 VPKLVAWDTLNN--------QLSRVIYLPPPITLS-NSFV-----------NDLAVDL-----IHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             CCEEEEEETTTT--------EEEEEEECCTTTSCT-TCCC-----------CEEEEET-----TTTEEEEEECCSGGGCE
T ss_pred             CCeEEEEECCCC--------eEEEEEECChhhccc-cccc-----------ceEEEec-----CCCEEEEEcCccCCCCe
Confidence            479999998765        3 5566765332100 0111           3677764     4679999999   8899


Q ss_pred             EEEEEccCCceeEEe--cCccccCCCCCccccCCccceeee-ecccccc-cccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          213 IVVYNYRTNDSHIIH--HNYLHFDPLFGDFTIGGEYSEFFQ-LKEKTDY-TEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       213 iIVyd~~~~~~~rv~--~~~~~~dp~~~~f~i~g~~~~~f~-l~~~~~~-~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      |+|||+.+++.||+.  |..+.++|  +.|.+.|..   |. .+.+... .-....+.|+++.     +..++|++|...
T Consensus       147 i~v~d~~~g~~~r~~~~~~~~~~~~--~~~~~~g~~---~~~~~~~g~~~~~~~~~~gia~s~-----dg~~ly~~~~~~  216 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYPGIAPED--IDLVIDGVP---VQIGQPDGTVIRPHLGVNGIVLDA-----ENEWLYLSPMHS  216 (343)
T ss_dssp             EEEEETTTCCEEEECTTCTTTSCCS--CCCEETTEE---CBEECTTSCEECCCCCEEEEEECT-----TSCEEEEEESSC
T ss_pred             EEEEECCCCCEEEEecCCCcccccc--cceeECCEE---EEeccCCCceeceecccceeEecc-----CCCEEEEEeCCC
Confidence            999999999999984  33666666  677776642   21 1110100 0012346677763     356788888777


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCC
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNR  368 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~  368 (494)
                      ..|.+++....+     ............+...|.    ....+||+++++     ..||+.-.....++.+..+   +.
T Consensus       217 ~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~g~----~g~pdgia~d~~-----G~l~va~~~~~~V~~~d~~---~G  279 (343)
T 2qe8_A          217 TSMYRIKSADLS-----NLQLTDAELGSKIERYSE----KPICDGISIDKD-----HNIYVGDLAHSAIGVITSA---DR  279 (343)
T ss_dssp             SEEEEEEHHHHT-----CTTCCHHHHHTTCEEEEE----CCSCSCEEECTT-----CCEEEEEGGGTEEEEEETT---TT
T ss_pred             CeEEEEEHHHhc-----CCCCChhhhhcceEeccc----CCCCceEEECCC-----CCEEEEccCCCeEEEEECC---CC
Confidence            666666532100     000000000001111111    113577999875     3799977666677777651   11


Q ss_pred             CcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeC
Q psy731          369 SLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       369 ~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      .         ++.+..........++++| ..|.||++.-..+.+..++.
T Consensus       280 ~---------~~~~~~~~~~~~p~~va~~-~~g~l~v~~~~~~~~~~f~~  319 (343)
T 2qe8_A          280 A---------YKLLVTDEKLSWTDSFNFG-SDGYLYFDCNQLHHSAPLNA  319 (343)
T ss_dssp             E---------EEEEEECGGGSCEEEEEEC-TTSCEEEEECCGGGSGGGBT
T ss_pred             C---------EEEEEECCceecCCeeEEC-CCCcEEEEeCcccccccccc
Confidence            1         1111111012356899999 67999999877666554543

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.67  E-value=1.6e-05  Score=78.74  Aligned_cols=225  Identities=13%  Similarity=0.134  Sum_probs=143.0

Q ss_pred             EeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      +..+...++++ |++......        .|.+||+.++++++.+..+.        ....+++.     .++.++|++.
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~--------~i~v~d~~~~~~~~~~~~~~--------~v~~~~~s-----pdg~~l~~~~   92 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSN--------DVSIIDTATNNVIATVPAGS--------SPQGVAVS-----PDGKQVYVTN   92 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTEEEEEEECSS--------SEEEEEEC-----TTSSEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCC--------eEEEEECCCCeEEEEEECCC--------CccceEEC-----CCCCEEEEEE
Confidence            56778888775 556654444        79999999999998877544        34455553     3577999999


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      +..+.|.|||+.+++..+.-.                               .......+.+..     ++.++|++...
T Consensus        93 ~~~~~v~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~s~-----dg~~l~~~~~~  136 (391)
T 1l0q_A           93 MASSTLSVIDTTSNTVAGTVK-------------------------------TGKSPLGLALSP-----DGKKLYVTNNG  136 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEE-------------------------------CSSSEEEEEECT-----TSSEEEEEETT
T ss_pred             CCCCEEEEEECCCCeEEEEEe-------------------------------CCCCcceEEECC-----CCCEEEEEeCC
Confidence            999999999999987755511                               011233444432     45788888888


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN  367 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~  367 (494)
                      +..|.+||+++++.-+....                    ..++.+++++|+    ++.||+.......++....+-   
T Consensus       137 ~~~v~~~d~~~~~~~~~~~~--------------------~~~~~~~~~~~d----g~~l~~~~~~~~~v~~~d~~~---  189 (391)
T 1l0q_A          137 DKTVSVINTVTKAVINTVSV--------------------GRSPKGIAVTPD----GTKVYVANFDSMSISVIDTVT---  189 (391)
T ss_dssp             TTEEEEEETTTTEEEEEEEC--------------------CSSEEEEEECTT----SSEEEEEETTTTEEEEEETTT---
T ss_pred             CCEEEEEECCCCcEEEEEec--------------------CCCcceEEECCC----CCEEEEEeCCCCEEEEEECCC---
Confidence            88999999998765433211                    123466889886    368887665554555443321   


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEecc--CCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALL--VKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~--~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                      ..        ..+.+...   ....++++++....||.+..  ..+.|..||..++++     ...+...    ..|.++
T Consensus       190 ~~--------~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~-----~~~~~~~----~~~~~~  249 (391)
T 1l0q_A          190 NS--------VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-----TARIPVG----PDPAGI  249 (391)
T ss_dssp             TE--------EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-----EEEEECC----SSEEEE
T ss_pred             Ce--------EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE-----EEEEecC----CCccEE
Confidence            11        11112111   22456788844446777776  689999999987421     2333222    235677


Q ss_pred             EEcCCc-eEEEEe
Q psy731          446 RVDRTG-VLWVLS  457 (494)
Q Consensus       446 ~id~~g-~Lwvls  457 (494)
                      .+.++| .||+..
T Consensus       250 ~~s~dg~~l~~s~  262 (391)
T 1l0q_A          250 AVTPDGKKVYVAL  262 (391)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EEccCCCEEEEEc
Confidence            777777 466664

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.66  E-value=9.5e-06  Score=79.46  Aligned_cols=254  Identities=13%  Similarity=0.155  Sum_probs=144.3

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      .++..+.++++++|++.+....      .-.|.+||+.++++...-.++.     .......++++-     +..++|++
T Consensus        40 ~~p~~~a~spdg~l~~~~~~~~------~~~v~~~~~~~g~~~~~~~~~~-----~~~~p~~~a~sp-----dg~~l~~~  103 (347)
T 3hfq_A           40 QNPTYLALSAKDCLYSVDKEDD------EGGIAAWQIDGQTAHKLNTVVA-----PGTPPAYVAVDE-----ARQLVYSA  103 (347)
T ss_dssp             SCCCCEEECTTCEEEEEEEETT------EEEEEEEEEETTEEEEEEEEEE-----ESCCCSEEEEET-----TTTEEEEE
T ss_pred             CCcceEEEccCCeEEEEEecCC------CceEEEEEecCCcEEEeeeeec-----CCCCCEEEEECC-----CCCEEEEE
Confidence            4456678888999999886311      1168899998776433222222     334556677763     57789999


Q ss_pred             eCCCCeEEEEEcc-CCceeEEecCcc-ccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          207 DSGHNHIVVYNYR-TNDSHIIHHNYL-HFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       207 Ds~~~~iIVyd~~-~~~~~rv~~~~~-~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +...+.+.+||+. +|+...+..... ...|.                    ..........++++.     ++. +|++
T Consensus       104 ~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~--------------------~~~~~~~~~~~~~sp-----dg~-l~v~  157 (347)
T 3hfq_A          104 NYHKGTAEVMKIAADGALTLTDTVQHSGHGPR--------------------PEQDGSHIHYTDLTP-----DNR-LAVI  157 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECCCCCSS--------------------TTCSSCCEEEEEECT-----TSC-EEEE
T ss_pred             eCCCCEEEEEEeCCCCCeeecceeecCCCCCC--------------------ccccCCCceEEEECC-----CCc-EEEE
Confidence            9988999999995 555554421110 00000                    000112234455553     234 8999


Q ss_pred             cCCCCeEEEEEcC-CCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceEeee
Q psy731          285 DSGHNHIVVYNYR-TNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEFAVT  361 (494)
Q Consensus       285 D~~~~gliVydl~-~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly~V~  361 (494)
                      +.....|.+||+. +++.-.+......  +              ..+..++++||+    ++.||+....+.  .+|.+.
T Consensus       158 ~~~~~~v~~~~~~~~g~~~~~~~~~~~--~--------------g~~p~~~~~spd----g~~l~v~~~~~~~v~v~~~~  217 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQLSEQSVLTME--A--------------GFGPRHLVFSPD----GQYAFLAGELSSQIASLKYD  217 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEEECC--T--------------TCCEEEEEECTT----SSEEEEEETTTTEEEEEEEE
T ss_pred             eCCCCEEEEEEECCCCcEEEeeeEEcC--C--------------CCCCceEEECCC----CCEEEEEeCCCCEEEEEEec
Confidence            9989999999998 4432222110000  0              123567999997    368998654443  345444


Q ss_pred             chhhcCCCcCccccccceEEecccC----CCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecC
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRG----TGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN  436 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G----~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~  436 (494)
                      ..   ...+      ..++.+....    ......+++++ .+| .||++....+.|..|+.+.  .   .....+..-+
T Consensus       218 ~~---~g~~------~~~~~~~~~~~~~~~~~~~~~i~~s-pdG~~l~v~~~~~~~v~v~~~~~--~---g~~~~~~~~~  282 (347)
T 3hfq_A          218 TQ---TGAF------TQLGIVKTIPADYTAHNGAAAIRLS-HDGHFLYVSNRGYNTLAVFAVTA--D---GHLTLIQQIS  282 (347)
T ss_dssp             TT---TTEE------EEEEEEESSCTTCCSCCEEEEEEEC-TTSCEEEEEEETTTEEEEEEECG--G---GCEEEEEEEE
T ss_pred             CC---CCce------EEeeeeeecCCCCCCCCcceeEEEC-CCCCEEEEEeCCCCEEEEEEECC--C---CcEEEeEEEe
Confidence            21   0000      0111111110    00224568999 566 5899988899999999762  1   0122332211


Q ss_pred             CeEecccceEEcCCce-EEEEe
Q psy731          437 ATLIYPSDIRVDRTGV-LWVLS  457 (494)
Q Consensus       437 ~~l~~pd~~~id~~g~-Lwvls  457 (494)
                      ..-.+|.++.++++|. ||+..
T Consensus       283 ~~~~~~~~~~~spdg~~l~v~~  304 (347)
T 3hfq_A          283 TEGDFPRDFDLDPTEAFVVVVN  304 (347)
T ss_dssp             CSSSCCCEEEECTTSSEEEEEE
T ss_pred             cCCCCcCeEEECCCCCEEEEEE
Confidence            1124789999999995 77765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.64  E-value=2.6e-06  Score=83.75  Aligned_cols=209  Identities=11%  Similarity=0.055  Sum_probs=124.8

Q ss_pred             ECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccc
Q psy731          162 DLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFT  241 (494)
Q Consensus       162 dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~  241 (494)
                      ++.+.+++.++..+        ++..++++|      .++.+|++|...+.|.+||.+.+....+.              
T Consensus        18 ~~~~~~~~~~~p~~--------~~pegia~~------~~g~lyv~d~~~~~I~~~d~~g~~~~~~~--------------   69 (306)
T 2p4o_A           18 ELAPAKIITSFPVN--------TFLENLASA------PDGTIFVTNHEVGEIVSITPDGNQQIHAT--------------   69 (306)
T ss_dssp             CCCCEEEEEEECTT--------CCEEEEEEC------TTSCEEEEETTTTEEEEECTTCCEEEEEE--------------
T ss_pred             cCCCceEeEeCCCC--------CCcceEEEC------CCCCEEEEeCCCCeEEEECCCCceEEEEe--------------
Confidence            35556677766322        356678886      34569999999999999998764322221              


Q ss_pred             cCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCC--eEEEEEcCCCcEEEEecCCcccCCCCcceE
Q psy731          242 IGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHN--HIVVYNYRTNDSHIIHHNYLHFDPLFGDFT  319 (494)
Q Consensus       242 i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~--gliVydl~~~~swrv~~~~~~~dP~~~~~~  319 (494)
                                        .......|++|.      ++.+|++|....  .|+++|..+++..++...     |. .   
T Consensus        70 ------------------~~~~p~gia~~~------dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-----~~-~---  116 (306)
T 2p4o_A           70 ------------------VEGKVSGLAFTS------NGDLVATGWNADSIPVVSLVKSDGTVETLLTL-----PD-A---  116 (306)
T ss_dssp             ------------------CSSEEEEEEECT------TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----TT-C---
T ss_pred             ------------------CCCCceeEEEcC------CCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-----CC-c---
Confidence                              112356677763      234899997644  488999888875444321     10 0   


Q ss_pred             EcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh----h--cCCCcCccccccceEEecccCCCCCCCe
Q psy731          320 IGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV----L--QNRSLDFSRSNFDFKVMGSRGTGSQSGA  393 (494)
Q Consensus       320 v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~----L--~~~~~~~~~~~~~v~~~G~~G~~~qs~g  393 (494)
                            ..   .+|++..+.     ..+|+.-....++|++....    +  .+..+.      .....+.   .....|
T Consensus       117 ------~~---~~g~~~~~~-----~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~------~~~~~~~---~~~png  173 (306)
T 2p4o_A          117 ------IF---LNGITPLSD-----TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA------RSNSESV---FPAANG  173 (306)
T ss_dssp             ------SC---EEEEEESSS-----SEEEEEETTTTEEEEEETTTTEEEEEEECGGGS------CSSTTCC---SCSEEE
T ss_pred             ------cc---cCcccccCC-----CcEEEEECCCCeEEEEeCCCCcEeEEEECCccc------cccccCC---CCcCCC
Confidence                  01   245665432     36777655444788876531    0  011000      0000011   123455


Q ss_pred             EEeeCCCCeEEEeccCCCeEEEEeCCC-CccccccceeeeeecCCeEecccceEEcCCceEEEEe---cCchhh
Q psy731          394 SSLDEETGVIFYALLVKSGVGCWNTFR-GEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS---NKLPVF  463 (494)
Q Consensus       394 ~~~D~~~G~ly~~~~~~~aI~~w~~~~-~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls---nrl~~~  463 (494)
                      +  ++..+.||+++...+.|.+++.++ | .+  .+.+++.+    +..|++|.+|++|.|||..   +++.++
T Consensus       174 i--s~dg~~lyv~d~~~~~I~~~~~~~~g-~~--~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~  238 (306)
T 2p4o_A          174 L--KRFGNFLYVSNTEKMLLLRIPVDSTD-KP--GEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRI  238 (306)
T ss_dssp             E--EEETTEEEEEETTTTEEEEEEBCTTS-CB--CCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEE
T ss_pred             c--CcCCCEEEEEeCCCCEEEEEEeCCCC-CC--CccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEE
Confidence            5  434579999999999999999874 2 22  12334433    3589999999999999996   555554

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.61  E-value=1.5e-05  Score=76.54  Aligned_cols=246  Identities=9%  Similarity=0.068  Sum_probs=137.8

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECC--CCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLR--QQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~--t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      .+..+.++++++ |++.+.+..        +|..|++.  ++++...-.++.     +. ....++++     .++.++|
T Consensus        39 ~~~~~~~spdg~~l~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~s-----~dg~~l~   99 (343)
T 1ri6_A           39 QVQPMVVSPDKRYLYVGVRPEF--------RVLAYRIAPDDGALTFAAESAL-----PG-SLTHISTD-----HQGQFVF   99 (343)
T ss_dssp             CCCCEEECTTSSEEEEEETTTT--------EEEEEEECTTTCCEEEEEEEEC-----SS-CCSEEEEC-----TTSSEEE
T ss_pred             CCceEEECCCCCEEEEeecCCC--------eEEEEEecCCCCceeecccccc-----CC-CCcEEEEc-----CCCCEEE
Confidence            455577777775 888877643        67777776  666443223322     11 44566664     2577899


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +++...+.|.+||+.++...+...                            ..........++++.     ++.++|++
T Consensus       100 ~~~~~~~~i~~~d~~~~~~~~~~~----------------------------~~~~~~~~~~~~~s~-----dg~~l~~~  146 (343)
T 1ri6_A          100 VGSYNAGNVSVTRLEDGLPVGVVD----------------------------VVEGLDGCHSANISP-----DNRTLWVP  146 (343)
T ss_dssp             EEETTTTEEEEEEEETTEEEEEEE----------------------------EECCCTTBCCCEECT-----TSSEEEEE
T ss_pred             EEecCCCeEEEEECCCCccccccc----------------------------cccCCCCceEEEECC-----CCCEEEEe
Confidence            999988999999997554443311                            001111234455542     35689999


Q ss_pred             cCCCCeEEEEEcCC-CcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeech
Q psy731          285 DSGHNHIVVYNYRT-NDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTK  363 (494)
Q Consensus       285 D~~~~gliVydl~~-~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~  363 (494)
                      +.....|.+||+.+ ++.-.+........+              ..+..+++++|+    ++.||+.......+......
T Consensus       147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~pd----g~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVE--------------GAGPRHMVFHPN----EQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEEEECST--------------TCCEEEEEECTT----SSEEEEEETTTTEEEEEESS
T ss_pred             cCCCCEEEEEEecCCCceeeecccccccCC--------------CCCcceEEECCC----CCEEEEEeCCCCEEEEEEec
Confidence            97888999999987 443222100000000              023557999987    36888876444333333221


Q ss_pred             hhcCCCcCccccccceEEecc--cC--CCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC--CCccccccceeeeeecCC
Q psy731          364 VLQNRSLDFSRSNFDFKVMGS--RG--TGSQSGASSLDEETGVIFYALLVKSGVGCWNTF--RGEEYNEKSMGLVAEDNA  437 (494)
Q Consensus       364 ~L~~~~~~~~~~~~~v~~~G~--~G--~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~--~~~~~~~~~~~~v~~d~~  437 (494)
                      . ....+      ...+....  .+  ......++++++....||++.-..+.|..|+.+  ++      ....+..-+.
T Consensus       209 ~-~~g~~------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~------~~~~~~~~~~  275 (343)
T 1ri6_A          209 D-PHGNI------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS------VLSKEGFQPT  275 (343)
T ss_dssp             C-TTSCC------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC------CEEEEEEEEC
T ss_pred             C-CCCcE------EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC------ceEEeeeecC
Confidence            0 00110      00111111  00  012233689994334788888888999999987  31      1222221111


Q ss_pred             eEecccceEEcCCce-EEEEe
Q psy731          438 TLIYPSDIRVDRTGV-LWVLS  457 (494)
Q Consensus       438 ~l~~pd~~~id~~g~-Lwvls  457 (494)
                      . ..|.++.++++|. ||+..
T Consensus       276 ~-~~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          276 E-TQPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             S-SSCCCEEECTTSSEEEEEC
T ss_pred             C-CccceEEECCCCCEEEEec
Confidence            1 2388999999885 66665

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=2e-06  Score=89.93  Aligned_cols=193  Identities=9%  Similarity=0.076  Sum_probs=122.0

Q ss_pred             ccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccce
Q psy731          186 FSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFS  265 (494)
Q Consensus       186 l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~  265 (494)
                      ...+++|-    ..++++|++|.. +.|.++|++++....+.                               .......
T Consensus       139 P~~lavdp----~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~-------------------------------~~~~~P~  182 (430)
T 3tc9_A          139 AVWLSFDP----KNHNHLYLVGEQ-HPTRLIDFEKEYVSTVY-------------------------------SGLSKVR  182 (430)
T ss_dssp             CCEEEEET----TEEEEEEEEEBT-EEEEEEETTTTEEEEEE-------------------------------CCCSCEE
T ss_pred             CCEEEECC----CCCCeEEEEeCC-CcEEEEECCCCEEEEEe-------------------------------cCCCCcc
Confidence            35666761    025789999998 88999999988776652                               1233467


Q ss_pred             eeEEeeecCCCCCcEEEEecCCC----CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731          266 NMVVDVTSANCDDAFLYIADSGH----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR  341 (494)
Q Consensus       266 ~i~VD~~~~~c~~~~~YI~D~~~----~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~  341 (494)
                      .|++|.     ++.++|++|...    ..+++++....-.++                   ..+.-..+..||+++|+  
T Consensus       183 ~ia~d~-----~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~-------------------~~l~~~~~p~giavdp~--  236 (430)
T 3tc9_A          183 TICWTH-----EADSMIITNDQNNNDRPNNYILTRESGFKVI-------------------TELTKGQNCNGAETHPI--  236 (430)
T ss_dssp             EEEECT-----TSSEEEEEECCSCTTSEEEEEEEGGGTSCSE-------------------EEEEECSSCCCEEECTT--
T ss_pred             eEEEeC-----CCCEEEEEeCCCCcccceEEEEeCCCceeee-------------------eeeccCCCceEEEEeCC--
Confidence            788884     356899999743    245556543321100                   00111134567999885  


Q ss_pred             CCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeCCC
Q psy731          342 DNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       342 ~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~~~  420 (494)
                        ...||+.-+...+++++..+--            .+..+...+......|+++| .+|+ ||+++...+.|.+++.++
T Consensus       237 --~g~lyv~d~~~~~V~~~~~~~~------------~~~~~~~~~~~~~P~gia~~-pdG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          237 --NGELYFNSWNAGQVFRYDFTTQ------------ETTPLFTIQDSGWEFHIQFH-PSGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             --TCCEEEEETTTTEEEEEETTTT------------EEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             --CCEEEEEECCCCEEEEEECCCC------------cEEEEEEcCCCCcceeEEEc-CCCCEEEEEECCCCEEEEEeCCc
Confidence              2489999888888888875410            01111222112345789999 6776 999999999999998764


Q ss_pred             C-ccccccceeeeeec------------CCeEeccc-ceEE--------cCCceEEEEe
Q psy731          421 G-EEYNEKSMGLVAED------------NATLIYPS-DIRV--------DRTGVLWVLS  457 (494)
Q Consensus       421 ~-~~~~~~~~~~v~~d------------~~~l~~pd-~~~i--------d~~g~Lwvls  457 (494)
                      . ..+.  +..+++..            ..+|..|. ++.+        |.+|.|||.-
T Consensus       302 ~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD  358 (430)
T 3tc9_A          302 KTKRLT--TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCD  358 (430)
T ss_dssp             TTTEEC--CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEE
T ss_pred             cccccc--ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEE
Confidence            1 0221  12233321            24688999 8998        4679999995

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.60  E-value=7.2e-06  Score=80.74  Aligned_cols=160  Identities=14%  Similarity=0.196  Sum_probs=94.0

Q ss_pred             EEEEecCCCCeEEEEEcCCCcE-EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ce
Q psy731          280 FLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TE  357 (494)
Q Consensus       280 ~~YI~D~~~~gliVydl~~~~s-wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~l  357 (494)
                      ..+|++...+.|.+|++..+.. |.+....+..-           ...-..|.-|||.+|.    ..+||...=.+. .+
T Consensus        82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-----------~~~~N~g~EGLA~d~~----~~~L~va~E~~p~~i  146 (255)
T 3qqz_A           82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-----------ESPTNCGFEGLAYSRQ----DHTFWFFKEKNPIEV  146 (255)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-----------SCCCSSCCEEEEEETT----TTEEEEEEESSSEEE
T ss_pred             EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-----------cccccCCcceEEEeCC----CCEEEEEECcCCceE
Confidence            4556666666777776655442 33322211100           0011356789999986    358999776655 88


Q ss_pred             EeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec--
Q psy731          358 FAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED--  435 (494)
Q Consensus       358 y~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d--  435 (494)
                      |.+.. .+....+...   ..-...+.. ......|+++||.+|.||+-.-+.+.+...|.++  ..  ...-.|-..  
T Consensus       147 ~~~~g-~~~~~~l~i~---~~~~~~~~~-~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g--~~--~~~~~L~~g~~  217 (255)
T 3qqz_A          147 YKVNG-LLSSNELHIS---KDKALQRQF-TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG--EV--IGEMSLTKGSR  217 (255)
T ss_dssp             EEEES-TTCSSCCEEE---ECHHHHHTC-CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTC--CE--EEEEECSTTGG
T ss_pred             EEEcc-cccCCceeee---cchhhcccc-ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC--CE--EEEEEcCCccC
Confidence            98872 3322222100   000000111 0123579999999999999999999999999987  32  122222211  


Q ss_pred             --CCeEecccceEEcCCceEEEEe--cCchhh
Q psy731          436 --NATLIYPSDIRVDRTGVLWVLS--NKLPVF  463 (494)
Q Consensus       436 --~~~l~~pd~~~id~~g~Lwvls--nrl~~~  463 (494)
                        ..++.=|-||++|++|+|||.+  |.|-+|
T Consensus       218 ~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f  249 (255)
T 3qqz_A          218 GLSHNIKQAEGVAMDASGNIYIVSEPNRFYRF  249 (255)
T ss_dssp             GCSSCCCSEEEEEECTTCCEEEEETTTEEEEE
T ss_pred             CcccccCCCCeeEECCCCCEEEEcCCceEEEE
Confidence              0234568999999999999997  555444

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.59  E-value=7.4e-06  Score=78.56  Aligned_cols=260  Identities=12%  Similarity=0.031  Sum_probs=150.4

Q ss_pred             Ceeeeeee-eCCcEEEEecCCC-CC-CCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCC-C
Q psy731           63 CLPVSLDK-WHDRLFLAVPRHK-NG-VPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPC-D  138 (494)
Q Consensus        63 ~~p~gv~v-~~gRlFvt~PR~~-~g-vp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~-~  138 (494)
                      ..|.++.+ .+|+++++.|.-. .+ ...+|..+..+          ++.++.+..-..    ......+.++.+|.+ +
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~----------~g~~~~~~~~~~----~~~~~~~~~i~~~~~~g   83 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK----------TGKKTVICKPEV----NGYGGIPAGCQCDRDAN   83 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT----------TCCEEEEECCEE----TTEECCEEEEEECSSSS
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC----------CCcEEEEEeccc----CCCCCCCceEEEecCCC
Confidence            35678877 4789999854310 01 11245555432          233433321000    001245788999998 9


Q ss_pred             eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEE-EEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCC-------
Q psy731          139 RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRF-FQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH-------  210 (494)
Q Consensus       139 ~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~-~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~-------  210 (494)
                      +|||.+.+.         .|.+||.. +++.+. ...+.   ..+....+++++|      .++.+|+++...       
T Consensus        84 ~l~v~~~~~---------~l~~~d~~-g~~~~~~~~~~~---~~~~~~~~~i~~d------~~g~l~v~~~~~~~~~~~~  144 (314)
T 1pjx_A           84 QLFVADMRL---------GLLVVQTD-GTFEEIAKKDSE---GRRMQGCNDCAFD------YEGNLWITAPAGEVAPADY  144 (314)
T ss_dssp             EEEEEETTT---------EEEEEETT-SCEEECCSBCTT---SCBCBCCCEEEEC------TTSCEEEEECBCBCTTSCC
T ss_pred             cEEEEECCC---------CEEEEeCC-CCEEEEEeccCC---CccccCCcCEEEC------CCCCEEEEecCcccccccc
Confidence            999999753         58999998 776542 22111   1234567888887      456899999875       


Q ss_pred             --------CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          211 --------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       211 --------~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                              .+|.+||.+ ++..++..                               .....+.++++.. .+-++.++|
T Consensus       145 ~~~~~~~~~~l~~~~~~-g~~~~~~~-------------------------------~~~~~~~i~~~~~-~d~dg~~l~  191 (314)
T 1pjx_A          145 TRSMQEKFGSIYCFTTD-GQMIQVDT-------------------------------AFQFPNGIAVRHM-NDGRPYQLI  191 (314)
T ss_dssp             CBTTSSSCEEEEEECTT-SCEEEEEE-------------------------------EESSEEEEEEEEC-TTSCEEEEE
T ss_pred             cccccCCCCeEEEECCC-CCEEEecc-------------------------------CCCCcceEEEecc-cCCCCCEEE
Confidence                    678888876 66544411                               0112355666621 011345899


Q ss_pred             EecCCCCeEEEEEcC-CCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeee
Q psy731          283 IADSGHNHIVVYNYR-TNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVT  361 (494)
Q Consensus       283 I~D~~~~gliVydl~-~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~  361 (494)
                      ++|...++|.+||++ +++. .-.. .+..        +.+..+   ....+|+++++   |  .||+....+..++.+.
T Consensus       192 v~~~~~~~i~~~~~~~~g~~-~~~~-~~~~--------~~~~~~---~~p~~i~~d~~---G--~l~v~~~~~~~i~~~d  253 (314)
T 1pjx_A          192 VAETPTKKLWSYDIKGPAKI-ENKK-VWGH--------IPGTHE---GGADGMDFDED---N--NLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEETTTTEEEEEEEEETTEE-EEEE-EEEE--------CCCCSS---CEEEEEEEBTT---C--CEEEEEETTTEEEEEC
T ss_pred             EEECCCCeEEEEECCCCCcc-ccce-EEEE--------CCCCCC---CCCCceEECCC---C--CEEEEEcCCCEEEEEc
Confidence            999988999999987 3321 1000 0000        000000   22567999875   3  7888765555676664


Q ss_pred             chhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeCCC
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~~~  420 (494)
                      .+   ...        .++.+...  .....++++| .+|. ||++....+.|.+|+++.
T Consensus       254 ~~---~g~--------~~~~~~~~--~~~~~~i~~~-~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          254 PD---GGQ--------PKMRIRCP--FEKPSNLHFK-PQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TT---CBS--------CSEEEECS--SSCEEEEEEC-TTSSEEEEEETTTTEEEEEECSS
T ss_pred             CC---CCc--------EeEEEeCC--CCCceeEEEC-CCCCEEEEEeCCCCeEEEEeCCC
Confidence            32   011        11112211  1345688898 6776 999999889999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=98.51  E-value=5.8e-05  Score=76.86  Aligned_cols=298  Identities=9%  Similarity=0.021  Sum_probs=152.3

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ++|....+|.++++++|||.|.. .        +|.++| .+++ .....+|  +.......+.+++++-  .-..++++
T Consensus        26 ~~l~~P~~ia~~pdG~l~V~e~~-g--------~I~~~d-~~G~-~~~~~~~--v~~~g~~g~~gia~~p--df~~~g~l   90 (354)
T 3a9g_A           26 SDLEVPWSIAPLGGGRYLVTERP-G--------RLVLIS-PSGK-KLVASFD--VANVGEAGLLGLALHP--EFPKKSWV   90 (354)
T ss_dssp             CSCSCEEEEEEEETTEEEEEETT-T--------EEEEEC-SSCE-EEEEECC--CCCSTTCSEEEEEECT--TTTTSCEE
T ss_pred             CCCCCCeEEEEcCCCeEEEEeCC-C--------EEEEEe-CCCc-eEeeccc--eeecCCCceeeEEeCC--CCCcCCEE
Confidence            46888999999999999999987 3        788887 4555 2222344  1233456788888863  11236899


Q ss_pred             EEeeCC---C----CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeee-ecccccccccccceeeEEeeecCC
Q psy731          204 YIADSG---H----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQ-LKEKTDYTEESKFSNMVVDVTSAN  275 (494)
Q Consensus       204 YItDs~---~----~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~-l~~~~~~~~~s~~~~i~VD~~~~~  275 (494)
                      ||+++.   .    ..|..|+++.+.. +++.                 ...+++ ++    .........|+++.    
T Consensus        91 yv~~~~~~~~~~~~~~v~r~~~~~~~~-~~~~-----------------~~~l~~~~~----~~~~h~~~~l~~~p----  144 (354)
T 3a9g_A           91 YLYASYFAEGGHIRNRVIRGRLDGSTF-KLKE-----------------VKTLIDGIP----GAYIHNGGRIRFGP----  144 (354)
T ss_dssp             EEEEEEECGGGCEEEEEEEEEECSSSC-CEEE-----------------EEEEEEEEE----CCSSCCCCCEEECT----
T ss_pred             EEEEeccCCCCCcceEEEEEEECCCCc-CcCc-----------------cEEEEEcCC----CCCCcCCceEEECC----
Confidence            999874   3    5788888765521 0000                 000111 10    00112345677763    


Q ss_pred             CCCcEEEEecCCCCeE-EEEE--cCCCcEEEEecCCcccCCCCcceEEcCEEeee-ecceeeeeeccCCCCCceeEEEee
Q psy731          276 CDDAFLYIADSGHNHI-VVYN--YRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQW-QTGIHGMSLSPLTRDNFRVMYFHP  351 (494)
Q Consensus       276 c~~~~~YI~D~~~~gl-iVyd--l~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~-~~Gi~gIaLsp~~~~g~r~LYf~p  351 (494)
                        ++.+||++-..... ...|  ...++.+|+.-..--|  ....| ...+-+.+ .-...||+++|+    ...||++-
T Consensus       145 --DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p--~~npf-~~~~i~a~G~rnp~Gla~d~~----~g~l~v~d  215 (354)
T 3a9g_A          145 --DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPP--ADNPF-PNSPIWSYGHRNPQGIDWHRA----SGVMVATE  215 (354)
T ss_dssp             --TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCC--TTSSS-TTCCEEEECCSCCCEEEECTT----TCCEEEEE
T ss_pred             --CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCC--CCCCC-CCCcEEEEccCCcceEEEeCC----CCCEEEEe
Confidence              45799986321100 0000  0123445554221111  00000 00111110 123568999884    24788865


Q ss_pred             CCCcc---eEeeechh-hc----CCCcCccccccceEEecccCCCCCCCeEEe-------eCCCCeEEEeccCCCeEEEE
Q psy731          352 LASTT---EFAVTTKV-LQ----NRSLDFSRSNFDFKVMGSRGTGSQSGASSL-------DEETGVIFYALLVKSGVGCW  416 (494)
Q Consensus       352 lss~~---ly~V~T~~-L~----~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~-------D~~~G~ly~~~~~~~aI~~w  416 (494)
                      .....   +..|..-. .-    ............+..++..  .....|+++       + -.|.||+++...+.|.+.
T Consensus       216 ~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~--~~ap~G~~~y~g~~fp~-~~G~l~v~~~~~~~v~~~  292 (354)
T 3a9g_A          216 HGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSE--TWAPSGASFVHGDMFPG-LRGWLLIACLRGSMLAAV  292 (354)
T ss_dssp             CCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC--CCCEEEEEECCSSSCGG-GTTEEEEEETTTTEEEEE
T ss_pred             cCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCC--CcCCcceEEECCCCCcc-cCCcEEEEEcCCCEEEEE
Confidence            54432   33332100 00    0000000011122233221  234677888       5 689999999999999999


Q ss_pred             eCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEecCchhhhcCCCCCCcccEEEEEEec
Q psy731          417 NTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTV  482 (494)
Q Consensus       417 ~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~  482 (494)
                      +.++.-..  ...+.+..+  ...-|.++.+++||.|||+++.-.    +.-......=||||+..
T Consensus       293 ~~~~~g~~--~~~~~~~~~--~~~rp~~v~~~pDG~lyv~~~~~~----G~g~~~~~~g~i~ri~~  350 (354)
T 3a9g_A          293 NFGDNMEV--RKISTFFKN--VFGRLRDVVIDDDGGILISTSNRD----GRGSLRAGDDKILKIVS  350 (354)
T ss_dssp             EECGGGCE--EEEEEECTT--TSCCEEEEEECTTSCEEEEECTTS----SSSCCCTTCSCEEEEEE
T ss_pred             EECCCCcc--cceeeeccC--CCCCeeEEEECCCCcEEEEEeCCC----CCcCCCCCCCEEEEEec
Confidence            98751011  011223322  123488999999999999985321    11112223347888764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=98.51  E-value=4.3e-05  Score=75.54  Aligned_cols=214  Identities=15%  Similarity=0.202  Sum_probs=135.7

Q ss_pred             eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEc
Q psy731          139 RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNY  218 (494)
Q Consensus       139 ~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~  218 (494)
                      .|++......        .|.+||+.++++++.+....        ....+.+.     .++.++|++.+..+.|.+||+
T Consensus         3 ~l~vs~~~d~--------~v~v~d~~~~~~~~~~~~~~--------~~~~~~~s-----~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            3 FAYIANSESD--------NISVIDVTSNKVTATIPVGS--------NPMGAVIS-----PDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEETTTT--------EEEEEETTTTEEEEEEECSS--------SEEEEEEC-----TTSSEEEEEEGGGTEEEEEET
T ss_pred             EEEEEcCCCC--------EEEEEECCCCeEEEEeecCC--------CcceEEEC-----CCCCEEEEECCCCCeEEEEEC
Confidence            4566665554        79999999999988776544        23444443     356789999998899999999


Q ss_pred             cCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731          219 RTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR  297 (494)
Q Consensus       219 ~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~  297 (494)
                      .+++..+. .+                                ......+++..     ++.++|++......|.+||++
T Consensus        62 ~~~~~~~~~~~--------------------------------~~~v~~~~~sp-----dg~~l~~~~~~~~~v~v~d~~  104 (391)
T 1l0q_A           62 ATNNVIATVPA--------------------------------GSSPQGVAVSP-----DGKQVYVTNMASSTLSVIDTT  104 (391)
T ss_dssp             TTTEEEEEEEC--------------------------------SSSEEEEEECT-----TSSEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEEEC--------------------------------CCCccceEECC-----CCCEEEEEECCCCEEEEEECC
Confidence            98876554 11                                11234455542     467889998888899999999


Q ss_pred             CCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCcccccc
Q psy731          298 TNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNF  377 (494)
Q Consensus       298 ~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~  377 (494)
                      +++..+....                    ..++.+++++|+    ++.||+..-....++....+-   ..     .  
T Consensus       105 ~~~~~~~~~~--------------------~~~~~~~~~s~d----g~~l~~~~~~~~~v~~~d~~~---~~-----~--  150 (391)
T 1l0q_A          105 SNTVAGTVKT--------------------GKSPLGLALSPD----GKKLYVTNNGDKTVSVINTVT---KA-----V--  150 (391)
T ss_dssp             TTEEEEEEEC--------------------SSSEEEEEECTT----SSEEEEEETTTTEEEEEETTT---TE-----E--
T ss_pred             CCeEEEEEeC--------------------CCCcceEEECCC----CCEEEEEeCCCCEEEEEECCC---Cc-----E--
Confidence            8875443321                    123567999987    368888765555555554321   11     1  


Q ss_pred             ceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCc-eEEEE
Q psy731          378 DFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTG-VLWVL  456 (494)
Q Consensus       378 ~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g-~Lwvl  456 (494)
                       +..+. .+  ....++++++....||++.-..+.|..||..+++.     ...+...    ..+.++.+.++| .||+.
T Consensus       151 -~~~~~-~~--~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-----~~~~~~~----~~~~~~~~~~~g~~l~~~  217 (391)
T 1l0q_A          151 -INTVS-VG--RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV-----IDTVKVE----AAPSGIAVNPEGTKAYVT  217 (391)
T ss_dssp             -EEEEE-CC--SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-----EEEEECS----SEEEEEEECTTSSEEEEE
T ss_pred             -EEEEe-cC--CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeE-----EEEEecC----CCccceEECCCCCEEEEE
Confidence             11111 11  12357888854447888888889999999987421     1222221    245667777766 46665


Q ss_pred             e
Q psy731          457 S  457 (494)
Q Consensus       457 s  457 (494)
                      +
T Consensus       218 ~  218 (391)
T 1l0q_A          218 N  218 (391)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.49  E-value=6.6e-05  Score=75.29  Aligned_cols=225  Identities=13%  Similarity=0.099  Sum_probs=139.9

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+....++++|+......        .|.+||+++++.++++...       ......+.++-     ++.++|+++
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~--------~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~l~~~~  230 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQAN--------AVHVFDLKTLAYKATVDLT-------GKWSKILLYDP-----IRDLVYCSN  230 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGT--------EEEEEETTTCCEEEEEECS-------SSSEEEEEEET-----TTTEEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCC--------EEEEEECCCceEEEEEcCC-------CCCeeEEEEcC-----CCCEEEEEe
Confidence            566677778888888876554        7999999999998877632       23445566542     577899999


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC-
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS-  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~-  286 (494)
                      ...+.|.+||+.+++..+.-                               ........+.++.     ++.++|++.. 
T Consensus       231 ~~~~~i~~~d~~~~~~~~~~-------------------------------~~~~~~~~~~~~~-----~g~~l~~~~~~  274 (433)
T 3bws_A          231 WISEDISVIDRKTKLEIRKT-------------------------------DKIGLPRGLLLSK-----DGKELYIAQFS  274 (433)
T ss_dssp             TTTTEEEEEETTTTEEEEEC-------------------------------CCCSEEEEEEECT-----TSSEEEEEEEE
T ss_pred             cCCCcEEEEECCCCcEEEEe-------------------------------cCCCCceEEEEcC-----CCCEEEEEECC
Confidence            98999999999988764331                               0111233444442     3457777664 


Q ss_pred             ------CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEee
Q psy731          287 ------GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAV  360 (494)
Q Consensus       287 ------~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V  360 (494)
                            .+..|.+||+.+++..+...                    ...++.+++++|+    ++.||+..-....++..
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~----g~~l~~~~~~~~~v~v~  330 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTIG--------------------PPGNKRHIVSGNT----ENKIYVSDMCCSKIEVY  330 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEEE--------------------EEECEEEEEECSS----TTEEEEEETTTTEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeecc--------------------CCCCcceEEECCC----CCEEEEEecCCCEEEEE
Confidence                  34578899998775433220                    1123567899886    36788875544455444


Q ss_pred             echhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCC--------------eEEEEeCCCCcccc
Q psy731          361 TTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKS--------------GVGCWNTFRGEEYN  425 (494)
Q Consensus       361 ~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~--------------aI~~w~~~~~~~~~  425 (494)
                      ..+   ...        .++.+...   ....+++++ .+| .||.+....+              .|..||..+++.  
T Consensus       331 d~~---~~~--------~~~~~~~~---~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~--  393 (433)
T 3bws_A          331 DLK---EKK--------VQKSIPVF---DKPNTIALS-PDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV--  393 (433)
T ss_dssp             ETT---TTE--------EEEEEECS---SSEEEEEEC-TTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE--
T ss_pred             ECC---CCc--------EEEEecCC---CCCCeEEEc-CCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE--
Confidence            332   111        11122211   234578898 455 6888776643              899999977421  


Q ss_pred             ccceeeeeecCCeEecccceEEcCCce-EEEE
Q psy731          426 EKSMGLVAEDNATLIYPSDIRVDRTGV-LWVL  456 (494)
Q Consensus       426 ~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvl  456 (494)
                         ...+...    ..|.++.+.++|. |++.
T Consensus       394 ---~~~~~~~----~~~~~~~~s~dg~~l~~~  418 (433)
T 3bws_A          394 ---KEFWEAG----NQPTGLDVSPDNRYLVIS  418 (433)
T ss_dssp             ---EEEEECS----SSEEEEEECTTSCEEEEE
T ss_pred             ---EEEecCC----CCCceEEEcCCCCEEEEE
Confidence               1222221    3578889988885 4444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.46  E-value=1.2e-05  Score=78.27  Aligned_cols=190  Identities=11%  Similarity=0.154  Sum_probs=118.4

Q ss_pred             CccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccc
Q psy731          185 KFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKF  264 (494)
Q Consensus       185 ~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~  264 (494)
                      +...++.|-     +++.+|++|...+.|.+||.+++....+..                                ....
T Consensus        14 ~~Egp~w~~-----~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------~~~~   56 (297)
T 3g4e_A           14 CGESPVWEE-----VSNSLLFVDIPAKKVCRWDSFTKQVQRVTM--------------------------------DAPV   56 (297)
T ss_dssp             BEEEEEEET-----TTTEEEEEETTTTEEEEEETTTCCEEEEEC--------------------------------SSCE
T ss_pred             cccCCeEEC-----CCCEEEEEECCCCEEEEEECCCCcEEEEeC--------------------------------CCce
Confidence            334555542     568899999999999999999887654421                                1123


Q ss_pred             eeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCc
Q psy731          265 SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNF  344 (494)
Q Consensus       265 ~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~  344 (494)
                      ..++++.     ++. +|++.  ..+|.+||.++++.-.+....  .++          +   ...++.|+++|+   | 
T Consensus        57 ~~i~~~~-----dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~--~~~----------~---~~~~~di~~d~d---G-  109 (297)
T 3g4e_A           57 SSVALRQ-----SGG-YVATI--GTKFCALNWKEQSAVVLATVD--NDK----------K---NNRFNDGKVDPA---G-  109 (297)
T ss_dssp             EEEEEBT-----TSS-EEEEE--TTEEEEEETTTTEEEEEEECC--TTC----------S---SEEEEEEEECTT---S-
T ss_pred             EEEEECC-----CCC-EEEEE--CCeEEEEECCCCcEEEEEecC--CCC----------C---CCCCCCEEECCC---C-
Confidence            4566653     223 67775  579999999988755543321  000          0   012567899876   3 


Q ss_pred             eeEEEeeCCC-----------cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeE
Q psy731          345 RVMYFHPLAS-----------TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGV  413 (494)
Q Consensus       345 r~LYf~plss-----------~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI  413 (494)
                       .||+..+..           ..+|++...    ...        .......   ..+.|+++++....||+++...+.|
T Consensus       110 -~l~~~~~~~~~~~~~~~~~~~~l~~~d~~----g~~--------~~~~~~~---~~pngi~~spdg~~lyv~~~~~~~i  173 (297)
T 3g4e_A          110 -RYFAGTMAEETAPAVLERHQGALYSLFPD----HHV--------KKYFDQV---DISNGLDWSLDHKIFYYIDSLSYSV  173 (297)
T ss_dssp             -CEEEEEEECCSBTTBCCTTCEEEEEECTT----SCE--------EEEEEEE---SBEEEEEECTTSCEEEEEEGGGTEE
T ss_pred             -CEEEecCCcccccccccCCCcEEEEEECC----CCE--------EEEeecc---ccccceEEcCCCCEEEEecCCCCcE
Confidence             488876532           367777542    110        0111111   2356899994444799999999999


Q ss_pred             EEEeC--CCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          414 GCWNT--FRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       414 ~~w~~--~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      .+|+.  .+| .+  .+.++++.-......|+++.+|++|.|||..
T Consensus       174 ~~~~~d~~~G-~~--~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~  216 (297)
T 3g4e_A          174 DAFDYDLQTG-QI--SNRRSVYKLEKEEQIPDGMCIDAEGKLWVAC  216 (297)
T ss_dssp             EEEEECTTTC-CE--EEEEEEEECCGGGCEEEEEEEBTTSCEEEEE
T ss_pred             EEEeccCCCC-cc--cCcEEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            99985  333 22  1223443322223579999999999999996

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=98.46  E-value=1.4e-05  Score=77.67  Aligned_cols=193  Identities=12%  Similarity=0.099  Sum_probs=119.1

Q ss_pred             CccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccc
Q psy731          185 KFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKF  264 (494)
Q Consensus       185 ~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~  264 (494)
                      .+..+++|      .++.+|++|...++|.+||.++++..++..                              ......
T Consensus        46 ~~~~~~~~------~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~------------------------------~~~~~~   89 (333)
T 2dg1_A           46 QLEGLNFD------RQGQLFLLDVFEGNIFKINPETKEIKRPFV------------------------------SHKANP   89 (333)
T ss_dssp             CEEEEEEC------TTSCEEEEETTTCEEEEECTTTCCEEEEEE------------------------------CSSSSE
T ss_pred             cccCcEEC------CCCCEEEEECCCCEEEEEeCCCCcEEEEee------------------------------CCCCCc
Confidence            44556665      345599999999999999999998776621                              011234


Q ss_pred             eeeEEeeecCCCCCcEEEEecCCC----CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCC
Q psy731          265 SNMVVDVTSANCDDAFLYIADSGH----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLT  340 (494)
Q Consensus       265 ~~i~VD~~~~~c~~~~~YI~D~~~----~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~  340 (494)
                      ..+++|.      ++.+|+++...    .+|.+||.++++..++....   .+              ...+.+|+++|+ 
T Consensus        90 ~~i~~~~------dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~--------------~~~~~~i~~d~~-  145 (333)
T 2dg1_A           90 AAIKIHK------DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL---ST--------------AYCIDDMVFDSK-  145 (333)
T ss_dssp             EEEEECT------TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS---SS--------------CCCEEEEEECTT-
T ss_pred             ceEEECC------CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC---cc--------------CCcccceEECCC-
Confidence            5566662      34578887766    78999999988765443211   01              023667999875 


Q ss_pred             CCCceeEEEeeCC------CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeE
Q psy731          341 RDNFRVMYFHPLA------STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGV  413 (494)
Q Consensus       341 ~~g~r~LYf~pls------s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI  413 (494)
                        |  .+|+....      ...+|++..+-            ..++.+...  .....+++++ .+| .||+++...+.|
T Consensus       146 --g--~l~v~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~--~~~~~~i~~~-~dg~~l~v~~~~~~~i  206 (333)
T 2dg1_A          146 --G--GFYFTDFRGYSTNPLGGVYYVSPDF------------RTVTPIIQN--ISVANGIALS-TDEKVLWVTETTANRL  206 (333)
T ss_dssp             --S--CEEEEECCCBTTBCCEEEEEECTTS------------CCEEEEEEE--ESSEEEEEEC-TTSSEEEEEEGGGTEE
T ss_pred             --C--CEEEEeccccccCCCceEEEEeCCC------------CEEEEeecC--CCcccceEEC-CCCCEEEEEeCCCCeE
Confidence              2  68887654      24677775320            011111111  1235678999 566 599999888999


Q ss_pred             EEEeCCC-CccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          414 GCWNTFR-GEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       414 ~~w~~~~-~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      .+|+.++ |..+....-.+...- .....|+++.+|++|.|||.+
T Consensus       207 ~~~d~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~  250 (333)
T 2dg1_A          207 HRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAM  250 (333)
T ss_dssp             EEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEE
T ss_pred             EEEEecCCCcCcccccceEEEec-CCCCCCCceEECCCCCEEEEE
Confidence            9999853 111110000111111 112478999999999999997

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.43  E-value=6.8e-05  Score=76.02  Aligned_cols=276  Identities=9%  Similarity=0.048  Sum_probs=142.7

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ++|....++.++++++|||.|.. .        +|.+++  +++......++  +.......+..++++-  .--.++++
T Consensus        28 ~~l~~P~~ia~~pdG~l~V~e~~-g--------~I~~i~--~g~~~~~~~~~--v~~~g~~~p~gia~~p--df~~~g~l   92 (352)
T 2ism_A           28 GGLEVPWALAFLPDGGMLIAERP-G--------RIRLFR--EGRLSTYAELS--VYHRGESGLLGLALHP--RFPQEPYV   92 (352)
T ss_dssp             CCCSCEEEEEECTTSCEEEEETT-T--------EEEEEE--TTEEEEEEECC--CCCSTTCSEEEEEECT--TTTTSCEE
T ss_pred             CCCCCceEEEEcCCCeEEEEeCC-C--------eEEEEE--CCCccEeecce--EeecCCCCceeEEECC--CCCCCCEE
Confidence            45778889999999999999986 3        788888  44433223344  2334567788888862  11125799


Q ss_pred             EEeeCCC-----CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeee-ecccccccccccceeeEEeeecCCCC
Q psy731          204 YIADSGH-----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQ-LKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       204 YItDs~~-----~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~-l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      ||+++..     ..|..|+++.++.-..                    ..+++ ++.  ..........|+++.      
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~--------------------~~l~~~~p~--~~~~~h~~~~l~~~p------  144 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLD--------------------RVVLDGIPA--RPHGLHSGGRIAFGP------  144 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEE--------------------EEEEEEECC--CTTCCCCCCCEEECT------
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCce--------------------EEEEEeCCC--CCCCCcCCceEEECC------
Confidence            9999864     6799998876532110                    00111 110  000112345677773      


Q ss_pred             CcEEEEecCCCCeE-EEEEc--CCCcEEEEecCCccc--CCC------CcceEEcCEEeeeecceeeeeeccCCCCCcee
Q psy731          278 DAFLYIADSGHNHI-VVYNY--RTNDSHIIHHNYLHF--DPL------FGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRV  346 (494)
Q Consensus       278 ~~~~YI~D~~~~gl-iVydl--~~~~swrv~~~~~~~--dP~------~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~  346 (494)
                      ++++|+++-..... ..-|.  ..++.+|+.-..--|  .|-      .......|.     -...||+++|+    ...
T Consensus       145 dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-----rnp~g~a~d~~----~g~  215 (352)
T 2ism_A          145 DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-----RNPQGLAWHPK----TGE  215 (352)
T ss_dssp             TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-----SEECCCEECTT----TCC
T ss_pred             CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-----CCcccEEEECC----CCC
Confidence            46899997321100 00000  113444443221000  010      001111111     12567999885    247


Q ss_pred             EEEeeCCCcc--------eEeeechh-hcCCCc----CccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeE
Q psy731          347 MYFHPLASTT--------EFAVTTKV-LQNRSL----DFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGV  413 (494)
Q Consensus       347 LYf~plss~~--------ly~V~T~~-L~~~~~----~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI  413 (494)
                      ||..-.....        +..|..-. .--+..    ........+..+.   +.....|+++-  +|.+|+++...+.|
T Consensus       216 l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~---~~~ap~G~~~~--~G~l~v~~~~~~~v  290 (352)
T 2ism_A          216 LFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP---QGFPPGNLAFF--RGDLYVAGLRGQAL  290 (352)
T ss_dssp             EEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT---TCCCEEEEEEE--TTEEEEEETTTTEE
T ss_pred             EEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC---CCCCCcceEEE--CCEEEEEECCCCEE
Confidence            8886544433        33332110 000000    0000111112221   12345688884  79999999999999


Q ss_pred             EEEeCCCCc-cccccceeeeeecCCeEecccceEEcCCceEEEEecC
Q psy731          414 GCWNTFRGE-EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNK  459 (494)
Q Consensus       414 ~~w~~~~~~-~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnr  459 (494)
                      .+.+.++.. .+.......+...   +.-|.++.+++||.|||+++.
T Consensus       291 ~~v~~~~~~~~~~~~~~~~~~~~---~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          291 LRLVLEGERGRWRVLRVETALSG---FGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEES---SCCEEEEEECTTSCEEEEECS
T ss_pred             EEEEECCCCcceeecchheeccc---CCCeeEEEECCCCcEEEEEeC
Confidence            999876410 1100001222211   234889999999999999864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.42  E-value=0.00067  Score=66.68  Aligned_cols=250  Identities=13%  Similarity=0.162  Sum_probs=133.8

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEE--EEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQ--VYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv--~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      ++..+.++++++ |++.+....     ....+.  .+|..++++...-.++.     .......+.+       ++.++|
T Consensus        51 ~p~~l~~spdg~~l~~~~~~~~-----~~~~v~~~~~~~~~g~~~~~~~~~~-----~~~~p~~~~~-------dg~~l~  113 (361)
T 3scy_A           51 NPSYLIPSADGKFVYSVNEFSK-----DQAAVSAFAFDKEKGTLHLLNTQKT-----MGADPCYLTT-------NGKNIV  113 (361)
T ss_dssp             CCCSEEECTTSSEEEEEECCSS-----TTCEEEEEEEETTTTEEEEEEEEEC-----SSSCEEEEEE-------CSSEEE
T ss_pred             CCceEEECCCCCEEEEEEccCC-----CCCcEEEEEEeCCCCcEEEeeEecc-----CCCCcEEEEE-------CCCEEE
Confidence            344466777775 777766311     011444  44555566544333332     2222333443       467899


Q ss_pred             EeeCCCCeEEEEEccCCc-eeEEe----cCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCc
Q psy731          205 IADSGHNHIVVYNYRTND-SHIIH----HNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDA  279 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~-~~rv~----~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~  279 (494)
                      +++...+.+.+||+.++. ..++.    +....+.|                     ..........++++.     +..
T Consensus       114 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~---------------------~~~~~~~~~~~~~sp-----dg~  167 (361)
T 3scy_A          114 TANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDK---------------------ERQTMPHLHCVRITP-----DGK  167 (361)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCT---------------------TTCSSCCEEEEEECT-----TSS
T ss_pred             EEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCc---------------------cccCCCcceEEEECC-----CCC
Confidence            999999999999997543 22221    11110110                     001112234456652     467


Q ss_pred             EEEEecCCCCeEEEEEcCCCcE------EEEe-c-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEee
Q psy731          280 FLYIADSGHNHIVVYNYRTNDS------HIIH-H-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHP  351 (494)
Q Consensus       280 ~~YI~D~~~~gliVydl~~~~s------wrv~-~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~p  351 (494)
                      ++|+++.+...+.+|++..+..      .... . ...              ......+..++++||+    ++.||+..
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~spd----g~~l~v~~  229 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF--------------KVAPGSGPRHLIFNSD----GKFAYLIN  229 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE--------------ECCTTCCEEEEEECTT----SSEEEEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce--------------ecCCCCCCeEEEEcCC----CCEEEEEc
Confidence            8999999889999998875431      1100 0 000              0001134567999997    37899976


Q ss_pred             C-CCc-ceEeeechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCC-eEEEeccC-CCeEEEEeCC--CCccc
Q psy731          352 L-AST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETG-VIFYALLV-KSGVGCWNTF--RGEEY  424 (494)
Q Consensus       352 l-ss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G-~ly~~~~~-~~aI~~w~~~--~~~~~  424 (494)
                      . .+. .+|.+.+..++           .++.+.. .+......+++++ .+| .||++.-. .+.|..|+.+  +| . 
T Consensus       230 ~~~~~v~v~~~~~g~~~-----------~~~~~~~~~~~~~~~~~i~~s-pdg~~l~v~~~~~~~~i~v~~~~~~~g-~-  295 (361)
T 3scy_A          230 EIGGTVIAFRYADGMLD-----------EIQTVAADTVNAQGSGDIHLS-PDGKYLYASNRLKADGVAIFKVDETNG-T-  295 (361)
T ss_dssp             TTTCEEEEEEEETTEEE-----------EEEEEESCSSCCCCEEEEEEC-TTSSEEEEEECSSSCEEEEEEECTTTC-C-
T ss_pred             CCCCeEEEEEecCCceE-----------EeEEEecCCCCCCCcccEEEC-CCCCEEEEECCCCCCEEEEEEEcCCCC-c-
Confidence            4 332 44554432221           1111111 0001123578999 566 58888877 7899999875  32 1 


Q ss_pred             cccceeeeeecCCeEecccceEEcCCce-EEEEe
Q psy731          425 NEKSMGLVAEDNATLIYPSDIRVDRTGV-LWVLS  457 (494)
Q Consensus       425 ~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvls  457 (494)
                          ...+..-.. =.+|.++.++++|. ||+..
T Consensus       296 ----~~~~~~~~~-g~~~~~~~~spdg~~l~~~~  324 (361)
T 3scy_A          296 ----LTKVGYQLT-GIHPRNFIITPNGKYLLVAC  324 (361)
T ss_dssp             ----EEEEEEEEC-SSCCCEEEECTTSCEEEEEE
T ss_pred             ----EEEeeEecC-CCCCceEEECCCCCEEEEEE
Confidence                222221111 14789999999985 77664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.42  E-value=7.2e-05  Score=76.98  Aligned_cols=258  Identities=12%  Similarity=0.120  Sum_probs=139.2

Q ss_pred             eeeeeee-eCCcEEEEecCCCCCCC-------ceeEEEEccCCCCCCCCCCCCccccCCCcc--cccccCCCceEEeeEE
Q psy731           64 LPVSLDK-WHDRLFLAVPRHKNGVP-------STLNYVMLPNSNNKNKSITSPILMPYPSWE--SNVREARNLTSVVKVQ  133 (494)
Q Consensus        64 ~p~gv~v-~~gRlFvt~PR~~~gvp-------~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~--~n~~~~~~lvsV~~i~  133 (494)
                      =|.++++ .+|++|++.--|.+|.+       ..+..+..++.        +++.+....-.  ++    ..--.+.++.
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~--------~~~~~~l~~~g~~~~----~~~f~PhGi~  118 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEK--------EPAVSELEIIGNTLD----ISSFNPHGIS  118 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSS--------SCCEEECEEECSSCC----GGGCCEEEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCC--------CCceEEEEccCCCCC----cCceeeeeeE
Confidence            3566666 58999999866666543       34666664421        12222111100  11    1123667776


Q ss_pred             EcC----CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC
Q psy731          134 SDP----CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG  209 (494)
Q Consensus       134 iD~----~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~  209 (494)
                      +..    ..+|||+|.+...    ..-.|+.+|..++.+...-.+..    .+-...||+++|-      ++-.|+|+..
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~----s~ielf~~d~~~~~~~~~~~~~g----~~~~~pND~~v~~------~G~fyvt~~~  184 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSS----STVEVFKFQEEEKSLLHLKTIRH----KLLPSVNDIVAVG------PEHFYATNDH  184 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTC----CEEEEEEEETTTTEEEEEEEECC----TTCSSEEEEEEEE------TTEEEEEESC
T ss_pred             EEECCCCcEEEEEEECCCCC----CeEEEEEEECCCCEEEEEecccc----CCCCCCceEEEeC------CCCEEecCCc
Confidence            633    3479999998531    12267888887765443333332    2456789999984      5667777652


Q ss_pred             -----------------CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeee
Q psy731          210 -----------------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVT  272 (494)
Q Consensus       210 -----------------~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~  272 (494)
                                       .++|+.||.  ++..++                               ...-...|+|+++. 
T Consensus       185 ~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~-------------------------------~~~l~~pNGia~sp-  230 (355)
T 3sre_A          185 YFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVV-------------------------------AEGFDFANGINISP-  230 (355)
T ss_dssp             SCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEE-------------------------------EEEESSEEEEEECT-
T ss_pred             EeCCcccccchhhccCCccEEEEEEC--CeEEEe-------------------------------ecCCcccCcceECC-
Confidence                             234555543  222222                               11223467888873 


Q ss_pred             cCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeC
Q psy731          273 SANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPL  352 (494)
Q Consensus       273 ~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pl  352 (494)
                          ++.++|++|+..+.|.+|++..+...  ..               .+.|......+||++++.  +|  .||....
T Consensus       231 ----Dg~~lYvadt~~~~I~~~~~~~~g~l--~~---------------~~~~~~~g~PDGi~vD~e--~G--~lwva~~  285 (355)
T 3sre_A          231 ----DGKYVYIAELLAHKIHVYEKHANWTL--TP---------------LRVLSFDTLVDNISVDPV--TG--DLWVGCH  285 (355)
T ss_dssp             ----TSSEEEEEEGGGTEEEEEEECTTSCE--EE---------------EEEEECSSEEEEEEECTT--TC--CEEEEEE
T ss_pred             ----CCCEEEEEeCCCCeEEEEEECCCCcE--ec---------------CEEEeCCCCCceEEEeCC--CC--cEEEEec
Confidence                46799999999999999998743211  11               011222234677999762  13  5776332


Q ss_pred             -CCc-------------ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEE
Q psy731          353 -AST-------------TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGC  415 (494)
Q Consensus       353 -ss~-------------~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~  415 (494)
                       .+.             .+++|... +     + + -..--+.+.+.|..-++...++ +.+|.||+|-+-...+.|
T Consensus       286 ~~g~~v~~~~P~~~~~s~v~rI~~~-~-----~-~-~~~v~~v~~ddG~~l~~~T~a~-~~~g~L~iGsv~~~~l~c  353 (355)
T 3sre_A          286 PNGMRIFFYDAENPPGSEVLRIQDI-L-----S-E-EPKVTVVYAENGTVLQGSTVAA-VYKGKLLIGTVFHKALYC  353 (355)
T ss_dssp             SCHHHHHSCCTTSCCCEEEEEEECT-T-----S-S-SCEEEEEEEECSSSCCSEEEEE-EETTEEEEEESSSCEEEE
T ss_pred             CCceEEEEECCCCCCCCEEEEEEcc-C-----C-C-CcEEEEEEEcCCCEEEeeEEEE-EECCEEEEEEcCCCceec
Confidence             322             33344321 0     0 0 1122334445553333223333 367999999998888877

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.40  E-value=0.00015  Score=69.58  Aligned_cols=195  Identities=8%  Similarity=0.047  Sum_probs=122.0

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .+.++.+|++++|||.+.+..        .|.+||++++++........   ..+....+++++|      .++.+|+||
T Consensus        70 ~~~~l~~~~dg~l~v~~~~~~--------~i~~~d~~~g~~~~~~~~~~---~~~~~~~~~i~~d------~~G~l~vtd  132 (296)
T 3e5z_A           70 HQNGHCLNKQGHLIACSHGLR--------RLERQREPGGEWESIADSFE---GKKLNSPNDVCLA------PDGSLWFSD  132 (296)
T ss_dssp             SEEEEEECTTCCEEEEETTTT--------EEEEECSTTCCEEEEECEET---TEECCCCCCEEEC------TTSCEEEEE
T ss_pred             CcceeeECCCCcEEEEecCCC--------eEEEEcCCCCcEEEEeeccC---CCCCCCCCCEEEC------CCCCEEEEC
Confidence            467889999999999998866        79999999998754332211   1234567889987      466799998


Q ss_pred             CC-----------------CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEe
Q psy731          208 SG-----------------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVD  270 (494)
Q Consensus       208 s~-----------------~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD  270 (494)
                      +.                 .++|..||.. ++..++..                               .....+.++++
T Consensus       133 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-------------------------------~~~~~~gi~~s  180 (296)
T 3e5z_A          133 PTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR-------------------------------DRVKPNGLAFL  180 (296)
T ss_dssp             CSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC-------------------------------CCSSEEEEEEC
T ss_pred             CccccccccccccccccCCCcEEEEECCC-CCEEEeec-------------------------------CCCCCccEEEC
Confidence            72                 3477777766 55544421                               11224566665


Q ss_pred             eecCCCCCcEEEEecCCCCeEEEEEcC-CCcE---EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCcee
Q psy731          271 VTSANCDDAFLYIADSGHNHIVVYNYR-TNDS---HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRV  346 (494)
Q Consensus       271 ~~~~~c~~~~~YI~D~~~~gliVydl~-~~~s---wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~  346 (494)
                      .     +...+ ++|.....|.+||+. +++.   .++. .. .                 ....+||+++++   |  .
T Consensus       181 ~-----dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~-~-----------------~~~p~~i~~d~~---G--~  230 (296)
T 3e5z_A          181 P-----SGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TV-E-----------------PGKTDGLRVDAG---G--L  230 (296)
T ss_dssp             T-----TSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CC-S-----------------SSCCCSEEEBTT---S--C
T ss_pred             C-----CCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eC-C-----------------CCCCCeEEECCC---C--C
Confidence            3     34556 899888999999987 3432   1221 10 0                 123567999875   3  6


Q ss_pred             EEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEee-CCCCeEEEeccCCCeEEEEeCCC
Q psy731          347 MYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLD-EETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       347 LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D-~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ||...  +..++.+..+    .        +.++.+...  .. ...++++ +..+.||.+.-  +++.++++++
T Consensus       231 l~v~~--~~~v~~~~~~----g--------~~~~~~~~~--~~-~~~~~f~~~d~~~L~v~t~--~~l~~~~~~~  286 (296)
T 3e5z_A          231 IWASA--GDGVHVLTPD----G--------DELGRVLTP--QT-TSNLCFGGPEGRTLYMTVS--TEFWSIETNV  286 (296)
T ss_dssp             EEEEE--TTEEEEECTT----S--------CEEEEEECS--SC-CCEEEEESTTSCEEEEEET--TEEEEEECSC
T ss_pred             EEEEc--CCeEEEECCC----C--------CEEEEEECC--CC-ceeEEEECCCCCEEEEEcC--CeEEEEEccc
Confidence            88877  3456555421    1        112222211  12 4566774 34558999864  6999999987

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.39  E-value=1.5e-05  Score=76.92  Aligned_cols=74  Identities=9%  Similarity=0.068  Sum_probs=56.5

Q ss_pred             EEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCe
Q psy731          133 QSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNH  212 (494)
Q Consensus       133 ~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~  212 (494)
                      .....+++||...+..        +|.+||+.++++++++.++.      ......++++     .++.++|++....+.
T Consensus         6 ~~~~~~~~~v~~~~~~--------~v~~~d~~~~~~~~~~~~~~------~~~~~~~~~s-----~dg~~~~v~~~~~~~   66 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPN--------NLHVVDVASDTVYKSCVMPD------KFGPGTAMMA-----PDNRTAYVLNNHYGD   66 (349)
T ss_dssp             CCCTTCEEEEEEETTT--------EEEEEETTTTEEEEEEECSS------CCSSCEEEEC-----TTSSEEEEEETTTTE
T ss_pred             cccCCCEEEEEeCCCC--------eEEEEECCCCcEEEEEecCC------CCCCceeEEC-----CCCCEEEEEeCCCCc
Confidence            3446778899887766        89999999999999888765      1123455553     245789999999999


Q ss_pred             EEEEEccCCceeE
Q psy731          213 IVVYNYRTNDSHI  225 (494)
Q Consensus       213 iIVyd~~~~~~~r  225 (494)
                      |.+||+.+++..+
T Consensus        67 i~~~d~~t~~~~~   79 (349)
T 1jmx_B           67 IYGIDLDTCKNTF   79 (349)
T ss_dssp             EEEEETTTTEEEE
T ss_pred             EEEEeCCCCcEEE
Confidence            9999999887643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=98.36  E-value=0.00015  Score=69.44  Aligned_cols=236  Identities=12%  Similarity=0.113  Sum_probs=131.7

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECC---CCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLR---QQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~---t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      .+..+.++++++ |++.+.+..        .|.+||+.   +.+.++.+..        ......++++-     +..++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~--------~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~s~-----dg~~l  143 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAG--------NVSVTRLEDGLPVGVVDVVEG--------LDGCHSANISP-----DNRTL  143 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTT--------EEEEEEEETTEEEEEEEEECC--------CTTBCCCEECT-----TSSEE
T ss_pred             CCcEEEEcCCCCEEEEEecCCC--------eEEEEECCCCccccccccccC--------CCCceEEEECC-----CCCEE
Confidence            456677777776 777776544        78888884   3344444332        23455666642     56789


Q ss_pred             EEeeCCCCeEEEEEccC-CceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          204 YIADSGHNHIVVYNYRT-NDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~-~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      |+++.+.+.|.+||+.+ ++...+.....                         ....+.....++++.     +..++|
T Consensus       144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~p-----dg~~l~  193 (343)
T 1ri6_A          144 WVPALKQDRICLFTVSDDGHLVAQDPAEV-------------------------TTVEGAGPRHMVFHP-----NEQYAY  193 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEE-------------------------ECSTTCCEEEEEECT-----TSSEEE
T ss_pred             EEecCCCCEEEEEEecCCCceeeeccccc-------------------------ccCCCCCcceEEECC-----CCCEEE
Confidence            99998889999999988 66544320000                         011122344555543     457899


Q ss_pred             EecCCCCeEEEEEcCC--CcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceE
Q psy731          283 IADSGHNHIVVYNYRT--NDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEF  358 (494)
Q Consensus       283 I~D~~~~gliVydl~~--~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly  358 (494)
                      +++.....+.+||+..  ++..........+..           +.-...+.+|+++|+    ++.||+..-...  .+|
T Consensus       194 ~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~i~~s~d----g~~l~v~~~~~~~i~v~  258 (343)
T 1ri6_A          194 CVNELNSSVDVWELKDPHGNIECVQTLDMMPEN-----------FSDTRWAADIHITPD----GRHLYACDRTASLITVF  258 (343)
T ss_dssp             EEETTTTEEEEEESSCTTSCCEEEEEEECSCTT-----------CCSCCCEEEEEECTT----SSEEEEEETTTTEEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCcEEEEeeccccCcc-----------ccccCCccceEECCC----CCEEEEEecCCCEEEEE
Confidence            9998888999999953  332212111101100           000123456999987    368887654333  444


Q ss_pred             eeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEE--eCCCCccccccceeeeeec
Q psy731          359 AVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCW--NTFRGEEYNEKSMGLVAED  435 (494)
Q Consensus       359 ~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w--~~~~~~~~~~~~~~~v~~d  435 (494)
                      .+..+   ...      ...+..+...   ....+++++ .+| .||++.-..+.|..|  |+.+| .     ...+..-
T Consensus       259 d~~~~---~~~------~~~~~~~~~~---~~~~~~~~s-~dg~~l~~~~~~~~~v~v~~~d~~~g-~-----~~~~~~~  319 (343)
T 1ri6_A          259 SVSED---GSV------LSKEGFQPTE---TQPRGFNVD-HSGKYLIAAGQKSHHISVYEIVGEQG-L-----LHEKGRY  319 (343)
T ss_dssp             EECTT---SCC------EEEEEEEECS---SSCCCEEEC-TTSSEEEEECTTTCEEEEEEEETTTT-E-----EEEEEEE
T ss_pred             EEcCC---CCc------eEEeeeecCC---CccceEEEC-CCCCEEEEecCCCCeEEEEEEcCCCc-e-----eeEcccc
Confidence            44310   000      0111112111   125678999 456 588888888999999  55553 2     2233221


Q ss_pred             CCeEecccceEEcC
Q psy731          436 NATLIYPSDIRVDR  449 (494)
Q Consensus       436 ~~~l~~pd~~~id~  449 (494)
                      +. -..|.++.+.+
T Consensus       320 ~~-g~~p~~i~~~~  332 (343)
T 1ri6_A          320 AV-GQGPMWVVVNA  332 (343)
T ss_dssp             EC-SSSCCEEEEEE
T ss_pred             cc-CCCCeeEEEEc
Confidence            11 14677777754

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.36  E-value=0.00015  Score=69.16  Aligned_cols=216  Identities=10%  Similarity=0.000  Sum_probs=125.8

Q ss_pred             EeeEEEcCCC-eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDPCD-RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~~~-~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      +..+.+++++ .||+.+....        .|.+||+.++++++++.++..  .........++++-     ++.++|+++
T Consensus        36 ~~~~~~s~dg~~l~v~~~~~~--------~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~-----dg~~l~~~~  100 (337)
T 1pby_B           36 PMVPMVAPGGRIAYATVNKSE--------SLVKIDLVTGETLGRIDLSTP--EERVKSLFGAALSP-----DGKTLAIYE  100 (337)
T ss_dssp             CCCEEECTTSSEEEEEETTTT--------EEEEEETTTCCEEEEEECCBT--TEEEECTTCEEECT-----TSSEEEEEE
T ss_pred             ccceEEcCCCCEEEEEeCCCC--------eEEEEECCCCCeEeeEEcCCc--ccccccccceEECC-----CCCEEEEEe
Confidence            4566788877 6888886554        799999999999998887540  00112345666642     566899996


Q ss_pred             C-----------CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731          208 S-----------GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC  276 (494)
Q Consensus       208 s-----------~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c  276 (494)
                      .           ..+.|.+||+.+++..+.-.                               .+.....++++.     
T Consensus       101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------------------------~~~~~~~~~~s~-----  144 (337)
T 1pby_B          101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFE-------------------------------APRQITMLAWAR-----  144 (337)
T ss_dssp             EEEEECSSCEEECCCEEEEEETTTTEEEEEEE-------------------------------CCSSCCCEEECT-----
T ss_pred             cccccccccccccCceEEEEECCCCcEEEEEe-------------------------------CCCCcceeEECC-----
Confidence            3           34789999998887644310                               011223344432     


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEec-C----CcccCCCCcceEEc------------------------------
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHH-N----YLHFDPLFGDFTIG------------------------------  321 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~-~----~~~~dP~~~~~~v~------------------------------  321 (494)
                      ++.++|+++   ..|.+||+++++..+... .    .....|....+.+.                              
T Consensus       145 dg~~l~~~~---~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  221 (337)
T 1pby_B          145 DGSKLYGLG---RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL  221 (337)
T ss_dssp             TSSCEEEES---SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred             CCCEEEEeC---CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence            356788883   569999999887654432 1    11112211111000                              


Q ss_pred             -------CEE----ee-eecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCC
Q psy731          322 -------GVN----FQ-WQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGS  389 (494)
Q Consensus       322 -------G~~----f~-~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~  389 (494)
                             |+.    +. ...++.+++++|+    ++.||..   ...++.+..+-.           +.++.+. .+  .
T Consensus       222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~d----g~~l~~~---~~~v~~~d~~~~-----------~~~~~~~-~~--~  280 (337)
T 1pby_B          222 LTMDLETGEMAMREVRIMDVFYFSTAVNPA----KTRAFGA---YNVLESFDLEKN-----------ASIKRVP-LP--H  280 (337)
T ss_dssp             EEEETTTCCEEEEEEEECSSCEEEEEECTT----SSEEEEE---ESEEEEEETTTT-----------EEEEEEE-CS--S
T ss_pred             EEEeCCCCCceEeecCCCCCceeeEEECCC----CCEEEEe---CCeEEEEECCCC-----------cCcceec-CC--C
Confidence                   000    00 0124567999987    3678887   335555543211           0111111 11  2


Q ss_pred             CCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCC
Q psy731          390 QSGASSLDEETG-VIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       390 qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ...+++++ .+| .||.+ -..+.|.+||..++
T Consensus       281 ~~~~~~~s-~dg~~l~~~-~~~~~i~v~d~~~~  311 (337)
T 1pby_B          281 SYYSVNVS-TDGSTVWLG-GALGDLAAYDAETL  311 (337)
T ss_dssp             CCCEEEEC-TTSCEEEEE-SBSSEEEEEETTTC
T ss_pred             ceeeEEEC-CCCCEEEEE-cCCCcEEEEECcCC
Confidence            35678999 566 57777 55789999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.34  E-value=6.3e-05  Score=75.45  Aligned_cols=230  Identities=12%  Similarity=0.067  Sum_probs=140.8

Q ss_pred             eeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC
Q psy731          130 VKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG  209 (494)
Q Consensus       130 ~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~  209 (494)
                      ..+..++.+++++......        .|.+||+.++++++.+..+.  ..........+++.      .++.+|++.+.
T Consensus       126 ~~~~~s~~~~~~~~~~~~~--------~i~~~d~~~g~~~~~~~~~~--~~~~~~~v~~~~~~------~~~~~~~s~~~  189 (433)
T 3bws_A          126 KSVRFIDNTRLAIPLLEDE--------GMDVLDINSGQTVRLSPPEK--YKKKLGFVETISIP------EHNELWVSQMQ  189 (433)
T ss_dssp             CCCEESSSSEEEEEBTTSS--------SEEEEETTTCCEEEECCCHH--HHTTCCEEEEEEEG------GGTEEEEEEGG
T ss_pred             eEEEEeCCCeEEEEeCCCC--------eEEEEECCCCeEeeecCccc--ccccCCceeEEEEc------CCCEEEEEECC
Confidence            3556667777888765443        69999999999887554322  11233344555552      45779999999


Q ss_pred             CCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          210 HNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       210 ~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      .+.|.+||+++++..+. ..                               .......++++.     ++.++|+++..+
T Consensus       190 d~~v~~~d~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~-----~~~~l~~~~~~~  233 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVDL-------------------------------TGKWSKILLYDP-----IRDLVYCSNWIS  233 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEEC-------------------------------SSSSEEEEEEET-----TTTEEEEEETTT
T ss_pred             CCEEEEEECCCceEEEEEcC-------------------------------CCCCeeEEEEcC-----CCCEEEEEecCC
Confidence            99999999998776443 11                               111234455542     457889998888


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-------cceEeee
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-------TTEFAVT  361 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-------~~ly~V~  361 (494)
                      ..|.+||+++++.-+....                    ..++.+++++|+    ++.||.....+       ..++..+
T Consensus       234 ~~i~~~d~~~~~~~~~~~~--------------------~~~~~~~~~~~~----g~~l~~~~~~~~~~~~~dg~i~~~d  289 (433)
T 3bws_A          234 EDISVIDRKTKLEIRKTDK--------------------IGLPRGLLLSKD----GKELYIAQFSASNQESGGGRLGIYS  289 (433)
T ss_dssp             TEEEEEETTTTEEEEECCC--------------------CSEEEEEEECTT----SSEEEEEEEESCTTCSCCEEEEEEE
T ss_pred             CcEEEEECCCCcEEEEecC--------------------CCCceEEEEcCC----CCEEEEEECCCCccccCCCeEEEEE
Confidence            8999999988764322111                    123567999987    36788765422       1222322


Q ss_pred             chhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      .+   ..        +.++.++..   ....++++++....||++....+.|..||.+++..     ...+...    ..
T Consensus       290 ~~---~~--------~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~-----~~~~~~~----~~  346 (433)
T 3bws_A          290 MD---KE--------KLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV-----QKSIPVF----DK  346 (433)
T ss_dssp             TT---TT--------EEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE-----EEEEECS----SS
T ss_pred             CC---CC--------cEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE-----EEEecCC----CC
Confidence            21   11        112222222   12456888843337999989999999999987421     1222221    34


Q ss_pred             ccceEEcCCce-EEEEec
Q psy731          442 PSDIRVDRTGV-LWVLSN  458 (494)
Q Consensus       442 pd~~~id~~g~-Lwvlsn  458 (494)
                      |.++.+.++|. ||+.+.
T Consensus       347 ~~~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          347 PNTIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEEEECTTSSEEEEEEC
T ss_pred             CCeEEEcCCCCEEEEEec
Confidence            67888888884 777653

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=98.32  E-value=0.00022  Score=69.65  Aligned_cols=268  Identities=14%  Similarity=0.099  Sum_probs=146.1

Q ss_pred             CCCeeeeeee-eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCe
Q psy731           61 ENCLPVSLDK-WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDR  139 (494)
Q Consensus        61 ~~~~p~gv~v-~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~  139 (494)
                      ...-|.++++ .+|++|++--..   -..++..+..+.          +.++..-..      ......+..+.++++++
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~---~~~~v~~~~~~~----------g~~~~~~~~------~~~~~~p~~~a~spdg~   98 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKED---DEGGIAAWQIDG----------QTAHKLNTV------VAPGTPPAYVAVDEARQ   98 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEET---TEEEEEEEEEET----------TEEEEEEEE------EEESCCCSEEEEETTTT
T ss_pred             ccCCcceEEEccCCeEEEEEecC---CCceEEEEEecC----------CcEEEeeee------ecCCCCCEEEEECCCCC
Confidence            3455777887 478887776431   123455544322          122111000      00123455677888776


Q ss_pred             -EEEEeCCCCCCCCCCCCEEEEEECC-CCcE--EEEEEcCCCcc--ccccCCccceEEEeecCCCCCcEEEEeeCCCCeE
Q psy731          140 -LWALDSGVVEGKMEQPPSVQVYDLR-QQMQ--IRFFQLKEKTD--YTEESKFSNMVVDVTSANCDNAFLYIADSGHNHI  213 (494)
Q Consensus       140 -LwvlD~G~~~~~~~~~Pklv~~dl~-t~~v--i~~~~lp~~~~--~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~i  213 (494)
                       |++.+.+..        .+.+||+. ++++  +.++.......  ....+....++++-     +.. +|++|.+.+.|
T Consensus        99 ~l~~~~~~~~--------~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~-l~v~~~~~~~v  164 (347)
T 3hfq_A           99 LVYSANYHKG--------TAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNR-LAVIDLGSDKV  164 (347)
T ss_dssp             EEEEEETTTT--------EEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSC-EEEEETTTTEE
T ss_pred             EEEEEeCCCC--------EEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCc-EEEEeCCCCEE
Confidence             777775544        68888885 3333  33333221000  00122344555542     333 99999999999


Q ss_pred             EEEEcc-CCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEE
Q psy731          214 VVYNYR-TNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIV  292 (494)
Q Consensus       214 IVyd~~-~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gli  292 (494)
                      .+||+. +|+...+...                           ....+.....++++.     +..++|+++.....+.
T Consensus       165 ~~~~~~~~g~~~~~~~~---------------------------~~~~g~~p~~~~~sp-----dg~~l~v~~~~~~~v~  212 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVL---------------------------TMEAGFGPRHLVFSP-----DGQYAFLAGELSSQIA  212 (347)
T ss_dssp             EEEEECTTSCEEEEEEE---------------------------ECCTTCCEEEEEECT-----TSSEEEEEETTTTEEE
T ss_pred             EEEEECCCCcEEEeeeE---------------------------EcCCCCCCceEEECC-----CCCEEEEEeCCCCEEE
Confidence            999998 6655444210                           011222345566653     4578999999899999


Q ss_pred             EEEcCC--CcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--ceEeeechhhcCC
Q psy731          293 VYNYRT--NDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--TEFAVTTKVLQNR  368 (494)
Q Consensus       293 Vydl~~--~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--~ly~V~T~~L~~~  368 (494)
                      ||++..  ++...+..-...+.  .         +.-..+..+|++||+    +++||.......  .+|.+...    .
T Consensus       213 v~~~~~~~g~~~~~~~~~~~~~--~---------~~~~~~~~~i~~spd----G~~l~v~~~~~~~v~v~~~~~~----g  273 (347)
T 3hfq_A          213 SLKYDTQTGAFTQLGIVKTIPA--D---------YTAHNGAAAIRLSHD----GHFLYVSNRGYNTLAVFAVTAD----G  273 (347)
T ss_dssp             EEEEETTTTEEEEEEEEESSCT--T---------CCSCCEEEEEEECTT----SCEEEEEEETTTEEEEEEECGG----G
T ss_pred             EEEecCCCCceEEeeeeeecCC--C---------CCCCCcceeEEECCC----CCEEEEEeCCCCEEEEEEECCC----C
Confidence            999874  44322222111110  0         000124677999997    378998654332  55555321    1


Q ss_pred             CcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEE--eCCCC
Q psy731          369 SLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCW--NTFRG  421 (494)
Q Consensus       369 ~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w--~~~~~  421 (494)
                      .+      ..++.+...|  ....+++++ .+| .||++.-..+.|..|  |+.+|
T Consensus       274 ~~------~~~~~~~~~~--~~~~~~~~s-pdg~~l~v~~~~~~~v~v~~~d~~tg  320 (347)
T 3hfq_A          274 HL------TLIQQISTEG--DFPRDFDLD-PTEAFVVVVNQNTDNATLYARDLTSG  320 (347)
T ss_dssp             CE------EEEEEEECSS--SCCCEEEEC-TTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred             cE------EEeEEEecCC--CCcCeEEEC-CCCCEEEEEEcCCCcEEEEEEeCCCC
Confidence            10      1111111111  235689999 566 699998888999999  66553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=2.4e-05  Score=83.92  Aligned_cols=205  Identities=12%  Similarity=0.137  Sum_probs=123.0

Q ss_pred             CcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEE-------eee
Q psy731          200 NAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVV-------DVT  272 (494)
Q Consensus       200 ~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~V-------D~~  272 (494)
                      +..+||++...++|.++|++++....+-....                           .....+..|++       |. 
T Consensus       151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~---------------------------~~~~~p~~ia~~~~~~~~d~-  202 (496)
T 3kya_A          151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINT---------------------------IPTNRIRSIAFNKKIEGYAD-  202 (496)
T ss_dssp             EEEEEEEEETEEEEEEEETTTTEEEEEECCTT---------------------------SSCSBEEEEEECCCBTTTBC-
T ss_pred             CCEEEEEECCCCeEEEEECCCCEEEEEEccCc---------------------------cccCCCcEEEEeecccccCC-
Confidence            67899999988899999999998877621000                           01124677777       53 


Q ss_pred             cCCCCCcEEEEecCCC------CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCcee
Q psy731          273 SANCDDAFLYIADSGH------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRV  346 (494)
Q Consensus       273 ~~~c~~~~~YI~D~~~------~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~  346 (494)
                          +..++|++|-.+      +++++++.+.+..|       ..-+..  -.+.  .+   .+-.||+++|+    .+.
T Consensus       203 ----~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~-------~~~~~~--~~v~--~~---~~p~giavdp~----~g~  260 (496)
T 3kya_A          203 ----EAEYMIVAIDYDGKGDESPSVYIIKRNADGTF-------DDRSDI--QLIA--AY---KQCNGATIHPI----NGE  260 (496)
T ss_dssp             ----TTCEEEEEECCCTTGGGEEEEEEEECCTTSCC-------STTSCE--EEEE--EE---SCCCCEEECTT----TCC
T ss_pred             ----CCCEEEEEeCCCCCcccCceEEEEecCCCCce-------eecccc--eeec--cC---CCceEEEEcCC----CCe
Confidence                345899999775      34777764431111       100000  0111  12   24577999886    369


Q ss_pred             EEEeeCCCcceEeeechh----hcCCCc-Cc--cccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeC
Q psy731          347 MYFHPLASTTEFAVTTKV----LQNRSL-DF--SRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNT  418 (494)
Q Consensus       347 LYf~plss~~ly~V~T~~----L~~~~~-~~--~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~  418 (494)
                      ||+.-....++|++..+.    ..++.+ ..  ......++.+...+..+..-++++| ..|+ ||+++...+.|.+++.
T Consensus       261 LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~-p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          261 LYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIH-PTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             EEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEEC-TTSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEc-CCCCEEEEEeCCCCEEEEEec
Confidence            999988888899998761    112222 00  0000012222222222334689999 6776 9999999999999776


Q ss_pred             CCCc-cccccceeeeeec------------CCeEeccc-ceEEc-------CCceEEEEe
Q psy731          419 FRGE-EYNEKSMGLVAED------------NATLIYPS-DIRVD-------RTGVLWVLS  457 (494)
Q Consensus       419 ~~~~-~~~~~~~~~v~~d------------~~~l~~pd-~~~id-------~~g~Lwvls  457 (494)
                      ++.. .+.  +..+++-.            ..+|..|. ++.++       .+|.|||.-
T Consensus       340 dg~~~~~~--~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD  397 (496)
T 3kya_A          340 DEIKKEFI--TPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVD  397 (496)
T ss_dssp             ETTTTEEC--CCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEE
T ss_pred             CCCcceec--ccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEE
Confidence            5400 110  11233321            24788999 88887       688999984

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=98.28  E-value=0.00031  Score=69.13  Aligned_cols=217  Identities=14%  Similarity=0.165  Sum_probs=119.7

Q ss_pred             eEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEE----EEEcCCCcc---ccccCCccceEEEeecCCCCCcEE
Q psy731          131 KVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIR----FFQLKEKTD---YTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       131 ~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~----~~~lp~~~~---~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      .+.+ ....|++.+.+..        .+.+|++.++..+.    .........   -...+....++++     .+..++
T Consensus       104 ~~~~-dg~~l~~~~~~~~--------~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-----pdg~~l  169 (361)
T 3scy_A          104 YLTT-NGKNIVTANYSGG--------SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-----PDGKYL  169 (361)
T ss_dssp             EEEE-CSSEEEEEETTTT--------EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-----TTSSEE
T ss_pred             EEEE-CCCEEEEEECCCC--------EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-----CCCCEE
Confidence            3344 3446777776554        67888887553321    111111000   0012233445554     267789


Q ss_pred             EEeeCCCCeEEEEEccCCce------eEEe-cCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731          204 YIADSGHNHIVVYNYRTNDS------HIIH-HNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC  276 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~------~rv~-~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c  276 (494)
                      |+++.+.+.|.||++..+..      .... ...                  .      .....+.....++++.     
T Consensus       170 ~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~------------------~------~~~~~~~~~~~~~~sp-----  220 (361)
T 3scy_A          170 LADDLGTDQIHKFNINPNANADNKEKFLTKGTPE------------------A------FKVAPGSGPRHLIFNS-----  220 (361)
T ss_dssp             EEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE------------------E------EECCTTCCEEEEEECT-----
T ss_pred             EEEeCCCCEEEEEEEcCCCCcccccceeeccccc------------------c------eecCCCCCCeEEEEcC-----
Confidence            99999999999999886542      1100 000                  0      0011223345566653     


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-C-
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-S-  354 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-s-  354 (494)
                      +..++|+++.....|.|||+.+++.-.+..-...+..              ..+..+|++||+    +++||..... . 
T Consensus       221 dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~--------------~~~~~~i~~spd----g~~l~v~~~~~~~  282 (361)
T 3scy_A          221 DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN--------------AQGSGDIHLSPD----GKYLYASNRLKAD  282 (361)
T ss_dssp             TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC--------------CCCEEEEEECTT----SSEEEEEECSSSC
T ss_pred             CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC--------------CCCcccEEECCC----CCEEEEECCCCCC
Confidence            4578999998888999999987654333221111110              123467999997    3789986654 2 


Q ss_pred             -cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEE--EeCCCC
Q psy731          355 -TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGC--WNTFRG  421 (494)
Q Consensus       355 -~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~--w~~~~~  421 (494)
                       -.+|.+..+   +..+      ..+..+.. |  ....+++++ .+| .||++....+.|..  ||+.+|
T Consensus       283 ~i~v~~~~~~---~g~~------~~~~~~~~-g--~~~~~~~~s-pdg~~l~~~~~~~~~v~v~~~d~~~g  340 (361)
T 3scy_A          283 GVAIFKVDET---NGTL------TKVGYQLT-G--IHPRNFIIT-PNGKYLLVACRDTNVIQIFERDQATG  340 (361)
T ss_dssp             EEEEEEECTT---TCCE------EEEEEEEC-S--SCCCEEEEC-TTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred             EEEEEEEcCC---CCcE------EEeeEecC-C--CCCceEEEC-CCCCEEEEEECCCCCEEEEEEECCCC
Confidence             256666421   1110      11111111 2  235689999 566 58998878888887  565553

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.24  E-value=0.00012  Score=77.07  Aligned_cols=254  Identities=11%  Similarity=-0.034  Sum_probs=143.2

Q ss_pred             CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC---------
Q psy731          138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS---------  208 (494)
Q Consensus       138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs---------  208 (494)
                      .++||.+.+....   . -.|.++|+.|++++.++....        .. .++++     .++.++|++++         
T Consensus        85 ~~vyV~n~~~~~~---~-~~VsVID~~t~~vv~~I~vG~--------~P-gia~S-----pDgk~lyVan~~~~~~~~G~  146 (426)
T 3c75_H           85 RRVYIQDPAHFAA---I-TQQFVIDGSTGRILGMTDGGF--------LP-HPVAA-----EDGSFFAQASTVFERIARGK  146 (426)
T ss_dssp             TEEEEEECTTTCS---S-EEEEEEETTTTEEEEEEEECS--------SC-EEEEC-----TTSSCEEEEEEEEEETTEEE
T ss_pred             CEEEEECCCcCCC---C-CeEEEEECCCCEEEEEEECCC--------CC-ceEEC-----CCCCEEEEEeccccccccCC
Confidence            5899999875310   0 389999999999999998765        12 56664     37889999996         


Q ss_pred             CCCeEEEEEccCCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          209 GHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      ..+.|-|+|..+++.-+ |.              +.|..         .. ..+.....++++.     +..++|+++..
T Consensus       147 ~~~~VsviD~~t~~vv~~I~--------------v~g~~---------r~-~~g~~P~~~~~sp-----DGk~lyV~n~~  197 (426)
T 3c75_H          147 RTDYVEVFDPVTFLPIADIE--------------LPDAP---------RF-LVGTYQWMNALTP-----DNKNLLFYQFS  197 (426)
T ss_dssp             EEEEEEEECTTTCCEEEEEE--------------ETTCC---------CC-CBSCCGGGSEECT-----TSSEEEEEECS
T ss_pred             CCCEEEEEECCCCcEEEEEE--------------CCCcc---------cc-ccCCCcceEEEcC-----CCCEEEEEecC
Confidence            35689999999987643 21              00000         00 0012234566653     46899999875


Q ss_pred             -CCeEEEEEcCCCcEE-EEecCC---cccCCCC--cceEEcCEEeee---------------ecce----eeeeeccCCC
Q psy731          288 -HNHIVVYNYRTNDSH-IIHHNY---LHFDPLF--GDFTIGGVNFQW---------------QTGI----HGMSLSPLTR  341 (494)
Q Consensus       288 -~~gliVydl~~~~sw-rv~~~~---~~~dP~~--~~~~v~G~~f~~---------------~~Gi----~gIaLsp~~~  341 (494)
                       .+.|.|+|.++++.- ++.-..   ..|+...  ..+.-+|+....               ..+-    ..++++++  
T Consensus       198 ~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~d--  275 (426)
T 3c75_H          198 PAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLR--  275 (426)
T ss_dssp             SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTT--
T ss_pred             CCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCC--
Confidence             678999999998753 222111   1111000  000001111100               0000    11233444  


Q ss_pred             CCceeEEEeeCCCcceEeeechhhcCCCcCccccccceE-------EecccCCCCCCCeEEeeCCCCeEEEeccC-----
Q psy731          342 DNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFK-------VMGSRGTGSQSGASSLDEETGVIFYALLV-----  409 (494)
Q Consensus       342 ~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~-------~~G~~G~~~qs~g~~~D~~~G~ly~~~~~-----  409 (494)
                        .+.+||.+..+ ++|.+..+-   ....   ....++       ..|.+.  .....+++++..+.||.+.-+     
T Consensus       276 --g~~~~~~s~~g-~V~ViD~~~---~~~~---v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          276 --SGRLVWPTYTG-KIFQADLTA---EGAT---FRAPIEALTEAERADDWRP--GGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             --TCEEEEEBTTS-EEEEEEECS---SCEE---ECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             --CCEEEEEeCCC-cEEEEeccC---CceE---Eeeeeeecccccccccccc--CCceeeEEcCCCCEEEEEeccccccc
Confidence              25777777755 677776521   0000   000111       112220  112348899666799998752     


Q ss_pred             ----CCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EEEEecCc
Q psy731          410 ----KSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LWVLSNKL  460 (494)
Q Consensus       410 ----~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvlsnrl  460 (494)
                          .+.|...|+.+++     -+..+--.    ..|.++.++++|. +++.+|..
T Consensus       345 hk~~s~~VsVID~~T~k-----vv~~I~vg----~~P~gia~spDg~~~lyv~n~~  391 (426)
T 3c75_H          345 HKAASRFVVVLNAETGE-----RINKIELG----HEIDSINVSQDAEPLLYALSAG  391 (426)
T ss_dssp             TTSCEEEEEEEETTTCC-----EEEEEEEE----EEECEEEECCSSSCEEEEEETT
T ss_pred             ccCCCCEEEEEECCCCe-----EEEEEECC----CCcCeEEEccCCCEEEEEEcCC
Confidence                3579999998731     12222221    3699999999997 77777754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.24  E-value=6.3e-05  Score=73.29  Aligned_cols=196  Identities=9%  Similarity=0.078  Sum_probs=117.7

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .+.++..|.+++||+.+.+..        .|.+||.. +++.....-..   ..+....+++++|      .++.+|+||
T Consensus        87 ~~~gl~~d~dG~l~v~~~~~~--------~v~~~~~~-g~~~~~~~~~~---~~~~~~~~~i~~d------~dG~l~~td  148 (305)
T 3dr2_A           87 FTNGNAVDAQQRLVHCEHGRR--------AITRSDAD-GQAHLLVGRYA---GKRLNSPNDLIVA------RDGAIWFTD  148 (305)
T ss_dssp             CEEEEEECTTSCEEEEETTTT--------EEEEECTT-SCEEEEECEET---TEECSCCCCEEEC------TTSCEEEEC
T ss_pred             ccceeeECCCCCEEEEECCCC--------EEEEECCC-CCEEEEEeccC---CCccCCCCCEEEC------CCCCEEEeC
Confidence            366788999999999998876        79999986 66432211111   1123457889997      467799998


Q ss_pred             CC-----------------CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEe
Q psy731          208 SG-----------------HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVD  270 (494)
Q Consensus       208 s~-----------------~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD  270 (494)
                      +.                 ..+|..||.++++..++.                                .....+.++++
T Consensus       149 ~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--------------------------------~~~~p~gl~~s  196 (305)
T 3dr2_A          149 PPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--------------------------------DLDHPNGLAFS  196 (305)
T ss_dssp             CSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--------------------------------EESSEEEEEEC
T ss_pred             cCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--------------------------------cCCCCcceEEc
Confidence            62                 357888888888776652                                11124556665


Q ss_pred             eecCCCCCcEEEEecCCC-----CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCce
Q psy731          271 VTSANCDDAFLYIADSGH-----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFR  345 (494)
Q Consensus       271 ~~~~~c~~~~~YI~D~~~-----~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r  345 (494)
                      .     +...+|++|...     ..|.+||+.++.   +.+.....+..             ....+||+++++   |  
T Consensus       197 p-----dg~~lyv~~~~~~~~~~~~i~~~~~~~~~---l~~~~~~~~~~-------------~~~pdgi~~d~~---G--  250 (305)
T 3dr2_A          197 P-----DEQTLYVSQTPEQGHGSVEITAFAWRDGA---LHDRRHFASVP-------------DGLPDGFCVDRG---G--  250 (305)
T ss_dssp             T-----TSSEEEEEECCC---CCCEEEEEEEETTE---EEEEEEEECCS-------------SSCCCSEEECTT---S--
T ss_pred             C-----CCCEEEEEecCCcCCCCCEEEEEEecCCC---ccCCeEEEECC-------------CCCCCeEEECCC---C--
Confidence            3     456899999873     789999988664   21111000000             112466999875   3  


Q ss_pred             eEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeC
Q psy731          346 VMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       346 ~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      .||...-  ..++.+..+    ..        .++.+...   .....++++++.+.||++.-  +++++++.
T Consensus       251 ~lwv~~~--~gv~~~~~~----g~--------~~~~~~~~---~~~~~~~f~~d~~~L~it~~--~~l~~~~~  304 (305)
T 3dr2_A          251 WLWSSSG--TGVCVFDSD----GQ--------LLGHIPTP---GTASNCTFDQAQQRLFITGG--PCLWMLPL  304 (305)
T ss_dssp             CEEECCS--SEEEEECTT----SC--------EEEEEECS---SCCCEEEECTTSCEEEEEET--TEEEEEEC
T ss_pred             CEEEecC--CcEEEECCC----CC--------EEEEEECC---CceeEEEEeCCCCEEEEEcC--CeEEEEEC
Confidence            4888652  235554321    11        11112111   12456777745568888764  57877764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.20  E-value=0.00031  Score=75.35  Aligned_cols=208  Identities=7%  Similarity=0.013  Sum_probs=132.0

Q ss_pred             EcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeE
Q psy731          134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHI  213 (494)
Q Consensus       134 iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~i  213 (494)
                      +|.+++++|...+..        .|.+||..++++++++....     .   ...++++     .+..++|+++.. +.|
T Consensus       145 ~~p~~~~~vs~~~d~--------~V~v~D~~t~~~~~~i~~g~-----~---~~~v~~s-----pdg~~l~v~~~d-~~V  202 (543)
T 1nir_A          145 LDLPNLFSVTLRDAG--------QIALVDGDSKKIVKVIDTGY-----A---VHISRMS-----ASGRYLLVIGRD-ARI  202 (543)
T ss_dssp             CCGGGEEEEEEGGGT--------EEEEEETTTCCEEEEEECST-----T---EEEEEEC-----TTSCEEEEEETT-SEE
T ss_pred             cCCCCEEEEEEcCCC--------eEEEEECCCceEEEEEecCc-----c---cceEEEC-----CCCCEEEEECCC-CeE
Confidence            456778888876655        78899999999999887554     1   2234443     378899999987 999


Q ss_pred             EEEEc--cCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeE
Q psy731          214 VVYNY--RTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHI  291 (494)
Q Consensus       214 IVyd~--~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gl  291 (494)
                      .+||+  .+++.-+-                               +..+.....++++..+ +-++.++|++....+.+
T Consensus       203 ~v~D~~~~t~~~~~~-------------------------------i~~g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v  250 (543)
T 1nir_A          203 DMIDLWAKEPTKVAE-------------------------------IKIGIEARSVESSKFK-GYEDRYTIAGAYWPPQF  250 (543)
T ss_dssp             EEEETTSSSCEEEEE-------------------------------EECCSEEEEEEECCST-TCTTTEEEEEEEESSEE
T ss_pred             EEEECcCCCCcEEEE-------------------------------EecCCCcceEEeCCCc-CCCCCEEEEEEccCCeE
Confidence            99999  66543211                               1112234555654200 01367999999888999


Q ss_pred             EEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCc
Q psy731          292 VVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSL  370 (494)
Q Consensus       292 iVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~  370 (494)
                      .|||.++.+.-+... ..+.         ++++.|.....+.+|+.||++    +.+|+.-....++.-+.++..+..  
T Consensus       251 ~v~D~~t~~~~~~i~~~g~~---------~~~~~~~~~~~v~~i~~s~~~----~~~~vs~~~~g~i~vvd~~~~~~l--  315 (543)
T 1nir_A          251 AIMDGETLEPKQIVSTRGMT---------VDTQTYHPEPRVAAIIASHEH----PEFIVNVKETGKVLLVNYKDIDNL--  315 (543)
T ss_dssp             EEEETTTCCEEEEEECCEEC---------SSSCCEESCCCEEEEEECSSS----SEEEEEETTTTEEEEEECTTSSSC--
T ss_pred             EEEeccccccceeecccCcc---------cCccccccCCceEEEEECCCC----CEEEEEECCCCeEEEEEecCCCcc--
Confidence            999999887655432 1111         111112211236779999873    577776655557777766543211  


Q ss_pred             CccccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeCCCC
Q psy731          371 DFSRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       371 ~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~~~~  421 (494)
                             .+..+. .|  ....++++| .+|. +|.+.-..+.|..||+.+|
T Consensus       316 -------~~~~i~-~~--~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~tg  356 (543)
T 1nir_A          316 -------TVTSIG-AA--PFLHDGGWD-SSHRYFMTAANNSNKVAVIDSKDR  356 (543)
T ss_dssp             -------EEEEEE-CC--SSCCCEEEC-TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             -------eeEEec-cC--cCccCceEC-CCCCEEEEEecCCCeEEEEECCCC
Confidence                   111222 12  234577999 5675 6777778899999999875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.17  E-value=0.00015  Score=71.84  Aligned_cols=141  Identities=13%  Similarity=0.113  Sum_probs=85.6

Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEE-EecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcce
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTE  357 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swr-v~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~l  357 (494)
                      ..+|+++...+.+.|||.++.+--+ |...  .                    -.|+.|+++    +++||.+- .+.++
T Consensus        76 ~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~--------------------~~g~glt~D----g~~l~vs~-gs~~l  128 (266)
T 2iwa_A           76 EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--M--------------------KDGWGLATD----GKILYGSD-GTSIL  128 (266)
T ss_dssp             TEEEEEETTCSEEEEEETTTTEEEEEEECC--S--------------------SSCCEEEEC----SSSEEEEC-SSSEE
T ss_pred             CEEEEEEecCCEEEEEECCCCcEEEEEECC--C--------------------CCeEEEEEC----CCEEEEEC-CCCeE
Confidence            4678887777778888877654211 1111  0                    124667776    36899876 45688


Q ss_pred             EeeechhhcCCCcCccccccceEEecccCC-CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec-
Q psy731          358 FAVTTKVLQNRSLDFSRSNFDFKVMGSRGT-GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED-  435 (494)
Q Consensus       358 y~V~T~~L~~~~~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d-  435 (494)
                      +.+.++-++-        ...++ +|.+|. -...-++.+.  +|.||.+....+.|.+.|+.+|+..     +.+-.. 
T Consensus       129 ~viD~~t~~v--------~~~I~-Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~-----~~I~~~g  192 (266)
T 2iwa_A          129 YEIDPHTFKL--------IKKHN-VKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLL-----GWILLPN  192 (266)
T ss_dssp             EEECTTTCCE--------EEEEE-CEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEE-----EEEECHH
T ss_pred             EEEECCCCcE--------EEEEE-ECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEE-----EEEECCC
Confidence            8887754421        11222 444321 1123466666  5899999989999999999886321     222110 


Q ss_pred             ---------CCeEecccceEEcCCc-eEEEEecCchh
Q psy731          436 ---------NATLIYPSDIRVDRTG-VLWVLSNKLPV  462 (494)
Q Consensus       436 ---------~~~l~~pd~~~id~~g-~Lwvlsnrl~~  462 (494)
                               .+...-|.|++++++| .|||+.-+-++
T Consensus       193 ~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~  229 (266)
T 2iwa_A          193 LRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK  229 (266)
T ss_dssp             HHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE
T ss_pred             cccccccccccccCceEEEEEcCCCCEEEEECCCCCe
Confidence                     1122467899999876 68887655544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.16  E-value=0.00081  Score=64.08  Aligned_cols=59  Identities=10%  Similarity=0.073  Sum_probs=44.9

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHI  225 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~r  225 (494)
                      .|..||+.++++++++.++.     .......++++-     ++.++|+++...+.|.+||+.+++..+
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~~~~~~   70 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIAD-----AGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLG   70 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTT-----CTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEEcCC-----CCCCccceEEcC-----CCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence            78889999999998887665     111245666642     566999999999999999999987644

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.12  E-value=0.00075  Score=64.87  Aligned_cols=208  Identities=11%  Similarity=0.160  Sum_probs=125.3

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEE
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVY  216 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVy  216 (494)
                      .++||+-..+.         .|.++|.. ++...++..+.       .....+.+|      .++.+|+... .++|..|
T Consensus       107 ~~~l~v~t~~~---------~l~~~d~~-g~~~~~~~~~~-------~~~~~~~~~------~~g~l~vgt~-~~~l~~~  162 (330)
T 3hxj_A          107 EDILYVTSMDG---------HLYAINTD-GTEKWRFKTKK-------AIYATPIVS------EDGTIYVGSN-DNYLYAI  162 (330)
T ss_dssp             TTEEEEECTTS---------EEEEECTT-SCEEEEEECSS-------CCCSCCEEC------TTSCEEEECT-TSEEEEE
T ss_pred             CCEEEEEecCC---------EEEEEcCC-CCEEEEEcCCC-------ceeeeeEEc------CCCEEEEEcC-CCEEEEE
Confidence            78899854322         69999998 88777776544       234556664      4667888753 4789999


Q ss_pred             EccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEc
Q psy731          217 NYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNY  296 (494)
Q Consensus       217 d~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl  296 (494)
                      |......|++...                               ......+.+|.      ++.+|++.   .+|..||.
T Consensus       163 d~~g~~~~~~~~~-------------------------------~~~~~~~~~d~------~g~l~v~t---~~l~~~d~  202 (330)
T 3hxj_A          163 NPDGTEKWRFKTN-------------------------------DAITSAASIGK------DGTIYFGS---DKVYAINP  202 (330)
T ss_dssp             CTTSCEEEEEECS-------------------------------SCCCSCCEECT------TCCEEEES---SSEEEECT
T ss_pred             CCCCCEeEEEecC-------------------------------CCceeeeEEcC------CCEEEEEe---CEEEEECC
Confidence            9994445666310                               11233445552      45688987   89999995


Q ss_pred             CCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccc
Q psy731          297 RTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSN  376 (494)
Q Consensus       297 ~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~  376 (494)
                      .....|+.....                    ..+.+++++++     ..||+....+ .++.+..    +..       
T Consensus       203 ~g~~~~~~~~~~--------------------~~~~~~~~~~~-----g~l~v~t~~~-gl~~~~~----~g~-------  245 (330)
T 3hxj_A          203 DGTEKWNFYAGY--------------------WTVTRPAISED-----GTIYVTSLDG-HLYAINP----DGT-------  245 (330)
T ss_dssp             TSCEEEEECCSS--------------------CCCSCCEECTT-----SCEEEEETTT-EEEEECT----TSC-------
T ss_pred             CCcEEEEEccCC--------------------cceeceEECCC-----CeEEEEcCCC-eEEEECC----CCC-------
Confidence            556677765321                    11444666543     3788876544 6666631    111       


Q ss_pred             cceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEE
Q psy731          377 FDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVL  456 (494)
Q Consensus       377 ~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvl  456 (494)
                       .+......  ......+.+| .+|+||++.- ...|.|+|+++  ..    ....... .  .....+.+|.+|.||+.
T Consensus       246 -~~~~~~~~--~~~~~~~~~~-~~g~l~v~t~-~ggl~~~d~~g--~~----~~~~~~~-~--~~~~~~~~d~~g~l~~g  311 (330)
T 3hxj_A          246 -EKWRFKTG--KRIESSPVIG-NTDTIYFGSY-DGHLYAINPDG--TE----KWNFETG-S--WIIATPVIDENGTIYFG  311 (330)
T ss_dssp             -EEEEEECS--SCCCSCCEEC-TTSCEEEECT-TCEEEEECTTS--CE----EEEEECS-S--CCCSCCEECTTCCEEEE
T ss_pred             -EeEEeeCC--CCccccceEc-CCCeEEEecC-CCCEEEECCCC--cE----EEEEEcC-C--ccccceEEcCCCEEEEE
Confidence             11111111  1223456788 8999999865 45899999865  21    1111111 1  23456788899999998


Q ss_pred             ecC
Q psy731          457 SNK  459 (494)
Q Consensus       457 snr  459 (494)
                      +++
T Consensus       312 t~~  314 (330)
T 3hxj_A          312 TRN  314 (330)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            753

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.10  E-value=0.00035  Score=69.12  Aligned_cols=180  Identities=8%  Similarity=0.001  Sum_probs=110.1

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      +++.+|++|...+.|.+||.+++....+..                                ......++++.      +
T Consensus        59 ~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------~~~v~~i~~~~------d  100 (326)
T 2ghs_A           59 ASGTAWWFNILERELHELHLASGRKTVHAL--------------------------------PFMGSALAKIS------D  100 (326)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEEC--------------------------------SSCEEEEEEEE------T
T ss_pred             CCCEEEEEECCCCEEEEEECCCCcEEEEEC--------------------------------CCcceEEEEeC------C
Confidence            457899999999999999999887654421                                01234455553      2


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-----
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-----  353 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-----  353 (494)
                      +-+|++.  ..+|.+||.++++.-++.....  ..          .   ...+..++++|+   |  .+|+..+.     
T Consensus       101 g~l~v~~--~~gl~~~d~~~g~~~~~~~~~~--~~----------~---~~~~~~i~~d~~---G--~l~v~~~~~~~~~  158 (326)
T 2ghs_A          101 SKQLIAS--DDGLFLRDTATGVLTLHAELES--DL----------P---GNRSNDGRMHPS---G--ALWIGTMGRKAET  158 (326)
T ss_dssp             TEEEEEE--TTEEEEEETTTCCEEEEECSST--TC----------T---TEEEEEEEECTT---S--CEEEEEEETTCCT
T ss_pred             CeEEEEE--CCCEEEEECCCCcEEEEeeCCC--CC----------C---CCCCCCEEECCC---C--CEEEEeCCCcCCC
Confidence            3456665  4679999999887655432110  00          0   013567899876   3  48886653     


Q ss_pred             -CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCC--CCccccccce
Q psy731          354 -STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTF--RGEEYNEKSM  429 (494)
Q Consensus       354 -s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~--~~~~~~~~~~  429 (494)
                       ...+|++.+     ..         ++.+-..  .....+++++ .+| .||+++...+.|.+|+.+  +|..+  .+.
T Consensus       159 ~~~~l~~~~~-----g~---------~~~~~~~--~~~~~~i~~s-~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~--~~~  219 (326)
T 2ghs_A          159 GAGSIYHVAK-----GK---------VTKLFAD--ISIPNSICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPT--GKA  219 (326)
T ss_dssp             TCEEEEEEET-----TE---------EEEEEEE--ESSEEEEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBS--SCC
T ss_pred             CceEEEEEeC-----Cc---------EEEeeCC--CcccCCeEEc-CCCCEEEEEECCCCEEEEEEcccccCCcc--cCc
Confidence             246777751     11         1111111  1234588999 556 799999888999999975  43011  112


Q ss_pred             eeeeecCCeEecccceEEcCCceEEEEe
Q psy731          430 GLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       430 ~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      .++..-......|+++.+|.+|.|||.+
T Consensus       220 ~~~~~~~~~~~~p~gi~~d~~G~lwva~  247 (326)
T 2ghs_A          220 EVFIDSTGIKGGMDGSVCDAEGHIWNAR  247 (326)
T ss_dssp             EEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred             eEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence            2332211122468999999999999997

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.09  E-value=0.00097  Score=64.99  Aligned_cols=223  Identities=9%  Similarity=0.019  Sum_probs=133.2

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEE
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVY  216 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVy  216 (494)
                      .+++.+.+.+..        .|.++|.+|++++.++..+.      ....+++.++      .++.+|++  ..+.+.+|
T Consensus         4 ~~~~lv~~~~~~--------~v~~~d~~tG~~~w~~~~~~------~~~~~~~~~~------pdG~ilvs--~~~~V~~~   61 (276)
T 3no2_A            4 PQHLLVGGSGWN--------KIAIINKDTKEIVWEYPLEK------GWECNSVAAT------KAGEILFS--YSKGAKMI   61 (276)
T ss_dssp             CCEEEEECTTCS--------EEEEEETTTTEEEEEEECCT------TCCCCEEEEC------TTSCEEEE--CBSEEEEE
T ss_pred             CCcEEEeeCCCC--------EEEEEECCCCeEEEEeCCCc------cCCCcCeEEC------CCCCEEEe--CCCCEEEE
Confidence            357778877776        89999999999999887653      0234555553      24557774  46789999


Q ss_pred             EccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC-CCeEEEEE
Q psy731          217 NYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG-HNHIVVYN  295 (494)
Q Consensus       217 d~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~-~~gliVyd  295 (494)
                      |.+....|++...                              ....+.+..+.      .++-.++++.. ...++.+|
T Consensus        62 d~~G~~~W~~~~~------------------------------~~~~~~~~~~~------~dG~~lv~~~~~~~~v~~vd  105 (276)
T 3no2_A           62 TRDGRELWNIAAP------------------------------AGCEMQTARIL------PDGNALVAWCGHPSTILEVN  105 (276)
T ss_dssp             CTTSCEEEEEECC------------------------------TTCEEEEEEEC------TTSCEEEEEESTTEEEEEEC
T ss_pred             CCCCCEEEEEcCC------------------------------CCccccccEEC------CCCCEEEEecCCCCEEEEEe
Confidence            9966678888320                              00011122221      23456777776 66788888


Q ss_pred             cCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCcccc
Q psy731          296 YRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRS  375 (494)
Q Consensus       296 l~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~  375 (494)
                      ......|++.-..-...+           +   ....+++.+++   |  .+++.-....+++.+..+    .       
T Consensus       106 ~~Gk~l~~~~~~~~~~~~-----------~---~~~~~v~~~~~---G--~~lv~~~~~~~v~~~d~~----G-------  155 (276)
T 3no2_A          106 MKGEVLSKTEFETGIERP-----------H---AQFRQINKNKK---G--NYLVPLFATSEVREIAPN----G-------  155 (276)
T ss_dssp             TTSCEEEEEEECCSCSSG-----------G---GSCSCCEECTT---S--CEEEEETTTTEEEEECTT----S-------
T ss_pred             CCCCEEEEEeccCCCCcc-----------c---ccccCceECCC---C--CEEEEecCCCEEEEECCC----C-------
Confidence            877778887532111000           0   01223555553   2  333333333344444321    1       


Q ss_pred             ccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec---CCeEecccceEEcCCce
Q psy731          376 NFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED---NATLIYPSDIRVDRTGV  452 (494)
Q Consensus       376 ~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d---~~~l~~pd~~~id~~g~  452 (494)
                       +.+-.++..   ...-+...+ .+|+++++....+.|.++|+++|+.     +-.+...   ..+|.||.++.+..+|.
T Consensus       156 -~~~w~~~~~---~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~-----~w~~~~~~~~~~~l~~~~~~~~~~~G~  225 (276)
T 3no2_A          156 -QLLNSVKLS---GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRI-----VRRVNANDIEGVQLFFVAQLFPLQNGG  225 (276)
T ss_dssp             -CEEEEEECS---SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCE-----EEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred             -CEEEEEECC---CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcE-----EEEecCCCCCCccccccccceEcCCCC
Confidence             111112211   123456777 7899999999888999999996532     1223221   23688999999999999


Q ss_pred             EEEEe
Q psy731          453 LWVLS  457 (494)
Q Consensus       453 Lwvls  457 (494)
                      +||.+
T Consensus       226 i~v~~  230 (276)
T 3no2_A          226 LYICN  230 (276)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99998

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.06  E-value=0.00078  Score=73.11  Aligned_cols=241  Identities=10%  Similarity=0.072  Sum_probs=140.7

Q ss_pred             EcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeE
Q psy731          134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHI  213 (494)
Q Consensus       134 iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~i  213 (494)
                      .|..++++|...+..        .|.++|+.|++++.++....        ....+++.     -+..++|++. ..+.|
T Consensus       163 ~d~~~~~~V~~~~~~--------~V~viD~~t~~v~~~i~~g~--------~p~~v~~S-----pDGr~lyv~~-~dg~V  220 (567)
T 1qks_A          163 WDLENLFSVTLRDAG--------QIALIDGSTYEIKTVLDTGY--------AVHISRLS-----ASGRYLFVIG-RDGKV  220 (567)
T ss_dssp             CCGGGEEEEEETTTT--------EEEEEETTTCCEEEEEECSS--------CEEEEEEC-----TTSCEEEEEE-TTSEE
T ss_pred             cCCCceEEEEeCCCC--------eEEEEECCCCeEEEEEeCCC--------CccceEEC-----CCCCEEEEEc-CCCeE
Confidence            455678888887776        89999999999999887665        12245553     2678999997 45689


Q ss_pred             EEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEE
Q psy731          214 VVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVV  293 (494)
Q Consensus       214 IVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliV  293 (494)
                      .+||+.+++...+..                             ++.+.....+++...++ .++.++|+++...+.+.|
T Consensus       221 ~viD~~~~t~~~v~~-----------------------------i~~G~~P~~ia~s~~~~-pDGk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          221 NMIDLWMKEPTTVAE-----------------------------IKIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             EEEETTSSSCCEEEE-----------------------------EECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEE
T ss_pred             EEEECCCCCCcEeEE-----------------------------EecCCCCceeEEccccC-CCCCEEEEEEccCCeEEE
Confidence            999996222222210                             11223345566652000 146899999999999999


Q ss_pred             EEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCc
Q psy731          294 YNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDF  372 (494)
Q Consensus       294 ydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~  372 (494)
                      +|..+.+--+.-. ..+.         ++++.+...-.+-+|..|+++    ..+|+.-.-+.++.-|..+..++.    
T Consensus       271 iD~~t~~~~~~i~~~~~~---------~~~~~~~p~~rva~i~~s~~~----~~~vv~~~~~g~v~~vd~~~~~~~----  333 (567)
T 1qks_A          271 MDGETLEPKKIQSTRGMT---------YDEQEYHPEPRVAAILASHYR----PEFIVNVKETGKILLVDYTDLNNL----  333 (567)
T ss_dssp             EETTTCCEEEEEECCEEC---------TTTCCEESCCCEEEEEECSSS----SEEEEEETTTTEEEEEETTCSSEE----
T ss_pred             EECCCCcEEEEEeccccc---------cccccccCCCceEEEEEcCCC----CEEEEEecCCCeEEEEecCCCccc----
Confidence            9988876543321 1111         111111111135568888762    456665555557777766543211    


Q ss_pred             cccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecc-cceE-EcC
Q psy731          373 SRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYP-SDIR-VDR  449 (494)
Q Consensus       373 ~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~p-d~~~-id~  449 (494)
                           .+..++ .|  ....++.+| .+| .+|.+.-..|.|..+|+.++ ..    ...+-.. ...-.| .|.. +++
T Consensus       334 -----~v~~i~-~~--~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~-kl----~~~i~vg-g~~Phpg~g~~~~~p  398 (567)
T 1qks_A          334 -----KTTEIS-AE--RFLHDGGLD-GSHRYFITAANARNKLVVIDTKEG-KL----VAIEDTG-GQTPHPGRGANFVHP  398 (567)
T ss_dssp             -----EEEEEE-CC--SSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTT-EE----EEEEECS-SSSBCCTTCEEEEET
T ss_pred             -----eeeeee-cc--ccccCceEC-CCCCEEEEEeCCCCeEEEEECCCC-cE----EEEEecc-CcCCCCccceeeECC
Confidence                 122222 11  123466899 566 56777888999999999874 21    1222110 122334 3443 455


Q ss_pred             C-ceEEEEec
Q psy731          450 T-GVLWVLSN  458 (494)
Q Consensus       450 ~-g~Lwvlsn  458 (494)
                      + |.+|++++
T Consensus       399 ~~g~v~~t~~  408 (567)
T 1qks_A          399 TFGPVWATSH  408 (567)
T ss_dssp             TTEEEEEEEB
T ss_pred             CCCcEEEeCC
Confidence            4 68888763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.02  E-value=7.5e-05  Score=72.01  Aligned_cols=112  Identities=10%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             eeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC
Q psy731          130 VKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG  209 (494)
Q Consensus       130 ~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~  209 (494)
                      ..+.+|..++||+...+.         .|.+|| ++++++.++.++.       .....+.+|      .++.+|++...
T Consensus        23 ~~~~~d~~g~l~v~t~~~---------~l~~~d-~~g~~~~~~~~~~-------~~~~~~~~~------~~g~l~v~t~~   79 (330)
T 3hxj_A           23 SSPILAKNGTIYLGSSNK---------NLYAIN-TDGSVKWFFKSGE-------IIECRPSIG------KDGTIYFGSDK   79 (330)
T ss_dssp             CCCEECTTSCEECSSTTT---------TTEEEC-TTSCEEESSCGGG-------EEEECCEET------TTTEECCSSCE
T ss_pred             cCceEccCCeEEEEcCCC---------EEEEEC-CCCcEEEEEecCC-------CcccceEEe------cCCcEEEecCc
Confidence            456788999999865332         488999 8898876554332       233455554      47789997654


Q ss_pred             CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCC
Q psy731          210 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHN  289 (494)
Q Consensus       210 ~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~  289 (494)
                         |+.||.+....|++...                               .......+++       ++.+|+.. ...
T Consensus        80 ---l~~~d~~g~~~~~~~~~-------------------------------~~~~~~~~~~-------~~~l~v~t-~~~  117 (330)
T 3hxj_A           80 ---VYAINPDGTEKWRFDTK-------------------------------KAIVSDFTIF-------EDILYVTS-MDG  117 (330)
T ss_dssp             ---EEEECCCGGGGGGSCC------------------------------------CCEEEE-------TTEEEEEC-TTS
T ss_pred             ---EEEECCCCcEEEEEECC-------------------------------CCcccCceEE-------CCEEEEEe-cCC
Confidence               99998755555655210                               0011223333       45678864 356


Q ss_pred             eEEEEEcCCCcEEEEec
Q psy731          290 HIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       290 gliVydl~~~~swrv~~  306 (494)
                      +|..||.+....|+...
T Consensus       118 ~l~~~d~~g~~~~~~~~  134 (330)
T 3hxj_A          118 HLYAINTDGTEKWRFKT  134 (330)
T ss_dssp             EEEEECTTSCEEEEEEC
T ss_pred             EEEEEcCCCCEEEEEcC
Confidence            89999998667787763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.01  E-value=0.0024  Score=62.39  Aligned_cols=205  Identities=14%  Similarity=0.041  Sum_probs=131.8

Q ss_pred             eeeeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCcc---ccCCCcccccccCCCceEEeeEEEcCCCeE
Q psy731           64 LPVSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPIL---MPYPSWESNVREARNLTSVVKVQSDPCDRL  140 (494)
Q Consensus        64 ~p~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l---~PYP~~~~n~~~~~~lvsV~~i~iD~~~~L  140 (494)
                      .--|+.+.++++|++-....   .++|..+..+.+          ++   .+.|.-          .--.++.++ .++|
T Consensus        22 ftqGL~~~~~~LyestG~~g---~S~v~~vD~~tg----------kv~~~~~l~~~----------~fgeGi~~~-~~~l   77 (243)
T 3mbr_X           22 FTEGLFYLRGHLYESTGETG---RSSVRKVDLETG----------RILQRAEVPPP----------YFGAGIVAW-RDRL   77 (243)
T ss_dssp             CEEEEEEETTEEEEEECCTT---SCEEEEEETTTC----------CEEEEEECCTT----------CCEEEEEEE-TTEE
T ss_pred             ccccEEEECCEEEEECCCCC---CceEEEEECCCC----------CEEEEEeCCCC----------cceeEEEEe-CCEE
Confidence            34699998999999998753   357888887543          22   123321          112344554 5899


Q ss_pred             EEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC
Q psy731          141 WALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT  220 (494)
Q Consensus       141 wvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~  220 (494)
                      |+++-...        ++.+||++|.++++++..+.     ..     ..+..     ++..+|+|| +.+.|.++|.++
T Consensus        78 y~ltw~~~--------~v~v~D~~tl~~~~ti~~~~-----~G-----wglt~-----dg~~L~vSd-gs~~l~~iDp~t  133 (243)
T 3mbr_X           78 IQLTWRNH--------EGFVYDLATLTPRARFRYPG-----EG-----WALTS-----DDSHLYMSD-GTAVIRKLDPDT  133 (243)
T ss_dssp             EEEESSSS--------EEEEEETTTTEEEEEEECSS-----CC-----CEEEE-----CSSCEEEEC-SSSEEEEECTTT
T ss_pred             EEEEeeCC--------EEEEEECCcCcEEEEEeCCC-----Cc-----eEEee-----CCCEEEEEC-CCCeEEEEeCCC
Confidence            99986665        89999999999999998765     11     22222     467899999 688999999988


Q ss_pred             CceeEE---ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731          221 NDSHII---HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR  297 (494)
Q Consensus       221 ~~~~rv---~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~  297 (494)
                      .+..+-   ..+.+                            +-..++.+.       |.++.+|...-..+.|.|.|.+
T Consensus       134 ~~~~~~I~V~~~g~----------------------------~~~~lNeLe-------~~~G~lyanvw~s~~I~vIDp~  178 (243)
T 3mbr_X          134 LQQVGSIKVTAGGR----------------------------PLDNLNELE-------WVNGELLANVWLTSRIARIDPA  178 (243)
T ss_dssp             CCEEEEEECEETTE----------------------------ECCCEEEEE-------EETTEEEEEETTTTEEEEECTT
T ss_pred             CeEEEEEEEccCCc----------------------------ccccceeeE-------EeCCEEEEEECCCCeEEEEECC
Confidence            765433   11000                            111223222       3357799888778899999999


Q ss_pred             CCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          298 TNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       298 ~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      +++--..-. ....++...  .   +  ..-.+-.+|||++|.    .+.||..-=.=.++|.|.-
T Consensus       179 tG~V~~~idl~~l~~~~~~--~---~--~~~~~vlNGIA~d~~----~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          179 SGKVVAWIDLQALVPDADA--L---T--DSTNDVLNGIAFDAE----HDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             TCBEEEEEECGGGSTTTTS--C---C--CTTSSCEEEEEEETT----TTEEEEEETTCSEEEEEEE
T ss_pred             CCCEEEEEECCcCcccccc--c---c--CCcCCceEEEEEcCC----CCEEEEECCCCCcEEEEEE
Confidence            998655543 223322100  0   0  001134799999986    3688886555558888864

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.00  E-value=0.0024  Score=64.69  Aligned_cols=84  Identities=6%  Similarity=0.001  Sum_probs=54.3

Q ss_pred             CceEEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEE-EcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          125 NLTSVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFF-QLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~-~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      +|.....|..+++++ |||.+.+ .        +|.+++. +++....+ .+|. +.......+.+++++-.  --.+++
T Consensus        16 ~l~~P~~i~~~pdG~~l~V~e~~-G--------~i~~~~~-~g~~~~~~~~~~~-v~~~g~~g~~gia~~pd--f~~~g~   82 (353)
T 2g8s_A           16 KLDHPWALAFLPDNHGMLITLRG-G--------ELRHWQA-GKGLSAPLSGVPD-VWAHGQGGLLDVVLAPD--FAQSRR   82 (353)
T ss_dssp             EESSEEEEEECSTTCCEEEEETT-T--------EEEEEET-TTEECCCCBSCCC-CCCSTTCSEEEEEECTT--HHHHCE
T ss_pred             CCCCcEEEEEcCCCCEEEEEeCC-c--------eEEEEeC-CCceeeEecCCcc-cccCCCCCceeEEECCC--CCCCCE
Confidence            577788999999999 9999974 2        6888885 34332111 1332 22334567788888520  001689


Q ss_pred             EEEeeCC-------CCeEEEEEccCC
Q psy731          203 LYIADSG-------HNHIVVYNYRTN  221 (494)
Q Consensus       203 vYItDs~-------~~~iIVyd~~~~  221 (494)
                      +|++++.       ...|..|+++.+
T Consensus        83 lYv~~~~~~~~g~~~~~v~r~~~~~~  108 (353)
T 2g8s_A           83 IWLSYSEVGDDGKAGTAVGYGRLSDD  108 (353)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEECTT
T ss_pred             EEEEEeCCCCCCCceeEEEEEEECCC
Confidence            9999875       346777777654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.00  E-value=0.0014  Score=64.85  Aligned_cols=214  Identities=13%  Similarity=0.059  Sum_probs=133.3

Q ss_pred             CCeeeeeeeeC-CcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccc--cCCCcccccccCCCceEEeeEEEcCCC
Q psy731           62 NCLPVSLDKWH-DRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILM--PYPSWESNVREARNLTSVVKVQSDPCD  138 (494)
Q Consensus        62 ~~~p~gv~v~~-gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~--PYP~~~~n~~~~~~lvsV~~i~iD~~~  138 (494)
                      ..-|.|+++.. |++|++-..+.   -.+|.+|....+    .     .+.  |.|.          -....++..+ .+
T Consensus        20 ~~f~~Gl~~~~dg~Lyvstg~~~---~s~v~~iD~~tg----~-----v~~~i~l~~----------~~fgeGi~~~-g~   76 (266)
T 2iwa_A           20 YAFTQGLVYAENDTLFESTGLYG---RSSVRQVALQTG----K-----VENIHKMDD----------SYFGEGLTLL-NE   76 (266)
T ss_dssp             TCCEEEEEECSTTEEEEEECSTT---TCEEEEEETTTC----C-----EEEEEECCT----------TCCEEEEEEE-TT
T ss_pred             CCCcccEEEeCCCeEEEECCCCC---CCEEEEEECCCC----C-----EEEEEecCC----------CcceEEEEEe-CC
Confidence            34678999964 99999986542   257888886543    1     121  1221          1122356665 46


Q ss_pred             eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcC-CCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEE
Q psy731          139 RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLK-EKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYN  217 (494)
Q Consensus       139 ~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp-~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd  217 (494)
                      +||+++-...        .+.+||+.|.++++++..+ .     ..     ..+..     +...+|+|| +.+.|.|+|
T Consensus        77 ~lyv~t~~~~--------~v~viD~~t~~v~~~i~~g~~-----~g-----~glt~-----Dg~~l~vs~-gs~~l~viD  132 (266)
T 2iwa_A           77 KLYQVVWLKN--------IGFIYDRRTLSNIKNFTHQMK-----DG-----WGLAT-----DGKILYGSD-GTSILYEID  132 (266)
T ss_dssp             EEEEEETTCS--------EEEEEETTTTEEEEEEECCSS-----SC-----CEEEE-----CSSSEEEEC-SSSEEEEEC
T ss_pred             EEEEEEecCC--------EEEEEECCCCcEEEEEECCCC-----Ce-----EEEEE-----CCCEEEEEC-CCCeEEEEE
Confidence            9999998776        8999999999999998876 3     11     11221     467899999 788999999


Q ss_pred             ccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcC
Q psy731          218 YRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYR  297 (494)
Q Consensus       218 ~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~  297 (494)
                      .++.+.-+-=                       .+.+  --.+...++.+...       ++.+|++....+.|.|.|.+
T Consensus       133 ~~t~~v~~~I-----------------------~Vg~--~~~p~~~~nele~~-------dg~lyvn~~~~~~V~vID~~  180 (266)
T 2iwa_A          133 PHTFKLIKKH-----------------------NVKY--NGHRVIRLNELEYI-------NGEVWANIWQTDCIARISAK  180 (266)
T ss_dssp             TTTCCEEEEE-----------------------ECEE--TTEECCCEEEEEEE-------TTEEEEEETTSSEEEEEETT
T ss_pred             CCCCcEEEEE-----------------------EECC--CCcccccceeEEEE-------CCEEEEecCCCCeEEEEECC
Confidence            9886643320                       0000  00011123434332       35799998888999999999


Q ss_pred             CCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731          298 TNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL  365 (494)
Q Consensus       298 ~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L  365 (494)
                      +++.-+.-. ....++...     .+  ..-.+..+|||++|+    ++.||..--...++|.|...-.
T Consensus       181 tg~V~~~I~~~g~~~~~~~-----~~--~~~~~v~nGIa~~~~----~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          181 DGTLLGWILLPNLRKKLID-----EG--FRDIDVLNGIAWDQE----NKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             TCCEEEEEECHHHHHHHHH-----TT--CTTCCCEEEEEEETT----TTEEEEEETTCSEEEEEEEEEC
T ss_pred             CCcEEEEEECCCccccccc-----cc--ccccCceEEEEEcCC----CCEEEEECCCCCeEEEEEEecc
Confidence            987533322 111110000     00  000134689999987    3689997766779999987655

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=97.99  E-value=0.0027  Score=68.02  Aligned_cols=231  Identities=11%  Similarity=0.156  Sum_probs=131.9

Q ss_pred             CCEEEEEECCCCcEEEEEEcCCCcc----ccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCc
Q psy731          155 PPSVQVYDLRQQMQIRFFQLKEKTD----YTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNY  230 (494)
Q Consensus       155 ~Pklv~~dl~t~~vi~~~~lp~~~~----~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~  230 (494)
                      ++.+.+||..|.++++++..+....    ..+.+....+++.     ..+.++|++....+.|.++|+.+++.-++..  
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s-----~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~--  319 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS-----HEHPEFIVNVKETGKVLLVNYKDIDNLTVTS--  319 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEEC-----SSSSEEEEEETTTTEEEEEECTTSSSCEEEE--
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEEC-----CCCCEEEEEECCCCeEEEEEecCCCcceeEE--
Confidence            3478899999999999888643100    0123344445543     2467899999999999999998876433210  


Q ss_pred             cccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcc
Q psy731          231 LHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLH  310 (494)
Q Consensus       231 ~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~  310 (494)
                                                 ......+.++.++.     ++.|+|++....+.|.|+|.++++--....-.-.
T Consensus       320 ---------------------------i~~~~~~~~~~~sp-----dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~  367 (543)
T 1nir_A          320 ---------------------------IGAAPFLHDGGWDS-----SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKT  367 (543)
T ss_dssp             ---------------------------EECCSSCCCEEECT-----TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             ---------------------------eccCcCccCceECC-----CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCC
Confidence                                       11123355666663     4678999988889999999999875443322222


Q ss_pred             cCCCCcceEEcCEEeeeecceeeee-eccCCCCCceeEEEee-CCCc--ceEeeechhhcCCCcCccccccceEEecccC
Q psy731          311 FDPLFGDFTIGGVNFQWQTGIHGMS-LSPLTRDNFRVMYFHP-LAST--TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRG  386 (494)
Q Consensus       311 ~dP~~~~~~v~G~~f~~~~Gi~gIa-Lsp~~~~g~r~LYf~p-lss~--~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G  386 (494)
                      |.|..              |   ++ .+|+    ++.+|..+ +...  .++.+.+.  ..+    +...+-++.+--.|
T Consensus       368 ph~g~--------------g---~~~~~p~----~g~~~~s~~~~d~~V~v~d~~~~--~~~----~~~~~~v~~l~~~g  420 (543)
T 1nir_A          368 PHPGR--------------G---ANFVHPK----YGPVWSTSHLGDGSISLIGTDPK--NHP----QYAWKKVAELQGQG  420 (543)
T ss_dssp             BCCTT--------------C---EEEEETT----TEEEEEEEBSSSSEEEEEECCTT--TCT----TTBTSEEEEEECSC
T ss_pred             CCCCC--------------C---cccCCCC----CccEEEeccCCCceEEEEEeCCC--CCc----hhcCeEEEEEEcCC
Confidence            22211              1   22 2444    25677765 3333  34444331  000    01112233332111


Q ss_pred             CCCCCCeEEeeCCCCeEEEec-cC-----CCeEEEEeCCCCccccccceeee--eec---CCeEecccceEEcCCc-eEE
Q psy731          387 TGSQSGASSLDEETGVIFYAL-LV-----KSGVGCWNTFRGEEYNEKSMGLV--AED---NATLIYPSDIRVDRTG-VLW  454 (494)
Q Consensus       387 ~~~qs~g~~~D~~~G~ly~~~-~~-----~~aI~~w~~~~~~~~~~~~~~~v--~~d---~~~l~~pd~~~id~~g-~Lw  454 (494)
                        ..+-.+++.|+...||.+. ++     .+.|..||.++++.    -.+++  .+-   .+.-.++-.+.+.++| +||
T Consensus       421 --~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~  494 (543)
T 1nir_A          421 --GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA----KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW  494 (543)
T ss_dssp             --SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTS----CCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred             --CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCC----CeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence              2345688886555777764 23     45999999987421    11222  100   0112467788898888 789


Q ss_pred             EEe
Q psy731          455 VLS  457 (494)
Q Consensus       455 vls  457 (494)
                      +..
T Consensus       495 ~s~  497 (543)
T 1nir_A          495 FSV  497 (543)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.95  E-value=0.0016  Score=63.67  Aligned_cols=211  Identities=13%  Similarity=0.089  Sum_probs=129.2

Q ss_pred             cEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC--CCCeEEEEEccCCceeEEecCccccCCCCCccccCC
Q psy731          167 MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS--GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG  244 (494)
Q Consensus       167 ~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs--~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g  244 (494)
                      +++++|+.+.      .+|-+.+.+|       ++.+|++--  +...|-++|+++|+.-+-..                
T Consensus        10 ~v~~~~phd~------~~ftqGL~~~-------~~~LyestG~~g~S~v~~vD~~tgkv~~~~~----------------   60 (243)
T 3mbr_X           10 RVVKRYPHDT------TAFTEGLFYL-------RGHLYESTGETGRSSVRKVDLETGRILQRAE----------------   60 (243)
T ss_dssp             EEEEEEECCT------TCCEEEEEEE-------TTEEEEEECCTTSCEEEEEETTTCCEEEEEE----------------
T ss_pred             EEEEEcCCCC------ccccccEEEE-------CCEEEEECCCCCCceEEEEECCCCCEEEEEe----------------
Confidence            4688886654      6788999986       378999954  45689999999998866511                


Q ss_pred             ccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEE
Q psy731          245 EYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVN  324 (494)
Q Consensus       245 ~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~  324 (494)
                                   +.+..+-..++++       +..+|+.+-..+-+.|||.++.+--+             .|..    
T Consensus        61 -------------l~~~~fgeGi~~~-------~~~ly~ltw~~~~v~v~D~~tl~~~~-------------ti~~----  103 (243)
T 3mbr_X           61 -------------VPPPYFGAGIVAW-------RDRLIQLTWRNHEGFVYDLATLTPRA-------------RFRY----  103 (243)
T ss_dssp             -------------CCTTCCEEEEEEE-------TTEEEEEESSSSEEEEEETTTTEEEE-------------EEEC----
T ss_pred             -------------CCCCcceeEEEEe-------CCEEEEEEeeCCEEEEEECCcCcEEE-------------EEeC----
Confidence                         1111111345554       35689998778889999988765321             1111    


Q ss_pred             eeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCC-CCCCCeEEeeCCCCeE
Q psy731          325 FQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGT-GSQSGASSLDEETGVI  403 (494)
Q Consensus       325 f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~~G~l  403 (494)
                           +--|.+|+++    ++.||.+-- |.+++-+.++-++-        ...++ +++.|. -...-.+...  +|.|
T Consensus       104 -----~~~Gwglt~d----g~~L~vSdg-s~~l~~iDp~t~~~--------~~~I~-V~~~g~~~~~lNeLe~~--~G~l  162 (243)
T 3mbr_X          104 -----PGEGWALTSD----DSHLYMSDG-TAVIRKLDPDTLQQ--------VGSIK-VTAGGRPLDNLNELEWV--NGEL  162 (243)
T ss_dssp             -----SSCCCEEEEC----SSCEEEECS-SSEEEEECTTTCCE--------EEEEE-CEETTEECCCEEEEEEE--TTEE
T ss_pred             -----CCCceEEeeC----CCEEEEECC-CCeEEEEeCCCCeE--------EEEEE-EccCCcccccceeeEEe--CCEE
Confidence                 1134666665    368998765 55788887665421        12222 232221 1122234443  7899


Q ss_pred             EEeccCCCeEEEEeCCCCccccccceeeeeec-----CCeEecccceEEcCC-ceEEEEecCchhhh
Q psy731          404 FYALLVKSGVGCWNTFRGEEYNEKSMGLVAED-----NATLIYPSDIRVDRT-GVLWVLSNKLPVFL  464 (494)
Q Consensus       404 y~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d-----~~~l~~pd~~~id~~-g~Lwvlsnrl~~~~  464 (494)
                      |......+.|.+.|+.+|.....-.+.-+..+     .+...=|+||+.|++ +.|||+--+.|+..
T Consensus       163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~  229 (243)
T 3mbr_X          163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLY  229 (243)
T ss_dssp             EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEE
Confidence            98888999999999998742211111101100     112235789999975 47898887777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.93  E-value=0.0013  Score=67.45  Aligned_cols=85  Identities=15%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             CCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC-CccccccceeeeeecCCeEecccceEEcC-CceEEEEe--cCchhhh
Q psy731          389 SQSGASSLDEETGVIFYALLVKSGVGCWNTFR-GEEYNEKSMGLVAEDNATLIYPSDIRVDR-TGVLWVLS--NKLPVFL  464 (494)
Q Consensus       389 ~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~-~~~~~~~~~~~v~~d~~~l~~pd~~~id~-~g~Lwvls--nrl~~~~  464 (494)
                      ..+-|++++|....||+++...+.|.+++-+. | .+  .+.+++ .- +  .+||++++|. +|.|||.+  +..+.+.
T Consensus       221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g-~l--~~~~~~-~~-~--g~PDGi~vD~e~G~lwva~~~~g~~v~~  293 (355)
T 3sre_A          221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANW-TL--TPLRVL-SF-D--TLVDNISVDPVTGDLWVGCHPNGMRIFF  293 (355)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS-CE--EEEEEE-EC-S--SEEEEEEECTTTCCEEEEEESCHHHHHS
T ss_pred             cccCcceECCCCCEEEEEeCCCCeEEEEEECCCC-cE--ecCEEE-eC-C--CCCceEEEeCCCCcEEEEecCCceEEEE
Confidence            45789999954559999999999999999653 1 22  233343 21 2  5799999999 59999965  3344444


Q ss_pred             cCCCCCCcccEEEEEEec
Q psy731          465 YSKLKPEDINVRIFKSTV  482 (494)
Q Consensus       465 ~~~~~~~~~nfrI~r~~~  482 (494)
                      ++-.  ...+-.|+|++.
T Consensus       294 ~~P~--~~~~s~v~rI~~  309 (355)
T 3sre_A          294 YDAE--NPPGSEVLRIQD  309 (355)
T ss_dssp             CCTT--SCCCEEEEEEEC
T ss_pred             ECCC--CCCCCEEEEEEc
Confidence            3221  245778888874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=97.89  E-value=0.0022  Score=66.61  Aligned_cols=119  Identities=14%  Similarity=0.049  Sum_probs=78.8

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC--------
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS--------  208 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs--------  208 (494)
                      ..++||.|.+...    ..-.|.++|+.|++++.++....        ... +++.     .+..++|++++        
T Consensus        44 ~~~vyV~~~~~~~----~~~~V~ViD~~t~~v~~~I~vG~--------~P~-va~s-----pDG~~lyVan~~~~r~~~G  105 (386)
T 3sjl_D           44 ARRVYVNDPAHFA----AVTQQFVIDGEAGRVIGMIDGGF--------LPN-PVVA-----DDGSFIAHASTVFSRIARG  105 (386)
T ss_dssp             TTEEEEEECGGGC----SSEEEEEEETTTTEEEEEEEECS--------SCE-EEEC-----TTSSCEEEEEEEEEETTEE
T ss_pred             CCEEEEEcCcccC----CCCEEEEEECCCCeEEEEEECCC--------CCc-EEEC-----CCCCEEEEEcccccccccC
Confidence            4589999997210    00189999999999999887654        113 6664     37889999985        


Q ss_pred             -CCCeEEEEEccCCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          209 -GHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       209 -~~~~iIVyd~~~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                       ..+.|-|||.++++.-+ |.                        +....-...+.....++++.     ++.++|++..
T Consensus       106 ~~~~~VsviD~~t~~v~~~I~------------------------v~~g~r~~~g~~P~~~a~sp-----DGk~lyVan~  156 (386)
T 3sjl_D          106 ERTDYVEVFDPVTLLPTADIE------------------------LPDAPRFLVGTYPWMTSLTP-----DGKTLLFYQF  156 (386)
T ss_dssp             EEEEEEEEECTTTCCEEEEEE------------------------ETTCCCCCBSCCGGGEEECT-----TSSEEEEEEC
T ss_pred             CCCCEEEEEECCCCeEEEEEE------------------------CCCccccccCCCCceEEEcC-----CCCEEEEEEc
Confidence             24579999999987533 21                        00000000112344556653     4689999987


Q ss_pred             C-CCeEEEEEcCCCcEE
Q psy731          287 G-HNHIVVYNYRTNDSH  302 (494)
Q Consensus       287 ~-~~gliVydl~~~~sw  302 (494)
                      . .+.+-|.|.++++--
T Consensus       157 ~~~~~VsVID~~t~~vv  173 (386)
T 3sjl_D          157 SPAPAVGVVDLEGKAFK  173 (386)
T ss_dssp             SSSCEEEEEETTTTEEE
T ss_pred             CCCCeEEEEECCCCcEE
Confidence            5 688999999998753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=97.87  E-value=0.0049  Score=59.02  Aligned_cols=123  Identities=10%  Similarity=0.055  Sum_probs=75.4

Q ss_pred             eeeeee-eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCe-EEE
Q psy731           65 PVSLDK-WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDR-LWA  142 (494)
Q Consensus        65 p~gv~v-~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~-Lwv  142 (494)
                      .+|++. .++++|++-..     ..+|..+....+         ..+.-++.        .....+..+.++++++ ||+
T Consensus         2 ~~g~~~~~~~~~~v~~~~-----~~~v~~~d~~~~---------~~~~~~~~--------~~~~~~~~~~~s~dg~~~~v   59 (349)
T 1jmx_B            2 DTGPALKAGHEYMIVTNY-----PNNLHVVDVASD---------TVYKSCVM--------PDKFGPGTAMMAPDNRTAYV   59 (349)
T ss_dssp             --CCCCCTTCEEEEEEET-----TTEEEEEETTTT---------EEEEEEEC--------SSCCSSCEEEECTTSSEEEE
T ss_pred             CccccccCCCEEEEEeCC-----CCeEEEEECCCC---------cEEEEEec--------CCCCCCceeEECCCCCEEEE
Confidence            456766 46788887744     246777765322         11111111        0001245667777775 888


Q ss_pred             EeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-----------CC
Q psy731          143 LDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----------HN  211 (494)
Q Consensus       143 lD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----------~~  211 (494)
                      ...+..        .|.+||+.++++++++.++... .........++++     .++.++|+++..           .+
T Consensus        60 ~~~~~~--------~i~~~d~~t~~~~~~~~~~~~~-~~~~~~~~~~~~s-----pdg~~l~~~~~~~~~~~~~~~~~~~  125 (349)
T 1jmx_B           60 LNNHYG--------DIYGIDLDTCKNTFHANLSSVP-GEVGRSMYSFAIS-----PDGKEVYATVNPTQRLNDHYVVKPP  125 (349)
T ss_dssp             EETTTT--------EEEEEETTTTEEEEEEESCCST-TEEEECSSCEEEC-----TTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             EeCCCC--------cEEEEeCCCCcEEEEEEccccc-ccccccccceEEC-----CCCCEEEEEcccccccccccccCCC
Confidence            876554        7999999999999988875410 0002234566664     256789998854           57


Q ss_pred             eEEEEEccCCce
Q psy731          212 HIVVYNYRTNDS  223 (494)
Q Consensus       212 ~iIVyd~~~~~~  223 (494)
                      .|.+||+.+++.
T Consensus       126 ~i~~~d~~~~~~  137 (349)
T 1jmx_B          126 RLEVFSTADGLE  137 (349)
T ss_dssp             EEEEEEGGGGGG
T ss_pred             eEEEEECCCccc
Confidence            899999988654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.87  E-value=0.0041  Score=68.92  Aligned_cols=240  Identities=14%  Similarity=0.148  Sum_probs=132.4

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCcc--ccccCCccceEEEeecCCCCCcE-EE
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTD--YTEESKFSNMVVDVTSANCDNAF-LY  204 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~--~~~~S~l~d~vVD~~~~~c~~~~-vY  204 (494)
                      .|..+..|..+.|||--.+.         -|..||..+++..+ |..+....  .-....+..+..|      .++. +|
T Consensus       358 ~V~~i~~d~~g~lWiGt~~~---------Gl~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~i~~d------~~g~~lW  421 (795)
T 4a2l_A          358 VVSCIVEDKDKNLWIGTNDG---------GLNLYNPITQRFTS-YTLQEDESARGIGSNNIKAVYVD------EKKSLVY  421 (795)
T ss_dssp             SEEEEEECTTSCEEEEESSS---------CEEEECTTTCCEEE-ECCC------CCSCSCEEEEEEE------TTTTEEE
T ss_pred             eeEEEEECCCCCEEEEECCC---------CeEEEcCCCCcEEE-EecCCCCcccCCCCccEEEEEEc------CCCCEEE
Confidence            47888999999999943322         38889988887654 43221000  0012233444454      3556 88


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      |.= ..++|.+||.++++.+++.+.    +|                    .  ........|..|.      ++.++|+
T Consensus       422 igt-~~~Gl~~~d~~~~~~~~~~~~----~~--------------------~--l~~~~v~~i~~d~------~g~lwig  468 (795)
T 4a2l_A          422 IGT-HAGGLSILHRNSGQVENFNQR----NS--------------------Q--LVNENVYAILPDG------EGNLWLG  468 (795)
T ss_dssp             EEE-TTTEEEEEETTTCCEEEECTT----TS--------------------C--CSCSCEEEEEECS------SSCEEEE
T ss_pred             EEe-CcCceeEEeCCCCcEEEeecC----CC--------------------C--cCCCeeEEEEECC------CCCEEEE
Confidence            863 346899999999998887321    11                    0  0111234455552      3557887


Q ss_pred             cCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeee--c
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVT--T  362 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~--T  362 (494)
                      -.  .||.+||.++++..++.+.   .+|..  +  .      ..-+..|+.+++     ..|++....+  +|+..  +
T Consensus       469 t~--~Gl~~~~~~~~~~~~~~~~---~~~~~--~--~------~~~i~~i~~d~~-----g~lWigt~~G--l~~~~~~~  526 (795)
T 4a2l_A          469 TL--SALVRFNPEQRSFTTIEKE---KDGTP--V--V------SKQITTLFRDSH-----KRLWIGGEEG--LSVFKQEG  526 (795)
T ss_dssp             ES--SCEEEEETTTTEEEECCBC---TTCCB--C--C------CCCEEEEEECTT-----CCEEEEESSC--EEEEEEET
T ss_pred             ec--CceeEEeCCCCeEEEcccc---ccccc--c--C------CceEEEEEECCC-----CCEEEEeCCc--eEEEeCCC
Confidence            53  7999999998765554432   11100  0  0      122555666543     3788876643  55443  2


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeE--e
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATL--I  440 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l--~  440 (494)
                      ..+   .+....     ..-+-  +.....++..| .+|+|+++...  +|.+||++++ .+     ...... ..|  .
T Consensus       527 ~~~---~~~~~~-----~~~~l--~~~~i~~i~~d-~~g~lWigT~~--Gl~~~d~~~~-~~-----~~~~~~-~gl~~~  586 (795)
T 4a2l_A          527 LDI---QKASIL-----PVSNV--TKLFTNCIYEA-SNGIIWVGTRE--GFYCFNEKDK-QI-----KRYNTT-NGLPNN  586 (795)
T ss_dssp             TEE---EECCCS-----CSCGG--GGSCEEEEEEC-TTSCEEEEESS--CEEEEETTTT-EE-----EEECGG-GTCSCS
T ss_pred             CeE---EEecCC-----CCCCC--CCCeeEEEEEC-CCCCEEEEeCC--CceeECCCCC-cE-----EEeCCC-CCCchh
Confidence            221   000000     00000  01223467788 89999998764  9999999873 22     222111 111  0


Q ss_pred             cccceEEcCCceEEEEec
Q psy731          441 YPSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       441 ~pd~~~id~~g~Lwvlsn  458 (494)
                      ...++..|.+|.||+.++
T Consensus       587 ~i~~i~~d~~g~lWi~t~  604 (795)
T 4a2l_A          587 VVYGILEDSFGRLWLSTN  604 (795)
T ss_dssp             CEEEEEECTTSCEEEEET
T ss_pred             heEEEEECCCCCEEEEcC
Confidence            123567799999999985

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.87  E-value=0.0098  Score=63.18  Aligned_cols=79  Identities=13%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             EEEEeCCCCCCCCCCCCEEEEEECCC-----CcEEEEEEcCCCccccccCCccceEEEee-cCC--CCCcEEEEeeCCCC
Q psy731          140 LWALDSGVVEGKMEQPPSVQVYDLRQ-----QMQIRFFQLKEKTDYTEESKFSNMVVDVT-SAN--CDNAFLYIADSGHN  211 (494)
Q Consensus       140 LwvlD~G~~~~~~~~~Pklv~~dl~t-----~~vi~~~~lp~~~~~~~~S~l~d~vVD~~-~~~--c~~~~vYItDs~~~  211 (494)
                      +|.++.+..   ...+-.|..+|+..     +|++++.++|...--...+..|--.--+- ...  -++.++|++--..+
T Consensus        30 ~~~~~~~~~---~~~~d~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~  106 (462)
T 2ece_A           30 VACLYTGTG---INRADFIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSS  106 (462)
T ss_dssp             EEEECTTTT---CCCCCEEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTC
T ss_pred             EEeeccCCC---CCCCCeEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCC
Confidence            456666544   22455899999998     89999999988211111111110000000 012  35899999999999


Q ss_pred             eEEEEEccCC
Q psy731          212 HIVVYNYRTN  221 (494)
Q Consensus       212 ~iIVyd~~~~  221 (494)
                      .|.|+|.+++
T Consensus       107 ~I~viD~~t~  116 (462)
T 2ece_A          107 RIYIIDTKPN  116 (462)
T ss_dssp             CEEEEECCSC
T ss_pred             eEEEEECCCC
Confidence            9999999876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.85  E-value=0.0012  Score=66.43  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=76.8

Q ss_pred             CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC---------
Q psy731          138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS---------  208 (494)
Q Consensus       138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs---------  208 (494)
                      .++||.|.|...   ...-.+.+||+.+++++.++....        .- .++++     .+..++|+++.         
T Consensus        16 ~~~yv~~~~~~~---~~d~~v~v~D~~t~~~~~~i~~g~--------~p-~i~~s-----pdg~~lyv~~~~~~~~~~g~   78 (361)
T 2oiz_A           16 NRIYVMDSVFMH---LTESRVHVYDYTNGKFLGMVPTAF--------NG-HVQVS-----NDGKKIYTMTTYHERITRGK   78 (361)
T ss_dssp             GEEEEEECCGGG---GGGCEEEEEETTTCCEEEEEECCE--------EE-EEEEC-----TTSSEEEEEEEEETTSSSSC
T ss_pred             CEEEEECCCCCc---cccCeEEEEECCCCeEEEEecCCC--------CC-ceEEC-----CCCCEEEEEEecccccccCC
Confidence            478899987642   112278999999999988765322        12 45553     36889999985         


Q ss_pred             CCCeEEEEEccCCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          209 GHNHIVVYNYRTNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      ..+.|.|||..+++..+ +.-                        .. .....+.....++++.     +..++|++...
T Consensus        79 ~~~~v~v~d~~t~~~~~~i~~------------------------~~-~~~~~g~~p~~i~~sp-----dg~~l~v~n~~  128 (361)
T 2oiz_A           79 RSDVVEVWDADKLTFEKEISL------------------------PP-KRVQGLNYDGLFRQTT-----DGKFIVLQNAS  128 (361)
T ss_dssp             EEEEEEEEETTTCCEEEEEEE------------------------CT-TBCCBCCCGGGEEECT-----TSSEEEEEEES
T ss_pred             CCCEEEEEECcCCcEEEEEEc------------------------Cc-cccccCCCcceEEECC-----CCCEEEEECCC
Confidence            23569999998766533 210                        00 0001122345667763     46899999865


Q ss_pred             -CCeEEEEEcCCCcEEE
Q psy731          288 -HNHIVVYNYRTNDSHI  303 (494)
Q Consensus       288 -~~gliVydl~~~~swr  303 (494)
                       .+.|.|||.++++.-+
T Consensus       129 ~~~~v~v~d~~~~~~~~  145 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVE  145 (361)
T ss_dssp             SSEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCcEEE
Confidence             6789999999886544

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.81  E-value=0.0029  Score=62.67  Aligned_cols=208  Identities=13%  Similarity=0.034  Sum_probs=127.5

Q ss_pred             eeeeeeCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEEEEeC
Q psy731           66 VSLDKWHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWALDS  145 (494)
Q Consensus        66 ~gv~v~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~LwvlD~  145 (494)
                      -|+.+.++++|++-...  |.   |..+..+.+    +.  -..+  .|.-          .-..++.++ .++||+++-
T Consensus        58 qGL~~~~~~Ly~stG~~--g~---v~~iD~~Tg----kv--~~~~--l~~~----------~FgeGit~~-g~~Ly~ltw  113 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQ--GT---LRQLSLESA----QP--VWME--RLGN----------IFAEGLASD-GERLYQLTW  113 (268)
T ss_dssp             EEEEEETTEEEEEETTT--TE---EEECCSSCS----SC--SEEE--ECTT----------CCEEEEEEC-SSCEEEEES
T ss_pred             ceEEEECCEEEEEcCCC--CE---EEEEECCCC----cE--EeEE--CCCC----------cceeEEEEe-CCEEEEEEc
Confidence            68888899999998774  22   777765543    10  1111  2221          112345565 569999976


Q ss_pred             CCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeE
Q psy731          146 GVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHI  225 (494)
Q Consensus       146 G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~r  225 (494)
                      ...        ++.+||++|.++++++..+.     ...   .+.-       ++..+|+|| +.+.|.++|.++.+..+
T Consensus       114 ~~~--------~v~V~D~~Tl~~~~ti~~~~-----eGw---GLt~-------Dg~~L~vSd-Gs~~l~~iDp~T~~v~~  169 (268)
T 3nok_A          114 TEG--------LLFTWSGMPPQRERTTRYSG-----EGW---GLCY-------WNGKLVRSD-GGTMLTFHEPDGFALVG  169 (268)
T ss_dssp             SSC--------EEEEEETTTTEEEEEEECSS-----CCC---CEEE-------ETTEEEEEC-SSSEEEEECTTTCCEEE
T ss_pred             cCC--------EEEEEECCcCcEEEEEeCCC-----cee---EEec-------CCCEEEEEC-CCCEEEEEcCCCCeEEE
Confidence            655        89999999999999998765     111   2222       357899999 68899999988876544


Q ss_pred             EecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEe
Q psy731          226 IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIH  305 (494)
Q Consensus       226 v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~  305 (494)
                      -=             .+          .  .--.+-..++.+.       |.++.+|+..-..+.|.|.|.++++.-+.-
T Consensus       170 ~I-------------~V----------~--~~g~~v~~lNeLe-------~~dG~lyanvw~s~~I~vIDp~TG~V~~~I  217 (268)
T 3nok_A          170 AV-------------QV----------K--LRGQPVELINELE-------CANGVIYANIWHSSDVLEIDPATGTVVGVI  217 (268)
T ss_dssp             EE-------------EC----------E--ETTEECCCEEEEE-------EETTEEEEEETTCSEEEEECTTTCBEEEEE
T ss_pred             EE-------------Ee----------C--CCCcccccccccE-------EeCCEEEEEECCCCeEEEEeCCCCcEEEEE
Confidence            30             00          0  0000111233332       235679988877889999999999865554


Q ss_pred             cC-CcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh
Q psy731          306 HN-YLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV  364 (494)
Q Consensus       306 ~~-~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~  364 (494)
                      .- ...++....       .....+-.+|||++|+    .+.||..==.=.++|.|.-++
T Consensus       218 dl~~L~~~~~~~-------~~~~~~vlNGIA~dp~----~~rlfVTGK~Wp~~~ev~~~~  266 (268)
T 3nok_A          218 DASALTRAVAGQ-------VTNPEAVLNGIAVEPG----SGRIFMTGKLWPRLFEVRLDV  266 (268)
T ss_dssp             ECHHHHHHHTTT-------CCCTTCCEEEEEECTT----TCCEEEEETTCSEEEEEEEEE
T ss_pred             ECCCCccccccc-------ccCcCCceEEEEEcCC----CCEEEEeCCCCCceEEEEEEe
Confidence            32 122110000       0001134799999986    368888544444888887644

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.80  E-value=0.0032  Score=69.77  Aligned_cols=261  Identities=12%  Similarity=0.123  Sum_probs=147.5

Q ss_pred             eEEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          127 TSVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       127 vsV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      ..|..+..|..++ |||--.+.         -|.+||.++++..+ |.....  .-+...+..+..|      .++.+||
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~---------Gl~~~d~~~~~~~~-~~~~~~--~l~~~~v~~i~~d------~~g~lwi  467 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAG---------GLSILHRNSGQVEN-FNQRNS--QLVNENVYAILPD------GEGNLWL  467 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTT---------EEEEEETTTCCEEE-ECTTTS--CCSCSCEEEEEEC------SSSCEEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcC---------ceeEEeCCCCcEEE-eecCCC--CcCCCeeEEEEEC------CCCCEEE
Confidence            3577888999999 99853322         58999999988654 432210  0112233444443      4678999


Q ss_pred             eeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          206 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       206 tDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                      +-.  .+|.+||..+++..++...   .+|                    ..+ .......|..|.      ++.++|+-
T Consensus       468 gt~--~Gl~~~~~~~~~~~~~~~~---~~~--------------------~~~-~~~~i~~i~~d~------~g~lWigt  515 (795)
T 4a2l_A          468 GTL--SALVRFNPEQRSFTTIEKE---KDG--------------------TPV-VSKQITTLFRDS------HKRLWIGG  515 (795)
T ss_dssp             EES--SCEEEEETTTTEEEECCBC---TTC--------------------CBC-CCCCEEEEEECT------TCCEEEEE
T ss_pred             Eec--CceeEEeCCCCeEEEcccc---ccc--------------------ccc-CCceEEEEEECC------CCCEEEEe
Confidence            865  6899999999877666321   000                    000 112244555552      46688876


Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL  365 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L  365 (494)
                      .  .||.+||.++++. ++.+....  +  + +        ....+.+|+.+++     ..|++....  .+++...+- 
T Consensus       516 ~--~Gl~~~~~~~~~~-~~~~~~~~--~--~-l--------~~~~i~~i~~d~~-----g~lWigT~~--Gl~~~d~~~-  571 (795)
T 4a2l_A          516 E--EGLSVFKQEGLDI-QKASILPV--S--N-V--------TKLFTNCIYEASN-----GIIWVGTRE--GFYCFNEKD-  571 (795)
T ss_dssp             S--SCEEEEEEETTEE-EECCCSCS--C--G-G--------GGSCEEEEEECTT-----SCEEEEESS--CEEEEETTT-
T ss_pred             C--CceEEEeCCCCeE-EEecCCCC--C--C-C--------CCCeeEEEEECCC-----CCEEEEeCC--CceeECCCC-
Confidence            4  7999999998875 54432100  0  0 0        0123666777543     367776654  455554210 


Q ss_pred             cCCCcCccccccceEEecc-cCC-CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEe---
Q psy731          366 QNRSLDFSRSNFDFKVMGS-RGT-GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLI---  440 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~-~G~-~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~---  440 (494)
                                 ..|+.+.. .|. .....++..| ++|+|+++-  .++|.++|++++ .     +...... +.|.   
T Consensus       572 -----------~~~~~~~~~~gl~~~~i~~i~~d-~~g~lWi~t--~~Gl~~~~~~~~-~-----~~~~~~~-dGl~~~~  630 (795)
T 4a2l_A          572 -----------KQIKRYNTTNGLPNNVVYGILED-SFGRLWLST--NRGISCFNPETE-K-----FRNFTES-DGLQSNQ  630 (795)
T ss_dssp             -----------TEEEEECGGGTCSCSCEEEEEEC-TTSCEEEEE--TTEEEEEETTTT-E-----EEEECGG-GTCSCSC
T ss_pred             -----------CcEEEeCCCCCCchhheEEEEEC-CCCCEEEEc--CCceEEEcCCCC-c-----EEEcCCc-CCCcccc
Confidence                       12232322 221 1223467789 899999997  589999999873 2     2222221 1111   


Q ss_pred             -cccceEEcCCceEEEEec-CchhhhcCCC--CCCcccEEEEEEec
Q psy731          441 -YPSDIRVDRTGVLWVLSN-KLPVFLYSKL--KPEDINVRIFKSTV  482 (494)
Q Consensus       441 -~pd~~~id~~g~Lwvlsn-rl~~~~~~~~--~~~~~nfrI~r~~~  482 (494)
                       ...++..+.+|.||+.++ .+-.|.-..+  +...++..|-.+.+
T Consensus       631 f~~~~~~~~~~G~l~~g~~~Gl~~~~p~~~~~~~~~~~v~it~~~v  676 (795)
T 4a2l_A          631 FNTASYCRTSVGQMYFGGINGITTFRPELLLDNPYTPPVVITKLQL  676 (795)
T ss_dssp             EEEEEEEECTTSCEEEEETTEEEEECGGGCCCCCCCCCEEEEEEEE
T ss_pred             CccCceeECCCCeEEEecCCceEEEcHHHccccCCCCCeEEEEEEE
Confidence             124566788999999973 3433322222  23345666666554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.80  E-value=0.0022  Score=63.38  Aligned_cols=206  Identities=10%  Similarity=0.043  Sum_probs=127.9

Q ss_pred             cEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC--CCeEEEEEccCCceeEEecCccccCCCCCccccCC
Q psy731          167 MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG--HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGG  244 (494)
Q Consensus       167 ~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~--~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g  244 (494)
                      +++++|+.+.      ..|-+.+.++       ++.+|++...  ...|.++|+++|+.-+--.                
T Consensus        32 ~vv~~~phd~------~~ftqGL~~~-------~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~----------------   82 (262)
T 3nol_A           32 QIVHSYPHDT------KAFTEGFFYR-------NGYFYESTGLNGRSSIRKVDIESGKTLQQIE----------------   82 (262)
T ss_dssp             EEEEEEECCT------TCEEEEEEEE-------TTEEEEEEEETTEEEEEEECTTTCCEEEEEE----------------
T ss_pred             EEEEEecCCC------CcccceEEEE-------CCEEEEECCCCCCceEEEEECCCCcEEEEEe----------------
Confidence            4688886544      5677888875       3589998754  4589999999998755410                


Q ss_pred             ccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEE
Q psy731          245 EYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVN  324 (494)
Q Consensus       245 ~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~  324 (494)
                                   +.+.-+-.+|+++       +..+|+.+-..+-+.|||.++.+--+             .|.     
T Consensus        83 -------------l~~~~FgeGit~~-------g~~ly~ltw~~~~v~v~D~~t~~~~~-------------ti~-----  124 (262)
T 3nol_A           83 -------------LGKRYFGEGISDW-------KDKIVGLTWKNGLGFVWNIRNLRQVR-------------SFN-----  124 (262)
T ss_dssp             -------------CCTTCCEEEEEEE-------TTEEEEEESSSSEEEEEETTTCCEEE-------------EEE-----
T ss_pred             -------------cCCccceeEEEEe-------CCEEEEEEeeCCEEEEEECccCcEEE-------------EEE-----
Confidence                         1111111345665       35789998778889999998766321             111     


Q ss_pred             eeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCC-CCCCCeEEeeCCCCeE
Q psy731          325 FQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGT-GSQSGASSLDEETGVI  403 (494)
Q Consensus       325 f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~~G~l  403 (494)
                          .+-.|.+|+++    ++.||-+-- +.+++.+.++-++-        ...++ ++..|. -.....+...  +|.|
T Consensus       125 ----~~~eG~glt~d----g~~L~~SdG-s~~i~~iDp~T~~v--------~~~I~-V~~~g~~~~~lNELe~~--~G~l  184 (262)
T 3nol_A          125 ----YDGEGWGLTHN----DQYLIMSDG-TPVLRFLDPESLTP--------VRTIT-VTAHGEELPELNELEWV--DGEI  184 (262)
T ss_dssp             ----CSSCCCCEEEC----SSCEEECCS-SSEEEEECTTTCSE--------EEEEE-CEETTEECCCEEEEEEE--TTEE
T ss_pred             ----CCCCceEEecC----CCEEEEECC-CCeEEEEcCCCCeE--------EEEEE-eccCCccccccceeEEE--CCEE
Confidence                11245677765    368988764 45787776654421        12222 222211 1111235554  6899


Q ss_pred             EEeccCCCeEEEEeCCCCccccccceeeeeec---------CCeEecccceEEcCCc-eEEEEecCchhhh
Q psy731          404 FYALLVKSGVGCWNTFRGEEYNEKSMGLVAED---------NATLIYPSDIRVDRTG-VLWVLSNKLPVFL  464 (494)
Q Consensus       404 y~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d---------~~~l~~pd~~~id~~g-~Lwvlsnrl~~~~  464 (494)
                      |.+....+.|.+.|+.+|...     +.+-..         .+...=|+||++|+++ .|||+--+.|+..
T Consensus       185 yan~w~~~~I~vIDp~tG~V~-----~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~  250 (262)
T 3nol_A          185 FANVWQTNKIVRIDPETGKVT-----GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVF  250 (262)
T ss_dssp             EEEETTSSEEEEECTTTCBEE-----EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred             EEEEccCCeEEEEECCCCcEE-----EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceE
Confidence            999999999999999987321     222110         1122457899999754 7888887777644

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=97.80  E-value=0.0093  Score=60.76  Aligned_cols=117  Identities=9%  Similarity=-0.116  Sum_probs=72.0

Q ss_pred             CeEEEEeC-CCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-------
Q psy731          138 DRLWALDS-GVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-------  209 (494)
Q Consensus       138 ~~LwvlD~-G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-------  209 (494)
                      .++||.|. +...  ..   .|.+||+.+++++.++....        .- .+++.-     ++.++|++++.       
T Consensus        33 ~~~yv~~~~~~~~--~~---~v~v~D~~t~~~~~~i~~g~--------~p-~i~~sp-----Dg~~lyv~n~~~~~~~rg   93 (373)
T 2mad_H           33 RRSYINLPAHHSA--II---QQWVLDAGSGSILGHVNGGF--------LP-NPVAAH-----SGSEFALASTSFSRIAKG   93 (373)
T ss_pred             CEEEEeCCcccCC--cc---EEEEEECCCCeEEEEecCCC--------CC-CeEECC-----CCCEEEEEeccccccccC
Confidence            57899988 6541  11   78999999999988665322        22 666642     78999999862       


Q ss_pred             --CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          210 --HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       210 --~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                        .+.|.|||.++.+...--             .+.|..         .. ..+.....++++.     +..++|++...
T Consensus        94 ~~~~~v~viD~~t~~~~~~i-------------~~~~~~---------~~-~~g~~p~~~~~sp-----DG~~l~v~n~~  145 (373)
T 2mad_H           94 KRTDYVEVFDPVTFLPIADI-------------ELPDAP---------RF-DVGPYSWMNANTP-----NNADLLFFQFA  145 (373)
T ss_pred             CCCCeEEEEECCCCcEEEEE-------------ECCCcc---------cc-ccCCCccceEECC-----CCCEEEEEecC
Confidence              456889999876553220             000000         00 0011233455543     46788988764


Q ss_pred             -CCeEEEEEcCCCcEE
Q psy731          288 -HNHIVVYNYRTNDSH  302 (494)
Q Consensus       288 -~~gliVydl~~~~sw  302 (494)
                       .+.|.|+| ++++.-
T Consensus       146 ~~~~v~viD-~t~~~~  160 (373)
T 2mad_H          146 AGPAVGLVV-QGGSSD  160 (373)
T ss_pred             CCCeEEEEE-CCCCEE
Confidence             57788899 887653

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.77  E-value=0.0099  Score=60.84  Aligned_cols=297  Identities=11%  Similarity=0.097  Sum_probs=157.5

Q ss_pred             CCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          123 ARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       123 ~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      .++|....+|.++++++|||.+....        +|.+++..+++......+|+ +.......+.+++++-.  --.+++
T Consensus        28 a~gL~~P~~ia~~pdG~llVter~~G--------~I~~v~~~~g~~~~v~~~~~-v~~~g~~GllGia~~Pd--f~~~g~   96 (347)
T 3das_A           28 ATGLNSPWGLAPLPGGDLLVSSRDEA--------TITRVDAKTGRKTELGEVPG-VSPSGEGGLLGIALSPD--YASDHM   96 (347)
T ss_dssp             ECCCSSEEEEEECTTSCEEEEETTTC--------EEEEECTTTCCEEEEEECTT-CCCBTTBSEEEEEECTT--HHHHCE
T ss_pred             ecCCCCceEEEEcCCCcEEEEEecCC--------EEEEEECCCCcEeeecccCc-eeecCCCCceeeEeccc--cccCCE
Confidence            46788899999999999999997555        78889887776644445665 34556788899998620  002567


Q ss_pred             EEEeeC--CCCeEEEEEccCCce--eEEecCccccCCCCCccccCCccceeee-ecccccccccccceeeEEeeecCCCC
Q psy731          203 LYIADS--GHNHIVVYNYRTNDS--HIIHHNYLHFDPLFGDFTIGGEYSEFFQ-LKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       203 vYItDs--~~~~iIVyd~~~~~~--~rv~~~~~~~dp~~~~f~i~g~~~~~f~-l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      +|++.+  ..+.|..|.+..+..  -++                 ++...+|+ ++.    .....-..|+++.      
T Consensus        97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~-----------------~~~~~i~~~~p~----~~~H~g~~l~fgp------  149 (347)
T 3das_A           97 VYAYFTSASDNRIVRMLYDEKKPSGEQL-----------------GAPDTVFRGIPK----GVIHNGGRIAFGP------  149 (347)
T ss_dssp             EEEEEECSSSEEEEEEEBCTTSCTTCCB-----------------CCCEEEEEEECC----CSSCCCCCEEECT------
T ss_pred             EEEEEecCCCCEEEEEEeCCCCcccccC-----------------CCcEEEEEcCCC----CCCccCccccCCC------
Confidence            787654  445676666654321  000                 01111222 110    1112234566653      


Q ss_pred             CcEEEEec--CCCCeEEEE--EcCCCcEEEEecCCcccCCCCcceEEcCEEeee-ecceeeeeeccCCCCCceeEEEeeC
Q psy731          278 DAFLYIAD--SGHNHIVVY--NYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQW-QTGIHGMSLSPLTRDNFRVMYFHPL  352 (494)
Q Consensus       278 ~~~~YI~D--~~~~gliVy--dl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~-~~Gi~gIaLsp~~~~g~r~LYf~pl  352 (494)
                      ++++||+-  .+... .--  +...++.||+.-..--|  ....| .+.+-+.+ .-+..||+++|+   |  .||++-.
T Consensus       150 DG~Lyvt~Gd~~~~~-~~qd~~~~~G~IlRi~~dG~ip--~~nPf-~~~~i~a~G~RNp~Gla~dp~---G--~L~~~d~  220 (347)
T 3das_A          150 DKMLYAGTGESGDTG-LSQDRKSLGGKILRMTPDGEPA--PGNPF-PGSPVYSYGHRNVQGLAWDDK---Q--RLFASEF  220 (347)
T ss_dssp             TSCEEEECBCTTCGG-GTTCTTCSTTCEEEECTTSSBC--TTCSS-TTCCEEEBCCSBCCEEEECTT---C--CEEEEEC
T ss_pred             CCCEEEEECCCCCCc-cccCCCCCCCEEEEEeCCCCcc--CCCCC-CCCeEEeeCCCCcceEEECCC---C--CEEEEec
Confidence            46788883  21110 000  12356777776432111  01111 01111111 123578999874   3  6888554


Q ss_pred             CC---cceEeeechhhcCCCcC---------ccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          353 AS---TTEFAVTTKVLQNRSLD---------FSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       353 ss---~~ly~V~T~~L~~~~~~---------~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..   ..+..|..-    ...-         ......-+..++.-  .....||++.  +|.+|.+.+....|.+...+.
T Consensus       221 g~~~~deln~i~~G----~nyGwP~~~g~~~~~~~~~P~~~~~~~--~~ap~G~~~~--~g~~~~~~l~~~~l~~v~~~~  292 (347)
T 3das_A          221 GQDTWDELNAIKPG----DNYGWPEAEGKGGGSGFHDPVAQWSTD--EASPSGIAYA--EGSVWMAGLRGERLWRIPLKG  292 (347)
T ss_dssp             CSSSCEEEEEECTT----CBCCTTTCCSSCCCTTCCCCSEEECTT--TCCEEEEEEE--TTEEEEEESTTCSEEEEEEET
T ss_pred             CCCCCceeeEEcCC----CEecCCcccCCCCCccccCCcEecCCC--CCCCcceEEE--cCceeeccccCCEEEEEEecC
Confidence            33   234444211    0100         01111222333311  0234688887  699999999999999887654


Q ss_pred             CccccccceeeeeecCCeEecccceEEcCCceEEEEecCchhhhcCCCCCCcccEEEEEEec
Q psy731          421 GEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNKLPVFLYSKLKPEDINVRIFKSTV  482 (494)
Q Consensus       421 ~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~  482 (494)
                      +....  ..+.+..+  ...=|.++.+++||.|||++++-.    ++-++.+-.=||+|+.+
T Consensus       293 ~~~~~--~~e~~l~~--~~gR~~dv~~~pDG~lyv~td~~~----g~g~p~~~ddri~r~~~  346 (347)
T 3das_A          293 TAAAA--DPQAFLEG--EYGRLRTVAPAGGDKLWLVTSNTD----GRGDAKGGDDRILELEV  346 (347)
T ss_dssp             TEESS--CCEEESTT--TSSCEEEEEEEETTEEEEEECTTS----SSSCCCTTCSCEEEEEE
T ss_pred             Cceec--ceEEeecC--CCCCccEEEECCCCcEEEEEcCCC----CCCCCCCCCCEEEEEeC
Confidence            21110  11223332  112378999999999999986543    22233333447777764

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.77  E-value=0.0091  Score=62.86  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=62.7

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccc-cccCCccceEEEeecCCCCCcE
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDY-TEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~-~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      ++|...-+|.++++++|||.+....        +|++++..+++......+++.... .....|.+++++-  .-..+++
T Consensus        24 ~~l~~P~~~a~~pdG~l~V~e~~gg--------~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~P--df~~~g~   93 (454)
T 1cru_A           24 SNLNKPHALLWGPDNQIWLTERATG--------KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPY   93 (454)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTC--------EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCE
T ss_pred             CCCCCceEEEEcCCCcEEEEEcCCC--------EEEEEECCCCcEeEEecCCccccccCCCCceeEEEECC--CcCcCCE
Confidence            4688888999999999999997654        799998877776555667762111 2456777888862  1223789


Q ss_pred             EEEeeCC------------CCeEEEEEccCC
Q psy731          203 LYIADSG------------HNHIVVYNYRTN  221 (494)
Q Consensus       203 vYItDs~------------~~~iIVyd~~~~  221 (494)
                      +|++++.            ...|..|+++.+
T Consensus        94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~  124 (454)
T 1cru_A           94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKS  124 (454)
T ss_dssp             EEEEEEEECTTC--CCSCEEEEEEEEEEETT
T ss_pred             EEEEEeccccCCCccccccccEEEEEEECCC
Confidence            9999874            346777776543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.76  E-value=0.00066  Score=67.34  Aligned_cols=209  Identities=10%  Similarity=0.039  Sum_probs=129.2

Q ss_pred             cEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCcc
Q psy731          167 MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEY  246 (494)
Q Consensus       167 ~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~  246 (494)
                      +++++|..+.      ..|-+.+.++       ++.+|++....+.|-++|+++|+.-+--   +               
T Consensus        44 ~Vv~~~phd~------~~ftqGL~~~-------~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l---------------   92 (268)
T 3nok_A           44 HIIREYPHAT------NAFTQGLVFH-------QGHFFESTGHQGTLRQLSLESAQPVWME---R---------------   92 (268)
T ss_dssp             EEEEEEECCT------TCCEEEEEEE-------TTEEEEEETTTTEEEECCSSCSSCSEEE---E---------------
T ss_pred             EEEEEEcCCC------ccccceEEEE-------CCEEEEEcCCCCEEEEEECCCCcEEeEE---C---------------
Confidence            5688886654      5677888875       4799999999888999999999875541   1               


Q ss_pred             ceeeeecccccccccccc-eeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEe
Q psy731          247 SEFFQLKEKTDYTEESKF-SNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNF  325 (494)
Q Consensus       247 ~~~f~l~~~~~~~~~s~~-~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f  325 (494)
                                  .+ ..| .+++++       +..+|+.+-..+-+.|||.++.+--+             .|.+     
T Consensus        93 ------------~~-~~FgeGit~~-------g~~Ly~ltw~~~~v~V~D~~Tl~~~~-------------ti~~-----  134 (268)
T 3nok_A           93 ------------LG-NIFAEGLASD-------GERLYQLTWTEGLLFTWSGMPPQRER-------------TTRY-----  134 (268)
T ss_dssp             ------------CT-TCCEEEEEEC-------SSCEEEEESSSCEEEEEETTTTEEEE-------------EEEC-----
T ss_pred             ------------CC-CcceeEEEEe-------CCEEEEEEccCCEEEEEECCcCcEEE-------------EEeC-----
Confidence                        11 112 235554       34689998778889999998766321             1111     


Q ss_pred             eeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCC-CCCCCeEEeeCCCCeEE
Q psy731          326 QWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGT-GSQSGASSLDEETGVIF  404 (494)
Q Consensus       326 ~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~~G~ly  404 (494)
                          +-.|.+|+++    ++.||.+-- +.+++.+.++-++-        ...++ ++..|. -.....+...  +|.||
T Consensus       135 ----~~eGwGLt~D----g~~L~vSdG-s~~l~~iDp~T~~v--------~~~I~-V~~~g~~v~~lNeLe~~--dG~ly  194 (268)
T 3nok_A          135 ----SGEGWGLCYW----NGKLVRSDG-GTMLTFHEPDGFAL--------VGAVQ-VKLRGQPVELINELECA--NGVIY  194 (268)
T ss_dssp             ----SSCCCCEEEE----TTEEEEECS-SSEEEEECTTTCCE--------EEEEE-CEETTEECCCEEEEEEE--TTEEE
T ss_pred             ----CCceeEEecC----CCEEEEECC-CCEEEEEcCCCCeE--------EEEEE-eCCCCcccccccccEEe--CCEEE
Confidence                1124666665    368999874 55888887665421        12222 232221 1122344554  78999


Q ss_pred             EeccCCCeEEEEeCCCCccccccceeeeee-----cCCeEecccceEEcCCc-eEEEEecCchhhh
Q psy731          405 YALLVKSGVGCWNTFRGEEYNEKSMGLVAE-----DNATLIYPSDIRVDRTG-VLWVLSNKLPVFL  464 (494)
Q Consensus       405 ~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~-----d~~~l~~pd~~~id~~g-~Lwvlsnrl~~~~  464 (494)
                      .+....+.|.+.|+++|.....-.+.-+..     ......=|+||+.|+++ .|||+--+.|+.+
T Consensus       195 anvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~  260 (268)
T 3nok_A          195 ANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLF  260 (268)
T ss_dssp             EEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEE
T ss_pred             EEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceE
Confidence            999899999999999874221111110100     00112357899999855 7888766666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=0.0031  Score=69.80  Aligned_cols=232  Identities=16%  Similarity=0.180  Sum_probs=136.5

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ..|..+..|..++||+--.+.         .|.+||.++++..+ +..+.    .+...+..+..|      .++.+||+
T Consensus       407 ~~v~~i~~d~~g~lWigt~~~---------Gl~~~~~~~~~~~~-~~~~~----~~~~~v~~i~~d------~~g~lwig  466 (781)
T 3v9f_A          407 NSVLCSLKDSEGNLWFGTYLG---------NISYYNTRLKKFQI-IELEK----NELLDVRVFYED------KNKKIWIG  466 (781)
T ss_dssp             SBEEEEEECTTSCEEEEETTE---------EEEEECSSSCEEEE-CCSTT----TCCCCEEEEEEC------TTSEEEEE
T ss_pred             cceEEEEECCCCCEEEEeccC---------CEEEEcCCCCcEEE-eccCC----CCCCeEEEEEEC------CCCCEEEE
Confidence            357888899999999943222         58999998887643 33211    122334445454      57889998


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      -.  .+|.+||..+++..++....-                        ... .......|..|.      ++.++|+-.
T Consensus       467 t~--~Gl~~~~~~~~~~~~~~~~~~------------------------~~~-~~~~i~~i~~d~------~g~lWigt~  513 (781)
T 3v9f_A          467 TH--AGVFVIDLASKKVIHHYDTSN------------------------SQL-LENFVRSIAQDS------EGRFWIGTF  513 (781)
T ss_dssp             ET--TEEEEEESSSSSCCEEECTTT------------------------SSC-SCSCEEEEEECT------TCCEEEEES
T ss_pred             EC--CceEEEeCCCCeEEecccCcc------------------------ccc-ccceeEEEEEcC------CCCEEEEEc
Confidence            65  789999999988766632110                        000 012345566663      456788742


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcce-Eeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTE-FAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~l-y~V~T~~L  365 (494)
                       +.||..||.++++..++.+..--  |              ..-|..|+.+++     ..|++....+  + ++...+  
T Consensus       514 -~~Gl~~~~~~~~~~~~~~~~~~l--~--------------~~~i~~i~~d~~-----g~lWi~T~~G--lv~~~d~~--  567 (781)
T 3v9f_A          514 -GGGVGIYTPDMQLVRKFNQYEGF--C--------------SNTINQIYRSSK-----GQMWLATGEG--LVCFPSAR--  567 (781)
T ss_dssp             -SSCEEEECTTCCEEEEECTTTTC--S--------------CSCEEEEEECTT-----SCEEEEETTE--EEEESCTT--
T ss_pred             -CCCEEEEeCCCCeEEEccCCCCC--C--------------CCeeEEEEECCC-----CCEEEEECCC--ceEEECCC--
Confidence             46899999988765555431100  0              122566776543     3678766533  4 444221  


Q ss_pred             cCCCcCccccccceEEecc-cCC-CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEe---
Q psy731          366 QNRSLDFSRSNFDFKVMGS-RGT-GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLI---  440 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~-~G~-~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~---  440 (494)
                       .         ..++.+.. .|. .....++..| ++|+|+++-  .++|.|++++++ .     +...... +.|.   
T Consensus       568 -~---------~~~~~~~~~~gl~~~~i~~i~~d-~~g~lW~~t--~~Gl~~~~~~~~-~-----~~~~~~~-dGl~~~~  627 (781)
T 3v9f_A          568 -N---------FDYQVFQRKEGLPNTHIRAISED-KNGNIWAST--NTGISCYITSKK-C-----FYTYDHS-NNIPQGS  627 (781)
T ss_dssp             -T---------CCCEEECGGGTCSCCCCCEEEEC-SSSCEEEEC--SSCEEEEETTTT-E-----EEEECGG-GTCCSSC
T ss_pred             -C---------CcEEEccccCCCCCceEEEEEEC-CCCCEEEEc--CCceEEEECCCC-c-----eEEeccc-CCccccc
Confidence             0         12333332 221 1234678899 899999996  678999999873 2     2222211 1111   


Q ss_pred             -cccceEEcCCceEEEEe
Q psy731          441 -YPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       441 -~pd~~~id~~g~Lwvls  457 (494)
                       .+..+..+++|.||+-+
T Consensus       628 f~~~~~~~~~~G~l~~g~  645 (781)
T 3v9f_A          628 FISGCVTKDHNGLIYFGS  645 (781)
T ss_dssp             EEEEEEEECTTSCEEEEE
T ss_pred             cccCceEECCCCEEEEEC
Confidence             13456678899999987

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.70  E-value=0.0028  Score=65.23  Aligned_cols=69  Identities=9%  Similarity=-0.141  Sum_probs=52.0

Q ss_pred             CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC---------
Q psy731          138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS---------  208 (494)
Q Consensus       138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs---------  208 (494)
                      .++||.+.+...   ... .+.++|+.|+++++++..+..        - .++++     .+..++|++++         
T Consensus        32 ~~~yV~~~~~~~---~~d-~vsvID~~t~~v~~~i~vG~~--------P-~i~~s-----pDg~~lyVan~~~~r~~~G~   93 (368)
T 1mda_H           32 RRSHITLPAYFA---GTT-ENWVSCAGCGVTLGHSLGAFL--------S-LAVAG-----HSGSDFALASTSFARSAKGK   93 (368)
T ss_dssp             TEEEEEECTTTC---SSE-EEEEEETTTTEEEEEEEECTT--------C-EEEEC-----TTSSCEEEEEEEETTTTSSS
T ss_pred             CeEEEECCccCC---ccc-eEEEEECCCCeEEEEEeCCCC--------C-ceEEC-----CCCCEEEEEcccccccccCC
Confidence            589999887541   111 788999999999999987661        1 46664     27889999995         


Q ss_pred             CCCeEEEEEccCCcee
Q psy731          209 GHNHIVVYNYRTNDSH  224 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~  224 (494)
                      ..+.|-|+|+.+++.-
T Consensus        94 ~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           94 RTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             EEEEEEEECTTTCCEE
T ss_pred             CCCEEEEEECCCCCEE
Confidence            3578999999998863

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.67  E-value=0.019  Score=56.21  Aligned_cols=116  Identities=9%  Similarity=0.139  Sum_probs=79.5

Q ss_pred             eeeeeee--CCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEEE
Q psy731           65 PVSLDKW--HDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLWA  142 (494)
Q Consensus        65 p~gv~v~--~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~Lwv  142 (494)
                      +.|++..  ++++|+..=.     +..|.+++.+ +         ..++-.|-        .++-...+|.++..+++||
T Consensus        29 lSGla~~~~~~~L~aV~d~-----~~~I~~ld~~-g---------~v~~~i~l--------~g~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           29 ISSLTWSAQSNTLFSTINK-----PAAIVEMTTN-G---------DLIRTIPL--------DFVKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             EEEEEEETTTTEEEEEEET-----TEEEEEEETT-C---------CEEEEEEC--------SSCSSEEEEEECSTTEEEE
T ss_pred             cceeEEeCCCCEEEEEECC-----CCeEEEEeCC-C---------CEEEEEec--------CCCCChHHeEEeCCCEEEE
Confidence            8899995  6789887633     6678888864 2         13333332        2345577888889999999


Q ss_pred             EeCCCCCCCCCCCCEEEEEECCCCc---EEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCC-eEEEEE
Q psy731          143 LDSGVVEGKMEQPPSVQVYDLRQQM---QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHN-HIVVYN  217 (494)
Q Consensus       143 lD~G~~~~~~~~~Pklv~~dl~t~~---vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~-~iIVyd  217 (494)
                      .|-+..        .|.+|++.++.   .+.++.++- .....+..+..+++|-     ....+|++--... +|+.|+
T Consensus        86 s~E~~~--------~l~~~~v~~~~~i~~~~~~~~~~-~~~~~N~g~EGLA~d~-----~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A           86 SDERDY--------AIYVISLTPNSEVKILKKIKIPL-QESPTNCGFEGLAYSR-----QDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             EETTTT--------EEEEEEECTTCCEEEEEEEECCC-SSCCCSSCCEEEEEET-----TTTEEEEEEESSSEEEEEEE
T ss_pred             EECCCC--------cEEEEEcCCCCeeeeeeeecccc-ccccccCCcceEEEeC-----CCCEEEEEECcCCceEEEEc
Confidence            988775        78888877654   457776653 1234677788999874     4557777766555 677766

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=97.62  E-value=0.013  Score=56.98  Aligned_cols=126  Identities=6%  Similarity=-0.030  Sum_probs=82.7

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .+..+.++++|++++  .+..        .+..||. +++++.++..+..      ..+.+..+.      .++.++|++
T Consensus        38 ~~~~~~~~pdG~ilv--s~~~--------~V~~~d~-~G~~~W~~~~~~~------~~~~~~~~~------~dG~~lv~~   94 (276)
T 3no2_A           38 ECNSVAATKAGEILF--SYSK--------GAKMITR-DGRELWNIAAPAG------CEMQTARIL------PDGNALVAW   94 (276)
T ss_dssp             CCCEEEECTTSCEEE--ECBS--------EEEEECT-TSCEEEEEECCTT------CEEEEEEEC------TTSCEEEEE
T ss_pred             CCcCeEECCCCCEEE--eCCC--------CEEEECC-CCCEEEEEcCCCC------ccccccEEC------CCCCEEEEe
Confidence            356667888999999  2222        6999999 8999999987641      122333332      467889999


Q ss_pred             CC-CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~-~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      ++ ...++.+|.+....|++.-..                         ....+......+.++.      ++-.++++.
T Consensus        95 ~~~~~~v~~vd~~Gk~l~~~~~~~-------------------------~~~~~~~~~~~v~~~~------~G~~lv~~~  143 (276)
T 3no2_A           95 CGHPSTILEVNMKGEVLSKTEFET-------------------------GIERPHAQFRQINKNK------KGNYLVPLF  143 (276)
T ss_dssp             ESTTEEEEEECTTSCEEEEEEECC-------------------------SCSSGGGSCSCCEECT------TSCEEEEET
T ss_pred             cCCCCEEEEEeCCCCEEEEEeccC-------------------------CCCcccccccCceECC------CCCEEEEec
Confidence            98 778999998666677772100                         0000001122233332      334567888


Q ss_pred             CCCeEEEEEcCCCcEEEEecC
Q psy731          287 GHNHIVVYNYRTNDSHIIHHN  307 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~  307 (494)
                      ....+++||.+.+..|++...
T Consensus       144 ~~~~v~~~d~~G~~~w~~~~~  164 (276)
T 3no2_A          144 ATSEVREIAPNGQLLNSVKLS  164 (276)
T ss_dssp             TTTEEEEECTTSCEEEEEECS
T ss_pred             CCCEEEEECCCCCEEEEEECC
Confidence            889999999998899999764

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.62  E-value=0.0059  Score=60.67  Aligned_cols=246  Identities=11%  Similarity=0.083  Sum_probs=129.4

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECC-CCcEEEEEEcCCCccccccCCccceEEEeecCCCCCc--EE
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLR-QQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNA--FL  203 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~-t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~--~v  203 (494)
                      .+..+.++++++ |++.+.+          .+.+||+. ++++.+....+.     .. ....++++     .++.  ++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~----------~v~~~~~~~~g~~~~~~~~~~-----~g-~~~~~~~s-----pdg~~l~~   99 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK----------KWSSFAVKSPTEIVHEASHPI-----GG-HPRANDAD-----TNTRAIFL   99 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT----------EEEEEEEEETTEEEEEEEEEC-----CS-SGGGGCTT-----SCCEEEEE
T ss_pred             CCcEEEECCCCCEEEEEccc----------eEEEEEECCCCCEEEeeEeec-----CC-CCccEEEC-----CCCCEEEE
Confidence            345566777775 7777654          47778886 787765444332     11 12334442     1344  57


Q ss_pred             EEee-------C-----CCCeEEEEEcc-CCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEE
Q psy731          204 YIAD-------S-----GHNHIVVYNYR-TNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVV  269 (494)
Q Consensus       204 YItD-------s-----~~~~iIVyd~~-~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~V  269 (494)
                      |++|       +     ..+.+.||++. +|+.-+. ....                           .........+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~---------------------------~~~~~~~~~~~~  152 (365)
T 1jof_A          100 LAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYE---------------------------YQENTGIHGMVF  152 (365)
T ss_dssp             EECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEE---------------------------CCTTCCEEEEEE
T ss_pred             EEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEE---------------------------eCCCCcceEEEE
Confidence            7777       2     45678899887 4544322 1100                           001223455566


Q ss_pred             eeecCCCCCcEEEEecCCCCeEEEEEcC-CCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEE
Q psy731          270 DVTSANCDDAFLYIADSGHNHIVVYNYR-TNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMY  348 (494)
Q Consensus       270 D~~~~~c~~~~~YI~D~~~~gliVydl~-~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LY  348 (494)
                      +.     +..++|++|.+...|.+||+. +++.-.+..-.+   |.      .      ..+..++++||+    ++.||
T Consensus       153 sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~---~~------~------g~~p~~~~~spd----g~~l~  208 (365)
T 1jof_A          153 DP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDA---PD------P------GDHPRWVAMHPT----GNYLY  208 (365)
T ss_dssp             CT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC---SS------T------TCCEEEEEECTT----SSEEE
T ss_pred             CC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEec---CC------C------CCCCCEeEECCC----CCEEE
Confidence            53     356899999888899999998 665422211000   00      0      134667999997    37899


Q ss_pred             EeeC-CCc-ceEeeechhhcCCCcCccccccceEEec--ccCCCC------CCCeEE-eeCCCC-eEEEeccCCC-----
Q psy731          349 FHPL-AST-TEFAVTTKVLQNRSLDFSRSNFDFKVMG--SRGTGS------QSGASS-LDEETG-VIFYALLVKS-----  411 (494)
Q Consensus       349 f~pl-ss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G--~~G~~~------qs~g~~-~D~~~G-~ly~~~~~~~-----  411 (494)
                      ...- +++ .+|.+..+   +..+..  ....+..+.  ..|...      ...+++ ++ .+| .||.+....+     
T Consensus       209 v~~~~~~~v~v~~~~~~---~g~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s-pdG~~l~v~~~~~~~~~~~  282 (365)
T 1jof_A          209 ALMEAGNRICEYVIDPA---THMPVY--THHSFPLIPPGIPDRDPETGKGLYRADVCALT-FSGKYMFASSRANKFELQG  282 (365)
T ss_dssp             EEETTTTEEEEEEECTT---TCCEEE--EEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC-TTSSEEEEEEEESSTTSCC
T ss_pred             EEECCCCeEEEEEEeCC---CCcEEE--ccceEEcCCCCcCCcccccccccccccEEEEC-CCCCEEEEECCCCCCCCCC
Confidence            8653 332 45554321   111000  000111111  011111      245788 98 566 6888887666     


Q ss_pred             eEEEEeCC-CCccccccceeeeee-cCCeEecccceEEcC---Cc-eEEEEe
Q psy731          412 GVGCWNTF-RGEEYNEKSMGLVAE-DNATLIYPSDIRVDR---TG-VLWVLS  457 (494)
Q Consensus       412 aI~~w~~~-~~~~~~~~~~~~v~~-d~~~l~~pd~~~id~---~g-~Lwvls  457 (494)
                      .|..|+.+ +| .+     ..+.. -...-..|.++.+.+   +| +||+..
T Consensus       283 ~i~v~~~~~~g-~~-----~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~  328 (365)
T 1jof_A          283 YIAGFKLRDCG-SI-----EKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD  328 (365)
T ss_dssp             EEEEEEECTTS-CE-----EEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred             eEEEEEECCCC-CE-----EEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence            89999874 32 22     21110 000113577777777   45 677764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.60  E-value=0.0065  Score=62.50  Aligned_cols=154  Identities=13%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             EEEEecCC--CCeEEEEEc--CCCcEEEEecCCcccCCCCcceEEcCEEeee-ecceeeeee--ccCCCCCceeEEEeeC
Q psy731          280 FLYIADSG--HNHIVVYNY--RTNDSHIIHHNYLHFDPLFGDFTIGGVNFQW-QTGIHGMSL--SPLTRDNFRVMYFHPL  352 (494)
Q Consensus       280 ~~YI~D~~--~~gliVydl--~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~-~~Gi~gIaL--sp~~~~g~r~LYf~pl  352 (494)
                      .||++|-.  .+.|-+|++  .++. ++..-..-.             ++.- ...+.||++  +|..  |.-.+|..-=
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~-------------pv~t~~~~pyGlcly~~~~~--g~~yafV~~k  151 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDH-------------PIATAINEVYGFTLYHSQKT--GKYYAMVTGK  151 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTS-------------CEECCCSSCCCEEEEECTTT--CCEEEEEECS
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCc-eeecccccc-------------CcCCCCCCeeEEEEEecCCC--CcEEEEEECC
Confidence            68999988  899999977  3433 222111000             0000 134677999  6642  3224555333


Q ss_pred             CCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeC--CCCccccccce
Q psy731          353 AST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNT--FRGEEYNEKSM  429 (494)
Q Consensus       353 ss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~--~~~~~~~~~~~  429 (494)
                      .++ ..|.+..  -.+... .   .+.++.+. .  .+|..|+++|+++|.||+++-. .+|++++.  .+  ..   +.
T Consensus       152 ~G~~~q~~l~~--~~~g~~-~---~~lVR~f~-l--gsq~EgcvvDd~~g~Lyv~eEd-~GIw~~da~p~~--~~---~~  216 (355)
T 3amr_A          152 EGEFEQYELKA--DKNGYI-S---GKKVRAFK-M--NSQTEGMAADDEYGRLYIAEED-EAIWKFSAEPDG--GS---NG  216 (355)
T ss_dssp             SSEEEEEEEEE--CTTSCE-E---EEEEEEEE-C--SSCEEEEEEETTTTEEEEEETT-TEEEEEECSTTS--CS---CC
T ss_pred             CCeEEEEEEEe--CCCCcc-c---ceEEEEec-C--CCCcceEEEcCCCCeEEEeccc-ceEEEEeCCcCC--CC---Cc
Confidence            331 2222311  111111 1   12222222 2  3689999999999999999988 67999994  44  11   11


Q ss_pred             eeeee-cCCeEe-cccceEEc--C--CceEEEEe---cCchhhh
Q psy731          430 GLVAE-DNATLI-YPSDIRVD--R--TGVLWVLS---NKLPVFL  464 (494)
Q Consensus       430 ~~v~~-d~~~l~-~pd~~~id--~--~g~Lwvls---nrl~~~~  464 (494)
                      .+|.. +...|. -|.||.|.  .  +|+|++++   |.|..|-
T Consensus       217 ~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          217 TVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             EEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             eEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            23322 123444 68899984  3  25788876   4565554

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.54  E-value=0.0087  Score=59.10  Aligned_cols=200  Identities=10%  Similarity=0.044  Sum_probs=111.4

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      -.+++..+ +++||+=.. ..     +.-.|.++|++|+++++++.+++.      -|-..+.++       +..+|+++
T Consensus        44 ftqGL~~~-~~~LyestG-~~-----g~S~v~~vD~~Tgkv~~~~~l~~~------~FgeGit~~-------g~~ly~lt  103 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTG-LN-----GRSSIRKVDIESGKTLQQIELGKR------YFGEGISDW-------KDKIVGLT  103 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEE-ET-----TEEEEEEECTTTCCEEEEEECCTT------CCEEEEEEE-------TTEEEEEE
T ss_pred             ccceEEEE-CCEEEEECC-CC-----CCceEEEEECCCCcEEEEEecCCc------cceeEEEEe-------CCEEEEEE
Confidence            35677777 579998532 11     122799999999999999998761      222445554       46899999


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      -..+.+.|||.++.+.-+-             |.+.|               ++   -.++-|       +..+|++| +
T Consensus       104 w~~~~v~v~D~~t~~~~~t-------------i~~~~---------------eG---~glt~d-------g~~L~~Sd-G  144 (262)
T 3nol_A          104 WKNGLGFVWNIRNLRQVRS-------------FNYDG---------------EG---WGLTHN-------DQYLIMSD-G  144 (262)
T ss_dssp             SSSSEEEEEETTTCCEEEE-------------EECSS---------------CC---CCEEEC-------SSCEEECC-S
T ss_pred             eeCCEEEEEECccCcEEEE-------------EECCC---------------Cc---eEEecC-------CCEEEEEC-C
Confidence            8899999999988776432             11111               01   122222       46799999 5


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN  367 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~  367 (494)
                      ...|.++|-++.+.-+--.-           .-+|.++.   +++.++.. +   |  .||..---+..+..|..+-.+-
T Consensus       145 s~~i~~iDp~T~~v~~~I~V-----------~~~g~~~~---~lNELe~~-~---G--~lyan~w~~~~I~vIDp~tG~V  204 (262)
T 3nol_A          145 TPVLRFLDPESLTPVRTITV-----------TAHGEELP---ELNELEWV-D---G--EIFANVWQTNKIVRIDPETGKV  204 (262)
T ss_dssp             SSEEEEECTTTCSEEEEEEC-----------EETTEECC---CEEEEEEE-T---T--EEEEEETTSSEEEEECTTTCBE
T ss_pred             CCeEEEEcCCCCeEEEEEEe-----------ccCCcccc---ccceeEEE-C---C--EEEEEEccCCeEEEEECCCCcE
Confidence            77899998887664322111           01233321   23334432 1   2  4666554455666665432211


Q ss_pred             CC-cCccccccceEEecccCCCCCCCeEEeeCCCCeEEEecc
Q psy731          368 RS-LDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALL  408 (494)
Q Consensus       368 ~~-~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~  408 (494)
                      .. ++.+.+....+.....  ..-.-|+|+||+++.||++--
T Consensus       205 ~~~Id~~~L~~~~~~~~~~--~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          205 TGIIDLNGILAEAGPLPSP--IDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEEECTTGGGGSCSCCSS--CCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCcCccccccccCc--CCceEEEEEcCCCCEEEEECC
Confidence            00 0111111100000001  123478999988889888654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.50  E-value=0.006  Score=67.46  Aligned_cols=234  Identities=14%  Similarity=0.157  Sum_probs=132.9

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ..|..+..|..++|||---+.         -|.+||..+++..+ |.-+.   .-+...+.++..|      .++.+||.
T Consensus       363 ~~v~~i~~d~~g~lWigt~~~---------Gl~~~~~~~~~~~~-~~~~~---~~~~~~v~~i~~d------~~g~lWig  423 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLWIGTDGG---------GINVFENGKRVAIY-NKENR---ELLSNSVLCSLKD------SEGNLWFG  423 (781)
T ss_dssp             SCEEEEEECTTSCEEEEEBSS---------CEEEEETTEEEEEC-C--------CCCSBEEEEEEC------TTSCEEEE
T ss_pred             cceEEEEEcCCCCEEEEeCCC---------cEEEEECCCCeEEE-ccCCC---CCCCcceEEEEEC------CCCCEEEE
Confidence            347888999999999863232         37888987765432 21111   0112233344443      46778886


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      - ..++|.+||.++++..++....                            ........|..|.      ++.++|+-.
T Consensus       424 t-~~~Gl~~~~~~~~~~~~~~~~~----------------------------~~~~~v~~i~~d~------~g~lwigt~  468 (781)
T 3v9f_A          424 T-YLGNISYYNTRLKKFQIIELEK----------------------------NELLDVRVFYEDK------NKKIWIGTH  468 (781)
T ss_dssp             E-TTEEEEEECSSSCEEEECCSTT----------------------------TCCCCEEEEEECT------TSEEEEEET
T ss_pred             e-ccCCEEEEcCCCCcEEEeccCC----------------------------CCCCeEEEEEECC------CCCEEEEEC
Confidence            3 3468999999988776662210                            0111233445542      467888753


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhc
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQ  366 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~  366 (494)
                        .||.+||.++++..++.+..  ..+..            ..-+..|+.+++     ..|++....+ -+|+...+-  
T Consensus       469 --~Gl~~~~~~~~~~~~~~~~~--~~~~~------------~~~i~~i~~d~~-----g~lWigt~~~-Gl~~~~~~~--  524 (781)
T 3v9f_A          469 --AGVFVIDLASKKVIHHYDTS--NSQLL------------ENFVRSIAQDSE-----GRFWIGTFGG-GVGIYTPDM--  524 (781)
T ss_dssp             --TEEEEEESSSSSCCEEECTT--TSSCS------------CSCEEEEEECTT-----CCEEEEESSS-CEEEECTTC--
T ss_pred             --CceEEEeCCCCeEEecccCc--ccccc------------cceeEEEEEcCC-----CCEEEEEcCC-CEEEEeCCC--
Confidence              79999999988755554321  00000            123566777543     3788876632 366653210  


Q ss_pred             CCCcCccccccceEEecc-cCC-CCCCCeEEeeCCCCeEEEeccCCCeE-EEEeCCCCccccccceeeeeecCCeE--ec
Q psy731          367 NRSLDFSRSNFDFKVMGS-RGT-GSQSGASSLDEETGVIFYALLVKSGV-GCWNTFRGEEYNEKSMGLVAEDNATL--IY  441 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~-~G~-~~qs~g~~~D~~~G~ly~~~~~~~aI-~~w~~~~~~~~~~~~~~~v~~d~~~l--~~  441 (494)
                                ..++.+.. .|. .....++..| .+|+|+++..  +++ .++|+.++ .+     ...... ..|  ..
T Consensus       525 ----------~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi~T~--~Glv~~~d~~~~-~~-----~~~~~~-~gl~~~~  584 (781)
T 3v9f_A          525 ----------QLVRKFNQYEGFCSNTINQIYRS-SKGQMWLATG--EGLVCFPSARNF-DY-----QVFQRK-EGLPNTH  584 (781)
T ss_dssp             ----------CEEEEECTTTTCSCSCEEEEEEC-TTSCEEEEET--TEEEEESCTTTC-CC-----EEECGG-GTCSCCC
T ss_pred             ----------CeEEEccCCCCCCCCeeEEEEEC-CCCCEEEEEC--CCceEEECCCCC-cE-----EEcccc-CCCCCce
Confidence                      11222221 111 1223467788 8999999875  788 99999873 22     222111 111  12


Q ss_pred             ccceEEcCCceEEEEec
Q psy731          442 PSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       442 pd~~~id~~g~Lwvlsn  458 (494)
                      ..++..|.+|.||+.++
T Consensus       585 i~~i~~d~~g~lW~~t~  601 (781)
T 3v9f_A          585 IRAISEDKNGNIWASTN  601 (781)
T ss_dssp             CCEEEECSSSCEEEECS
T ss_pred             EEEEEECCCCCEEEEcC
Confidence            34778899999999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=97.50  E-value=0.052  Score=58.72  Aligned_cols=235  Identities=10%  Similarity=0.103  Sum_probs=124.9

Q ss_pred             CCEEEEEECCCCcEEEEEEcCCCccc----cccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCc
Q psy731          155 PPSVQVYDLRQQMQIRFFQLKEKTDY----TEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNY  230 (494)
Q Consensus       155 ~Pklv~~dl~t~~vi~~~~lp~~~~~----~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~  230 (494)
                      ++.+.++|..|.++++++........    .+.+.+..++.-     ..+...|++-...+.|.++|..+.+.-++.   
T Consensus       265 ~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s-----~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~---  336 (567)
T 1qks_A          265 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-----HYRPEFIVNVKETGKILLVDYTDLNNLKTT---  336 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-----SSSSEEEEEETTTTEEEEEETTCSSEEEEE---
T ss_pred             CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc-----CCCCEEEEEecCCCeEEEEecCCCccceee---
Confidence            35788889999999888876431000    111222222221     123344455555556666666555433331   


Q ss_pred             cccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecC-Cc
Q psy731          231 LHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHN-YL  309 (494)
Q Consensus       231 ~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~-~~  309 (494)
                                                ......++.++.+|     ++..|+|+++...+.|.|+|.++++.-....- .-
T Consensus       337 --------------------------~i~~~~~~~d~~~~-----pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~  385 (567)
T 1qks_A          337 --------------------------EISAERFLHDGGLD-----GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ  385 (567)
T ss_dssp             --------------------------EEECCSSEEEEEEC-----TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             --------------------------eeeccccccCceEC-----CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence                                      11122345556665     46789999999999999999999874322221 22


Q ss_pred             ccCCCCcceEEcCEEeeeecceeeee-eccCCCCCceeEEEee-CCCcceEeeechhhcCCCcCccccccceEEecccCC
Q psy731          310 HFDPLFGDFTIGGVNFQWQTGIHGMS-LSPLTRDNFRVMYFHP-LASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGT  387 (494)
Q Consensus       310 ~~dP~~~~~~v~G~~f~~~~Gi~gIa-Lsp~~~~g~r~LYf~p-lss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~  387 (494)
                      .|.|..              |   +. ..|+    ++.+|+.+ +.+..+--|.+.--..+.    ...+.++.+--.| 
T Consensus       386 ~Phpg~--------------g---~~~~~p~----~g~v~~t~~~g~~~Vsvid~~~~~~~~----~~~kvv~~i~~~g-  439 (567)
T 1qks_A          386 TPHPGR--------------G---ANFVHPT----FGPVWATSHMGDDSVALIGTDPEGHPD----NAWKILDSFPALG-  439 (567)
T ss_dssp             SBCCTT--------------C---EEEEETT----TEEEEEEEBSSSSEEEEEECCTTTCTT----TBTSEEEEEECSC-
T ss_pred             CCCCcc--------------c---eeeECCC----CCcEEEeCCCCCCeEEEecCCCCCCcc----ccCEEEEEEecCC-
Confidence            233321              2   22 3443    35778765 555566666654311111    1112233332112 


Q ss_pred             CCCCCeEEeeCCCCeEEEecc-C-----CCeEEEEeCCCCccc---cccceeeeeec-----CCeEecccceEEcCCc-e
Q psy731          388 GSQSGASSLDEETGVIFYALL-V-----KSGVGCWNTFRGEEY---NEKSMGLVAED-----NATLIYPSDIRVDRTG-V  452 (494)
Q Consensus       388 ~~qs~g~~~D~~~G~ly~~~~-~-----~~aI~~w~~~~~~~~---~~~~~~~v~~d-----~~~l~~pd~~~id~~g-~  452 (494)
                       ..+-.+.+.|+.-+||.... +     .++|..+|.++. +.   . +-++++-..     .+.=..|.++.++++| +
T Consensus       440 -~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  516 (567)
T 1qks_A          440 -GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM-TGDGSD-PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE  516 (567)
T ss_dssp             -SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC-CCSSSC-CCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred             -CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc-cccccC-CCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence             22344677855558888763 3     359999998751 00   1 112333110     0111357788999988 7


Q ss_pred             EEEEe
Q psy731          453 LWVLS  457 (494)
Q Consensus       453 Lwvls  457 (494)
                      |||..
T Consensus       517 ~~~s~  521 (567)
T 1qks_A          517 VWFSV  521 (567)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99984

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=97.47  E-value=0.0083  Score=59.57  Aligned_cols=183  Identities=11%  Similarity=0.046  Sum_probs=102.6

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECC-CCcEEE--EEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLR-QQMQIR--FFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~-t~~vi~--~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      .+..+.++++++ |++.|.|..        .|.+||+. ++++..  .+.+|.     ..+....++++-     +..++
T Consensus       146 ~~~~~~~spdG~~l~~~~~~~~--------~v~~~~~~~~g~~~~~~~~~~~~-----~g~~p~~~~~sp-----dg~~l  207 (365)
T 1jof_A          146 GIHGMVFDPTETYLYSADLTAN--------KLWTHRKLASGEVELVGSVDAPD-----PGDHPRWVAMHP-----TGNYL  207 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTT--------EEEEEEECTTSCEEEEEEEECSS-----TTCCEEEEEECT-----TSSEE
T ss_pred             cceEEEECCCCCEEEEEcCCCC--------EEEEEEECCCCCEEEeeeEecCC-----CCCCCCEeEECC-----CCCEE
Confidence            466778888885 777888776        79999998 787643  333332     234556666642     56799


Q ss_pred             EEeeCCCCeEEEEEcc--CCceeE-EecCccccCCCCCccccCCccceeeeecccccccccccceeeE-EeeecCCCCCc
Q psy731          204 YIADSGHNHIVVYNYR--TNDSHI-IHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMV-VDVTSANCDDA  279 (494)
Q Consensus       204 YItDs~~~~iIVyd~~--~~~~~r-v~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~-VD~~~~~c~~~  279 (494)
                      |+++...+.+.||+++  +|+... +..-..-+..    +  .|..         ...+.......++ ++.     +..
T Consensus       208 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~----~--~g~~---------~~~~~~~~~~~i~~~sp-----dG~  267 (365)
T 1jof_A          208 YALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG----I--PDRD---------PETGKGLYRADVCALTF-----SGK  267 (365)
T ss_dssp             EEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT----C--CCBC---------TTTSSBSEEEEEEEECT-----TSS
T ss_pred             EEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC----c--CCcc---------cccccccccccEEEECC-----CCC
Confidence            9999888899998765  565421 1100000000    0  0000         0000000234555 542     457


Q ss_pred             EEEEecCCCC-----eEEEEEcC-CCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC
Q psy731          280 FLYIADSGHN-----HIVVYNYR-TNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA  353 (494)
Q Consensus       280 ~~YI~D~~~~-----gliVydl~-~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls  353 (494)
                      ++|+++.+..     .|.||++. +++.-++....  +.              ...+..++++||+.-+ +++||..-..
T Consensus       268 ~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~--~~--------------~~~~~~~~a~sp~~~d-g~~l~v~~~~  330 (365)
T 1jof_A          268 YMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--PT--------------PTSGGHSNAVSPCPWS-DEWMAITDDQ  330 (365)
T ss_dssp             EEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--EC--------------SSCCTTCCCEEECTTC-TTEEEEECSS
T ss_pred             EEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeee--ec--------------CCCCcccceecCCCcC-CCEEEEEEcC
Confidence            8999987655     79999986 45433221100  00              0123456899983111 3789997654


Q ss_pred             Cc--ceEeeechhh
Q psy731          354 ST--TEFAVTTKVL  365 (494)
Q Consensus       354 s~--~ly~V~T~~L  365 (494)
                      +.  .+|.+.++.|
T Consensus       331 ~~~v~v~~~~~~~l  344 (365)
T 1jof_A          331 EGWLEIYRWKDEFL  344 (365)
T ss_dssp             SCEEEEEEEETTEE
T ss_pred             CCeEEEEEEchhhC
Confidence            32  6787776533

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.41  E-value=0.0018  Score=70.90  Aligned_cols=121  Identities=17%  Similarity=0.137  Sum_probs=76.5

Q ss_pred             ceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhc---CCCcCcc-ccccceEEecccCCCCCCCeEEeeCCCCeEEE
Q psy731          330 GIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQ---NRSLDFS-RSNFDFKVMGSRGTGSQSGASSLDEETGVIFY  405 (494)
Q Consensus       330 Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~---~~~~~~~-~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~  405 (494)
                      ...|+++|||    ++++|..-+.+.++..+.++-++   +..+... .....+ .+|.     ..-++++| .+|++|.
T Consensus       278 ~PhGv~~sPD----Gk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~-----gP~h~aF~-~dG~aY~  346 (595)
T 1fwx_A          278 NPHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGL-----GPLHTAFD-GRGNAYT  346 (595)
T ss_dssp             SCCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCS-----CEEEEEEC-TTSEEEE
T ss_pred             CceEEEEcCC----CCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCC-----CcceEEEC-CCCeEEE
Confidence            3677999998    48999999999988888887553   2233211 111122 1332     24678999 6889999


Q ss_pred             eccCCCeEEEEeCCCCc-ccccc-ceeeeeecC-----CeEecccceEEcCCceEEEEecCch
Q psy731          406 ALLVKSGVGCWNTFRGE-EYNEK-SMGLVAEDN-----ATLIYPSDIRVDRTGVLWVLSNKLP  461 (494)
Q Consensus       406 ~~~~~~aI~~w~~~~~~-~~~~~-~~~~v~~d~-----~~l~~pd~~~id~~g~Lwvlsnrl~  461 (494)
                      +..-.+.|..||.+++. .|+-+ ...++.+-+     .-+.++-++.+.+||.-.+.+||+.
T Consensus       347 t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s  409 (595)
T 1fwx_A          347 SLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS  409 (595)
T ss_dssp             EETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred             EEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence            99999999999986511 01000 112332221     1256777888888995445556665

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=97.36  E-value=0.03  Score=58.68  Aligned_cols=128  Identities=11%  Similarity=0.031  Sum_probs=81.2

Q ss_pred             eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCC-eEEEEeCCCCC
Q psy731           71 WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCD-RLWALDSGVVE  149 (494)
Q Consensus        71 ~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~-~LwvlD~G~~~  149 (494)
                      +..|+||+-..+.... .++..|+....         -.+.-.|-         +. .. ++.+++++ +|||-+.+...
T Consensus        83 ~~~~vyV~n~~~~~~~-~~VsVID~~t~---------~vv~~I~v---------G~-~P-gia~SpDgk~lyVan~~~~~  141 (426)
T 3c75_H           83 DARRVYIQDPAHFAAI-TQQFVIDGSTG---------RILGMTDG---------GF-LP-HPVAAEDGSFFAQASTVFER  141 (426)
T ss_dssp             CTTEEEEEECTTTCSS-EEEEEEETTTT---------EEEEEEEE---------CS-SC-EEEECTTSSCEEEEEEEEEE
T ss_pred             CCCEEEEECCCcCCCC-CeEEEEECCCC---------EEEEEEEC---------CC-CC-ceEECCCCCEEEEEeccccc
Confidence            4678999998763222 67888876432         12222221         11 23 67788766 59999863110


Q ss_pred             -CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEEEEccCCcee
Q psy731          150 -GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVVYNYRTNDSH  224 (494)
Q Consensus       150 -~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIVyd~~~~~~~  224 (494)
                       ..-...-.|.+||+.|+++++++.++..--.........++++-     +..++||++.. .+.|.|+|+++++.-
T Consensus       142 ~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp-----DGk~lyV~n~~~~~~VsVID~~t~kvv  213 (426)
T 3c75_H          142 IARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP-----DNKNLLFYQFSPAPAVGVVDLEGKTFD  213 (426)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT-----TSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             cccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC-----CCCEEEEEecCCCCeEEEEECCCCeEE
Confidence             00001127999999999999999987200000123456777753     78899999975 688999999998763

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=97.22  E-value=0.11  Score=51.94  Aligned_cols=87  Identities=13%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             eEEEcCCC-eEEEEeCCCCCC-CCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          131 KVQSDPCD-RLWALDSGVVEG-KMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       131 ~i~iD~~~-~LwvlD~G~~~~-~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      .+.+++++ +|||........ .-...-.|.+||+.+.++++++.++.+ ..........++++-     +..++|++..
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~-~~~~g~~p~~i~~sp-----dg~~l~v~n~  127 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK-RVQGLNYDGLFRQTT-----DGKFIVLQNA  127 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT-BCCBCCCGGGEEECT-----TSSEEEEEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc-ccccCCCcceEEECC-----CCCEEEEECC
Confidence            77888776 688887421100 000012689999999999999988752 112234567788853     6789999997


Q ss_pred             C-CCeEEEEEccCCce
Q psy731          209 G-HNHIVVYNYRTNDS  223 (494)
Q Consensus       209 ~-~~~iIVyd~~~~~~  223 (494)
                      . .+.|-|||+++++.
T Consensus       128 ~~~~~v~v~d~~~~~~  143 (361)
T 2oiz_A          128 SPATSIGIVDVAKGDY  143 (361)
T ss_dssp             SSSEEEEEEETTTTEE
T ss_pred             CCCCeEEEEECCCCcE
Confidence            6 68899999998854

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.19  E-value=0.086  Score=55.96  Aligned_cols=224  Identities=11%  Similarity=0.085  Sum_probs=121.9

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      ....+++-+++ |+|--+|..+  -..+..|+.+|.+|++++++++.+..    +..+-=|+.+.     .++..+|.|+
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~--g~~~g~v~vlD~~T~~v~~~~~~~~~----~~~~~Yd~~~~-----p~~~~mvsS~  206 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEE--GEGPGGILMLDHYSFEPLGKWEIDRG----DQYLAYDFWWN-----LPNEVLVSSE  206 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETT--SCSCCEEEEECTTTCCEEEECCSBCT----TCCCCCCEEEE-----TTTTEEEECB
T ss_pred             cccceeECCCe-EEEEcCCCcC--CCCCCeEEEEECCCCeEEEEEccCCC----CccccceEEEC-----CCCCEEEEcc
Confidence            44445666667 8876666642  23556899999999999999987651    11111234432     2566889998


Q ss_pred             ------------------CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEE
Q psy731          208 ------------------SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVV  269 (494)
Q Consensus       208 ------------------s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~V  269 (494)
                                        ...+.|.|||+.+++.-.-             +          .+     -.+++....|++
T Consensus       207 wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t-------------I----------~v-----g~~g~~P~~i~f  258 (462)
T 2ece_A          207 WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS-------------L----------TL-----GEENRMALELRP  258 (462)
T ss_dssp             CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE-------------E----------ES-----CTTEEEEEEEEE
T ss_pred             CcCccccccccchhhhhhccCCEEEEEECCCCcEeeE-------------E----------ec-----CCCCCccceeEe
Confidence                              3378999999998632111             0          11     011223344444


Q ss_pred             eeecCCCCCcEEEEecC-----CCCeEEEEEcCCCcEEEEecCC-cccCCCCcceEEcCEEeee-ecceeeeeeccCCCC
Q psy731          270 DVTSANCDDAFLYIADS-----GHNHIVVYNYRTNDSHIIHHNY-LHFDPLFGDFTIGGVNFQW-QTGIHGMSLSPLTRD  342 (494)
Q Consensus       270 D~~~~~c~~~~~YI~D~-----~~~gliVydl~~~~swrv~~~~-~~~dP~~~~~~v~G~~f~~-~~Gi~gIaLsp~~~~  342 (494)
                      ...   -+..++|++..     ....|.||.... ..|....-- ....+....+.--.+.|.- ....-+|+|||+   
T Consensus       259 ~~~---Pdg~~aYV~~e~~~~~Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D---  331 (462)
T 2ece_A          259 LHD---PTKLMGFINMVVSLKDLSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD---  331 (462)
T ss_dssp             CSS---TTCCEEEEEEEEETTTCCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT---
T ss_pred             eEC---CCCCEEEEEEeeeccCCCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC---
Confidence            222   25689999988     788899988876 456554310 1111000000000000000 123566999998   


Q ss_pred             CceeEEEeeCCCc--ceEeeechhhcCCCcCccccccceEEec----------ccCCCCCCCeEEeeCCCCeEEEec
Q psy731          343 NFRVMYFHPLAST--TEFAVTTKVLQNRSLDFSRSNFDFKVMG----------SRGTGSQSGASSLDEETGVIFYAL  407 (494)
Q Consensus       343 g~r~LYf~plss~--~ly~V~T~~L~~~~~~~~~~~~~v~~~G----------~~G~~~qs~g~~~D~~~G~ly~~~  407 (494)
                       +|.||.+-....  ..|.|...    .+.   .+...+..-|          .++ .+...++++++....||.+.
T Consensus       332 -GrfLYVSnrg~d~VavfdV~d~----~~~---~lv~~I~tGG~~~~~~~~~G~~~-~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          332 -DKFLYLSLWGIGEVRQYDISNP----FKP---VLTGKVKLGGIFHRADHPAGHKL-TGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             -SCEEEEEETTTTEEEEEECSST----TSC---EEEEEEECBTTTTCBCCTTSCCC-CSCCCCEEECTTSSEEEEEC
T ss_pred             -CCEEEEEeCCCCEEEEEEecCC----CCc---EEEEEEEeCCeeccccccccccC-CCCCCEEEEcCCCCEEEEEc
Confidence             489999766544  44555311    110   1112222111          111 12357899995444899987

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.18  E-value=0.16  Score=48.88  Aligned_cols=215  Identities=7%  Similarity=-0.015  Sum_probs=119.8

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCc--EEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQM--QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~--vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      |..+...+++++.+.=....        .|..||+.+++  .++++.-       ....+..+.+..     +..+++.+
T Consensus        11 i~~~~~s~~~~~l~~~~~d~--------~v~i~~~~~~~~~~~~~~~~-------h~~~v~~~~~~~-----~~~~l~~~   70 (372)
T 1k8k_C           11 ISCHAWNKDRTQIAICPNNH--------EVHIYEKSGNKWVQVHELKE-------HNGQVTGVDWAP-----DSNRIVTC   70 (372)
T ss_dssp             CCEEEECTTSSEEEEECSSS--------EEEEEEEETTEEEEEEEEEC-------CSSCEEEEEEET-----TTTEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCC--------EEEEEeCCCCcEEeeeeecC-------CCCcccEEEEeC-----CCCEEEEE
Confidence            45566667777666543332        78889999887  5555542       233455555532     34455554


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      . ..+.|.+||+.++.......                            ..........+.+..     +..+++... 
T Consensus        71 ~-~dg~i~vwd~~~~~~~~~~~----------------------------~~~~~~~v~~~~~~~-----~~~~l~~~~-  115 (372)
T 1k8k_C           71 G-TDRNAYVWTLKGRTWKPTLV----------------------------ILRINRAARCVRWAP-----NEKKFAVGS-  115 (372)
T ss_dssp             E-TTSCEEEEEEETTEEEEEEE----------------------------CCCCSSCEEEEEECT-----TSSEEEEEE-
T ss_pred             c-CCCeEEEEECCCCeeeeeEE----------------------------eecCCCceeEEEECC-----CCCEEEEEe-
Confidence            4 45679999998886433310                            000111233344432     234555543 


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||+.+++.|.+......+.               ...+..|+++|+    ++.|+.....+. ++|.+.+..+
T Consensus       116 ~d~~v~i~d~~~~~~~~~~~~~~~~~---------------~~~i~~~~~~~~----~~~l~~~~~dg~i~~~d~~~~~~  176 (372)
T 1k8k_C          116 GSRVISICYFEQENDWWVCKHIKKPI---------------RSTVLSLDWHPN----SVLLAAGSCDFKCRIFSAYIKEV  176 (372)
T ss_dssp             TTSSEEEEEEETTTTEEEEEEECTTC---------------CSCEEEEEECTT----SSEEEEEETTSCEEEEECCCTTT
T ss_pred             CCCEEEEEEecCCCcceeeeeeeccc---------------CCCeeEEEEcCC----CCEEEEEcCCCCEEEEEcccccc
Confidence            35668899999887655543322211               234778999886    356766665554 6777655444


Q ss_pred             cCCCcCc-----cccccceEEe-cccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDF-----SRSNFDFKVM-GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~-----~~~~~~v~~~-G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .......     ......+..+ +..   .....++++ .+|.++++--....|..||..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~  234 (372)
T 1k8k_C          177 EERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFS-ANGSRVAWVSHDSTVCLADADKK  234 (372)
T ss_dssp             SCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGT
T ss_pred             cccccccccccccchhhheEecCCCC---CeEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence            3322100     0011222222 222   345677888 57766676678889999999764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.18  E-value=0.021  Score=57.89  Aligned_cols=164  Identities=9%  Similarity=0.032  Sum_probs=91.3

Q ss_pred             ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731          262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR  341 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~  341 (494)
                      .....|+++.      ++.+||+|.. ..|.++| .+++ -.+..-....         .|     ..|..|||++|+-.
T Consensus        29 ~~P~~ia~~p------dG~l~V~e~~-g~I~~~d-~~G~-~~~~~~~v~~---------~g-----~~g~~gia~~pdf~   85 (354)
T 3a9g_A           29 EVPWSIAPLG------GGRYLVTERP-GRLVLIS-PSGK-KLVASFDVAN---------VG-----EAGLLGLALHPEFP   85 (354)
T ss_dssp             SCEEEEEEEE------TTEEEEEETT-TEEEEEC-SSCE-EEEEECCCCC---------ST-----TCSEEEEEECTTTT
T ss_pred             CCCeEEEEcC------CCeEEEEeCC-CEEEEEe-CCCc-eEeeccceee---------cC-----CCceeeEEeCCCCC
Confidence            4566777774      3458999865 5666665 3333 1221110000         11     24689999998622


Q ss_pred             CCceeEEEeeCC---C----cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC-----
Q psy731          342 DNFRVMYFHPLA---S----TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV-----  409 (494)
Q Consensus       342 ~g~r~LYf~pls---s----~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~-----  409 (494)
                      . +++||+.-..   .    .+++++..+-- +..+..  ...-+..+. .+......+++++ .+|.||++.-.     
T Consensus        86 ~-~g~lyv~~~~~~~~~~~~~~v~r~~~~~~-~~~~~~--~~~l~~~~~-~~~~h~~~~l~~~-pDG~Lyvt~G~~~~~~  159 (354)
T 3a9g_A           86 K-KSWVYLYASYFAEGGHIRNRVIRGRLDGS-TFKLKE--VKTLIDGIP-GAYIHNGGRIRFG-PDGMLYITTGDAADPR  159 (354)
T ss_dssp             T-SCEEEEEEEEECGGGCEEEEEEEEEECSS-SCCEEE--EEEEEEEEE-CCSSCCCCCEEEC-TTSCEEEECCCTTCGG
T ss_pred             c-CCEEEEEEeccCCCCCcceEEEEEEECCC-CcCcCc--cEEEEEcCC-CCCCcCCceEEEC-CCCcEEEEECCCCCCc
Confidence            2 2588885432   2    45666643210 001110  000111121 1212345789999 79999998632     


Q ss_pred             --------CCeEEEEeCCCCcccccc----ceeeeeecCCeEecccceEEcC-CceEEEEecC
Q psy731          410 --------KSGVGCWNTFRGEEYNEK----SMGLVAEDNATLIYPSDIRVDR-TGVLWVLSNK  459 (494)
Q Consensus       410 --------~~aI~~w~~~~~~~~~~~----~~~~v~~d~~~l~~pd~~~id~-~g~Lwvlsnr  459 (494)
                              ...|.+.++++  ..-+.    ..++++..   +.-|.+|.+|+ +|.||+..+.
T Consensus       160 ~~~d~~~~~G~I~ri~~dG--~~p~~npf~~~~i~a~G---~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          160 LAQDLSSLAGKILRVDEEG--RPPADNPFPNSPIWSYG---HRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             GGTCTTCCSSEEEEECTTS--CCCTTSSSTTCCEEEEC---CSCCCEEEECTTTCCEEEEECC
T ss_pred             cccCCCCCCeEEEEEcCCC--CCCCCCCCCCCcEEEEc---cCCcceEEEeCCCCCEEEEecC
Confidence                    24799999987  22111    12455443   56799999999 8999999754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.05  E-value=0.1  Score=57.28  Aligned_cols=263  Identities=10%  Similarity=0.083  Sum_probs=130.7

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+..|..++|||--   ..       -|.+||.++++..+ |..+......+...+.++..|      .++.++|+=
T Consensus       374 ~v~~i~~d~~g~lWigt---~~-------GL~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~i~~d------~~g~lWigT  436 (758)
T 3ott_A          374 RIRHIYEDKEQQLWIAT---DG-------SINRYDYATRQFIH-YNIVDNTGTYNTNWTYYIFED------TAGQLWIST  436 (758)
T ss_dssp             CEEEEEECTTSCEEEEE---TT-------EEEEEETTTTEEEE-EEEECCC--CBSSSEEEEEEC------TTSEEEEEE
T ss_pred             ceEEEEECCCCCEEEEe---CC-------cHhhcCcCCCcEEE-eecCCCcCCCCCceEEEEEEc------CCCCEEEEE
Confidence            47889999999999943   21       59999999987654 543321000012223334433      567889863


Q ss_pred             CCCCeEEEEEccCCce---eEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          208 SGHNHIVVYNYRTNDS---HIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~---~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      . .++|.+||.++...   .++...                  +.|+..  .-+ .......|..|.      ++.++|.
T Consensus       437 ~-~~Gl~~~~~~~~~~~~~~~~~~~------------------~~~~~~--~~l-~~~~i~~i~~d~------~g~lWi~  488 (758)
T 3ott_A          437 C-LGGIFVVDKHKLMQSTSGQYIAE------------------QNYSVH--NGL-SGMFINQIIPDN------EGNVWVL  488 (758)
T ss_dssp             S-SSCEEEEEHHHHHHCCSSEEECS------------------EEECGG--GTC-SCSCEEEEEECT------TSCEEEE
T ss_pred             C-CCceEEEccccccccCCcceecc------------------cccccc--ccc-ccceeeeEEEcC------CCCEEEE
Confidence            3 35899999764110   011000                  000100  000 112234455552      4568883


Q ss_pred             cCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV  364 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~  364 (494)
                      .....||..||.++++.-++.+....     .           ...+..|..+.+     ..|++..-.  -+++...+-
T Consensus       489 ~~t~~Gl~~~d~~~~~~~~~~~~~~~-----~-----------~~~~~~i~~d~~-----g~lWigt~~--Gl~~~~~~~  545 (758)
T 3ott_A          489 LYNNKGIDKINPRTREVTKLFADELT-----G-----------EKSPNYLLCDED-----GLLWVGFHG--GVMRINPKD  545 (758)
T ss_dssp             ETTCSSEEEEETTTTEEEEECTTTSC-----G-----------GGCEEEEEECTT-----SCEEEEETT--EEEEECC--
T ss_pred             ccCCCCcEEEeCCCCceEEecCCCcC-----C-----------CcccceEEECCC-----CCEEEEecC--ceEEEecCC
Confidence            33457999999998875554322111     0           012344555432     377876543  355554221


Q ss_pred             hcCCCcCccccccceEEecccCC-CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEeccc
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGT-GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPS  443 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~-~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd  443 (494)
                      -   .         ++.+...|. .....++.-  .+|+|+++-  .++|.|+|+.++ .+.  +..+  .+ .  .+..
T Consensus       546 ~---~---------~~~~~~~gl~~~~i~~i~~--~~g~lWi~t--~~Gl~~~~~~~~-~~~--~~~~--~~-~--~~~~  601 (758)
T 3ott_A          546 E---S---------QQSISFGSFSNNEILSMTC--VKNSIWVST--TNGLWIIDRKTM-DAR--QQNM--TN-K--RFTS  601 (758)
T ss_dssp             C---C---------CCBCCCCC---CCEEEEEE--ETTEEEEEE--SSCEEEEETTTC-CEE--EC----CC-C--CCSE
T ss_pred             C---c---------eEEecccCCCccceEEEEE--CCCCEEEEC--CCCeEEEcCCCc-eeE--EecC--CC-C--ceee
Confidence            1   0         000100111 112234443  479999987  678999999873 221  1111  11 1  2333


Q ss_pred             ceEEcCCceEEEEec-CchhhhcCCC--CCCcccEEEEEEec
Q psy731          444 DIRVDRTGVLWVLSN-KLPVFLYSKL--KPEDINVRIFKSTV  482 (494)
Q Consensus       444 ~~~id~~g~Lwvlsn-rl~~~~~~~~--~~~~~nfrI~r~~~  482 (494)
                      .+..+.+|.||+-++ .+-.|.-..+  +...++..|-.+.+
T Consensus       602 ~~~~~~~G~l~fG~~~Gl~~f~p~~~~~~~~~~~v~it~~~v  643 (758)
T 3ott_A          602 LLFDPKEDCVYLGGADGFGISHSNLEATYQPERPILLTALYI  643 (758)
T ss_dssp             EEEETTTTEEEEECBSEEEEEEC---CCCCCCCCCEEEEEEE
T ss_pred             eEEECCCCcEEEecCCceEEEChhhcccccCCCCEEEEEEEE
Confidence            444467999999863 3433322221  23344555555544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.05  E-value=0.012  Score=62.04  Aligned_cols=171  Identities=14%  Similarity=0.098  Sum_probs=94.5

Q ss_pred             ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCC
Q psy731          262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLT  340 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~  340 (494)
                      .....|+++.      ++-+||++..+..|.+++..+++.-.+.. ......|            ....|++|||++|+-
T Consensus        27 ~~P~~~a~~p------dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~------------~g~~Gllgia~~Pdf   88 (454)
T 1cru_A           27 NKPHALLWGP------DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDA------------DGQNGLLGFAFHPDF   88 (454)
T ss_dssp             SSEEEEEECT------TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCT------------TSSCSEEEEEECTTT
T ss_pred             CCceEEEEcC------CCcEEEEEcCCCEEEEEECCCCcEeEEecCCcccccc------------CCCCceeEEEECCCc
Confidence            3455666663      35588888666567777765555433321 1000000            023688999999963


Q ss_pred             CCCceeEEEeeCC------------CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEecc
Q psy731          341 RDNFRVMYFHPLA------------STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALL  408 (494)
Q Consensus       341 ~~g~r~LYf~pls------------s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~  408 (494)
                      .. +++||+..-.            ..++++...+. .+..+..  ...-++.+.. +..-...++++| .+|.||++.-
T Consensus        89 ~~-~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~-~~~~~~~--~~~i~~~~p~-~~~H~~~~l~f~-pDG~Lyv~~G  162 (454)
T 1cru_A           89 KN-NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNK-STDTLEK--PVDLLAGLPS-SKDHQSGRLVIG-PDQKIYYTIG  162 (454)
T ss_dssp             TT-SCEEEEEEEEECTTC--CCSCEEEEEEEEEEET-TTTEEEE--EEEEEEEECC-CSSCCEEEEEEC-TTSCEEEEEC
T ss_pred             Cc-CCEEEEEEeccccCCCccccccccEEEEEEECC-CCCCcCC--cEEEEEcCCC-CCCCCCCeEeEC-CCCeEEEEEC
Confidence            22 3688885432            23566664321 0111110  0011111221 112346889999 7999999843


Q ss_pred             C--------------------------------CCeEEEEeCCCCcc----cccc-ceeeeeecCCeEecccceEEcCCc
Q psy731          409 V--------------------------------KSGVGCWNTFRGEE----YNEK-SMGLVAEDNATLIYPSDIRVDRTG  451 (494)
Q Consensus       409 ~--------------------------------~~aI~~w~~~~~~~----~~~~-~~~~v~~d~~~l~~pd~~~id~~g  451 (494)
                      .                                ..+|.+.|+++..|    |... ..++.+..   +.-|.++.+|++|
T Consensus       163 d~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G---~RNp~gla~dp~G  239 (454)
T 1cru_A          163 DQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG---HRNPQGLAFTPNG  239 (454)
T ss_dssp             CTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC---CSEEEEEEECTTS
T ss_pred             CCCCCCccccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEEC---CCCcceEEECCCC
Confidence            2                                35799999987311    1000 12344432   4568999999999


Q ss_pred             eEEEEecC
Q psy731          452 VLWVLSNK  459 (494)
Q Consensus       452 ~Lwvlsnr  459 (494)
                      .||+..+.
T Consensus       240 ~L~~~d~g  247 (454)
T 1cru_A          240 KLLQSEQG  247 (454)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEecC
Confidence            99999753

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.05  E-value=0.023  Score=57.22  Aligned_cols=162  Identities=10%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731          262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR  341 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~  341 (494)
                      .....|+++.      ++.+|++|.. ..|.+++  +++.-.+..-....         .|     ..|..|||++|+-.
T Consensus        31 ~~P~~ia~~p------dG~l~V~e~~-g~I~~i~--~g~~~~~~~~~v~~---------~g-----~~~p~gia~~pdf~   87 (352)
T 2ism_A           31 EVPWALAFLP------DGGMLIAERP-GRIRLFR--EGRLSTYAELSVYH---------RG-----ESGLLGLALHPRFP   87 (352)
T ss_dssp             SCEEEEEECT------TSCEEEEETT-TEEEEEE--TTEEEEEEECCCCC---------ST-----TCSEEEEEECTTTT
T ss_pred             CCceEEEEcC------CCeEEEEeCC-CeEEEEE--CCCccEeecceEee---------cC-----CCCceeEEECCCCC
Confidence            4456777763      3448999865 5677777  33322221111000         11     24688999998622


Q ss_pred             CCceeEEEeeCCC-----cceEeeechhhcCCCcCccccccceEEecc-cCCCCCCCeEEeeCCCCeEEEeccC------
Q psy731          342 DNFRVMYFHPLAS-----TTEFAVTTKVLQNRSLDFSRSNFDFKVMGS-RGTGSQSGASSLDEETGVIFYALLV------  409 (494)
Q Consensus       342 ~g~r~LYf~plss-----~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~------  409 (494)
                      + +++||+.--..     .+++++..+   +..+..  ...-++.+.. .+......++++| .+|.||++.-.      
T Consensus        88 ~-~g~lYv~~~~~~~~~~~~v~r~~~~---~~~~~~--~~~l~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~G~~~~~~~  160 (352)
T 2ism_A           88 Q-EPYVYAYRTVAEGGLRNQVVRLRHL---GERGVL--DRVVLDGIPARPHGLHSGGRIAFG-PDGMLYVTTGEVYEREL  160 (352)
T ss_dssp             T-SCEEEEEEEECTTSSEEEEEEEEEC---SSCEEE--EEEEEEEECCCTTCCCCCCCEEEC-TTSCEEEECCCTTCGGG
T ss_pred             C-CCEEEEEEecCCCCCccEEEEEEeC---CCCcCc--eEEEEEeCCCCCCCCcCCceEEEC-CCCCEEEEECCCCCCcc
Confidence            2 26888854322     466666543   111111  0011111221 1212345789999 79999998632      


Q ss_pred             -------CCeEEEEeCCCCcccccc---------ceeeeeecCCeEecccceEEcC-CceEEEEec
Q psy731          410 -------KSGVGCWNTFRGEEYNEK---------SMGLVAEDNATLIYPSDIRVDR-TGVLWVLSN  458 (494)
Q Consensus       410 -------~~aI~~w~~~~~~~~~~~---------~~~~v~~d~~~l~~pd~~~id~-~g~Lwvlsn  458 (494)
                             ...|.++++++  ..-+.         ..++++..   +..|.++.+|+ +|.||+..+
T Consensus       161 ~~d~~~~~g~I~ri~~dG--~~p~~npf~~~~~~~~~i~a~G---~rnp~g~a~d~~~g~l~v~d~  221 (352)
T 2ism_A          161 AQDLASLGGKILRLTPEG--EPAPGNPFLGRRGARPEVYSLG---HRNPQGLAWHPKTGELFSSEH  221 (352)
T ss_dssp             GGCTTCSSSEEEEECTTS--SBCTTCTTTTCTTSCTTEEEEC---CSEECCCEECTTTCCEEEEEE
T ss_pred             ccCCCCCceEEEEEcCCC--CCCCCCcccCCCCCCccEEEEc---CCCcccEEEECCCCCEEEEEc
Confidence                   25899999987  22111         22344433   56799999999 889999964

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.05  E-value=0.22  Score=46.88  Aligned_cols=223  Identities=11%  Similarity=0.084  Sum_probs=120.0

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        +|..||+.+++......+..     ....+..+.+.     .++.+++.+.
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~--------~i~~~d~~~~~~~~~~~~~~-----~~~~i~~~~~~-----~~~~~l~~~~  160 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEAS--------TLSIWDLAAPTPRIKAELTS-----SAPACYALAIS-----PDSKVCFSCC  160 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSS--------EEEEEECCCC--EEEEEEEC-----SSSCEEEEEEC-----TTSSEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCC--------cEEEEECCCCCcceeeeccc-----CCCceEEEEEC-----CCCCEEEEEe
Confidence            455666666666554422222        68888998887433333333     22334444442     1345555554


Q ss_pred             CCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                       ..+.|.+||+.+++.-+. ..                               .......+.+..     +..+++... 
T Consensus       161 -~dg~v~~~d~~~~~~~~~~~~-------------------------------~~~~i~~~~~~~-----~~~~l~~~~-  202 (337)
T 1gxr_A          161 -SDGNIAVWDLHNQTLVRQFQG-------------------------------HTDGASCIDISN-----DGTKLWTGG-  202 (337)
T ss_dssp             -TTSCEEEEETTTTEEEEEECC-------------------------------CSSCEEEEEECT-----TSSEEEEEE-
T ss_pred             -CCCcEEEEeCCCCceeeeeec-------------------------------ccCceEEEEECC-----CCCEEEEEe-
Confidence             346799999998865443 11                               011233344432     234444443 


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||+++++.-+..                    .....+..++++|+    ++.|+.....+. .+|.+.+.. 
T Consensus       203 ~dg~i~~~d~~~~~~~~~~--------------------~~~~~v~~~~~s~~----~~~l~~~~~~~~i~~~~~~~~~-  257 (337)
T 1gxr_A          203 LDNTVRSWDLREGRQLQQH--------------------DFTSQIFSLGYCPT----GEWLAVGMESSNVEVLHVNKPD-  257 (337)
T ss_dssp             TTSEEEEEETTTTEEEEEE--------------------ECSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSSC-
T ss_pred             cCCcEEEEECCCCceEeee--------------------cCCCceEEEEECCC----CCEEEEEcCCCcEEEEECCCCC-
Confidence            4567889999887643322                    11234677899886    357777665543 444443211 


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                                  ..+..+..   .....+++. .+|.++++--....|..||..++.+.     ......    ..+..+
T Consensus       258 ------------~~~~~~~~---~~v~~~~~~-~~~~~l~~~~~dg~i~~~~~~~~~~~-----~~~~~~----~~v~~~  312 (337)
T 1gxr_A          258 ------------KYQLHLHE---SCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASI-----FQSKES----SSVLSC  312 (337)
T ss_dssp             ------------EEEECCCS---SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEE-----EEEECS----SCEEEE
T ss_pred             ------------eEEEcCCc---cceeEEEEC-CCCCEEEEecCCCcEEEEECCCCeEE-----EEecCC----CcEEEE
Confidence                        11222222   335677888 67777777777889999998874211     111111    234556


Q ss_pred             EEcCCceEEEE
Q psy731          446 RVDRTGVLWVL  456 (494)
Q Consensus       446 ~id~~g~Lwvl  456 (494)
                      .+.++|.+.+.
T Consensus       313 ~~s~~~~~l~~  323 (337)
T 1gxr_A          313 DISVDDKYIVT  323 (337)
T ss_dssp             EECTTSCEEEE
T ss_pred             EECCCCCEEEE
Confidence            67667654443

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=96.95  E-value=0.41  Score=48.47  Aligned_cols=87  Identities=11%  Similarity=-0.045  Sum_probs=58.5

Q ss_pred             eEEEcCCC-eEEEEeCCCCCC-CCCCCCEEEEEECCCCcEEEEEEcC-CCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          131 KVQSDPCD-RLWALDSGVVEG-KMEQPPSVQVYDLRQQMQIRFFQLK-EKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       131 ~i~iD~~~-~LwvlD~G~~~~-~~~~~Pklv~~dl~t~~vi~~~~lp-~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .+.+.+++ +|||.+...... +....-.|.+||+.|.+++.++.++ ..... .......++++-     +..++|++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~-~g~~p~~~~~sp-----DG~~l~v~n  143 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD-VGPYSWMNANTP-----NNADLLFFQ  143 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc-cCCCccceEECC-----CCCEEEEEe
Confidence            77777766 699988643210 0011236889999999999999987 21000 012344677753     688999998


Q ss_pred             CC-CCeEEEEEccCCcee
Q psy731          208 SG-HNHIVVYNYRTNDSH  224 (494)
Q Consensus       208 s~-~~~iIVyd~~~~~~~  224 (494)
                      .. .+.|.|+| ++++.-
T Consensus       144 ~~~~~~v~viD-~t~~~~  160 (373)
T 2mad_H          144 FAAGPAVGLVV-QGGSSD  160 (373)
T ss_pred             cCCCCeEEEEE-CCCCEE
Confidence            75 68899999 888753

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.93  E-value=0.1  Score=53.12  Aligned_cols=220  Identities=12%  Similarity=0.099  Sum_probs=119.5

Q ss_pred             ccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccccccc
Q psy731          182 EESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEE  261 (494)
Q Consensus       182 ~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~  261 (494)
                      ++-+...++-|-     .++..|++|...+.|.+||..++....+.   + ++     .+-.|              .+.
T Consensus        11 ~~~yPE~~~wd~-----~~g~~~vs~l~~g~V~~~~~~~~~~~~~~---~-~~-----~s~~g--------------~~~   62 (334)
T 2p9w_A           11 KNLTPEDTIYDR-----TRQVFYQSNLYKGRIEVYNPKTQSHFNVV---I-DG-----ASSNG--------------DGE   62 (334)
T ss_dssp             TTCCCSCEEEET-----TTTEEEEEETTTTEEEEECTTTCCEEEEC---C-TT-----TCCSS--------------CCS
T ss_pred             cccCCcCccCcC-----CCCEEEEEeccCCEEEEEcCCCCeEEEEe---c-CC-----ccccC--------------CCc
Confidence            566777888874     57899999999999999999888766661   0 00     00000              111


Q ss_pred             ccceeeEEeeecCCCCCcEEEE-ecC------------CCCeEEEEEcC----CCcEEEEecCCcccCCCCcceEEcCEE
Q psy731          262 SKFSNMVVDVTSANCDDAFLYI-ADS------------GHNHIVVYNYR----TNDSHIIHHNYLHFDPLFGDFTIGGVN  324 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI-~D~------------~~~gliVydl~----~~~swrv~~~~~~~dP~~~~~~v~G~~  324 (494)
                      .....|.++.-  +.+ +.+++ .|.            +...|++||+.    ....|.+.-......    .-...|+.
T Consensus        63 ~~~sGl~~~~~--D~~-grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~----~~~~~g~~  135 (334)
T 2p9w_A           63 QQMSGLSLLTH--DNS-KRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDE----FEKKAGKR  135 (334)
T ss_dssp             EEEEEEEESSS--SSC-CEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHH----HHHHHSSC
T ss_pred             ceeeEEEEecc--CCC-CcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccc----cccccccc
Confidence            12356667310  012 33344 553            35789999999    555666642211000    00000111


Q ss_pred             eeeecceeeeeeccCCCCCceeEEE-eeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeE
Q psy731          325 FQWQTGIHGMSLSPLTRDNFRVMYF-HPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVI  403 (494)
Q Consensus       325 f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~l  403 (494)
                         ..+.+.||+.++     ...|. .......+++|...=..   ...  ...+...-..+   .-..|++++|....|
T Consensus       136 ---~~~~nDvavD~~-----GnaYVt~s~~~~~I~rV~pdG~~---~~~--~~~~~~~~~~~---~G~nGIv~~pdg~~L  199 (334)
T 2p9w_A          136 ---PFGVVQSAQDRD-----GNSYVAFALGMPAIARVSADGKT---VST--FAWESGNGGQR---PGYSGITFDPHSNKL  199 (334)
T ss_dssp             ---CEEEEEEEECTT-----SCEEEEEEESSCEEEEECTTSCC---EEE--EEECCCCSSSC---CSCSEEEEETTTTEE
T ss_pred             ---ccCCceeEECCC-----CCEEEeCCCCCCeEEEEeCCCCE---Eee--eeecCCCcccc---cCcceEEEeCCCCEE
Confidence               124778999875     38888 45441478888653110   000  00000000011   114699999534466


Q ss_pred             EEeccCCCeEEEEeCCCCccccccceeeeee--c-CCeEecccce-EEcCCceEEEEec
Q psy731          404 FYALLVKSGVGCWNTFRGEEYNEKSMGLVAE--D-NATLIYPSDI-RVDRTGVLWVLSN  458 (494)
Q Consensus       404 y~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~--d-~~~l~~pd~~-~id~~g~Lwvlsn  458 (494)
                      +..+. ...+.++|.++  +..   ..+=.+  . ...+..|++| .+..+|.+.++++
T Consensus       200 iv~~~-~g~L~~fD~~~--pv~---~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~  252 (334)
T 2p9w_A          200 IAFGG-PRALTAFDVSK--PYA---WPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGA  252 (334)
T ss_dssp             EEESS-SSSEEEEECSS--SSC---CCEECEESSCCCCCTTEEEEEEEEETTEEEEEEE
T ss_pred             EEEcC-CCeEEEEcCCC--Ccc---eeecccccCCcccccCcccccccccCCEEEEEEc
Confidence            66666 99999999886  431   011111  1 1357789996 5667888744443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.92  E-value=0.21  Score=50.25  Aligned_cols=293  Identities=13%  Similarity=0.142  Sum_probs=144.5

Q ss_pred             eeeeeee-eCCc-EEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcC----C
Q psy731           64 LPVSLDK-WHDR-LFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDP----C  137 (494)
Q Consensus        64 ~p~gv~v-~~gR-lFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~----~  137 (494)
                      -|.++++ .+|| +||+--   .   ..|..+..+..          ..+++-+..  ...+.+.-...+|.+++    .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~---~---G~i~~~~~~g~----------~~~~~~~~~--~v~~~g~~g~~gia~~pdf~~~   80 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLR---G---GELRHWQAGKG----------LSAPLSGVP--DVWAHGQGGLLDVVLAPDFAQS   80 (353)
T ss_dssp             SEEEEEECSTTCCEEEEET---T---TEEEEEETTTE----------ECCCCBSCC--CCCCSTTCSEEEEEECTTHHHH
T ss_pred             CcEEEEEcCCCCEEEEEeC---C---ceEEEEeCCCc----------eeeEecCCc--ccccCCCCCceeEEECCCCCCC
Confidence            4788888 5889 999863   2   35666653211          112222110  00122333457889987    6


Q ss_pred             CeEEEEeCCCCCCCCCCCCEEEEEECCCC--cEE--EEE--EcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC--
Q psy731          138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQ--MQI--RFF--QLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG--  209 (494)
Q Consensus       138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~--~vi--~~~--~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~--  209 (494)
                      ++|||.++...... ...-+|.+|++..+  ++-  +.+  .+|.  .......-..++++      .++++|||.-.  
T Consensus        81 g~lYv~~~~~~~~g-~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~--~~~~~h~~~~l~~~------pdG~Lyv~~Gd~~  151 (353)
T 2g8s_A           81 RRIWLSYSEVGDDG-KAGTAVGYGRLSDDLSKVTDFRTVFRQMPK--LSTGNHFGGRLVFD------GKGYLFIALGENN  151 (353)
T ss_dssp             CEEEEEEEEECSSS-CEEEEEEEEEECTTSSBEEEEEEEEECSSC--CBSSSCCCCCEEEC------SSSEEEEEECCTT
T ss_pred             CEEEEEEeCCCCCC-CceeEEEEEEECCCCCCCCceEEEEEECCC--CCCCcccCccEEEC------CCCcEEEEECCCC
Confidence            89999987532100 01237888887654  222  111  2332  11234456788886      36799999522  


Q ss_pred             -----------CCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731          210 -----------HNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       210 -----------~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                                 .++|+.+|.+. +   + ..++|...+        |...|+|...       ......+++|.     .
T Consensus       152 ~~~~~q~~~~~~g~I~ri~~dG-~---~p~~npf~~~~--------~~~~~i~a~G-------~rnp~gl~~d~-----~  207 (353)
T 2g8s_A          152 QRPTAQDLDKLQGKLVRLTDQG-E---IPDDNPFIKES--------GVRAEIWSYG-------IRNPQGMAMNP-----W  207 (353)
T ss_dssp             CGGGGGCTTSCTTEEEEEETTS-C---CCTTCTTTTST--------TSCTTEEEEC-------CSEEEEEEEET-----T
T ss_pred             CCCccCCCCCCCeEEEEECCCC-C---CCCCCCCcCCC--------CCCccEEEEc-------CcCccceEEEC-----C
Confidence                       34677777542 1   2 233332211        1112222211       12245677774     2


Q ss_pred             CcEEEEecCCCCe---EEEEEcCCCcEEEEecCCcccCCC---------CcceEEcCEEeeeecceeeeeeccCCC--CC
Q psy731          278 DAFLYIADSGHNH---IVVYNYRTNDSHIIHHNYLHFDPL---------FGDFTIGGVNFQWQTGIHGMSLSPLTR--DN  343 (494)
Q Consensus       278 ~~~~YI~D~~~~g---liVydl~~~~swrv~~~~~~~dP~---------~~~~~v~G~~f~~~~Gi~gIaLsp~~~--~g  343 (494)
                      .+.+|++|.+..+   |-+..-..+--|..-+....+++.         ...+..--..+.......||++.....  .-
T Consensus       208 ~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~  287 (353)
T 2g8s_A          208 SNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQW  287 (353)
T ss_dssp             TTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGG
T ss_pred             CCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCccc
Confidence            4678999987532   222111112222221100000000         000000000111123567788853210  00


Q ss_pred             ceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEe-ccCCCeEEEEeC
Q psy731          344 FRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYA-LLVKSGVGCWNT  418 (494)
Q Consensus       344 ~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~-~~~~~aI~~w~~  418 (494)
                      ...||+.-+.+.+++++..+   +...     ....+.+...  .....++++| .+|.||++ +-....|++..+
T Consensus       288 ~g~l~v~~~~~~~v~~~~~~---~~~~-----~~~~~~~~~~--~~rp~~v~~~-pdG~lyv~td~~~g~I~ri~~  352 (353)
T 2g8s_A          288 QQKLFIGALKDKDVIVMSVN---GDKV-----TEDGRILTDR--GQRIRDVRTG-PDGYLYVLTDESSGELLKVSP  352 (353)
T ss_dssp             TTEEEEEETTTTEEEEEEEE---TTEE-----EEEEEESGGG--CCCEEEEEEC-TTSCEEEEECSTTEEEEEEEC
T ss_pred             CCcEEEEEccCCEEEEEEeC---CCeE-----eeeEEcccCC--CCceeEEEEC-CCCcEEEEEeCCCCEEEEEeC
Confidence            23899999999999999765   2111     0111222222  1346789999 79999996 556777877654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.84  E-value=0.47  Score=51.01  Aligned_cols=73  Identities=7%  Similarity=0.058  Sum_probs=51.6

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-----CC
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----HN  211 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----~~  211 (494)
                      .++|++.... .        .|+++|++|++++-++.++..  .........++|+       ++.||+...+     .+
T Consensus       115 ~~~v~v~~~d-g--------~l~alD~~tG~~~W~~~~~~~--~~~~~~~~~P~v~-------~g~v~vg~~~~~~~~~g  176 (571)
T 2ad6_A          115 AGQIVKKQAN-G--------HLLALDAKTGKINWEVEVCDP--KVGSTLTQAPFVA-------KDTVLMGCSGAELGVRG  176 (571)
T ss_dssp             TTEEEEECTT-S--------EEEEEETTTCCEEEEEECCCG--GGTCBCCSCCEEE-------TTEEEEECBCGGGTCCC
T ss_pred             CCEEEEEeCC-C--------EEEEEECCCCCEEEEecCCCC--CccceeccCCEEE-------CCEEEEEecCCccCCCC
Confidence            5688876432 2        799999999999988887651  1111333455553       4678998765     67


Q ss_pred             eEEEEEccCCc-eeEEe
Q psy731          212 HIVVYNYRTND-SHIIH  227 (494)
Q Consensus       212 ~iIVyd~~~~~-~~rv~  227 (494)
                      .|..||.++|+ .|++.
T Consensus       177 ~v~a~D~~tG~~~W~~~  193 (571)
T 2ad6_A          177 AVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCcEEEEEc
Confidence            89999999877 68884

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=96.82  E-value=0.071  Score=55.25  Aligned_cols=209  Identities=12%  Similarity=0.112  Sum_probs=116.6

Q ss_pred             EeeEEEcCCC-eEEEEeCC-CCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          129 VVKVQSDPCD-RLWALDSG-VVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       129 V~~i~iD~~~-~LwvlD~G-~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ...+.+++++ +|||...+ ..        .|.++|+.++++++++.+|..          ..+..      .....|++
T Consensus       139 P~~~a~spDGk~lyVan~~~~~--------~VsVID~~t~~vv~tI~v~g~----------~~~~P------~g~~~~~~  194 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAP--------AVGVVDLEGKAFKRMLDVPDC----------YHIFP------TAPDTFFM  194 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSC--------EEEEEETTTTEEEEEEECCSE----------EEEEE------EETTEEEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCC--------eEEEEECCCCcEEEEEECCCc----------ceeec------CCCceeEE
Confidence            3446677666 58888754 33        799999999999999988761          01111      12234446


Q ss_pred             eCCCCeEEEEEccC-CceeEEec-CccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          207 DSGHNHIVVYNYRT-NDSHIIHH-NYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       207 Ds~~~~iIVyd~~~-~~~~rv~~-~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      -+..+.++++++.+ ++. .... +.+  ||.                       ....+.+...+.    -+..++|++
T Consensus       195 ~~~DG~~~~v~~~~~g~v-~~~~~~~~--~~~-----------------------~~~~~~~~~~~~----~dG~~~~vs  244 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTP-EITHTEVF--HPE-----------------------DEFLINHPAYSQ----KAGRLVWPT  244 (386)
T ss_dssp             EETTSCEEEEECCSSSCC-EEEECCCC--SCT-----------------------TSCBCSCCEEET----TTTEEEEEB
T ss_pred             ECCCCCEEEEECCCCCeE-EEeeccee--ccc-----------------------cccccccceeEc----CCCcEEEEe
Confidence            66777888888876 554 1111 111  110                       011122233331    134577888


Q ss_pred             cCCCCeEEEEEcCCCcEEEEecCC--cccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeC---------C
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHHNY--LHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPL---------A  353 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~~~--~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pl---------s  353 (494)
                      +  +..+.|+|+.++..- +.+..  +.....     ..|.   -+.|.-.++++|+    .+.||..--         .
T Consensus       245 ~--~g~V~v~d~~~~~~~-v~~~~~~~~~~~~-----~~g~---~p~g~q~~a~~~~----~~~lyV~~~~~~~~~hk~~  309 (386)
T 3sjl_D          245 Y--TGKIHQIDLSSGDAK-FLPAVEALTEAER-----ADGW---RPGGWQQVAYHRA----LDRIYLLVDQRDEWRHKTA  309 (386)
T ss_dssp             T--TSEEEEEECTTSSCE-ECCCEESSCHHHH-----HTTE---EECSSSCEEEETT----TTEEEEEEEECCTTCTTSC
T ss_pred             C--CCEEEEEECCCCcce-eecceeccccccc-----cccc---cCCCcceeeECCC----CCeEEEEeccccccccCCC
Confidence            7  345888888766532 22211  110000     0011   1345666888876    368888532         1


Q ss_pred             CcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC--eEEEeccCCCeEEEEeCCCC
Q psy731          354 STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG--VIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       354 s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G--~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +.+++.|.++-.+        ..+.+. +|.+     ..+++++ .+|  .||.+.-..+.|..+|+.++
T Consensus       310 ~~~V~viD~~t~k--------v~~~i~-vg~~-----~~~lavs-~D~~~~ly~tn~~~~~VsViD~~t~  364 (386)
T 3sjl_D          310 SRFVVVLDAKTGE--------RLAKFE-MGHE-----IDSINVS-QDEKPLLYALSTGDKTLYIHDAESG  364 (386)
T ss_dssp             EEEEEEEETTTCC--------EEEEEE-EEEE-----ECEEEEC-SSSSCEEEEEETTTTEEEEEETTTC
T ss_pred             CCEEEEEECCCCe--------EEEEEE-CCCC-----cceEEEC-CCCCeEEEEEcCCCCeEEEEECCCC
Confidence            3456666554331        112222 3433     4689998 565  47777888999999999874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.75  E-value=0.15  Score=50.67  Aligned_cols=188  Identities=9%  Similarity=0.095  Sum_probs=115.2

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee---CCCCeEEEEEccCCceeEEecCcccc
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD---SGHNHIVVYNYRTNDSHIIHHNYLHF  233 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD---s~~~~iIVyd~~~~~~~rv~~~~~~~  233 (494)
                      +|.++++...+..+-...+.          ..+.+       .+.++|.+|   .+...|.+.++......++.++..  
T Consensus        89 ~Iy~i~~dg~~~~~l~~~~~----------~~~s~-------~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--  149 (302)
T 3s25_A           89 SLCRIKRNGHGSTVLDPDPC----------IYASL-------IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--  149 (302)
T ss_dssp             EEEEEETTSCCCEEEECSCE----------EEEEE-------ETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--
T ss_pred             eEEEEeCCCCcceEeecCCc----------cEEEE-------eCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--
Confidence            68888887775333111111          13334       467999999   677889999998777777743211  


Q ss_pred             CCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCC
Q psy731          234 DPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDP  313 (494)
Q Consensus       234 dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP  313 (494)
                                                       +.++.     ....+|.+|.+.+.|.+.++.++...++...     +
T Consensus       150 ---------------------------------~~~~~-----~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~-----~  186 (302)
T 3s25_A          150 ---------------------------------FTCNT-----SDRYFYYNNPKNGQLYRYDTASQSEALFYDC-----N  186 (302)
T ss_dssp             ---------------------------------CCSEE-----ETTEEEEECTTTCCEEEEETTTTEEEEEECS-----C
T ss_pred             ---------------------------------eEeeE-----ECCEEEEEeCCCceEEEEECCCCCEEEEeCC-----C
Confidence                                             11122     2457788887889999999998887777421     1


Q ss_pred             CCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC-cceEeeechhhcCCCcCccccccceEEecccCCCCCCC
Q psy731          314 LFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS-TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSG  392 (494)
Q Consensus       314 ~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss-~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~  392 (494)
                                .        .++++|+    +++|||.-... .+++++...    .+        ..+.+-+.      .
T Consensus       187 ----------~--------~~~~~P~----g~~iy~t~~~~~~~I~~~~ld----G~--------~~~~Lt~~------~  226 (302)
T 3s25_A          187 ----------C--------YKPVVLD----DTNVYYMDVNRDNAIVHVNIN----NP--------NPVVLTEA------N  226 (302)
T ss_dssp             ----------E--------EEEEEEE----TTEEEEEEGGGTTEEEEECSS----SC--------CCEECSCS------C
T ss_pred             ----------c--------cceeeec----CCEEEEEEcCCCcEEEEEECC----CC--------CeEEEeCC------C
Confidence                      0        1235566    36999976543 356666432    11        11222221      1


Q ss_pred             eEEeeCCCCeEEEe-ccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEec
Q psy731          393 ASSLDEETGVIFYA-LLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       393 g~~~D~~~G~ly~~-~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsn  458 (494)
                      ...+|+..+.||++ +-....|.+-+.++      .+.++|.++ +-    .++.+ .+++||.+..
T Consensus       227 ~~~~~~~g~~Iy~~~~~~~~~i~~~~~DG------~~r~~l~~~-~~----~~i~i-~~d~Iy~td~  281 (302)
T 3s25_A          227 IEHYNVYGSLIFYQRGGDNPALCVVKNDG------TGFKELAKG-EF----CNINV-TSQYVYFTDF  281 (302)
T ss_dssp             EEEEEEETTEEEEEECSSSCEEEEEETTS------CCCEEEEES-CE----EEEEE-CSSEEEEEET
T ss_pred             cceEEECCCEEEEEECCCCcEEEEEECCC------CccEEeeCC-cc----ceEEE-eCCEEEEEEC
Confidence            23477667899997 66678999999998      244566654 21    15666 4568998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.72  E-value=0.11  Score=53.11  Aligned_cols=122  Identities=10%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             ecceeeeeeccCCCCCceeEEE--eeCCCcceEeeechhhc--CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeE
Q psy731          328 QTGIHGMSLSPLTRDNFRVMYF--HPLASTTEFAVTTKVLQ--NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVI  403 (494)
Q Consensus       328 ~~Gi~gIaLsp~~~~g~r~LYf--~plss~~ly~V~T~~L~--~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~l  403 (494)
                      ..|.+|||++|+-.. +++||+  +.-+..++++..-+-=+  ...+..  ...-++.+. .+..-....++++ .+|.|
T Consensus        79 ~~GllGia~~Pdf~~-~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~--~~~i~~~~p-~~~~H~g~~l~fg-pDG~L  153 (347)
T 3das_A           79 EGGLLGIALSPDYAS-DHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGA--PDTVFRGIP-KGVIHNGGRIAFG-PDKML  153 (347)
T ss_dssp             TBSEEEEEECTTHHH-HCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCC--CEEEEEEEC-CCSSCCCCCEEEC-TTSCE
T ss_pred             CCCceeeEecccccc-CCEEEEEEecCCCCEEEEEEeCCCCcccccCCC--cEEEEEcCC-CCCCccCccccCC-CCCCE
Confidence            368999999985211 247776  33445567666432100  011111  001111121 1222345679999 79999


Q ss_pred             EEecc-------------CCCeEEEEeCCCCc----cccccceeeeeecCCeEecccceEEcCCceEEEEecC
Q psy731          404 FYALL-------------VKSGVGCWNTFRGE----EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSNK  459 (494)
Q Consensus       404 y~~~~-------------~~~aI~~w~~~~~~----~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsnr  459 (494)
                      |++.-             ...+|.+.++++..    ||.  ..++.+.   .+.-|.++.+|++|.||+..|.
T Consensus       154 yvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~--~~~i~a~---G~RNp~Gla~dp~G~L~~~d~g  221 (347)
T 3das_A          154 YAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFP--GSPVYSY---GHRNVQGLAWDDKQRLFASEFG  221 (347)
T ss_dssp             EEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSST--TCCEEEB---CCSBCCEEEECTTCCEEEEECC
T ss_pred             EEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCC--CCeEEee---CCCCcceEEECCCCCEEEEecC
Confidence            99952             36899999998731    121  1234443   3567999999999999999754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.59  E-value=0.49  Score=44.38  Aligned_cols=171  Identities=11%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  236 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~  236 (494)
                      .|..||+++++.++++.-.       ...+..+.+..     +..+++.+. ..+.|.+||+.+++..+...        
T Consensus       164 ~v~~~d~~~~~~~~~~~~~-------~~~i~~~~~~~-----~~~~l~~~~-~dg~i~~~d~~~~~~~~~~~--------  222 (337)
T 1gxr_A          164 NIAVWDLHNQTLVRQFQGH-------TDGASCIDISN-----DGTKLWTGG-LDNTVRSWDLREGRQLQQHD--------  222 (337)
T ss_dssp             CEEEEETTTTEEEEEECCC-------SSCEEEEEECT-----TSSEEEEEE-TTSEEEEEETTTTEEEEEEE--------
T ss_pred             cEEEEeCCCCceeeeeecc-------cCceEEEEECC-----CCCEEEEEe-cCCcEEEEECCCCceEeeec--------
Confidence            5888899998888766432       23344444421     344555443 45789999999887654411        


Q ss_pred             CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCc
Q psy731          237 FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFG  316 (494)
Q Consensus       237 ~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~  316 (494)
                                             .......+.+..     +..++++.. .+..|.+||+.+++..++..+         
T Consensus       223 -----------------------~~~~v~~~~~s~-----~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~---------  264 (337)
T 1gxr_A          223 -----------------------FTSQIFSLGYCP-----TGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH---------  264 (337)
T ss_dssp             -----------------------CSSCEEEEEECT-----TSSEEEEEE-TTSCEEEEETTSSCEEEECCC---------
T ss_pred             -----------------------CCCceEEEEECC-----CCCEEEEEc-CCCcEEEEECCCCCeEEEcCC---------
Confidence                                   011123333321     234455543 355789999998876544311         


Q ss_pred             ceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEE
Q psy731          317 DFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASS  395 (494)
Q Consensus       317 ~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~  395 (494)
                                 ...+..++.+|++    +.|+.....+. ++|.+++...             +...+..   .....++
T Consensus       265 -----------~~~v~~~~~~~~~----~~l~~~~~dg~i~~~~~~~~~~-------------~~~~~~~---~~v~~~~  313 (337)
T 1gxr_A          265 -----------ESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYGAS-------------IFQSKES---SSVLSCD  313 (337)
T ss_dssp             -----------SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCE-------------EEEEECS---SCEEEEE
T ss_pred             -----------ccceeEEEECCCC----CEEEEecCCCcEEEEECCCCeE-------------EEEecCC---CcEEEEE
Confidence                       1236778888862    56665554443 4554433111             1112222   2345677


Q ss_pred             eeCCCCeEEEeccCCCeEEEEeC
Q psy731          396 LDEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       396 ~D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      +. .+|.++++--....|..|+.
T Consensus       314 ~s-~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          314 IS-VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EC-TTSCEEEEEETTSCEEEEEE
T ss_pred             EC-CCCCEEEEecCCCeEEEEEE
Confidence            87 56766666667778888873

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.59  E-value=0.76  Score=46.56  Aligned_cols=177  Identities=10%  Similarity=0.053  Sum_probs=95.6

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE-EeeC-CCCeEEEEEccCCceeEEecCcccc
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY-IADS-GHNHIVVYNYRTNDSHIIHHNYLHF  233 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY-ItDs-~~~~iIVyd~~~~~~~rv~~~~~~~  233 (494)
                      +.|..||+.+++..+....+        .....++..     .+..+++ .+.. +...|.+||+.++...++..+..  
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~--------~~~~~~~~s-----pdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~--  267 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFP--------RHNGAPAFS-----PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS--  267 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCS--------SCEEEEEEC-----TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS--
T ss_pred             cEEEEEECCCCcEEEeecCC--------CcccCEEEc-----CCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC--
Confidence            58888999888875422222        123333332     2344444 4432 34569999999998877732111  


Q ss_pred             CCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC-CCCeEEEEEcCCCcEEEEecCCcccC
Q psy731          234 DPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFD  312 (494)
Q Consensus       234 dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~-~~~gliVydl~~~~swrv~~~~~~~d  312 (494)
                                                   ....+...  +.  ++..+|.++- +...|.++|+.+++..++....    
T Consensus       268 -----------------------------~~~~~~~s--pd--g~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~----  310 (415)
T 2hqs_A          268 -----------------------------NNTEPTWF--PD--SQNLAFTSDQAGRPQVYKVNINGGAPQRITWEG----  310 (415)
T ss_dssp             -----------------------------CEEEEEEC--TT--SSEEEEEECTTSSCEEEEEETTSSCCEECCCSS----
T ss_pred             -----------------------------cccceEEC--CC--CCEEEEEECCCCCcEEEEEECCCCCEEEEecCC----
Confidence                                         11222222  10  2345556642 3457889999888754443211    


Q ss_pred             CCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC--CcceEeeechhhcCCCcCccccccceEEecccCCCCC
Q psy731          313 PLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA--STTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQ  390 (494)
Q Consensus       313 P~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls--s~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~q  390 (494)
                                      ..+..+++||+    ++.|+|....  ...++....+   ...         .+.+...   ..
T Consensus       311 ----------------~~~~~~~~spd----G~~l~~~~~~~g~~~i~~~d~~---~~~---------~~~l~~~---~~  355 (415)
T 2hqs_A          311 ----------------SQNQDADVSSD----GKFMVMVSSNGGQQHIAKQDLA---TGG---------VQVLSST---FL  355 (415)
T ss_dssp             ----------------SEEEEEEECTT----SSEEEEEEECSSCEEEEEEETT---TCC---------EEECCCS---SS
T ss_pred             ----------------CcccCeEECCC----CCEEEEEECcCCceEEEEEECC---CCC---------EEEecCC---CC
Confidence                            11446889987    3688886543  1245544332   111         1112111   13


Q ss_pred             CCeEEeeCCCC-eEEEeccCCC--eEEEEeCCC
Q psy731          391 SGASSLDEETG-VIFYALLVKS--GVGCWNTFR  420 (494)
Q Consensus       391 s~g~~~D~~~G-~ly~~~~~~~--aI~~w~~~~  420 (494)
                      ....+.. .+| .|+++.-...  .|..||.++
T Consensus       356 ~~~~~~s-pdg~~l~~~s~~~~~~~l~~~d~~g  387 (415)
T 2hqs_A          356 DETPSLA-PNGTMVIYSSSQGMGSVLNLVSTDG  387 (415)
T ss_dssp             CEEEEEC-TTSSEEEEEEEETTEEEEEEEETTS
T ss_pred             cCCeEEc-CCCCEEEEEEcCCCccEEEEEECCC
Confidence            4566777 455 5666665444  799999887

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.51  E-value=0.47  Score=43.26  Aligned_cols=79  Identities=8%  Similarity=-0.034  Sum_probs=46.6

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCC-CcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQ-QMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t-~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      |..+...++++..++.. ..        +|.+||+.+ ++..+....+      ....+.++.+.    ..++..++...
T Consensus        44 v~~~~~spdg~~l~~~~-~~--------~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~s----pdg~~l~~~~~  104 (297)
T 2ojh_A           44 FEAPNWSPDGKYLLLNS-EG--------LLYRLSLAGDPSPEKVDTGF------ATICNNDHGIS----PDGALYAISDK  104 (297)
T ss_dssp             CEEEEECTTSSEEEEEE-TT--------EEEEEESSSCCSCEECCCTT------CCCBCSCCEEC----TTSSEEEEEEC
T ss_pred             eEeeEECCCCCEEEEEc-CC--------eEEEEeCCCCCCceEecccc------ccccccceEEC----CCCCEEEEEEe
Confidence            44566777777666642 11        788888888 7765432211      12345556653    22344455552


Q ss_pred             C--CCCeEEEEEccCCceeEE
Q psy731          208 S--GHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       208 s--~~~~iIVyd~~~~~~~rv  226 (494)
                      .  +...|.++|+.++...++
T Consensus       105 ~~~~~~~l~~~~~~~~~~~~~  125 (297)
T 2ojh_A          105 VEFGKSAIYLLPSTGGTPRLM  125 (297)
T ss_dssp             TTTSSCEEEEEETTCCCCEEC
T ss_pred             CCCCcceEEEEECCCCceEEe
Confidence            2  456788888888877666

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.51  E-value=0.3  Score=53.53  Aligned_cols=229  Identities=10%  Similarity=0.102  Sum_probs=121.1

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+..|..++|||-- . .        .|.+||..+++...    +..   .....+..+. +      .++.+||+-
T Consensus        64 ~i~~i~~d~~g~lWigT-~-~--------Gl~~yd~~~~~f~~----~~~---~~~~~i~~i~-~------~~g~lWigt  119 (758)
T 3ott_A           64 RIYCGVIIDNTYLYMGT-D-N--------GILVYNYRADRYEQ----PET---DFPTDVRTMA-L------QGDTLWLGA  119 (758)
T ss_dssp             CEEEEEEETTTEEEEEE-T-T--------EEEEEETTTTEECC----CSC---CCCSCEEEEE-E------ETTEEEEEE
T ss_pred             eEEEEEEcCCCcEEEEe-C-C--------CeEEEeCCCCEEEC----ccc---CCCceEEEEE-e------cCCcEEEEc
Confidence            36677889999999863 1 1        58899999986532    220   0111122221 1      357899985


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      ..  +|..||..+++..++....                         ..+ +......|..|.      ++.++|.-  
T Consensus       120 ~~--Gl~~~~~~~~~~~~~~~~~-------------------------~~l-~~~~i~~i~~d~------~g~lWigt--  163 (758)
T 3ott_A          120 LN--GLYTYQLQSRKLTSFDTRR-------------------------NGL-PNNTIYSIIRTK------DNQIYVGT--  163 (758)
T ss_dssp             TT--EEEEEETTTCCEEEECHHH-------------------------HCC-SCSCEEEEEECT------TCCEEEEE--
T ss_pred             CC--cceeEeCCCCeEEEeccCC-------------------------CCc-CCCeEEEEEEcC------CCCEEEEe--
Confidence            43  8999999988877662100                         000 111233445552      46677763  


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN  367 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~  367 (494)
                      ..||..||.++++.-++..+...  ...            ..-|..|..+..    ++.|+...-  ..+|....+.   
T Consensus       164 ~~Gl~~~~~~~~~~~~~~~~~~~--~~~------------~~~i~~i~~d~~----~~~lWigt~--~Gl~~~~~~~---  220 (758)
T 3ott_A          164 YNGLCRYIPSNGKFEGIPLPVHS--SQS------------NLFVNSLLEDTT----RQCVWIGTE--GYLFQYFPST---  220 (758)
T ss_dssp             TTEEEEEETTTTEEEEECCCCCT--TCS------------SCCEEEEEEETT----TTEEEEEEE--EEEEEEETTT---
T ss_pred             CCCHhhCccCCCceEEecCCCcc--ccc------------cceeEEEEEECC----CCEEEEEEC--CCCeEEcCCC---
Confidence            36999999988765444322100  000            001333444322    134555432  1344443210   


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecC---CeEe--cc
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN---ATLI--YP  442 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~---~~l~--~p  442 (494)
                      ..+      ..+..+..    .....+..| ++|.|+++.  .+++.+++++++ .+     ..+..+.   ..|.  -.
T Consensus       221 ~~~------~~~~~l~~----~~i~~i~~d-~~g~lWigT--~~Gl~~~~~~~~-~~-----~~~~~~~~~~~~l~~~~i  281 (758)
T 3ott_A          221 GQI------KQTEAFHN----NSIKSLALD-GNGDLLAGT--DNGLYVYHNDTT-PL-----QHIIHDSRNIQSLTNNII  281 (758)
T ss_dssp             TEE------EEEEEEEE----EEEEEEEEC-TTCCEEEEE--TTEEEEECCTTS-CC-----EEECCCTTCTTSCSCSCE
T ss_pred             CeE------EeccCCCC----CeEEEEEEc-CCCCEEEEe--CCceeEEecCCC-cE-----EEEEcCCCCcCcCCcCeE
Confidence            000      00111111    113457889 899999997  469999998763 22     2222111   1110  12


Q ss_pred             cceEEcCCceEEEEec
Q psy731          443 SDIRVDRTGVLWVLSN  458 (494)
Q Consensus       443 d~~~id~~g~Lwvlsn  458 (494)
                      -.+..|++|.|||-+.
T Consensus       282 ~~i~~D~~g~lWiGT~  297 (758)
T 3ott_A          282 WNIFADQEHNIWLGTD  297 (758)
T ss_dssp             EEEEECTTCCEEEEES
T ss_pred             EEEEEcCCCCEEEEeC
Confidence            3566789999999874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.50  E-value=0.59  Score=51.39  Aligned_cols=74  Identities=9%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcC-CCccccccCCccceEEEeecCCCCCcEEEEeeCC-----C
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLK-EKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----H  210 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp-~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----~  210 (494)
                      .++|++-...         -.|+++|.+|++++-++... ..  .........++|.       ++.||+.-++     .
T Consensus       121 ~g~v~v~~~d---------g~l~AlDa~TG~~~W~~~~~~~~--~~~~~~~~sP~v~-------~g~v~vg~~~~~~~~~  182 (689)
T 1yiq_A          121 KGKVYVGVLD---------GRLEAIDAKTGQRAWSVDTRADH--KRSYTITGAPRVV-------NGKVVIGNGGAEFGVR  182 (689)
T ss_dssp             TTEEEEECTT---------SEEEEEETTTCCEEEEEECCSCT--TSCCBCCSCCEEE-------TTEEEECCBCTTTCCB
T ss_pred             CCEEEEEccC---------CEEEEEECCCCCEeeeecCcCCC--CCCccccCCcEEE-------CCEEEEEeCCCccCCC
Confidence            5678776432         17999999999999888875 20  0111223344552       5678887553     4


Q ss_pred             CeEEEEEccCCc-eeEEec
Q psy731          211 NHIVVYNYRTND-SHIIHH  228 (494)
Q Consensus       211 ~~iIVyd~~~~~-~~rv~~  228 (494)
                      +.|+.||.++|+ .|++..
T Consensus       183 g~v~a~D~~tG~~~W~~~~  201 (689)
T 1yiq_A          183 GYVTAYDAETGKEAWRFYT  201 (689)
T ss_dssp             CEEEEEETTTCCEEEEEES
T ss_pred             CEEEEEECCCCcEEEEecc
Confidence            689999999988 588853

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=96.48  E-value=0.13  Score=50.89  Aligned_cols=201  Identities=11%  Similarity=0.049  Sum_probs=108.0

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+...+++++.+.=. ..       -.|..||+++++.++.+.-..       +....+.+.     ..+...+++-+
T Consensus       142 V~~v~~spdg~~l~sgs-~d-------g~v~iwd~~~~~~~~~~~~h~-------~~v~~v~~s-----~~~~~~~~s~~  201 (357)
T 4g56_B          142 VKTLSVFSDGTQAVSGG-KD-------FSVKVWDLSQKAVLKSYNAHS-------SEVNCVAAC-----PGKDTIFLSCG  201 (357)
T ss_dssp             EEEEEECSSSSEEEEEE-TT-------SCEEEEETTTTEEEEEECCCS-------SCEEEEEEC-----TTCSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEe-CC-------CeEEEEECCCCcEEEEEcCCC-------CCEEEEEEc-----cCCCceeeeec
Confidence            45556666665444211 11       157889999999888775322       333444431     13334566666


Q ss_pred             CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      ..+.|.+||+++++.-+.-.                            ..........+.....    .+.++... ..+
T Consensus       202 ~dg~v~~wd~~~~~~~~~~~----------------------------~~~~~~~v~~v~~sp~----~~~~la~g-~~d  248 (357)
T 4g56_B          202 EDGRILLWDTRKPKPATRID----------------------------FCASDTIPTSVTWHPE----KDDTFACG-DET  248 (357)
T ss_dssp             TTSCEEECCTTSSSCBCBCC----------------------------CTTCCSCEEEEEECTT----STTEEEEE-ESS
T ss_pred             cCCceEEEECCCCceeeeee----------------------------eccccccccchhhhhc----ccceEEEe-ecc
Confidence            67789999998876533200                            0001111223333210    12233332 235


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcC
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQN  367 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~  367 (494)
                      ..|.+||+++++.-+....                   ....|..|+.+|++   .+.|.-...-++ ++|.+.+.    
T Consensus       249 ~~i~~wd~~~~~~~~~~~~-------------------~~~~v~~l~~sp~~---~~~lasgs~D~~i~iwd~~~~----  302 (357)
T 4g56_B          249 GNVSLVNIKNPDSAQTSAV-------------------HSQNITGLAYSYHS---SPFLASISEDCTVAVLDADFS----  302 (357)
T ss_dssp             SCEEEEESSCGGGCEEECC-------------------CSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTSC----
T ss_pred             cceeEEECCCCcEeEEEec-------------------cceeEEEEEEcCCC---CCEEEEEeCCCEEEEEECCCC----
Confidence            6688999987653222110                   01347778998863   344544444332 55543321    


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                               +.++.+|.+   ....++++.|.+|.++.+--....|..|+...
T Consensus       303 ---------~~~~~~~H~---~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          303 ---------EVFRDLSHR---DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ---------EEEEECCCS---SCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             ---------cEeEECCCC---CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence                     223444544   23456788766787777777888999999754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.46  E-value=0.72  Score=50.60  Aligned_cols=74  Identities=11%  Similarity=0.028  Sum_probs=51.2

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-----CC
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----HN  211 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----~~  211 (494)
                      .++|++-... .        .|+++|++|++++-++..+.+ ..........++|+       ++.+|+..++     .+
T Consensus       128 ~~~v~v~~~d-g--------~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~~p~v~-------~~~v~v~~~~~~~~~~g  190 (677)
T 1kb0_A          128 KGKVYVGAWD-G--------RLIALDAATGKEVWHQNTFEG-QKGSLTITGAPRVF-------KGKVIIGNGGAEYGVRG  190 (677)
T ss_dssp             TTEEEEECTT-S--------EEEEEETTTCCEEEEEETTTT-CCSSCBCCSCCEEE-------TTEEEECCBCTTTCCBC
T ss_pred             CCEEEEEcCC-C--------EEEEEECCCCCEEeeecCCcC-cCcCcccccCcEEE-------CCEEEEEecccccCCCC
Confidence            5688876432 2        799999999999998987621 01112233455553       5688998764     57


Q ss_pred             eEEEEEccCCc-eeEEe
Q psy731          212 HIVVYNYRTND-SHIIH  227 (494)
Q Consensus       212 ~iIVyd~~~~~-~~rv~  227 (494)
                      .|.+||.++|+ .|++.
T Consensus       191 ~v~a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          191 YITAYDAETGERKWRWF  207 (677)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCcEEEEec
Confidence            89999999887 68884

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=96.46  E-value=0.72  Score=46.72  Aligned_cols=172  Identities=7%  Similarity=0.071  Sum_probs=94.1

Q ss_pred             CCCcEEEEeeC-CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731          198 CDNAFLYIADS-GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC  276 (494)
Q Consensus       198 c~~~~vYItDs-~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c  276 (494)
                      +++..+|.+.. +...|.+||+.+++..++..+..                               ....+++.  +.  
T Consensus       189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~-------------------------------~~~~~~~s--pd--  233 (415)
T 2hqs_A          189 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR-------------------------------HNGAPAFS--PD--  233 (415)
T ss_dssp             TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSS-------------------------------CEEEEEEC--TT--
T ss_pred             CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCC-------------------------------cccCEEEc--CC--
Confidence            35667777755 45689999999998877732110                               11222332  10  


Q ss_pred             CCcEEEEecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-C
Q psy731          277 DDAFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-S  354 (494)
Q Consensus       277 ~~~~~YI~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-s  354 (494)
                      ++..+|..... ...|.+||+++++..++....                    ..+..++.||+    ++.|+|..-. +
T Consensus       234 g~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~--------------------~~~~~~~~spd----g~~l~~~s~~~g  289 (415)
T 2hqs_A          234 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--------------------SNNTEPTWFPD----SQNLAFTSDQAG  289 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCEEECCCCS--------------------SCEEEEEECTT----SSEEEEEECTTS
T ss_pred             CCEEEEEEecCCCceEEEEECCCCCEEeCcCCC--------------------CcccceEECCC----CCEEEEEECCCC
Confidence            12344454432 356999999988865553221                    11456888887    3688886642 2


Q ss_pred             -cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC--CCeEEEEeCCCCccccccceee
Q psy731          355 -TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV--KSGVGCWNTFRGEEYNEKSMGL  431 (494)
Q Consensus       355 -~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~~~~~~  431 (494)
                       .++|.++.+-   ..         .+.+-..+  ......+++|....|+++...  ...|..||.++|+      ...
T Consensus       290 ~~~i~~~d~~~---~~---------~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~~~  349 (415)
T 2hqs_A          290 RPQVYKVNING---GA---------PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------VQV  349 (415)
T ss_dssp             SCEEEEEETTS---SC---------CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------EEE
T ss_pred             CcEEEEEECCC---CC---------EEEEecCC--CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------EEE
Confidence             2666654321   10         11111111  123356777433356666554  4689999998742      222


Q ss_pred             eeecCCeEecccceEEcCCce
Q psy731          432 VAEDNATLIYPSDIRVDRTGV  452 (494)
Q Consensus       432 v~~d~~~l~~pd~~~id~~g~  452 (494)
                      +... .   ....+.+.++|.
T Consensus       350 l~~~-~---~~~~~~~spdg~  366 (415)
T 2hqs_A          350 LSST-F---LDETPSLAPNGT  366 (415)
T ss_dssp             CCCS-S---SCEEEEECTTSS
T ss_pred             ecCC-C---CcCCeEEcCCCC
Confidence            3222 1   455667777775

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=96.40  E-value=0.083  Score=54.13  Aligned_cols=128  Identities=9%  Similarity=-0.014  Sum_probs=78.2

Q ss_pred             eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCC-eEEEEeCCCCC
Q psy731           71 WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCD-RLWALDSGVVE  149 (494)
Q Consensus        71 ~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~-~LwvlD~G~~~  149 (494)
                      ...|+||+-+... .+--++..|+....         -.+.-+|-       ..   .. ++.++.++ +|||-+.+...
T Consensus        30 ~~~~~yV~~~~~~-~~~d~vsvID~~t~---------~v~~~i~v-------G~---~P-~i~~spDg~~lyVan~~~~r   88 (368)
T 1mda_H           30 ISRRSHITLPAYF-AGTTENWVSCAGCG---------VTLGHSLG-------AF---LS-LAVAGHSGSDFALASTSFAR   88 (368)
T ss_dssp             CTTEEEEEECTTT-CSSEEEEEEETTTT---------EEEEEEEE-------CT---TC-EEEECTTSSCEEEEEEEETT
T ss_pred             CCCeEEEECCccC-CccceEEEEECCCC---------eEEEEEeC-------CC---CC-ceEECCCCCEEEEEcccccc
Confidence            4689999998863 22227778875432         12332331       11   13 57777665 69999864221


Q ss_pred             CC-CCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-CCeEEE--EEccCCceeE
Q psy731          150 GK-MEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-HNHIVV--YNYRTNDSHI  225 (494)
Q Consensus       150 ~~-~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-~~~iIV--yd~~~~~~~r  225 (494)
                      .. -...-.|.+||+.|+++++++.+|...-.........++++     .++.++||++.. ...+.|  +|.++  ..+
T Consensus        89 ~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~S-----pDGk~lyVan~~~~~~v~V~~iD~~t--v~~  161 (368)
T 1mda_H           89 SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-----ASSACLLFFLFGSSAAAGLSVPGASD--DQL  161 (368)
T ss_dssp             TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-----TTSSCEEEEECSSSCEEEEEETTTEE--EEE
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEc-----CCCCEEEEEccCCCCeEEEEEEchhh--ceE
Confidence            00 00112799999999999999998720000001234456664     268899999986 567888  89988  455


Q ss_pred             E
Q psy731          226 I  226 (494)
Q Consensus       226 v  226 (494)
                      +
T Consensus       162 i  162 (368)
T 1mda_H          162 T  162 (368)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.23  E-value=1  Score=44.69  Aligned_cols=216  Identities=11%  Similarity=0.132  Sum_probs=112.0

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .|..||+.+++.++.+.-.       ...+..+...     .+..++ ++=
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~--------~i~iwd~~~~~~~~~~~~h-------~~~v~~~~~~-----p~~~~l-~s~  183 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDR--------LIRIWDIENRKIVMILQGH-------EQDIYSLDYF-----PSGDKL-VSG  183 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTS--------CEEEEETTTTEEEEEECCC-------SSCEEEEEEC-----TTSSEE-EEE
T ss_pred             eEEEEEECCCCCEEEEEcCCC--------eEEEEECCCCcEEEEEccC-------CCCEEEEEEc-----CCCCEE-EEe
Confidence            366777777887766522222        6888999999988765422       2233333332     133344 444


Q ss_pred             CCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      +..+.|.+||+.+++.-.. .++                                .....+.+..  .  +..++.. -.
T Consensus       184 s~d~~v~iwd~~~~~~~~~~~~~--------------------------------~~v~~~~~~~--~--~~~~l~~-~s  226 (393)
T 1erj_A          184 SGDRTVRIWDLRTGQCSLTLSIE--------------------------------DGVTTVAVSP--G--DGKYIAA-GS  226 (393)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECS--------------------------------SCEEEEEECS--T--TCCEEEE-EE
T ss_pred             cCCCcEEEEECCCCeeEEEEEcC--------------------------------CCcEEEEEEC--C--CCCEEEE-Ec
Confidence            5567899999998875433 110                                0122222221  0  1233333 23


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||+++++.-+.........        .|    -...+..++++|++    +.|+-....++ ++|.+.+...
T Consensus       227 ~d~~v~iwd~~~~~~~~~~~~~~~~~--------~~----h~~~v~~v~~~~~g----~~l~s~s~d~~v~~wd~~~~~~  290 (393)
T 1erj_A          227 LDRAVRVWDSETGFLVERLDSENESG--------TG----HKDSVYSVVFTRDG----QSVVSGSLDRSVKLWNLQNANN  290 (393)
T ss_dssp             TTSCEEEEETTTCCEEEEEC--------------CC----CSSCEEEEEECTTS----SEEEEEETTSEEEEEEC-----
T ss_pred             CCCcEEEEECCCCcEEEeecccccCC--------CC----CCCCEEEEEECCCC----CEEEEEeCCCEEEEEECCCCCC
Confidence            45678899998876543321110000        00    12347789998863    56666655554 6777654322


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .................|..   .....++.. .+|...++--....|..||..+|
T Consensus       291 ~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~-~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          291 KSDSKTPNSGTCEVTYIGHK---DFVLSVATT-QNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             ----------CEEEEEECCS---SCEEEEEEC-GGGCEEEEEETTSEEEEEETTTC
T ss_pred             cccccCCCCCcceEEEeccc---CcEEEEEEC-CCCCEEEEEeCCCeEEEEECCCC
Confidence            11110000111123334443   234456777 56766677777888999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=96.21  E-value=0.99  Score=43.83  Aligned_cols=61  Identities=10%  Similarity=0.044  Sum_probs=34.8

Q ss_pred             cCCCeEEEEeCCCCccccccceeeeeecCCeEe--------cccceEEcCCc-eEEEEecCchhhhcCCCCCCcccEEEE
Q psy731          408 LVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLI--------YPSDIRVDRTG-VLWVLSNKLPVFLYSKLKPEDINVRIF  478 (494)
Q Consensus       408 ~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~--------~pd~~~id~~g-~Lwvlsnrl~~~~~~~~~~~~~nfrI~  478 (494)
                      -....|..||.++|      ....+........        ....+.+.+|| .|++.+++-            ....||
T Consensus       317 ~~~~~i~~~d~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~------------g~~~l~  378 (388)
T 3pe7_A          317 ENDPFLYVFNMKNG------TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVH------------GKPALY  378 (388)
T ss_dssp             CCCCEEEEEETTTT------EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT------------SSCEEE
T ss_pred             CCCCEEEEEeccCC------ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCC------------CceeEE
Confidence            44668999999874      2233433322111        24556777888 577777541            123577


Q ss_pred             EEechhhh
Q psy731          479 KSTVRNAI  486 (494)
Q Consensus       479 r~~~~~~i  486 (494)
                      ++++++-.
T Consensus       379 ~~~l~~~~  386 (388)
T 3pe7_A          379 LATLPESV  386 (388)
T ss_dssp             EEECCGGG
T ss_pred             EEECChhc
Confidence            77776543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=96.10  E-value=0.65  Score=45.94  Aligned_cols=180  Identities=8%  Similarity=0.112  Sum_probs=96.9

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      .|..||+.+++.++++.-.       ......+.+.     ..+..+++|=+..+.|.+||+++++.-+. ..+      
T Consensus       150 ~i~iwd~~~~~~~~~~~~h-------~~~V~~~~~~-----~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~------  211 (344)
T 4gqb_B          150 CIKVWDLAQQVVLSSYRAH-------AAQVTCVAAS-----PHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS------  211 (344)
T ss_dssp             CEEEEETTTTEEEEEECCC-------SSCEEEEEEC-----SSCTTEEEEEETTSCEEEEETTSSSCEEECC--------
T ss_pred             eEEEEECCCCcEEEEEcCc-------CCceEEEEec-----CCCCCceeeeccccccccccccccceeeeeecc------
Confidence            5888999999998866422       2233334332     23445667767778899999998876443 100      


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                             ........+....     ++..+.++-..+..|.+||+++++.-+...         
T Consensus       212 -----------------------~~~~~~~~~~~~p-----~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~---------  254 (344)
T 4gqb_B          212 -----------------------APGYLPTSLAWHP-----QQSEVFVFGDENGTVSLVDTKSTSCVLSSA---------  254 (344)
T ss_dssp             -------------------------CCCEEEEEECS-----SCTTEEEEEETTSEEEEEESCC--CCEEEE---------
T ss_pred             -----------------------eeeccceeeeecC-----CCCcceEEeccCCcEEEEECCCCcEEEEEc---------
Confidence                                   0011112222221     122223333345668899998765322110         


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS  394 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~  394 (494)
                            |    -...|..|+.+|++   .+.|.-...-++ ++|.+.+.             +.++..|..   ....++
T Consensus       255 ------~----h~~~v~~v~fsp~g---~~~lasgs~D~~i~vwd~~~~-------------~~~~~~~H~---~~V~~v  305 (344)
T 4gqb_B          255 ------V----HSQCVTGLVFSPHS---VPFLASLSEDCSLAVLDSSLS-------------ELFRSQAHR---DFVRDA  305 (344)
T ss_dssp             ------C----CSSCEEEEEECSSS---SCCEEEEETTSCEEEECTTCC-------------EEEEECCCS---SCEEEE
T ss_pred             ------C----CCCCEEEEEEccCC---CeEEEEEeCCCeEEEEECCCC-------------cEEEEcCCC---CCEEEE
Confidence                  0    02347788998863   344544444332 55543322             123334443   234567


Q ss_pred             EeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          395 SLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       395 ~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ++.|....|+.+--....|..|+...
T Consensus       306 ~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          306 TWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             EEeCCCCeEEEEEcCCCeEEEEECCC
Confidence            77754456776766788999999876

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=96.09  E-value=0.7  Score=49.66  Aligned_cols=165  Identities=10%  Similarity=0.092  Sum_probs=84.4

Q ss_pred             EEeeEEEcCCCeEEEE-eCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCc-----cccc------------cCCccce
Q psy731          128 SVVKVQSDPCDRLWAL-DSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKT-----DYTE------------ESKFSNM  189 (494)
Q Consensus       128 sV~~i~iD~~~~Lwvl-D~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~-----~~~~------------~S~l~d~  189 (494)
                      ++..+...++|+..++ .. ..  .......|..||+.+++..+........     ++..            ...+.++
T Consensus        38 ~~~~~~~SpdG~~la~~~~-~d--~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRG-KD--SDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCEEEEECTTSSEEEEEEC-CS--SCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCceEecCCCEEEEEec-cC--CCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            4556667777754333 32 11  0011236888888888877666543200     0000            0113344


Q ss_pred             EEEeecCCCCCcEEEEeeCCCCeEEEEEccCC---ceeEEecCccccCCCCCccccCCccceeeeeccccccccccccee
Q psy731          190 VVDVTSANCDNAFLYIADSGHNHIVVYNYRTN---DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN  266 (494)
Q Consensus       190 vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~---~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~  266 (494)
                      .+.     .+..+++++..  +.|.+||+.++   ...++..+                               ......
T Consensus       115 ~~S-----pDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~-------------------------------~~~~~~  156 (741)
T 2ecf_A          115 QWS-----PDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHG-------------------------------EGFATD  156 (741)
T ss_dssp             EEC-----TTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCS-------------------------------SSCEEE
T ss_pred             EEC-----CCCCEEEEEeC--CcEEEEECCCCCcceEEEcccC-------------------------------Cccccc
Confidence            442     24445555443  78999999988   66555211                               011222


Q ss_pred             eEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeee-----ecceeeeeeccCCC
Q psy731          267 MVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQW-----QTGIHGMSLSPLTR  341 (494)
Q Consensus       267 i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~-----~~Gi~gIaLsp~~~  341 (494)
                      +.+.  +  .++..||..|   ..|.++|+.+++..++......  +     ..+|.. .|     ...+.+++.||+  
T Consensus       157 ~~~S--P--DG~~la~~~~---~~i~~~d~~~g~~~~~~~~~~~--~-----~~~g~~-~~v~~~~~~~~~~~~~SpD--  219 (741)
T 2ecf_A          157 AKLS--P--KGGFVSFIRG---RNLWVIDLASGRQMQLTADGST--T-----IGNGIA-EFVADEEMDRHTGYWWAPD--  219 (741)
T ss_dssp             EEEC--T--TSSEEEEEET---TEEEEEETTTTEEEECCCCCCS--S-----EEESCC-CHHHHHHSCCCCSEEECTT--
T ss_pred             ccCC--C--CCCEEEEEeC---CcEEEEecCCCCEEEeccCCcc--c-----eecccc-ceeeeeccccccceEECCC--
Confidence            3332  1  1245677765   4799999999987777543211  0     001100 00     012467999997  


Q ss_pred             CCceeEEEeeC
Q psy731          342 DNFRVMYFHPL  352 (494)
Q Consensus       342 ~g~r~LYf~pl  352 (494)
                        +++|+|...
T Consensus       220 --g~~l~~~~~  228 (741)
T 2ecf_A          220 --DSAIAYARI  228 (741)
T ss_dssp             --SSCEEEEEE
T ss_pred             --CCEEEEEEE
Confidence              368888644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.06  E-value=1.7  Score=47.58  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=50.2

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC-----CC
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG-----HN  211 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~-----~~  211 (494)
                      .++|++-... .        .|+++|.+|++++-++.....  .........++|+       ++.+|+..++     .+
T Consensus       117 ~~~v~v~~~d-g--------~l~alD~~tG~~~W~~~~~~~--~~~~~~~~~P~v~-------~~~v~vg~~~~~~~~~g  178 (668)
T 1kv9_A          117 GDKVYVGTLD-G--------RLIALDAKTGKAIWSQQTTDP--AKPYSITGAPRVV-------KGKVIIGNGGAEYGVRG  178 (668)
T ss_dssp             BTEEEEECTT-S--------EEEEEETTTCCEEEEEECSCT--TSSCBCCSCCEEE-------TTEEEECCBCTTTCCBC
T ss_pred             CCEEEEEcCC-C--------EEEEEECCCCCEeeeeccCCC--CCcceecCCCEEE-------CCEEEEeCCCCCcCCCC
Confidence            5678776422 1        799999999999988887531  1111222345553       4678987654     46


Q ss_pred             eEEEEEccCCce-eEEec
Q psy731          212 HIVVYNYRTNDS-HIIHH  228 (494)
Q Consensus       212 ~iIVyd~~~~~~-~rv~~  228 (494)
                      .|..||.++|+. |++..
T Consensus       179 ~v~a~D~~tG~~~W~~~~  196 (668)
T 1kv9_A          179 FVSAYDADTGKLAWRFYT  196 (668)
T ss_dssp             EEEEEETTTCCEEEEEES
T ss_pred             EEEEEECCCCcEEEEecc
Confidence            899999998875 88843

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.83  E-value=1.7  Score=47.65  Aligned_cols=121  Identities=11%  Similarity=0.043  Sum_probs=72.6

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccc----cCCccceEEEeecCCCCCcEEEEeeCCCCe
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTE----ESKFSNMVVDVTSANCDNAFLYIADSGHNH  212 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~----~S~l~d~vVD~~~~~c~~~~vYItDs~~~~  212 (494)
                      .++|++.....         .|+++|+.|++++-+++++......+    ...-..++++       ++.||+.. ..+.
T Consensus        77 ~g~vyv~~~~~---------~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~-------~~~v~v~~-~dg~  139 (677)
T 1kb0_A           77 DGIMYVSASWS---------VVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-------KGKVYVGA-WDGR  139 (677)
T ss_dssp             TTEEEEECGGG---------CEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-------TTEEEEEC-TTSE
T ss_pred             CCEEEEECCCC---------eEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEE-------CCEEEEEc-CCCE
Confidence            67788775421         69999999999999898765211100    0011244553       57899984 4578


Q ss_pred             EEEEEccCCce-eEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC----
Q psy731          213 IVVYNYRTNDS-HIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG----  287 (494)
Q Consensus       213 iIVyd~~~~~~-~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~----  287 (494)
                      |+++|.++|+. |++.-.   .++.. .+                     ......+++       +..+|+....    
T Consensus       140 l~alD~~tG~~~W~~~~~---~~~~~-~~---------------------~~~~~p~v~-------~~~v~v~~~~~~~~  187 (677)
T 1kb0_A          140 LIALDAATGKEVWHQNTF---EGQKG-SL---------------------TITGAPRVF-------KGKVIIGNGGAEYG  187 (677)
T ss_dssp             EEEEETTTCCEEEEEETT---TTCCS-SC---------------------BCCSCCEEE-------TTEEEECCBCTTTC
T ss_pred             EEEEECCCCCEEeeecCC---cCcCc-Cc---------------------ccccCcEEE-------CCEEEEEecccccC
Confidence            99999988875 887321   00000 00                     001112332       3467776543    


Q ss_pred             -CCeEEEEEcCCCc-EEEEec
Q psy731          288 -HNHIVVYNYRTND-SHIIHH  306 (494)
Q Consensus       288 -~~gliVydl~~~~-swrv~~  306 (494)
                       ...|..||.++++ .|++..
T Consensus       188 ~~g~v~a~D~~tG~~~W~~~~  208 (677)
T 1kb0_A          188 VRGYITAYDAETGERKWRWFS  208 (677)
T ss_dssp             CBCEEEEEETTTCCEEEEEES
T ss_pred             CCCEEEEEECCCCcEEEEecc
Confidence             4679999998766 788864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=95.66  E-value=3  Score=44.89  Aligned_cols=79  Identities=8%  Similarity=-0.007  Sum_probs=50.4

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-----CCC
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-----GHN  211 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-----~~~  211 (494)
                      .++|++-....         .|+++|++|++++-++.++..  ...-+....++|.- ....++..||+.-+     ..+
T Consensus       117 ~~~v~~~t~dg---------~l~AlD~~TG~~~W~~~~~~~--~~~~~~~~sP~v~~-~~~~G~~~v~vg~~~~e~~~~g  184 (582)
T 1flg_A          117 GDKVFFGTLDA---------SVVALNKNTGKVVWKKKFADH--GAGYTMTGAPTIVK-DGKTGKVLLIHGSSGDEFGVVG  184 (582)
T ss_dssp             TTEEEEEETTT---------EEEEEESSSCCEEEEEECSCG--GGTCBCCSCCEEEE-CTTTCCEEEEECCBCGGGCCBC
T ss_pred             CCEEEEEeCCC---------EEEEEECCCCCEEeeecCCCC--CcCcccccCCEEeC-CCcCCcEEEEEeccccccCCCC
Confidence            56788765322         799999999999988887651  11112334555532 11112338898654     357


Q ss_pred             eEEEEEccCCc-eeEEe
Q psy731          212 HIVVYNYRTND-SHIIH  227 (494)
Q Consensus       212 ~iIVyd~~~~~-~~rv~  227 (494)
                      .|..||.++|+ .|+..
T Consensus       185 ~v~alD~~tG~~~W~~~  201 (582)
T 1flg_A          185 RLFARDPDTGEEIWMRP  201 (582)
T ss_dssp             EEEEECTTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEeecC
Confidence            89999999887 57663

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=95.64  E-value=2.2  Score=48.84  Aligned_cols=212  Identities=12%  Similarity=0.095  Sum_probs=115.8

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .|.+||+.+++.++++.-..       .....+...    ...+..+.++=
T Consensus       659 ~v~~~~~s~~~~~l~s~~~d~--------~v~vwd~~~~~~~~~~~~~~-------~~v~~~~~~----~~~~~~~l~sg  719 (1249)
T 3sfz_A          659 EVLCCAFSSDDSYIATCSADK--------KVKIWDSATGKLVHTYDEHS-------EQVNCCHFT----NKSNHLLLATG  719 (1249)
T ss_dssp             CEEEEEECTTSSEEEEEETTS--------EEEEEETTTCCEEEEEECCS-------SCEEEEEEC----SSSSCCEEEEE
T ss_pred             CEEEEEEecCCCEEEEEeCCC--------eEEEEECCCCceEEEEcCCC-------CcEEEEEEe----cCCCceEEEEE
Confidence            456667777776555422222        79999999999998776433       223333331    22345566666


Q ss_pred             CCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      +..+.|.+||+.++..... ..|                               ......+.+..     ++.++... .
T Consensus       720 ~~d~~v~vwd~~~~~~~~~~~~h-------------------------------~~~v~~~~~sp-----~~~~l~s~-s  762 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQKECRNTMFGH-------------------------------TNSVNHCRFSP-----DDELLASC-S  762 (1249)
T ss_dssp             ETTSCEEEEETTSSSEEEEECCC-------------------------------SSCEEEEEECS-----STTEEEEE-E
T ss_pred             eCCCeEEEEECCCcchhheecCC-------------------------------CCCEEEEEEec-----CCCEEEEE-E
Confidence            6778899999999875443 110                               11123333332     22333333 2


Q ss_pred             CCCeEEEEEcCCCcEEEEec-CCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHH-NYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~-~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L  365 (494)
                      .+..|.+||+.+++..+... ......+       .+..-.....+..++++|++    +.+....-..-.+|.+.+...
T Consensus       763 ~dg~v~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~~~s~dg----~~l~~~~~~~v~~~d~~~~~~  831 (1249)
T 3sfz_A          763 ADGTLRLWDVRSANERKSINVKRFFLSS-------EDPPEDVEVIVKCCSWSADG----DKIIVAAKNKVLLFDIHTSGL  831 (1249)
T ss_dssp             SSSEEEEEEGGGTEEEEEEECCCCC---------------CCCCCBCCCCBCTTS----SEEEEEETTEEEEEETTTCCE
T ss_pred             CCCeEEEEeCCCCcccceeccccccccc-------CCccccccceEEEEEECCCC----CEEEEEcCCcEEEEEecCCCc
Confidence            45678999999887554432 1111000       00011112346778898863    566665533224443322111


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .          .. ...|.   ......+++. .+|.+.++-.....|..||..++
T Consensus       832 ~----------~~-~~~~~---~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~~  872 (1249)
T 3sfz_A          832 L----------AE-IHTGH---HSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSR  872 (1249)
T ss_dssp             E----------EE-EECSS---SSCCCEEEEC-SSTTEEEEECSSSCEEEEETTTT
T ss_pred             e----------eE-EcCCC---CCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCCC
Confidence            0          00 01122   2446678888 57777777778889999999874

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.30  E-value=0.77  Score=45.45  Aligned_cols=137  Identities=13%  Similarity=0.258  Sum_probs=85.9

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ....+|.||.+.+.|.+.++..+...++...                                ..  .+.+..     .+
T Consensus       155 ~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~--------------------------------~~--~~~~~P-----~g  195 (302)
T 3s25_A          155 SDRYFYYNNPKNGQLYRYDTASQSEALFYDC--------------------------------NC--YKPVVL-----DD  195 (302)
T ss_dssp             ETTEEEEECTTTCCEEEEETTTTEEEEEECS--------------------------------CE--EEEEEE-----ET
T ss_pred             ECCEEEEEeCCCceEEEEECCCCCEEEEeCC--------------------------------Cc--cceeee-----cC
Confidence            4678999999889999999998888777210                                00  112221     25


Q ss_pred             cEEEEecCC-CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-Ccc
Q psy731          279 AFLYIADSG-HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-STT  356 (494)
Q Consensus       279 ~~~YI~D~~-~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-s~~  356 (494)
                      .++|.+|.. ...|.+-++.+....++.....                        ..++|.    +++|||..-+ ...
T Consensus       196 ~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~------------------------~~~~~~----g~~Iy~~~~~~~~~  247 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNINNPNPVVLTEANI------------------------EHYNVY----GSLIFYQRGGDNPA  247 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECSSSCCCEECSCSCE------------------------EEEEEE----TTEEEEEECSSSCE
T ss_pred             CEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc------------------------ceEEEC----CCEEEEEECCCCcE
Confidence            678888754 3678888888777655543211                        124454    3689997443 346


Q ss_pred             eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      +++++.    |.+.        -+.+-+ +   +  +.++....+.|||++....+|.+-++++
T Consensus       248 i~~~~~----DG~~--------r~~l~~-~---~--~~~i~i~~d~Iy~td~~~~~i~~~~~dG  293 (302)
T 3s25_A          248 LCVVKN----DGTG--------FKELAK-G---E--FCNINVTSQYVYFTDFVSNKEYCTSTQN  293 (302)
T ss_dssp             EEEEET----TSCC--------CEEEEE-S---C--EEEEEECSSEEEEEETTTCCEEEEESSS
T ss_pred             EEEEEC----CCCc--------cEEeeC-C---c--cceEEEeCCEEEEEECCCCeEEEEECCC
Confidence            777754    2220        011111 1   1  2244445789999999999999999887

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=95.18  E-value=3  Score=41.96  Aligned_cols=155  Identities=10%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             CCcEEEEeeCCCCeEEEEEcc--CCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYR--TNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN  275 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~--~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~  275 (494)
                      ++.+++++=+..+.|.+||+.  ++...+. ..+.                             .......+.+..    
T Consensus       113 d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----------------------------~~~~v~~~~~sp----  159 (450)
T 2vdu_B          113 DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC-----------------------------FSKRPNAISIAE----  159 (450)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE-----------------------------CSSCEEEEEECT----
T ss_pred             CCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc-----------------------------CCCCceEEEEcC----
Confidence            567776666667889999998  6655444 1100                             011233344432    


Q ss_pred             CCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          276 CDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       276 c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                       ++.+++.++. ...+.+|++.+++..+.        +.. .+  .|    ....+..|+++|+. ++++.|+.....++
T Consensus       160 -~~~~l~~~~~-~g~v~~~~~~~~~~~~~--------~~~-~~--~~----h~~~v~~~~~sp~~-~~~~~l~s~~~d~~  221 (450)
T 2vdu_B          160 -DDTTVIIADK-FGDVYSIDINSIPEEKF--------TQE-PI--LG----HVSMLTDVHLIKDS-DGHQFIITSDRDEH  221 (450)
T ss_dssp             -TSSEEEEEET-TSEEEEEETTSCCCSSC--------CCC-CS--EE----CSSCEEEEEEEECT-TSCEEEEEEETTSC
T ss_pred             -CCCEEEEEeC-CCcEEEEecCCcccccc--------cce-ee--ec----ccCceEEEEEcCCC-CCCcEEEEEcCCCc
Confidence             3456666653 45577888776542210        000 00  00    12457789999861 12367777766654


Q ss_pred             -ceEeeechhhcCCCcCccccccceE-EecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          356 -TEFAVTTKVLQNRSLDFSRSNFDFK-VMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       356 -~ly~V~T~~L~~~~~~~~~~~~~v~-~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                       ++|.+.+..+.            .. ..|..   .....+++.  +|.++++--....|..||..+|
T Consensus       222 i~vwd~~~~~~~------------~~~~~~h~---~~v~~~~~s--d~~~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          222 IKISHYPQCFIV------------DKWLFGHK---HFVSSICCG--KDYLLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             EEEEEESCTTCE------------EEECCCCS---SCEEEEEEC--STTEEEEEESSSEEEEEETTTC
T ss_pred             EEEEECCCCcee------------eeeecCCC---CceEEEEEC--CCCEEEEEeCCCeEEEEECCCC
Confidence             66766542210            01 11322   234456665  5655666667889999999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.17  E-value=1.8  Score=39.28  Aligned_cols=56  Identities=13%  Similarity=0.234  Sum_probs=35.0

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccC-CceeEE
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRT-NDSHII  226 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~-~~~~rv  226 (494)
                      ..|..||+.++++.+....+.        .+..+++.     .+..+++.+.  .+.|.+||+.+ +...++
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~--------~v~~~~~s-----pdg~~l~~~~--~~~i~~~d~~~~~~~~~~   78 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPE--------LFEAPNWS-----PDGKYLLLNS--EGLLYRLSLAGDPSPEKV   78 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESS--------CCEEEEEC-----TTSSEEEEEE--TTEEEEEESSSCCSCEEC
T ss_pred             eeEEEEeCCCCceeeeccCCc--------ceEeeEEC-----CCCCEEEEEc--CCeEEEEeCCCCCCceEe
Confidence            477888888887765444322        33444442     1344555543  45899999999 877666

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.13  E-value=2.8  Score=41.28  Aligned_cols=204  Identities=9%  Similarity=0.045  Sum_probs=102.8

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+....+++|.+-   ..+ +     .|..||+.+++.+....+..   ......+..+.+.     .+..++. |=+
T Consensus        85 v~~~~~s~d~~l~~~---s~d-g-----~v~lWd~~~~~~~~~~~~~~---~~H~~~V~~v~~s-----pdg~~l~-sgs  146 (344)
T 4gqb_B           85 VADLTWVGERGILVA---SDS-G-----AVELWELDENETLIVSKFCK---YEHDDIVSTVSVL-----SSGTQAV-SGS  146 (344)
T ss_dssp             EEEEEEETTTEEEEE---ETT-S-----EEEEEEECTTSSCEEEEEEE---ECCSSCEEEEEEC-----TTSSEEE-EEE
T ss_pred             EEEEEEeCCCeEEEE---ECC-C-----EEEEEeccCCCceeEeeccc---cCCCCCEEEEEEC-----CCCCEEE-EEe
Confidence            555666566665543   221 1     57888999887554443321   0122334444442     1334443 334


Q ss_pred             CCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          209 GHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      ..+.|.+||+.+++.-+. ..|.                               .....+.+..     ++..++++=..
T Consensus       147 ~d~~i~iwd~~~~~~~~~~~~h~-------------------------------~~V~~~~~~~-----~~~~~l~s~s~  190 (344)
T 4gqb_B          147 KDICIKVWDLAQQVVLSSYRAHA-------------------------------AQVTCVAASP-----HKDSVFLSCSE  190 (344)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCS-------------------------------SCEEEEEECS-----SCTTEEEEEET
T ss_pred             CCCeEEEEECCCCcEEEEEcCcC-------------------------------CceEEEEecC-----CCCCceeeecc
Confidence            556799999999876554 1110                               1122233321     12223444445


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~  366 (494)
                      +..|.+||+++++.-+.......                 ...+..++.+|++   .+.|......++ ++|.+.+..+ 
T Consensus       191 D~~v~iwd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~p~~---~~~l~sg~~dg~v~~wd~~~~~~-  249 (344)
T 4gqb_B          191 DNRILLWDTRCPKPASQIGCSAP-----------------GYLPTSLAWHPQQ---SEVFVFGDENGTVSLVDTKSTSC-  249 (344)
T ss_dssp             TSCEEEEETTSSSCEEECC---------------------CCCEEEEEECSSC---TTEEEEEETTSEEEEEESCC--C-
T ss_pred             ccccccccccccceeeeeeccee-----------------eccceeeeecCCC---CcceEEeccCCcEEEEECCCCcE-
Confidence            67789999988764332211000                 0114557777752   234444444443 5555433211 


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                                 ..+..|..   .....+++.|....+..+--....|..||..++
T Consensus       250 -----------~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          250 -----------VLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             -----------CEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             -----------EEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence                       11223333   224567777433355566667788999999874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.04  E-value=1  Score=48.07  Aligned_cols=24  Identities=4%  Similarity=0.177  Sum_probs=18.7

Q ss_pred             CcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731          200 NAFLYIADSGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       200 ~~~vYItDs~~~~iIVyd~~~~~~~rv  226 (494)
                      +..+|.+|   +.|.+||+.+++..++
T Consensus        93 ~~~~~~~~---~~i~~~d~~~~~~~~l  116 (706)
T 2z3z_A           93 GLVVLFTQ---GGLVGFDMLARKVTYL  116 (706)
T ss_dssp             TEEEEEET---TEEEEEETTTTEEEEE
T ss_pred             CeEEEEEC---CEEEEEECCCCceEEc
Confidence            55556555   7899999999988777

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.98  E-value=2.8  Score=40.50  Aligned_cols=176  Identities=11%  Similarity=0.121  Sum_probs=99.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      .|..||+.+++.++++....       .....+...     .+..+ .++=+..+.|.+||+.+++.-.. ..       
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~-------~~~~~~~~s-----pdg~~-l~~g~~dg~v~i~~~~~~~~~~~~~~-------  162 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGP-------VDAWTLAFS-----PDSQY-LATGTHVGKVNIFGVESGKKEYSLDT-------  162 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCT-------TCCCCEEEC-----TTSSE-EEEECTTSEEEEEETTTCSEEEEEEC-------
T ss_pred             cEEEEECCCCCEEEEEeCCC-------ccEEEEEEC-----CCCCE-EEEEcCCCcEEEEEcCCCceeEEecC-------
Confidence            78899999999988876543       122233332     12333 33445567899999988765332 11       


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                              .......+.+..     +..++.... .+..|.+||+++++.-+.....       
T Consensus       163 ------------------------~~~~v~~~~~sp-----dg~~lasg~-~dg~i~iwd~~~~~~~~~~~~h-------  205 (321)
T 3ow8_A          163 ------------------------RGKFILSIAYSP-----DGKYLASGA-IDGIINIFDIATGKLLHTLEGH-------  205 (321)
T ss_dssp             ------------------------SSSCEEEEEECT-----TSSEEEEEE-TTSCEEEEETTTTEEEEEECCC-------
T ss_pred             ------------------------CCceEEEEEECC-----CCCEEEEEc-CCCeEEEEECCCCcEEEEEccc-------
Confidence                                    111123333331     233433332 3456889999887643332110       


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS  394 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~  394 (494)
                                  ...+..++.+|+    ++.|......++ ++|.+.+..+            .-+..|..   .....+
T Consensus       206 ------------~~~v~~l~~spd----~~~l~s~s~dg~i~iwd~~~~~~------------~~~~~~h~---~~v~~~  254 (321)
T 3ow8_A          206 ------------AMPIRSLTFSPD----SQLLVTASDDGYIKIYDVQHANL------------AGTLSGHA---SWVLNV  254 (321)
T ss_dssp             ------------SSCCCEEEECTT----SCEEEEECTTSCEEEEETTTCCE------------EEEECCCS---SCEEEE
T ss_pred             ------------CCceeEEEEcCC----CCEEEEEcCCCeEEEEECCCcce------------eEEEcCCC---CceEEE
Confidence                        123667899886    256666555443 6665543211            01122322   334567


Q ss_pred             EeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          395 SLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       395 ~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ++. .+|..+++--....|..||..++
T Consensus       255 ~~s-p~~~~l~s~s~D~~v~iwd~~~~  280 (321)
T 3ow8_A          255 AFC-PDDTHFVSSSSDKSVKVWDVGTR  280 (321)
T ss_dssp             EEC-TTSSEEEEEETTSCEEEEETTTT
T ss_pred             EEC-CCCCEEEEEeCCCcEEEEeCCCC
Confidence            888 57777777778889999999874

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=94.94  E-value=1.6  Score=47.77  Aligned_cols=210  Identities=10%  Similarity=0.104  Sum_probs=118.4

Q ss_pred             ecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeec
Q psy731          194 TSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTS  273 (494)
Q Consensus       194 ~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~  273 (494)
                      +.+.-+..++||+|.....|-|+|+++.+--++-.                             ++.+.....+++...+
T Consensus        95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~-----------------------------ip~g~~phg~~~~~~p  145 (595)
T 1fwx_A           95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILE-----------------------------IPNAKGIHGLRPQKWP  145 (595)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEE-----------------------------CSSCCSEEEEEECCSS
T ss_pred             CCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEe-----------------------------CCCCCCCcceeeeecC
Confidence            33444678999999999999999999998766511                             1222234455553211


Q ss_pred             CCCCCcEEEEec-----------------CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeee
Q psy731          274 ANCDDAFLYIAD-----------------SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSL  336 (494)
Q Consensus       274 ~~c~~~~~YI~D-----------------~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaL  336 (494)
                         +..|+|++.                 .....+-|.|.++.+.             ..++.|+|.       -+++++
T Consensus       146 ---~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v-------------~~qI~Vgg~-------pd~~~~  202 (595)
T 1fwx_A          146 ---RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV-------------AWQVLVSGN-------LDNCDA  202 (595)
T ss_dssp             ---BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE-------------EEEEEESSC-------CCCEEE
T ss_pred             ---CCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeE-------------EEEEEeCCC-------ccceEE
Confidence               356777773                 1123455666664321             112223331       255999


Q ss_pred             ccCCCCCceeEEEeeCCCcc----------------eEeeec--hhhcCCCc------C--cccc--ccc-eEEecccCC
Q psy731          337 SPLTRDNFRVMYFHPLASTT----------------EFAVTT--KVLQNRSL------D--FSRS--NFD-FKVMGSRGT  387 (494)
Q Consensus       337 sp~~~~g~r~LYf~plss~~----------------ly~V~T--~~L~~~~~------~--~~~~--~~~-v~~~G~~G~  387 (494)
                      ||+    ++++|...-+|..                .+.+++  +.+.+...      +  +.+.  ... +..+- -| 
T Consensus       203 spd----Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg-  276 (595)
T 1fwx_A          203 DYE----GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IA-  276 (595)
T ss_dssp             CSS----SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EE-
T ss_pred             CCC----CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cC-
Confidence            987    4899998877722                111111  11212111      0  0000  011 11111 11 


Q ss_pred             CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc-----cccccceeeeeecCCeEecccceEEcCCceEEEEe---cC
Q psy731          388 GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGE-----EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS---NK  459 (494)
Q Consensus       388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~-----~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls---nr  459 (494)
                       .+.-|+.++|..-.+|.+....+.|..+|..+.+     .+.+ +..++++=+.. .=|-++.++++|++|++.   |+
T Consensus       277 -~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~-~~~v~~~v~vG-~gP~h~aF~~dG~aY~t~~ldsq  353 (595)
T 1fwx_A          277 -NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP-RSAVVAEPELG-LGPLHTAFDGRGNAYTSLFLDSQ  353 (595)
T ss_dssp             -SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG-GGGEEECCBCC-SCEEEEEECTTSEEEEEETTTTE
T ss_pred             -CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc-ccceEEEcCCC-CCcceEEECCCCeEEEEEecCCc
Confidence             2467899995444799999999999999998610     1111 11233332222 348889999999999984   66


Q ss_pred             chhhh
Q psy731          460 LPVFL  464 (494)
Q Consensus       460 l~~~~  464 (494)
                      +-+|.
T Consensus       354 V~kwd  358 (595)
T 1fwx_A          354 VVKWN  358 (595)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.89  E-value=3  Score=40.44  Aligned_cols=207  Identities=10%  Similarity=0.114  Sum_probs=114.5

Q ss_pred             EEeeEEEcCCC-eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          128 SVVKVQSDPCD-RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       128 sV~~i~iD~~~-~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      .|..+...+++ ++.+.=....        .|..||+.+++....+.+..     ....+..+...-    .+..+++.+
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~~~----~~~~~l~s~  137 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGG--------DIILWDYDVQNKTSFIQGMG-----PGDAITGMKFNQ----FNTNQLFVS  137 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTS--------CEEEEETTSTTCEEEECCCS-----TTCBEEEEEEET----TEEEEEEEE
T ss_pred             CEEEEEECCCCCCEEEEEcCCC--------eEEEEeCCCcccceeeecCC-----cCCceeEEEeCC----CCCCEEEEE
Confidence            45566666665 4444422222        58889999988877665432     234444554421    012344433


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                       +..+.|.+||+.++....+..+.-                            .......+.+..     +..+++... 
T Consensus       138 -~~d~~i~iwd~~~~~~~~~~~~~~----------------------------~~~~v~~~~~~~-----~~~~l~~~~-  182 (383)
T 3ei3_B          138 -SIRGATTLRDFSGSVIQVFAKTDS----------------------------WDYWYCCVDVSV-----SRQMLATGD-  182 (383)
T ss_dssp             -ETTTEEEEEETTSCEEEEEECCCC----------------------------SSCCEEEEEEET-----TTTEEEEEE-
T ss_pred             -eCCCEEEEEECCCCceEEEeccCC----------------------------CCCCeEEEEECC-----CCCEEEEEC-
Confidence             456789999999766655522111                            011233344432     234444443 


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||+.......+..+                    ...+..|+.+|++   ...|+-....+. ++|.+.+...
T Consensus       183 ~d~~i~i~d~~~~~~~~~~~h--------------------~~~v~~~~~~~~~---~~~l~s~~~d~~i~iwd~~~~~~  239 (383)
T 3ei3_B          183 STGRLLLLGLDGHEIFKEKLH--------------------KAKVTHAEFNPRC---DWLMATSSVDATVKLWDLRNIKD  239 (383)
T ss_dssp             TTSEEEEEETTSCEEEEEECS--------------------SSCEEEEEECSSC---TTEEEEEETTSEEEEEEGGGCCS
T ss_pred             CCCCEEEEECCCCEEEEeccC--------------------CCcEEEEEECCCC---CCEEEEEeCCCEEEEEeCCCCCc
Confidence            456788999965544444311                    1247779998863   124555554443 5555543111


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                               ....+..++..   .....++++|.+|.++++--..+.|..||..++
T Consensus       240 ---------~~~~~~~~~~~---~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          240 ---------KNSYIAEMPHE---KPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             ---------TTCEEEEEECS---SCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             ---------ccceEEEecCC---CceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence                     01123333433   345678888438877777778899999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=94.86  E-value=0.22  Score=48.39  Aligned_cols=111  Identities=10%  Similarity=-0.038  Sum_probs=59.0

Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~  366 (494)
                      +..|.+||+.+++.|.+......+               ....+..|+++|+    ++.|......+. ++|.+.+..+.
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~~  181 (377)
T 3dwl_C          121 ARVISVCYFEQENDWWVSKHLKRP---------------LRSTILSLDWHPN----NVLLAAGCADRKAYVLSAYVRDVD  181 (377)
T ss_dssp             SSCEEECCC-----CCCCEEECSS---------------CCSCEEEEEECTT----SSEEEEEESSSCEEEEEECCSSCC
T ss_pred             CCeEEEEEECCcccceeeeEeecc---------------cCCCeEEEEEcCC----CCEEEEEeCCCEEEEEEEEecccC
Confidence            456889999887754332221110               1234778999986    357777666554 78888655443


Q ss_pred             CCCcCc---c--ccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          367 NRSLDF---S--RSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       367 ~~~~~~---~--~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ......   .  .....+..++..   .....++++ .+|.++++--....|..||..++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s-p~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          182 AKPEASVWGSRLPFNTVCAEYPSG---GWVHAVGFS-PSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             -CCCSCSSCSCCCEEEEEECCCCS---SSEEEEEEC-TTSSCEEEEETTTEEC-CEECST
T ss_pred             CCccccccccccchhhhhhcccCC---ceEEEEEEC-CCCCEEEEEeCCCcEEEEECCCC
Confidence            322110   0  001112222322   335677888 57766666667789999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.77  E-value=2.8  Score=39.53  Aligned_cols=75  Identities=8%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .|..||+.+++.++.+..+.        .+..+.+.     .+..++..+.
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg--------~i~iwd~~~~~~~~~~~~~~--------~v~~~~~~-----~~~~~l~~~~  134 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADY--------SIKLWDVSNGQCVATWKSPV--------PVKRVEFS-----PCGNYFLAIL  134 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTT--------EEEEEETTTCCEEEEEECSS--------CEEEEEEC-----TTSSEEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCcEEEEeecCC--------CeEEEEEc-----cCCCEEEEec
Confidence            355666777666555422222        79999999999998887444        23334432     2344444443


Q ss_pred             CC----CCeEEEEEccCCce
Q psy731          208 SG----HNHIVVYNYRTNDS  223 (494)
Q Consensus       208 s~----~~~iIVyd~~~~~~  223 (494)
                      ..    .+.|.+||+.++..
T Consensus       135 ~~~~~~~g~i~~~d~~~~~~  154 (369)
T 3zwl_B          135 DNVMKNPGSINIYEIERDSA  154 (369)
T ss_dssp             CCBTTBCCEEEEEEEEECTT
T ss_pred             CCccCCCCEEEEEEecCCcc
Confidence            32    36899999887754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=94.77  E-value=0.65  Score=46.83  Aligned_cols=156  Identities=11%  Similarity=0.197  Sum_probs=86.9

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCc----eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTND----SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSA  274 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~----~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~  274 (494)
                      .+..++++.+..+.|.+||+.++.    .+.+.                               ......+.+.+..   
T Consensus       242 ~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-------------------------------~~~~~v~~i~~~p---  287 (430)
T 2xyi_A          242 LHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-------------------------------AHTAEVNCLSFNP---  287 (430)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE-------------------------------CCSSCEEEEEECS---
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCCCCcceeEee-------------------------------cCCCCeEEEEeCC---
Confidence            356788888889999999999874    22221                               1112244444432   


Q ss_pred             CCCCcEEEEecCCCCeEEEEEcCCCcE--EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-ee
Q psy731          275 NCDDAFLYIADSGHNHIVVYNYRTNDS--HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HP  351 (494)
Q Consensus       275 ~c~~~~~YI~D~~~~gliVydl~~~~s--wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~p  351 (494)
                        +..+++++-..+..|.+||+++...  ..+.                +    ....+..|+++|++    +.++. ..
T Consensus       288 --~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~----------------~----h~~~v~~i~~sp~~----~~~l~s~~  341 (430)
T 2xyi_A          288 --YSEFILATGSADKTVALWDLRNLKLKLHSFE----------------S----HKDEIFQVQWSPHN----ETILASSG  341 (430)
T ss_dssp             --SCTTEEEEEETTSEEEEEETTCTTSCSEEEE----------------C----CSSCEEEEEECSSC----TTEEEEEE
T ss_pred             --CCCCEEEEEeCCCeEEEEeCCCCCCCeEEee----------------c----CCCCEEEEEECCCC----CCEEEEEe
Confidence              2344555545567799999986331  1111                0    12357889999873    45554 44


Q ss_pred             CCCc-ceEeeechhhcCCCcCc--cc--cccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeCCC
Q psy731          352 LAST-TEFAVTTKVLQNRSLDF--SR--SNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       352 lss~-~ly~V~T~~L~~~~~~~--~~--~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~~~  420 (494)
                      ..+. ++|.+.+.  .......  .+  ....+...|..   .....++.. .+|. ++++--..+.|..|+..+
T Consensus       342 ~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~-p~~~~~l~s~s~dg~i~iw~~~~  410 (430)
T 2xyi_A          342 TDRRLHVWDLSKI--GEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWN-PNEPWIICSVSEDNIMQVWQMAE  410 (430)
T ss_dssp             TTSCCEEEEGGGT--TCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEEC-SSSTTEEEEEETTSEEEEEEECH
T ss_pred             CCCcEEEEeCCCC--ccccCccccccCCcceEEEcCCCC---CCceEEEEC-CCCCCEEEEEECCCCEEEeEccc
Confidence            4433 66766541  1111000  00  01112222222   335667888 5665 777777889999999876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.76  E-value=1  Score=43.97  Aligned_cols=81  Identities=11%  Similarity=0.245  Sum_probs=45.7

Q ss_pred             EEeeEEEcCC-CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          128 SVVKVQSDPC-DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       128 sV~~i~iD~~-~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      .|..+...++ +.+.+.=....        .|..||+++++.++.+..+.. .......+..+.+.-    .+..++..+
T Consensus       167 ~v~~~~~~~~~~~~l~~~~~dg--------~v~iwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~----~~~~~l~~~  233 (416)
T 2pm9_A          167 EVISLAWNQSLAHVFASAGSSN--------FASIWDLKAKKEVIHLSYTSP-NSGIKQQLSVVEWHP----KNSTRVATA  233 (416)
T ss_dssp             CCCEEEECSSCTTEEEEESSSS--------CEEEEETTTTEEEEEECCCCC-SSCCCCCEEEEEECS----SCTTEEEEE
T ss_pred             CeeEEEeCCCCCcEEEEEcCCC--------CEEEEECCCCCcceEEecccc-ccccCCceEEEEECC----CCCCEEEEE
Confidence            4555666665 45544432222        689999999999988876531 000134455555531    122334333


Q ss_pred             eCCCC---eEEEEEccCCc
Q psy731          207 DSGHN---HIVVYNYRTND  222 (494)
Q Consensus       207 Ds~~~---~iIVyd~~~~~  222 (494)
                       +..+   .|.+||+.++.
T Consensus       234 -~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          234 -TGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             -ECCSSSCCCCEEETTSTT
T ss_pred             -ECCCCCceEEEEeCCCCC
Confidence             3333   89999998863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.71  E-value=5.6  Score=42.74  Aligned_cols=200  Identities=10%  Similarity=0.126  Sum_probs=109.4

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+...+++++.+.=....        .|..||+.+++.++++....       .....+...-     ++.++..+..
T Consensus        16 v~~i~~sp~~~~la~~~~~g--------~v~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~-----~~~~l~~~~~   75 (814)
T 3mkq_A           16 VKGIDFHPTEPWVLTTLYSG--------RVEIWNYETQVEVRSIQVTE-------TPVRAGKFIA-----RKNWIIVGSD   75 (814)
T ss_dssp             EEEEEECSSSSEEEEEETTS--------EEEEEETTTTEEEEEEECCS-------SCEEEEEEEG-----GGTEEEEEET
T ss_pred             eEEEEECCCCCEEEEEeCCC--------EEEEEECCCCceEEEEecCC-------CcEEEEEEeC-----CCCEEEEEeC
Confidence            55566667666555432222        78899999999988877433       2344444432     3455555544


Q ss_pred             CCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          209 GHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                       .+.|.|||+.+++.-+. ..|                               ......+.+..     +..++.... .
T Consensus        76 -dg~i~vw~~~~~~~~~~~~~~-------------------------------~~~v~~~~~s~-----~~~~l~~~~-~  117 (814)
T 3mkq_A           76 -DFRIRVFNYNTGEKVVDFEAH-------------------------------PDYIRSIAVHP-----TKPYVLSGS-D  117 (814)
T ss_dssp             -TSEEEEEETTTCCEEEEEECC-------------------------------SSCEEEEEECS-----SSSEEEEEE-T
T ss_pred             -CCeEEEEECCCCcEEEEEecC-------------------------------CCCEEEEEEeC-----CCCEEEEEc-C
Confidence             67899999998876443 211                               11233333331     234444443 3


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~  366 (494)
                      +..|.+||+.++.........                  ....+..++.+|.+   ++.|+.....+. .+|.+.+    
T Consensus       118 dg~i~vw~~~~~~~~~~~~~~------------------~~~~v~~~~~~p~~---~~~l~~~~~dg~v~vwd~~~----  172 (814)
T 3mkq_A          118 DLTVKLWNWENNWALEQTFEG------------------HEHFVMCVAFNPKD---PSTFASGCLDRTVKVWSLGQ----  172 (814)
T ss_dssp             TSEEEEEEGGGTSEEEEEEEC------------------CSSCEEEEEEETTE---EEEEEEEETTSEEEEEETTC----
T ss_pred             CCEEEEEECCCCceEEEEEcC------------------CCCcEEEEEEEcCC---CCEEEEEeCCCeEEEEECCC----
Confidence            567889999877332211000                  01226668888731   356666665553 4454422    


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeC-CCCeEEEeccCCCeEEEEeCCCC
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDE-ETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~-~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                       ..       ......+..  ......+++.+ .+|.++++--....|..||..++
T Consensus       173 -~~-------~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          173 -ST-------PNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             -SS-------CSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             -Cc-------ceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence             11       111222221  12345566663 26766677777889999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.63  E-value=3  Score=39.28  Aligned_cols=212  Identities=8%  Similarity=0.000  Sum_probs=111.6

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      -.|..+...+++++.+.=....        .|..||+.+++.++++.-.       ...+..+.+.     .+..+++.+
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg--------~i~vwd~~~~~~~~~~~~h-------~~~v~~~~~~-----~~~~~l~s~   92 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDS--------SASVWYSLNGERLGTLDGH-------TGTIWSIDVD-----CFTKYCVTG   92 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSS--------CEEEEETTTCCEEEEECCC-------SSCEEEEEEC-----TTSSEEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCC--------EEEEEeCCCchhhhhhhhc-------CCcEEEEEEc-----CCCCEEEEE
Confidence            3466667777776555422222        6889999999998876532       2334444442     134455544


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                       +..+.|.+||+.+++..+.-.                               .......+.+..     +..++.....
T Consensus        93 -~~dg~i~iwd~~~~~~~~~~~-------------------------------~~~~v~~~~~~~-----~~~~l~~~~~  135 (369)
T 3zwl_B           93 -SADYSIKLWDVSNGQCVATWK-------------------------------SPVPVKRVEFSP-----CGNYFLAILD  135 (369)
T ss_dssp             -ETTTEEEEEETTTCCEEEEEE-------------------------------CSSCEEEEEECT-----TSSEEEEEEC
T ss_pred             -eCCCeEEEEECCCCcEEEEee-------------------------------cCCCeEEEEEcc-----CCCEEEEecC
Confidence             346789999999887755511                               011123333331     2233333322


Q ss_pred             C----CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeee
Q psy731          287 G----HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVT  361 (494)
Q Consensus       287 ~----~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~  361 (494)
                      .    ...|.+||+.++..-..... ....+.   ..+.+.  .-...+..++++|+    ++.|+.....+. .+|.+.
T Consensus       136 ~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~~~---~~~~~~--~~~~~~~~~~~~~~----~~~l~~~~~dg~i~i~d~~  205 (369)
T 3zwl_B          136 NVMKNPGSINIYEIERDSATHELTK-VSEEPI---HKIITH--EGLDAATVAGWSTK----GKYIIAGHKDGKISKYDVS  205 (369)
T ss_dssp             CBTTBCCEEEEEEEEECTTTCCEEE-ECSSCS---EEEECC--TTCCCEEEEEECGG----GCEEEEEETTSEEEEEETT
T ss_pred             CccCCCCEEEEEEecCCccceeecc-ccccee---eeccCC--cCccceeEEEEcCC----CCEEEEEcCCCEEEEEECC
Confidence            1    25788888876542111000 000000   000000  00125778899886    357776655553 455443


Q ss_pred             chhhcCCCcCccccccceEE-ecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          362 TKVLQNRSLDFSRSNFDFKV-MGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~-~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +.     .       ..+.. .+..   .....++++ .+|.++++--....|..||..++
T Consensus       206 ~~-----~-------~~~~~~~~~~---~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          206 NN-----Y-------EYVDSIDLHE---KSISDMQFS-PDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             TT-----T-------EEEEEEECCS---SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred             CC-----c-------EeEEEEecCC---CceeEEEEC-CCCCEEEEecCCceEEEEECCCC
Confidence            21     0       01111 1222   335678888 57877777777889999999874

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=94.54  E-value=3.5  Score=39.55  Aligned_cols=78  Identities=13%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+....++++.+-= +.+       -.|..||+.+++.++++.-..       +.+..+.+.      .++...+|=
T Consensus        67 ~v~~~~~s~dg~~l~s~-s~D-------~~v~~wd~~~~~~~~~~~~h~-------~~v~~~~~~------~~~~~l~s~  125 (319)
T 3frx_A           67 IVQDCTLTADGAYALSA-SWD-------KTLRLWDVATGETYQRFVGHK-------SDVMSVDID------KKASMIISG  125 (319)
T ss_dssp             CEEEEEECTTSSEEEEE-ETT-------SEEEEEETTTTEEEEEEECCS-------SCEEEEEEC------TTSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEE-eCC-------CEEEEEECCCCCeeEEEccCC-------CcEEEEEEc------CCCCEEEEE
Confidence            34455566666554431 222       178889999999888765322       334444442      233344555


Q ss_pred             CCCCeEEEEEccCCceeEE
Q psy731          208 SGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv  226 (494)
                      +..+.|.+||++......+
T Consensus       126 s~D~~i~vwd~~~~~~~~~  144 (319)
T 3frx_A          126 SRDKTIKVWTIKGQCLATL  144 (319)
T ss_dssp             ETTSCEEEEETTSCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEE
Confidence            5667899999987666555

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.47  E-value=1.5  Score=43.13  Aligned_cols=205  Identities=7%  Similarity=0.034  Sum_probs=95.6

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+...+++++.+--  ..  +     .|..||+.+++......+..   ....+.+..+.+.     .+..++. +=+
T Consensus        97 V~~~~~s~d~~~l~~s--~d--g-----~v~lWd~~~~~~~~~~~~~~---~~h~~~V~~v~~s-----pdg~~l~-sgs  158 (357)
T 4g56_B           97 VTDVAWVSEKGILVAS--DS--G-----AVELWEILEKESLLVNKFAK---YEHDDIVKTLSVF-----SDGTQAV-SGG  158 (357)
T ss_dssp             EEEEEEETTTEEEEEE--TT--S-----CEEEC--------CCCCEEE---CCCSSCEEEEEEC-----SSSSEEE-EEE
T ss_pred             EEEEEEcCCCCEEEEE--CC--C-----EEEEeeccccceeEEEeecc---CCCCCCEEEEEEC-----CCCCEEE-EEe
Confidence            5666666777776542  22  1     47778888876543222111   0122334444442     1333443 334


Q ss_pred             CCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          209 GHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      ..+.|.+||+.+++..+. ..|                               ......+++..     ++...+++-..
T Consensus       159 ~dg~v~iwd~~~~~~~~~~~~h-------------------------------~~~v~~v~~s~-----~~~~~~~s~~~  202 (357)
T 4g56_B          159 KDFSVKVWDLSQKAVLKSYNAH-------------------------------SSEVNCVAACP-----GKDTIFLSCGE  202 (357)
T ss_dssp             TTSCEEEEETTTTEEEEEECCC-------------------------------SSCEEEEEECT-----TCSSCEEEEET
T ss_pred             CCCeEEEEECCCCcEEEEEcCC-------------------------------CCCEEEEEEcc-----CCCceeeeecc
Confidence            456799999998876544 110                               01122333321     11122333334


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~  366 (494)
                      +..|.+||+++++.-+......                 ....+..++.+|++   ...|.-....+. ++|.+.+..+ 
T Consensus       203 dg~v~~wd~~~~~~~~~~~~~~-----------------~~~~v~~v~~sp~~---~~~la~g~~d~~i~~wd~~~~~~-  261 (357)
T 4g56_B          203 DGRILLWDTRKPKPATRIDFCA-----------------SDTIPTSVTWHPEK---DDTFACGDETGNVSLVNIKNPDS-  261 (357)
T ss_dssp             TSCEEECCTTSSSCBCBCCCTT-----------------CCSCEEEEEECTTS---TTEEEEEESSSCEEEEESSCGGG-
T ss_pred             CCceEEEECCCCceeeeeeecc-----------------ccccccchhhhhcc---cceEEEeecccceeEEECCCCcE-
Confidence            5678899988765221110000                 01235678888863   334444444332 5565543211 


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGE  422 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~  422 (494)
                                 .....|..   .....+++.|..+.+..+--....|..||.++++
T Consensus       262 -----------~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~  303 (357)
T 4g56_B          262 -----------AQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSE  303 (357)
T ss_dssp             -----------CEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred             -----------eEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence                       11122322   2245677774444555555567789999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=94.42  E-value=3.4  Score=38.97  Aligned_cols=222  Identities=9%  Similarity=0.065  Sum_probs=106.3

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE--ecCccccC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII--HHNYLHFD  234 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv--~~~~~~~d  234 (494)
                      .|..||+++++.++.+.--    ......+..+....     +..+++.+. ..+.|.+||+.+++..+.  .+..+.++
T Consensus       139 ~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~-----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~  208 (366)
T 3k26_A          139 ALRLWNIQTDTLVAIFGGV----EGHRDEVLSADYDL-----LGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPN  208 (366)
T ss_dssp             CEEEEETTTTEEEEEECST----TSCSSCEEEEEECT-----TSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred             eEEEEEeecCeEEEEeccc----ccccCceeEEEECC-----CCCEEEEec-CCCCEEEEECCCCccccccceeEEecCC
Confidence            5888999999888766310    11334455555531     334454443 357899999998765443  22223333


Q ss_pred             CCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCC
Q psy731          235 PLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  314 (494)
Q Consensus       235 p~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~  314 (494)
                      .....+.........|...    .........+..+       +.++... ..+..|.+||+.+.+.-   ...+.  +.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~-------~~~l~~~-~~d~~i~~wd~~~~~~~---~~~~~--~~  271 (366)
T 3k26_A          209 KTNRPFISQKIHFPDFSTR----DIHRNYVDCVRWL-------GDLILSK-SCENAIVCWKPGKMEDD---IDKIK--PS  271 (366)
T ss_dssp             GCSSCCCCEEECCCSEEEC----SSCSSCCCEEEEE-------TTEEEEE-CSSSEEEEEEESSTTCC---GGGCC--TT
T ss_pred             CCcccccceeeccCccccc----cCCcceEEEEEEc-------CCEEEEE-ecCCEEEEEeCCCcccc---ccccc--cC
Confidence            2222211111110011110    0012223444443       1233333 34677889998776420   00011  00


Q ss_pred             CcceEEcCEEee-eecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccce-EEecccCCCCCC
Q psy731          315 FGDFTIGGVNFQ-WQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDF-KVMGSRGTGSQS  391 (494)
Q Consensus       315 ~~~~~v~G~~f~-~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v-~~~G~~G~~~qs  391 (494)
                      ......- ..+. ....+..|+++|+. + ++.|+.....+. ++|.+.+..+..         ... ...+.. .....
T Consensus       272 ~~~~~~~-~~~~~~~~~v~~~~~s~~~-~-~~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~~~~~~-~~~~v  338 (366)
T 3k26_A          272 ESNVTIL-GRFDYSQCDIWYMRFSMDF-W-QKMLALGNQVGKLYVWDLEVEDPHK---------AKCTTLTHHK-CGAAI  338 (366)
T ss_dssp             CCCEEEE-EEEECSSCCSSCCCCEECT-T-SSEEEEECTTSCEEEEECCSSSGGG---------CEEEEECCTT-CCSCE
T ss_pred             Ccchhee-ccccccCCcEEEEEEcCCC-C-CcEEEEEecCCcEEEEECCCCCCcc---------ccceEEcccc-cCCce
Confidence            0100000 0111 12347778888862 1 256766655443 667765532211         011 112221 01335


Q ss_pred             CeEEeeCCCCeEEEeccCCCeEEEEeCC
Q psy731          392 GASSLDEETGVIFYALLVKSGVGCWNTF  419 (494)
Q Consensus       392 ~g~~~D~~~G~ly~~~~~~~aI~~w~~~  419 (494)
                      ..++++ .+|.+.++--....|..||..
T Consensus       339 ~~~~~s-~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          339 RQTSFS-RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEEEC-TTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEeC-CCCCeEEEEeCCCEEEEEEec
Confidence            667888 578777777778899999875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.39  E-value=6.9  Score=42.40  Aligned_cols=62  Identities=10%  Similarity=0.022  Sum_probs=44.8

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-----CCCeEEEEEccCCc-eeEEe
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-----GHNHIVVYNYRTND-SHIIH  227 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-----~~~~iIVyd~~~~~-~~rv~  227 (494)
                      .|+++|.+|++++-++.++..  ....+....++|.       ++.||+.-+     ..+.|..||.++|+ .|+++
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~--~~~~~~~ssP~v~-------~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          132 NVAALNAETGETVWKVENSDI--KVGSTLTIAPYVV-------KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEEETTTCCEEEEEECCCG--GGTCBCCSCCEEE-------TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEeecCCCC--CccceeecCCEEE-------CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence            799999999999988887651  1112344555663       457888765     35789999999987 58884

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=94.38  E-value=3.6  Score=39.09  Aligned_cols=216  Identities=9%  Similarity=-0.034  Sum_probs=110.5

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .|..||+.+++....+.+..     ....+..+.+.     .+..+++.+.
T Consensus        54 ~v~~~~~~~~~~~l~~~~~dg--------~i~vwd~~~~~~~~~~~~~~-----~~~~v~~~~~~-----~~~~~l~~~~  115 (372)
T 1k8k_C           54 QVTGVDWAPDSNRIVTCGTDR--------NAYVWTLKGRTWKPTLVILR-----INRAARCVRWA-----PNEKKFAVGS  115 (372)
T ss_dssp             CEEEEEEETTTTEEEEEETTS--------CEEEEEEETTEEEEEEECCC-----CSSCEEEEEEC-----TTSSEEEEEE
T ss_pred             cccEEEEeCCCCEEEEEcCCC--------eEEEEECCCCeeeeeEEeec-----CCCceeEEEEC-----CCCCEEEEEe
Confidence            455566666666555422222        58889999988777766544     33444555543     1345555554


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                       ..+.|.+||+..+..+.+.....                          .........+.+..     +..+++... .
T Consensus       116 -~d~~v~i~d~~~~~~~~~~~~~~--------------------------~~~~~~i~~~~~~~-----~~~~l~~~~-~  162 (372)
T 1k8k_C          116 -GSRVISICYFEQENDWWVCKHIK--------------------------KPIRSTVLSLDWHP-----NSVLLAAGS-C  162 (372)
T ss_dssp             -TTSSEEEEEEETTTTEEEEEEEC--------------------------TTCCSCEEEEEECT-----TSSEEEEEE-T
T ss_pred             -CCCEEEEEEecCCCcceeeeeee--------------------------cccCCCeeEEEEcC-----CCCEEEEEc-C
Confidence             35679999999988655521110                          00012233444432     233444432 3


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEe-e---eecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeec
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNF-Q---WQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTT  362 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f-~---~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T  362 (494)
                      +..|.+||+.....-    ......+-.... -.|+.. .   ....+..++++|+    ++.|+.....+. ++|.+.+
T Consensus       163 dg~i~~~d~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~i~d~~~  233 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVE----ERPAPTPWGSKM-PFGELMFESSSSCGWVHGVCFSAN----GSRVAWVSHDSTVCLADADK  233 (372)
T ss_dssp             TSCEEEEECCCTTTS----CCCCCBTTBSCC-CTTCEEEECCCCSSCEEEEEECSS----SSEEEEEETTTEEEEEEGGG
T ss_pred             CCCEEEEEccccccc----cccccccccccc-chhhheEecCCCCCeEEEEEECCC----CCEEEEEeCCCEEEEEECCC
Confidence            567888987532210    000000000000 001111 1   1234788999986    357777665553 5565543


Q ss_pred             hhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..+.          .  +..+..   .....++++ .+|.++.+- ..+.|..|+...
T Consensus       234 ~~~~----------~--~~~~~~---~~v~~~~~~-~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          234 KMAV----------A--TLASET---LPLLAVTFI-TESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TTEE----------E--EEECSS---CCEEEEEEE-ETTEEEEEE-TTSSCEEEEEET
T ss_pred             Ccee----------E--EEccCC---CCeEEEEEe-cCCCEEEEE-eCCeEEEEEccC
Confidence            2110          1  111222   234567888 577666655 889999999865

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.35  E-value=2.1  Score=41.94  Aligned_cols=95  Identities=15%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCce-eEEecCccccC
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDS-HIIHHNYLHFD  234 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~-~rv~~~~~~~d  234 (494)
                      -.|.++|+++++++.++.++.         ...++++       +..+|+++. .+.|.++|.++|+. |+...  .   
T Consensus       249 g~l~~~d~~tG~~~w~~~~~~---------~~~~~~~-------~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~--~---  306 (376)
T 3q7m_A          249 GNLTALDLRSGQIMWKRELGS---------VNDFIVD-------GNRIYLVDQ-NDRVMALTIDGGVTLWTQSD--L---  306 (376)
T ss_dssp             SCEEEEETTTCCEEEEECCCC---------EEEEEEE-------TTEEEEEET-TCCEEEEETTTCCEEEEECT--T---
T ss_pred             cEEEEEECCCCcEEeeccCCC---------CCCceEE-------CCEEEEEcC-CCeEEEEECCCCcEEEeecc--c---
Confidence            478999999999987776543         2345553       678999976 46799999998875 55421  0   


Q ss_pred             CCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcE-EEEe
Q psy731          235 PLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS-HIIH  305 (494)
Q Consensus       235 p~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~s-wrv~  305 (494)
                                               ....+..+++.       +..+|+.+. ...|.++|.++++. |+..
T Consensus       307 -------------------------~~~~~~~~~~~-------~~~l~v~~~-~g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          307 -------------------------LHRLLTSPVLY-------NGNLVVGDS-EGYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             -------------------------TTSCCCCCEEE-------TTEEEEECT-TSEEEEEETTTCCEEEEEE
T ss_pred             -------------------------CCCcccCCEEE-------CCEEEEEeC-CCeEEEEECCCCcEEEEEe
Confidence                                     00112223333       367888874 45799999988774 5554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=94.29  E-value=6.6  Score=41.76  Aligned_cols=28  Identities=14%  Similarity=0.269  Sum_probs=19.7

Q ss_pred             EEeeCCCCeEEEeccCCC----eEEEEeCCCC
Q psy731          394 SSLDEETGVIFYALLVKS----GVGCWNTFRG  421 (494)
Q Consensus       394 ~~~D~~~G~ly~~~~~~~----aI~~w~~~~~  421 (494)
                      .++++....||++....+    .|+.||.+++
T Consensus       361 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          361 AGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             EEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             eEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            578844446777766554    8999998764

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.91  E-value=4.4  Score=38.38  Aligned_cols=215  Identities=9%  Similarity=0.071  Sum_probs=104.6

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECC--CCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLR--QQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~--t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      .|..+...+++++.+.=....        .|..||+.  +.+.++.+.  .     ....+..+....   ..+..+++.
T Consensus        13 ~v~~~~~s~~~~~l~~~~~dg--------~i~iw~~~~~~~~~~~~~~--~-----h~~~v~~~~~~~---~~~~~~l~s   74 (379)
T 3jrp_A           13 LIHDAVLDYYGKRLATCSSDK--------TIKIFEVEGETHKLIDTLT--G-----HEGPVWRVDWAH---PKFGTILAS   74 (379)
T ss_dssp             CEEEEEECSSSSEEEEEETTS--------CEEEEEEETTEEEEEEEEC--C-----CSSCEEEEEECC---GGGCSEEEE
T ss_pred             cEEEEEEcCCCCEEEEEECCC--------cEEEEecCCCcceeeeEec--C-----CCCcEEEEEeCC---CCCCCEEEE
Confidence            455566667666555322111        47777776  444444432  2     222333333321   001344554


Q ss_pred             eeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          206 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       206 tDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                      +. ..+.|.+||+.+++...+....                            ........+.+....   ...+++...
T Consensus        75 ~~-~dg~v~iwd~~~~~~~~~~~~~----------------------------~~~~~v~~~~~~~~~---~~~~l~~~~  122 (379)
T 3jrp_A           75 CS-YDGKVLIWKEENGRWSQIAVHA----------------------------VHSASVNSVQWAPHE---YGPLLLVAS  122 (379)
T ss_dssp             EE-TTSCEEEEEEETTEEEEEEEEC----------------------------CCSSCEEEEEECCGG---GCSEEEEEE
T ss_pred             ec-cCCEEEEEEcCCCceeEeeeec----------------------------CCCcceEEEEeCCCC---CCCEEEEec
Confidence            44 3578999999998633331100                            011123334443210   023444432


Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCC---------CceeEEEeeCCCc-
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRD---------NFRVMYFHPLAST-  355 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~---------g~r~LYf~plss~-  355 (494)
                       .+..|.+||+.++.......             ..+    ....+..++.+|....         ..+.|......+. 
T Consensus       123 -~d~~i~v~d~~~~~~~~~~~-------------~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i  184 (379)
T 3jrp_A          123 -SDGKVSVVEFKENGTTSPII-------------IDA----HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV  184 (379)
T ss_dssp             -TTSEEEEEECCTTSCCCEEE-------------EEC----CTTCEEEEEECCCC----------CTTCEEEEEETTSCE
T ss_pred             -CCCcEEEEecCCCCceeeEE-------------ecC----CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeE
Confidence             45678899998764211110             000    1133666777763100         1256666655554 


Q ss_pred             ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCC--CeEEEeccCCCeEEEEeCCCC
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEET--GVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~--G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ++|.+.+....        ........+..   .....+++.|..  |.++++--....|..||..++
T Consensus       185 ~i~d~~~~~~~--------~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          185 KIWKYNSDAQT--------YVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             EEEEEETTTTE--------EEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             EEEEecCCCcc--------eeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            66666432110        00001111222   334577888432  788888778889999998873

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.83  E-value=4.5  Score=39.00  Aligned_cols=29  Identities=3%  Similarity=0.016  Sum_probs=21.8

Q ss_pred             CCeEEeeCCCC----------eEEEeccCCCeEEEEeCCC
Q psy731          391 SGASSLDEETG----------VIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       391 s~g~~~D~~~G----------~ly~~~~~~~aI~~w~~~~  420 (494)
                      ...++.. .+|          .++++--....|..|+.++
T Consensus       357 v~~~~~~-~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          357 VFDVKFL-KKGWRSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             EEEEEEE-CTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             eeEEEec-cccccccccccccceEEEecCCCcEEEEEcCC
Confidence            4567777 565          6777777888999999765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.75  E-value=6.2  Score=39.49  Aligned_cols=184  Identities=9%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEec-CccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHH-NYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~-~~~~~dp  235 (494)
                      .|..||+.+++....+.+..     ....+..+...     ..++...+|=+..+.|.+||++++....+.. +..    
T Consensus       143 ~i~lWd~~~~~~~~~~~~~g-----H~~~V~~l~f~-----p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~----  208 (435)
T 4e54_B          143 DIMLWNFGIKDKPTFIKGIG-----AGGSITGLKFN-----PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTI----  208 (435)
T ss_dssp             CEEEECSSCCSCCEEECCCS-----SSCCCCEEEEC-----SSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSC----
T ss_pred             EEEEEECCCCCceeEEEccC-----CCCCEEEEEEe-----CCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCC----
Confidence            57788888876555444432     34455566552     1223334454566789999998877666522 111    


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                               ......+.+..     +..++...+ .+..|.+||+.+...+.+.-         
T Consensus       209 -------------------------~~~~~~~~~~~-----~~~~l~~g~-~dg~i~~wd~~~~~~~~~~~---------  248 (435)
T 4e54_B          209 -------------------------NIWFCSLDVSA-----SSRMVVTGD-NVGNVILLNMDGKELWNLRM---------  248 (435)
T ss_dssp             -------------------------SCCCCCEEEET-----TTTEEEEEC-SSSBEEEEESSSCBCCCSBC---------
T ss_pred             -------------------------CccEEEEEECC-----CCCEEEEEe-CCCcEeeeccCcceeEEEec---------
Confidence                                     01112233321     234444443 34568899987654322210         


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS  394 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~  394 (494)
                                 -...|..|+++|++   ...|.-...-+. ++|.+.+.....         ......+..   .....+
T Consensus       249 -----------h~~~v~~v~~~p~~---~~~~~s~s~d~~v~iwd~~~~~~~~---------~~~~~~~h~---~~v~~~  302 (435)
T 4e54_B          249 -----------HKKKVTHVALNPCC---DWFLATASVDQTVKIWDLRQVRGKA---------SFLYSLPHR---HPVNAA  302 (435)
T ss_dssp             -----------CSSCEEEEEECTTC---SSEEEEEETTSBCCEEETTTCCSSS---------CCSBCCBCS---SCEEEC
T ss_pred             -----------ccceEEeeeecCCC---ceEEEEecCcceeeEEecccccccc---------eEEEeeecc---ccccce
Confidence                       01347789998863   233444444443 566543321100         011112222   223456


Q ss_pred             EeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          395 SLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       395 ~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +++ .+|..+++--..+.|..||...+
T Consensus       303 ~~s-pdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          303 CFS-PDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             CBC-TTSSEEEEEESSSCEEEEESSSS
T ss_pred             eEC-CCCCeeEEEcCCCEEEEEECCCC
Confidence            677 57877777778889999998764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.74  E-value=12  Score=42.77  Aligned_cols=212  Identities=8%  Similarity=0.028  Sum_probs=109.3

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      -.|..+...+++++.+.=....        .|..||+.+++.++++.-.       ......+.+.     .++.++..+
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~--------~i~vw~~~~~~~~~~~~~h-------~~~v~~~~~s-----~~~~~l~s~  675 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADK--------TLQVFKAETGEKLLDIKAH-------EDEVLCCAFS-----SDDSYIATC  675 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCCEEEEECCC-------SSCEEEEEEC-----TTSSEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCC--------eEEEEECCCCCEEEEeccC-------CCCEEEEEEe-----cCCCEEEEE
Confidence            4577777777777665421111        6899999999988876522       2334444442     234555555


Q ss_pred             eCCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          207 DSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                      . ..+.|.|||+.+++.-+. ..|.                               .....+.+...    .+..+.++-
T Consensus       676 ~-~d~~v~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~----~~~~~l~sg  719 (1249)
T 3sfz_A          676 S-ADKKVKIWDSATGKLVHTYDEHS-------------------------------EQVNCCHFTNK----SNHLLLATG  719 (1249)
T ss_dssp             E-TTSEEEEEETTTCCEEEEEECCS-------------------------------SCEEEEEECSS----SSCCEEEEE
T ss_pred             e-CCCeEEEEECCCCceEEEEcCCC-------------------------------CcEEEEEEecC----CCceEEEEE
Confidence            3 456799999999876544 1111                               11222233211    122233333


Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechh
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKV  364 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~  364 (494)
                      ..+..|.+||+.+++.-.....                   ....+..++++|++    +.|......+. ++|.+.+..
T Consensus       720 ~~d~~v~vwd~~~~~~~~~~~~-------------------h~~~v~~~~~sp~~----~~l~s~s~dg~v~vwd~~~~~  776 (1249)
T 3sfz_A          720 SNDFFLKLWDLNQKECRNTMFG-------------------HTNSVNHCRFSPDD----ELLASCSADGTLRLWDVRSAN  776 (1249)
T ss_dssp             ETTSCEEEEETTSSSEEEEECC-------------------CSSCEEEEEECSST----TEEEEEESSSEEEEEEGGGTE
T ss_pred             eCCCeEEEEECCCcchhheecC-------------------CCCCEEEEEEecCC----CEEEEEECCCeEEEEeCCCCc
Confidence            4466789999988764332211                   01346778888862    46666655554 666654432


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ....-.........-....+.  ......+++. .+|...++- ..+.|..||..++
T Consensus       777 ~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s-~dg~~l~~~-~~~~v~~~d~~~~  829 (1249)
T 3sfz_A          777 ERKSINVKRFFLSSEDPPEDV--EVIVKCCSWS-ADGDKIIVA-AKNKVLLFDIHTS  829 (1249)
T ss_dssp             EEEEEECCCCC--------CC--CCCBCCCCBC-TTSSEEEEE-ETTEEEEEETTTC
T ss_pred             ccceecccccccccCCccccc--cceEEEEEEC-CCCCEEEEE-cCCcEEEEEecCC
Confidence            111000000000000000000  1123456677 466544443 3688999998764

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.71  E-value=5.1  Score=38.40  Aligned_cols=80  Identities=13%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             eEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          127 TSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       127 vsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      -.|..+...+ ++++.+.=....        .|..||+.+++.++.+.++..        ...+.+  .....+..+++.
T Consensus       100 ~~v~~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~  161 (408)
T 4a11_B          100 YSVETVQWYPHDTGMFTSSSFDK--------TLKVWDTNTLQTADVFNFEET--------VYSHHM--SPVSTKHCLVAV  161 (408)
T ss_dssp             SCEEEEEECTTCTTCEEEEETTS--------EEEEEETTTTEEEEEEECSSC--------EEEEEE--CSSCSSCCEEEE
T ss_pred             CcEEEEEEccCCCcEEEEEeCCC--------eEEEeeCCCCccceeccCCCc--------eeeeEe--ecCCCCCcEEEE
Confidence            3455666655 443433321111        688999999999988886651        112222  111112234444


Q ss_pred             eeCCCCeEEEEEccCCceeE
Q psy731          206 ADSGHNHIVVYNYRTNDSHI  225 (494)
Q Consensus       206 tDs~~~~iIVyd~~~~~~~r  225 (494)
                      + +..+.|.+||+.++..-+
T Consensus       162 ~-~~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          162 G-TRGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             E-ESSSSEEEEESSSSCCCE
T ss_pred             E-cCCCeEEEEeCCCcceee
Confidence            4 445679999998876533

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=93.67  E-value=5.3  Score=38.44  Aligned_cols=115  Identities=10%  Similarity=-0.054  Sum_probs=58.5

Q ss_pred             EEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEee
Q psy731          282 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAV  360 (494)
Q Consensus       282 YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V  360 (494)
                      +++-..+..|.+||+++++.-......                   ...+..++++|+    ++.|+.....+. .+|.+
T Consensus       303 l~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~~~~s~~----~~~l~~~~~dg~i~i~~~  359 (425)
T 1r5m_A          303 VISCSMDGSVRLWSLKQNTLLALSIVD-------------------GVPIFAGRISQD----GQKYAVAFMDGQVNVYDL  359 (425)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECT-------------------TCCEEEEEECTT----SSEEEEEETTSCEEEEEC
T ss_pred             EEEEeCCCcEEEEECCCCcEeEecccC-------------------CccEEEEEEcCC----CCEEEEEECCCeEEEEEC
Confidence            333345678899999877643322110                   123677899886    357777665554 77777


Q ss_pred             echhhcCCCcCcc--cc--ccceEEecc-cCCCC--CCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          361 TTKVLQNRSLDFS--RS--NFDFKVMGS-RGTGS--QSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       361 ~T~~L~~~~~~~~--~~--~~~v~~~G~-~G~~~--qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      .+.......+...  ..  ....+.+.. ++...  ....+++. .+|.++++--....|..|+..+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~g  425 (425)
T 1r5m_A          360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN-CAGNKISVAYSLQEGSVVAIPG  425 (425)
T ss_dssp             HHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC-TTSSEEEEEESSSCCEEEECCC
T ss_pred             CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc-CCCceEEEEecCceEEEEeecC
Confidence            6644211111000  00  000011111 11111  34567777 5665555555677788888653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.52  E-value=3.3  Score=40.76  Aligned_cols=100  Identities=12%  Similarity=0.186  Sum_probs=59.5

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee--CCCCeEEEEEccCCce-eEEecCcccc
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD--SGHNHIVVYNYRTNDS-HIIHHNYLHF  233 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD--s~~~~iIVyd~~~~~~-~rv~~~~~~~  233 (494)
                      +|..||+++++.++.+....     .......+...     .++.+++..-  +..+.|.+||+.++.. ....      
T Consensus       199 ~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~------  262 (402)
T 2aq5_A          199 RVRVIEPRKGTVVAEKDRPH-----EGTRPVHAVFV-----SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ------  262 (402)
T ss_dssp             EEEEEETTTTEEEEEEECSS-----CSSSCCEEEEC-----STTEEEEEEECTTCCEEEEEEETTBCSSCSEEE------
T ss_pred             cEEEEeCCCCceeeeeccCC-----CCCcceEEEEc-----CCCcEEEEeccCCCCceEEEEcCccccCCceEE------
Confidence            78889999998888774222     12223444442     1344444442  5667899999988664 1110      


Q ss_pred             CCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCc
Q psy731          234 DPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTND  300 (494)
Q Consensus       234 dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~  300 (494)
                                       .      .........+.++.     ++.++|++-..+..|.+||+.+++
T Consensus       263 -----------------~------~~~~~~v~~~~~s~-----~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          263 -----------------E------LDTSSGVLLPFFDP-----DTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             -----------------E------CCCCSSCEEEEEET-----TTTEEEEEETTCSCEEEEEECSST
T ss_pred             -----------------e------ccCCCceeEEEEcC-----CCCEEEEEEcCCCeEEEEEecCCC
Confidence                             0      00111234444442     356788887677889999999877

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.49  E-value=5.3  Score=39.35  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=78.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC--CCCeEEEEEccCCceeEE-ecCcccc
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS--GHNHIVVYNYRTNDSHII-HHNYLHF  233 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs--~~~~iIVyd~~~~~~~rv-~~~~~~~  233 (494)
                      .|..||+.+++.++.+.-       ..+.+..+.+.     ..+.+++++-+  ..+.|.+||+.+++..+. .+     
T Consensus       240 ~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~-----p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-----  302 (401)
T 4aez_A          240 VVQIWDARSSIPKFTKTN-------HNAAVKAVAWC-----PWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-----  302 (401)
T ss_dssp             CEEEEETTCSSEEEEECC-------CSSCCCEEEEC-----TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-----
T ss_pred             eEEEccCCCCCccEEecC-------CcceEEEEEEC-----CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-----
Confidence            577788888877765432       23344555542     13445566544  578899999998876554 11     


Q ss_pred             CCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe-cCCCCeEEEEEcCCCcEEEEecCCcccC
Q psy731          234 DPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA-DSGHNHIVVYNYRTNDSHIIHHNYLHFD  312 (494)
Q Consensus       234 dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~-D~~~~gliVydl~~~~swrv~~~~~~~d  312 (494)
                                                 .+....+....     +..+++.+ ...+..|.+||+.+++.-+...-     
T Consensus       303 ---------------------------~~~v~~~~~s~-----~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-----  345 (401)
T 4aez_A          303 ---------------------------GSQVTSLIWSP-----HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI-----  345 (401)
T ss_dssp             ---------------------------SSCEEEEEECS-----SSSEEEEEECTTTCEEEEEEEETTEEEEEEEE-----
T ss_pred             ---------------------------CCcEEEEEECC-----CCCeEEEEeecCCCcEEEEecCCccceeEEEe-----
Confidence                                       11233344432     23444444 33467889999887654332110     


Q ss_pred             CCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          313 PLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       313 P~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                              .+    ....+..++++|+    +++|+.....+. ++|.+.+..+
T Consensus       346 --------~~----h~~~v~~~~~s~d----g~~l~s~~~dg~i~iw~~~~~~~  383 (401)
T 4aez_A          346 --------PA----HDTRVLYSALSPD----GRILSTAASDENLKFWRVYDGDH  383 (401)
T ss_dssp             --------EC----CSSCCCEEEECTT----SSEEEEECTTSEEEEEECCC---
T ss_pred             --------cC----CCCCEEEEEECCC----CCEEEEEeCCCcEEEEECCCCcc
Confidence                    00    0134777899986    357776665554 6777765443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.38  E-value=7.2  Score=41.88  Aligned_cols=202  Identities=12%  Similarity=0.080  Sum_probs=102.0

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+...+++++.+.=....        .|.+||+.+++.++++.-..       ..+..+.+.     .+..++..+. 
T Consensus        58 v~~~~~s~~~~~l~~~~~dg--------~i~vw~~~~~~~~~~~~~~~-------~~v~~~~~s-----~~~~~l~~~~-  116 (814)
T 3mkq_A           58 VRAGKFIARKNWIIVGSDDF--------RIRVFNYNTGEKVVDFEAHP-------DYIRSIAVH-----PTKPYVLSGS-  116 (814)
T ss_dssp             EEEEEEEGGGTEEEEEETTS--------EEEEEETTTCCEEEEEECCS-------SCEEEEEEC-----SSSSEEEEEE-
T ss_pred             EEEEEEeCCCCEEEEEeCCC--------eEEEEECCCCcEEEEEecCC-------CCEEEEEEe-----CCCCEEEEEc-
Confidence            44555555555444322222        78889999998887765322       233344432     2344555444 


Q ss_pred             CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      ..+.|.+||+.++......-                             .........+.....    +...++.. ..+
T Consensus       117 ~dg~i~vw~~~~~~~~~~~~-----------------------------~~~~~~v~~~~~~p~----~~~~l~~~-~~d  162 (814)
T 3mkq_A          117 DDLTVKLWNWENNWALEQTF-----------------------------EGHEHFVMCVAFNPK----DPSTFASG-CLD  162 (814)
T ss_dssp             TTSEEEEEEGGGTSEEEEEE-----------------------------ECCSSCEEEEEEETT----EEEEEEEE-ETT
T ss_pred             CCCEEEEEECCCCceEEEEE-----------------------------cCCCCcEEEEEEEcC----CCCEEEEE-eCC
Confidence            35689999998874332200                             001112333343310    11223332 245


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcC
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQN  367 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~  367 (494)
                      ..|.+||+.+++.-......                  ...++..++.+|.. + ++.|+...-.+. .+|.+.+...  
T Consensus       163 g~v~vwd~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~-~-~~~l~~~~~dg~i~~~d~~~~~~--  220 (814)
T 3mkq_A          163 RTVKVWSLGQSTPNFTLTTG------------------QERGVNYVDYYPLP-D-KPYMITASDDLTIKIWDYQTKSC--  220 (814)
T ss_dssp             SEEEEEETTCSSCSEEEECC------------------CTTCCCEEEECCST-T-CCEEEEECTTSEEEEEETTTTEE--
T ss_pred             CeEEEEECCCCcceeEEecC------------------CCCCEEEEEEEECC-C-CCEEEEEeCCCEEEEEECCCCcE--
Confidence            67889998765421111100                  01345667777721 1 245555544443 4444322110  


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                                ..+..+..   .....+++. .+|.++++--....|..||..++
T Consensus       221 ----------~~~~~~~~---~~v~~~~~~-~~~~~l~~~~~dg~v~vwd~~~~  260 (814)
T 3mkq_A          221 ----------VATLEGHM---SNVSFAVFH-PTLPIIISGSEDGTLKIWNSSTY  260 (814)
T ss_dssp             ----------EEEEECCS---SCEEEEEEC-SSSSEEEEEETTSCEEEEETTTC
T ss_pred             ----------EEEEcCCC---CCEEEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Confidence                      01111222   234567787 57776677677788999998864

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=93.32  E-value=5.4  Score=37.49  Aligned_cols=58  Identities=5%  Similarity=0.036  Sum_probs=37.3

Q ss_pred             CCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          391 SGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       391 s~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      ...++++ .+|.++++--....|..||..++..     +..+..   .-....++.+.++|.+.+++
T Consensus       276 v~~~~~s-p~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~---~~~~v~~~~~s~~g~~l~~~  333 (368)
T 3mmy_A          276 VNGIAFH-PVHGTLATVGSDGRFSFWDKDARTK-----LKTSEQ---LDQPISACCFNHNGNIFAYA  333 (368)
T ss_dssp             EEEEEEC-TTTCCEEEEETTSCEEEEETTTTEE-----EEECCC---CSSCEEEEEECTTSSCEEEE
T ss_pred             eEEEEEe-cCCCEEEEEccCCeEEEEECCCCcE-----EEEecC---CCCCceEEEECCCCCeEEEE
Confidence            4567888 5776666666788899999987422     122211   11356678888888765554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=93.15  E-value=6.3  Score=37.76  Aligned_cols=31  Identities=13%  Similarity=0.334  Sum_probs=22.9

Q ss_pred             CCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          390 QSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       390 qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ....++++ .+|..+++--....|..||..++
T Consensus       247 ~v~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          247 KVNGLCFT-SDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             CEEEEEEC-TTSSEEEEEETTSCEEEEETTTC
T ss_pred             ceeEEEEc-CCCCEEEEecCCCeEEEEECCCC
Confidence            34567888 57776666667788999998764

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=93.07  E-value=8.3  Score=42.15  Aligned_cols=107  Identities=9%  Similarity=0.097  Sum_probs=58.1

Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC---------CCceeEEEeeCCCc-c
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR---------DNFRVMYFHPLAST-T  356 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~---------~g~r~LYf~plss~-~  356 (494)
                      .+..|.+||+.++.....             ....+    ....+..++.+|...         .+++.|+.....+. +
T Consensus       121 ~dg~I~vwdl~~~~~~~~-------------~~~~~----~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~  183 (753)
T 3jro_A          121 SDGKVSVVEFKENGTTSP-------------IIIDA----HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK  183 (753)
T ss_dssp             TTSEEEEEECCSSSCCCC-------------EEEEC----CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEE
T ss_pred             CCCcEEEEEeecCCCcce-------------eEeec----CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEE
Confidence            456788999987632111             01111    123466677776310         01356777666665 7


Q ss_pred             eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCC--CeEEEeccCCCeEEEEeCCCC
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEET--GVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~--G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +|.+.+..-      .  ........+..   .....+++.|..  |.++++--....|..||..++
T Consensus       184 iwd~~~~~~------~--~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          184 IWKYNSDAQ------T--YVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             EEEEETTTT------E--EEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             EEeccCCcc------c--ceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            777654310      0  00001112222   345677888432  888888888889999999873

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=93.04  E-value=15  Score=41.72  Aligned_cols=54  Identities=13%  Similarity=0.060  Sum_probs=32.9

Q ss_pred             CCeEEeeCCCCeEEEe-------------ccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCce-EEEE
Q psy731          391 SGASSLDEETGVIFYA-------------LLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGV-LWVL  456 (494)
Q Consensus       391 s~g~~~D~~~G~ly~~-------------~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~-Lwvl  456 (494)
                      ..++++. .+|.+|+.             .-....|..||..+++      ...+.      .-+..+.+.+||. |++.
T Consensus       559 ~~~~~~s-~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~------~~~l~------~~v~~~~~S~DG~~l~~~  625 (1045)
T 1k32_A          559 YRMIIPL-ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------VTEVK------NNLTDLRLSADRKTVMVR  625 (1045)
T ss_dssp             EEEEEEC-SSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC------EEEEE------EEEEEEEECTTSCEEEEE
T ss_pred             hhheEEc-CCCeEEEEecccCcccccccccCCCceEEEEECCCCc------EEEee------cCcceEEECCCCCEEEEE
Confidence            3466777 68876763             2235689999988731      23333      2244667888884 5544


Q ss_pred             e
Q psy731          457 S  457 (494)
Q Consensus       457 s  457 (494)
                      +
T Consensus       626 ~  626 (1045)
T 1k32_A          626 K  626 (1045)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=92.99  E-value=6  Score=37.11  Aligned_cols=201  Identities=9%  Similarity=0.056  Sum_probs=107.4

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .|..||+.+++.++++.-..       ..+..+.+.     .+..+++. =
T Consensus        67 ~v~~~~~~~~~~~l~s~~~d~--------~i~vwd~~~~~~~~~~~~~~-------~~v~~~~~~-----~~~~~l~s-~  125 (312)
T 4ery_A           67 GISDVAWSSDSNLLVSASDDK--------TLKIWDVSSGKCLKTLKGHS-------NYVFCCNFN-----PQSNLIVS-G  125 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTS--------EEEEEETTTCCEEEEEECCS-------SCEEEEEEC-----SSSSEEEE-E
T ss_pred             ceEEEEEcCCCCEEEEECCCC--------EEEEEECCCCcEEEEEcCCC-------CCEEEEEEc-----CCCCEEEE-E
Confidence            456677777776655432222        68889999999888765332       223333332     13344433 3


Q ss_pred             CCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      +..+.|.+||+.+++.-+. ..+                               ......+.+..     +..+++... 
T Consensus       126 ~~d~~i~iwd~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~-----~~~~l~~~~-  168 (312)
T 4ery_A          126 SFDESVRIWDVKTGKCLKTLPAH-------------------------------SDPVSAVHFNR-----DGSLIVSSS-  168 (312)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC-------------------------------SSCEEEEEECT-----TSSEEEEEE-
T ss_pred             eCCCcEEEEECCCCEEEEEecCC-------------------------------CCcEEEEEEcC-----CCCEEEEEe-
Confidence            4456799999998875433 110                               01122333321     233444443 


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||+++++.-+.....   .               ...+..++++|+    ++.|......+. ++|.+.+..+
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~---~---------------~~~~~~~~~~~~----~~~l~~~~~d~~i~iwd~~~~~~  226 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDD---D---------------NPPVSFVKFSPN----GKYILAATLDNTLKLWDYSKGKC  226 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCS---S---------------CCCEEEEEECTT----SSEEEEEETTTEEEEEETTTTEE
T ss_pred             CCCcEEEEECCCCceeeEEecc---C---------------CCceEEEEECCC----CCEEEEEcCCCeEEEEECCCCcE
Confidence            3567889999887643322110   0               012556888886    356766665554 5555433211


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                                  .....|..+. .........+..|.++++--....|..||..++
T Consensus       227 ------------~~~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          227 ------------LKTYTGHKNE-KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             ------------EEEECSSCCS-SSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             ------------EEEEEecCCc-eEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence                        0111222211 111222333356777777778889999999873

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.92  E-value=7.1  Score=37.77  Aligned_cols=107  Identities=8%  Similarity=0.021  Sum_probs=59.4

Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC----CcceEeee
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA----STTEFAVT  361 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls----s~~ly~V~  361 (494)
                      ..+..|.+||+++++.-+........         .|    ....+..++++|++   ...|......    .-++|.+.
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~---------~~----~~~~v~~~~~~~~~---~~~l~~~~~d~~~~~i~~~d~~  248 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPN---------SG----IKQQLSVVEWHPKN---STRVATATGSDNDPSILIWDLR  248 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCS---------SC----CCCCEEEEEECSSC---TTEEEEEECCSSSCCCCEEETT
T ss_pred             cCCCCEEEEECCCCCcceEEeccccc---------cc----cCCceEEEEECCCC---CCEEEEEECCCCCceEEEEeCC
Confidence            34567999999987654332211000         00    02347789999862   3455555554    23666654


Q ss_pred             chhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +...   .      ...++ .+..   .....+++.|..|.++++--....|..||..++
T Consensus       249 ~~~~---~------~~~~~-~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~  295 (416)
T 2pm9_A          249 NANT---P------LQTLN-QGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA  295 (416)
T ss_dssp             STTS---C------SBCCC-SCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSC
T ss_pred             CCCC---C------cEEee-cCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC
Confidence            4210   0      00010 0222   234567777447877777778889999998874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=92.81  E-value=12  Score=40.04  Aligned_cols=201  Identities=12%  Similarity=0.058  Sum_probs=104.2

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+-=....        .|..||+.+++.++++.-..       ..+..+.+.     .++.++ +|=
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg--------~v~vwd~~~~~~~~~~~~h~-------~~v~~~~~s-----~~~~~l-~s~  490 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDG--------ELRLWDLAAGVSTRRFVGHT-------KDVLSVAFS-----LDNRQI-VSA  490 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTS--------EEEEEETTTTEEEEEEECCS-------SCEEEEEEC-----TTSSCE-EEE
T ss_pred             cEEEEEECCCCCEEEEEeCCC--------cEEEEECCCCcceeEEeCCC-------CCEEEEEEe-----CCCCEE-EEE
Confidence            355666667776555321111        78899999999888765322       223333332     122333 344


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      +..+.|.+||........+.....               +|            ......+.+..   +..... .++=..
T Consensus       491 s~D~~i~iwd~~~~~~~~~~~~~~---------------~h------------~~~v~~~~~~~---~~~~~~-l~s~s~  539 (694)
T 3dm0_A          491 SRDRTIKLWNTLGECKYTISEGGE---------------GH------------RDWVSCVRFSP---NTLQPT-IVSASW  539 (694)
T ss_dssp             ETTSCEEEECTTSCEEEEECSSTT---------------SC------------SSCEEEEEECS---CSSSCE-EEEEET
T ss_pred             eCCCEEEEEECCCCcceeeccCCC---------------CC------------CCcEEEEEEeC---CCCcce-EEEEeC
Confidence            456789999987766555521000               00            01122222221   111112 223334


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~  366 (494)
                      +..|.+||+.+++..+.....                   ...+..++++|++    +.|.-....+. ++|.+.+... 
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h-------------------~~~v~~v~~spdg----~~l~sg~~Dg~i~iwd~~~~~~-  595 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGH-------------------TGYVSTVAVSPDG----SLCASGGKDGVVLLWDLAEGKK-  595 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCC-------------------SSCEEEEEECTTS----SEEEEEETTSBCEEEETTTTEE-
T ss_pred             CCeEEEEECCCCcEEEEEcCC-------------------CCCEEEEEEeCCC----CEEEEEeCCCeEEEEECCCCce-
Confidence            667899999887654432110                   1236778998862    55665555443 6666543211 


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                                  +..+..   ......+++. .+|.+..+- ..+.|..||..++
T Consensus       596 ------------~~~~~~---~~~v~~~~~s-p~~~~l~~~-~~~~i~iwd~~~~  633 (694)
T 3dm0_A          596 ------------LYSLEA---NSVIHALCFS-PNRYWLCAA-TEHGIKIWDLESK  633 (694)
T ss_dssp             ------------EECCBC---SSCEEEEEEC-SSSSEEEEE-ETTEEEEEETTTT
T ss_pred             ------------EEEecC---CCcEEEEEEc-CCCcEEEEE-cCCCEEEEECCCC
Confidence                        000111   1234566777 566655443 4577999999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=92.53  E-value=7.8  Score=37.23  Aligned_cols=72  Identities=8%  Similarity=-0.000  Sum_probs=41.4

Q ss_pred             cceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEec
Q psy731          329 TGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYAL  407 (494)
Q Consensus       329 ~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~  407 (494)
                      ..+..|+++|+    ++.|+.....+. ++|.+.+..+            .....+..   .....+++. .+| ++++-
T Consensus       248 ~~i~~~~~~~~----~~~l~~~~~d~~i~i~d~~~~~~------------~~~~~~~~---~~i~~~~~~-~~~-~l~~~  306 (425)
T 1r5m_A          248 GPISVLEFNDT----NKLLLSASDDGTLRIWHGGNGNS------------QNCFYGHS---QSIVSASWV-GDD-KVISC  306 (425)
T ss_dssp             SCEEEEEEETT----TTEEEEEETTSCEEEECSSSBSC------------SEEECCCS---SCEEEEEEE-TTT-EEEEE
T ss_pred             CceEEEEECCC----CCEEEEEcCCCEEEEEECCCCcc------------ceEecCCC---ccEEEEEEC-CCC-EEEEE
Confidence            34677888875    246665554443 4444332111            11111222   335667888 567 66666


Q ss_pred             cCCCeEEEEeCCCC
Q psy731          408 LVKSGVGCWNTFRG  421 (494)
Q Consensus       408 ~~~~aI~~w~~~~~  421 (494)
                      -....|..||..++
T Consensus       307 ~~d~~i~i~d~~~~  320 (425)
T 1r5m_A          307 SMDGSVRLWSLKQN  320 (425)
T ss_dssp             ETTSEEEEEETTTT
T ss_pred             eCCCcEEEEECCCC
Confidence            77889999999774

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.18  E-value=10  Score=37.77  Aligned_cols=30  Identities=7%  Similarity=0.113  Sum_probs=23.5

Q ss_pred             CCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          391 SGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       391 s~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ..+++++ .+|..+++--....|.+||..++
T Consensus       341 v~~v~~~-~~g~~l~s~s~D~~i~vwd~~~~  370 (410)
T 1vyh_C          341 VRGVLFH-SGGKFILSCADDKTLRVWDYKNK  370 (410)
T ss_dssp             EEEEEEC-SSSSCEEEEETTTEEEEECCTTS
T ss_pred             EEEEEEc-CCCCEEEEEeCCCeEEEEECCCC
Confidence            4577888 67877777777889999999764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.05  E-value=9.4  Score=37.13  Aligned_cols=68  Identities=9%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEE
Q psy731          136 PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVV  215 (494)
Q Consensus       136 ~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIV  215 (494)
                      ..++||+.....         .|.++|.+|++++-++.++..       ....++++       ++.+|+.- ..+.|+.
T Consensus       102 ~~~~v~v~~~~g---------~l~a~d~~tG~~~W~~~~~~~-------~~~~p~~~-------~~~v~v~~-~~g~l~~  157 (376)
T 3q7m_A          102 SGGHVYIGSEKA---------QVYALNTSDGTVAWQTKVAGE-------ALSRPVVS-------DGLVLIHT-SNGQLQA  157 (376)
T ss_dssp             ETTEEEEEETTS---------EEEEEETTTCCEEEEEECSSC-------CCSCCEEE-------TTEEEEEC-TTSEEEE
T ss_pred             eCCEEEEEcCCC---------EEEEEECCCCCEEEEEeCCCc-------eEcCCEEE-------CCEEEEEc-CCCeEEE
Confidence            468999975432         799999999999988887752       22334443       46788864 3468999


Q ss_pred             EEccCCc-eeEEe
Q psy731          216 YNYRTND-SHIIH  227 (494)
Q Consensus       216 yd~~~~~-~~rv~  227 (494)
                      +|.++|+ .|+..
T Consensus       158 ~d~~tG~~~W~~~  170 (376)
T 3q7m_A          158 LNEADGAVKWTVN  170 (376)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCcEEEEEe
Confidence            9998886 57773

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=92.00  E-value=3.6  Score=46.73  Aligned_cols=130  Identities=12%  Similarity=0.136  Sum_probs=72.0

Q ss_pred             CcEEEEecCCCCeEE-EEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc
Q psy731          278 DAFLYIADSGHNHIV-VYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT  356 (494)
Q Consensus       278 ~~~~YI~D~~~~gli-Vydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~  356 (494)
                      +.++|.+|  ...|. +||+.+++..++..+.                    ..+..+++||+    +++|++..-.+ .
T Consensus       349 ~~l~~~s~--~~~l~~~~d~~~~~~~~l~~~~--------------------~~~~~~~~SpD----G~~la~~~~~~-~  401 (1045)
T 1k32_A          349 VAFIHGTR--EGDFLGIYDYRTGKAEKFEENL--------------------GNVFAMGVDRN----GKFAVVANDRF-E  401 (1045)
T ss_dssp             EEEEEEET--TEEEEEEEETTTCCEEECCCCC--------------------CSEEEEEECTT----SSEEEEEETTS-E
T ss_pred             CeEEEEEC--CCceEEEEECCCCCceEecCCc--------------------cceeeeEECCC----CCEEEEECCCC-e
Confidence            45777777  66888 9999887655443110                    12566899997    37888765443 4


Q ss_pred             eEeeechhhcCCCcCccccccceEEe-cccCCCCCCCeEEeeCCCCe-EEEeccCC---------CeEEEEeCCCCcccc
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVM-GSRGTGSQSGASSLDEETGV-IFYALLVK---------SGVGCWNTFRGEEYN  425 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~-G~~G~~~qs~g~~~D~~~G~-ly~~~~~~---------~aI~~w~~~~~~~~~  425 (494)
                      ++.+..+   ...        ..+.. +..   .....++.. .+|. |.++....         ..|..||..+|.   
T Consensus       402 v~~~d~~---tg~--------~~~~~~~~~---~~v~~~~~S-pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~---  463 (1045)
T 1k32_A          402 IMTVDLE---TGK--------PTVIERSRE---AMITDFTIS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK---  463 (1045)
T ss_dssp             EEEEETT---TCC--------EEEEEECSS---SCCCCEEEC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE---
T ss_pred             EEEEECC---CCc--------eEEeccCCC---CCccceEEC-CCCCeEEEEecCccccccCCCCCeEEEEECCCCc---
Confidence            4444321   111        11111 222   233567888 4664 55554432         589999998742   


Q ss_pred             ccceeeeeecCCeEecccceEEcCCc-eEEEEec
Q psy731          426 EKSMGLVAEDNATLIYPSDIRVDRTG-VLWVLSN  458 (494)
Q Consensus       426 ~~~~~~v~~d~~~l~~pd~~~id~~g-~Lwvlsn  458 (494)
                         ...+...   ...+..+.+.++| .||+.++
T Consensus       464 ---~~~l~~~---~~~~~~~~~spdG~~l~~~s~  491 (1045)
T 1k32_A          464 ---IFAATTE---NSHDYAPAFDADSKNLYYLSY  491 (1045)
T ss_dssp             ---EEECSCS---SSBEEEEEECTTSCEEEEEES
T ss_pred             ---EEEeeCC---CcccCCceEcCCCCEEEEEec
Confidence               1222211   1123345667777 4777775

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=91.85  E-value=9.4  Score=36.69  Aligned_cols=173  Identities=10%  Similarity=0.115  Sum_probs=95.1

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      ++..||+.+++...++.-..       ..+..+.+.     .+..++... +..+.|.+||+.+++.-+. ..+.     
T Consensus       145 ~v~i~~~~~~~~~~~~~~~~-------~~v~~~~~s-----pdg~~lasg-~~dg~i~iwd~~~~~~~~~~~~h~-----  206 (321)
T 3ow8_A          145 KVNIFGVESGKKEYSLDTRG-------KFILSIAYS-----PDGKYLASG-AIDGIINIFDIATGKLLHTLEGHA-----  206 (321)
T ss_dssp             EEEEEETTTCSEEEEEECSS-------SCEEEEEEC-----TTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCS-----
T ss_pred             cEEEEEcCCCceeEEecCCC-------ceEEEEEEC-----CCCCEEEEE-cCCCeEEEEECCCCcEEEEEcccC-----
Confidence            67888998888776554332       233334332     133444433 3456799999998876443 1110     


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                                .....+.+..     +..++... ..+..|.+||+++++.-+...         
T Consensus       207 --------------------------~~v~~l~~sp-----d~~~l~s~-s~dg~i~iwd~~~~~~~~~~~---------  245 (321)
T 3ow8_A          207 --------------------------MPIRSLTFSP-----DSQLLVTA-SDDGYIKIYDVQHANLAGTLS---------  245 (321)
T ss_dssp             --------------------------SCCCEEEECT-----TSCEEEEE-CTTSCEEEEETTTCCEEEEEC---------
T ss_pred             --------------------------CceeEEEEcC-----CCCEEEEE-cCCCeEEEEECCCcceeEEEc---------
Confidence                                      1123344431     23333333 345668899998765432211         


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeE
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGAS  394 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~  394 (494)
                            |    -...+..++++|++    +.|.-....++ ++|.+.+..+            ..+..+..   ....++
T Consensus       246 ------~----h~~~v~~~~~sp~~----~~l~s~s~D~~v~iwd~~~~~~------------~~~~~~h~---~~v~~v  296 (321)
T 3ow8_A          246 ------G----HASWVLNVAFCPDD----THFVSSSSDKSVKVWDVGTRTC------------VHTFFDHQ---DQVWGV  296 (321)
T ss_dssp             ------C----CSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTTEE------------EEEECCCS---SCEEEE
T ss_pred             ------C----CCCceEEEEECCCC----CEEEEEeCCCcEEEEeCCCCEE------------EEEEcCCC---CcEEEE
Confidence                  0    01236779999862    56666655554 6666543211            01112322   234567


Q ss_pred             EeeCCCCeEEEeccCCCeEEEEeC
Q psy731          395 SLDEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       395 ~~D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      ++. .+|...++--....|..||.
T Consensus       297 ~~s-~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          297 KYN-GNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEC-TTSSEEEEEETTCCEEEEEC
T ss_pred             EEC-CCCCEEEEEeCCCeEEEEeC
Confidence            787 67776777777788889984

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=91.76  E-value=6.1  Score=41.15  Aligned_cols=102  Identities=7%  Similarity=0.014  Sum_probs=53.9

Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC---
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS---  354 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss---  354 (494)
                      +..+|++... .++.+||+++++..++....                     + ..++.||++    ++|+|..-.+   
T Consensus       122 ~~~~~~s~~~-~~~~l~d~~~g~~~~l~~~~---------------------~-~~~~~spDG----~~la~~~~~~~~~  174 (582)
T 3o4h_A          122 EAVVFTGATE-DRVALYALDGGGLRELARLP---------------------G-FGFVSDIRG----DLIAGLGFFGGGR  174 (582)
T ss_dssp             SCEEEEEECS-SCEEEEEEETTEEEEEEEES---------------------S-CEEEEEEET----TEEEEEEEEETTE
T ss_pred             CeEEEEecCC-CCceEEEccCCcEEEeecCC---------------------C-ceEEECCCC----CEEEEEEEcCCCC
Confidence            4566666543 45669999988766665311                     1 347788873    6777644321   


Q ss_pred             cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCC-CeEEEEeCCCC
Q psy731          355 TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVK-SGVGCWNTFRG  421 (494)
Q Consensus       355 ~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~-~aI~~w~~~~~  421 (494)
                      ..+|.++.+   ...        ..++.+..   ......+.. .+|. |+.++-.. ..|..||.++|
T Consensus       175 ~~i~~~d~~---~g~--------~~~l~~~~---~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          175 VSLFTSNLS---SGG--------LRVFDSGE---GSFSSASIS-PGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             EEEEEEETT---TCC--------CEEECCSS---CEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             eEEEEEcCC---CCC--------ceEeecCC---CccccceEC-CCCCEEEEccCCCeeEEEEEcCCCC
Confidence            245555421   111        01112222   123456777 4664 44333222 27999999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=91.45  E-value=3.8  Score=41.13  Aligned_cols=126  Identities=10%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCc--eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTND--SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANC  276 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~--~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c  276 (494)
                      ...+++++=+..+.|.+||+++..  ...+..|                               ......+.+..     
T Consensus       288 ~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h-------------------------------~~~v~~i~~sp-----  331 (430)
T 2xyi_A          288 YSEFILATGSADKTVALWDLRNLKLKLHSFESH-------------------------------KDEIFQVQWSP-----  331 (430)
T ss_dssp             SCTTEEEEEETTSEEEEEETTCTTSCSEEEECC-------------------------------SSCEEEEEECS-----
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC-------------------------------CCCEEEEEECC-----
Confidence            455677777777889999998743  2222110                               11233344432     


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEE-eeCCCc
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYF-HPLAST  355 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf-~plss~  355 (494)
                      ++.+++++-..+..|.|||+.....-..... ....|....+...|.    ...+..++.+|++    ++++. ..-.+.
T Consensus       332 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~h----~~~v~~~~~~p~~----~~~l~s~s~dg~  402 (430)
T 2xyi_A          332 HNETILASSGTDRRLHVWDLSKIGEEQSTED-AEDGPPELLFIHGGH----TAKISDFSWNPNE----PWIICSVSEDNI  402 (430)
T ss_dssp             SCTTEEEEEETTSCCEEEEGGGTTCCCCHHH-HHHCCTTEEEECCCC----SSCEEEEEECSSS----TTEEEEEETTSE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccCccc-cccCCcceEEEcCCC----CCCceEEEECCCC----CCEEEEEECCCC
Confidence            2334555555677899999986321000000 000000111111111    2347889999863    44444 555554


Q ss_pred             -ceEeeechhhcCCC
Q psy731          356 -TEFAVTTKVLQNRS  369 (494)
Q Consensus       356 -~ly~V~T~~L~~~~  369 (494)
                       ++|.++...+.++.
T Consensus       403 i~iw~~~~~~~~~~~  417 (430)
T 2xyi_A          403 MQVWQMAENVYNDEE  417 (430)
T ss_dssp             EEEEEECHHHHCC--
T ss_pred             EEEeEcccccccCCC
Confidence             89999999987654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.24  E-value=11  Score=36.18  Aligned_cols=19  Identities=11%  Similarity=0.244  Sum_probs=14.6

Q ss_pred             CCCCeEEEEEccCCceeEE
Q psy731          208 SGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv  226 (494)
                      .....|.++|+.++...++
T Consensus       165 ~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          165 NPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             CCCEEEEEEETTTCCEEEE
T ss_pred             CCcceEEEEECCCCcEEee
Confidence            3456788999988887776

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=91.06  E-value=13  Score=36.91  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=45.9

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      -.|..+...+.+.+.+-=....        .|.+||+.+++.++++.-..       ..+.++.+.      .++...+|
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg--------~i~vwd~~~~~~~~~l~~h~-------~~V~~v~~~------~~~~~l~s  167 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDA--------TIKVWDYETGDFERTLKGHT-------DSVQDISFD------HSGKLLAS  167 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSS--------CEEEEETTTCCCCEEECCCS-------SCEEEEEEC------TTSSEEEE
T ss_pred             CcEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCcEEEEEeccC-------CcEEEEEEc------CCCCEEEE
Confidence            3566667777666554322222        68889999998887664322       234444442      12223445


Q ss_pred             eCCCCeEEEEEccCCcee
Q psy731          207 DSGHNHIVVYNYRTNDSH  224 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~  224 (494)
                      =+..+.|.+||+.++..-
T Consensus       168 gs~D~~i~iwd~~~~~~~  185 (410)
T 1vyh_C          168 CSADMTIKLWDFQGFECI  185 (410)
T ss_dssp             EETTSCCCEEETTSSCEE
T ss_pred             EeCCCeEEEEeCCCCcee
Confidence            456678999999877653

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=90.82  E-value=13  Score=36.45  Aligned_cols=30  Identities=7%  Similarity=0.042  Sum_probs=22.0

Q ss_pred             CCCeEEeeCCCCeEEEe--ccCCCeEEEEeCCC
Q psy731          390 QSGASSLDEETGVIFYA--LLVKSGVGCWNTFR  420 (494)
Q Consensus       390 qs~g~~~D~~~G~ly~~--~~~~~aI~~w~~~~  420 (494)
                      +...+++. .+|..+++  --..+.|..|+..+
T Consensus       305 ~v~~~~~s-~~~~~l~~~~g~~dg~i~v~~~~~  336 (401)
T 4aez_A          305 QVTSLIWS-PHSKEIMSTHGFPDNNLSIWSYSS  336 (401)
T ss_dssp             CEEEEEEC-SSSSEEEEEECTTTCEEEEEEEET
T ss_pred             cEEEEEEC-CCCCeEEEEeecCCCcEEEEecCC
Confidence            45677888 56766665  33788999999876

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.61  E-value=11  Score=35.23  Aligned_cols=198  Identities=8%  Similarity=0.097  Sum_probs=108.5

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ..|..+...+++++.+.=....        .|..||+.+++..+.+.-.       ...+..+...     .+..++..+
T Consensus        24 ~~v~~~~~s~~~~~l~s~~~dg--------~i~iw~~~~~~~~~~~~~h-------~~~v~~~~~~-----~~~~~l~s~   83 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASSSADK--------LIKIWGAYDGKFEKTISGH-------KLGISDVAWS-----SDSNLLVSA   83 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTS--------CEEEEETTTCCEEEEECCC-------SSCEEEEEEC-----TTSSEEEEE
T ss_pred             CcEEEEEECCCCCEEEEeeCCC--------eEEEEeCCCcccchhhccC-------CCceEEEEEc-----CCCCEEEEE
Confidence            3566777778777655422222        5888999999888765422       2234444442     123344333


Q ss_pred             eCCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          207 DSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                       +..+.|.+||+.+++.-+. ..+.                               .....+.+..     +..+++...
T Consensus        84 -~~d~~i~vwd~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~-----~~~~l~s~~  126 (312)
T 4ery_A           84 -SDDKTLKIWDVSSGKCLKTLKGHS-------------------------------NYVFCCNFNP-----QSNLIVSGS  126 (312)
T ss_dssp             -ETTSEEEEEETTTCCEEEEEECCS-------------------------------SCEEEEEECS-----SSSEEEEEE
T ss_pred             -CCCCEEEEEECCCCcEEEEEcCCC-------------------------------CCEEEEEEcC-----CCCEEEEEe
Confidence             4457899999998875433 1110                               1122222321     233433332


Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechh
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKV  364 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~  364 (494)
                       .+..|.+||+++++.-+.....                   ...+..++++|+    ++.|+.....+. ++|.+.+..
T Consensus       127 -~d~~i~iwd~~~~~~~~~~~~~-------------------~~~v~~~~~~~~----~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          127 -FDESVRIWDVKTGKCLKTLPAH-------------------SDPVSAVHFNRD----GSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             -TTSCEEEEETTTCCEEEEECCC-------------------SSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCC
T ss_pred             -CCCcEEEEECCCCEEEEEecCC-------------------CCcEEEEEEcCC----CCEEEEEeCCCcEEEEECCCCc
Confidence             3557889999887643322110                   123667888875    246665555543 555443211


Q ss_pred             hcCCCcCccccccceEEe-cccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          365 LQNRSLDFSRSNFDFKVM-GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~-G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .             ++.+ ...  ......++++ .+|..+++--..+.|..||..++
T Consensus       183 ~-------------~~~~~~~~--~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          183 C-------------LKTLIDDD--NPPVSFVKFS-PNGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             E-------------EEEECCSS--CCCEEEEEEC-TTSSEEEEEETTTEEEEEETTTT
T ss_pred             e-------------eeEEeccC--CCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCC
Confidence            1             1111 111  1234557888 67777777777889999999874

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.35  E-value=13  Score=35.67  Aligned_cols=201  Identities=13%  Similarity=0.124  Sum_probs=106.3

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      -.|..+...+++++.+-=....        .|..||+.+++.++.+....       +....+...     .+..++...
T Consensus        56 ~~v~~~~~s~d~~~l~s~s~Dg--------~v~iWd~~~~~~~~~~~~~~-------~~v~~~~~s-----~~~~~l~s~  115 (340)
T 1got_B           56 AKIYAMHWGTDSRLLLSASQDG--------KLIIWDSYTTNKVHAIPLRS-------SWVMTCAYA-----PSGNYVACG  115 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTT--------EEEEEETTTCCEEEEEECSS-------SCEEEEEEC-----TTSSEEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCC--------cEEEEECCCCCcceEeecCC-------ccEEEEEEC-----CCCCEEEEE
Confidence            3456666667776555322211        78889999998888776544       222333321     133444333


Q ss_pred             eCCCCeEEEEEccCCce-eEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          207 DSGHNHIVVYNYRTNDS-HIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~-~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                       +..+.+.+||+.++.. .++..                      ++     .........+....      +.. .++=
T Consensus       116 -~~d~~v~iw~~~~~~~~~~~~~----------------------~~-----~~h~~~v~~~~~~~------~~~-l~s~  160 (340)
T 1got_B          116 -GLDNICSIYNLKTREGNVRVSR----------------------EL-----AGHTGYLSCCRFLD------DNQ-IVTS  160 (340)
T ss_dssp             -ETTCEEEEEETTTCSBSCEEEE----------------------EE-----ECCSSCEEEEEEEE------TTE-EEEE
T ss_pred             -eCCCeEEEEECccCCCcceeEE----------------------Ee-----cCCCccEEEEEECC------CCc-EEEE
Confidence             3457789999887642 11100                      00     00001112222211      122 2333


Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechh
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKV  364 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~  364 (494)
                      ..+..|.+||+++++.-+....                   -...+..++++|++    +.|.-....+. ++|.+.+..
T Consensus       161 s~d~~i~~wd~~~~~~~~~~~~-------------------h~~~v~~~~~~~~~----~~l~sg~~d~~v~~wd~~~~~  217 (340)
T 1got_B          161 SGDTTCALWDIETGQQTTTFTG-------------------HTGDVMSLSLAPDT----RLFVSGACDASAKLWDVREGM  217 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC-------------------CSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTCS
T ss_pred             ECCCcEEEEECCCCcEEEEEcC-------------------CCCceEEEEECCCC----CEEEEEeCCCcEEEEECCCCe
Confidence            3467789999988764332110                   01236778898862    45554444443 566543321


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .            .....|..   .....+++. .+|.++++--....|..||.+.+
T Consensus       218 ~------------~~~~~~h~---~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          218 C------------RQTFTGHE---SDINAICFF-PNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             E------------EEEECCCS---SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTT
T ss_pred             e------------EEEEcCCc---CCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCC
Confidence            1            01112222   335577888 67888888788889999999863

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=90.29  E-value=17  Score=37.01  Aligned_cols=80  Identities=8%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             ceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCC---CCeEEEe
Q psy731          330 GIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEE---TGVIFYA  406 (494)
Q Consensus       330 Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~---~G~ly~~  406 (494)
                      .+-|+++.+.    ...||+.-=. ..++++..+-=...+      ...+..++..+......||++.+.   +|-||.+
T Consensus       181 q~EgcvvDd~----~g~Lyv~eEd-~GIw~~da~p~~~~~------~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS  249 (355)
T 3amr_A          181 QTEGMAADDE----YGRLYIAEED-EAIWKFSAEPDGGSN------GTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS  249 (355)
T ss_dssp             CEEEEEEETT----TTEEEEEETT-TEEEEEECSTTSCSC------CEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE
T ss_pred             CcceEEEcCC----CCeEEEeccc-ceEEEEeCCcCCCCC------ceEEEEecCCccccCcceEEEEecCCCCEEEEEE
Confidence            3667999764    4699996655 358888643211000      122333332222234678888522   3679999


Q ss_pred             ccCCCeEEEEeCCC
Q psy731          407 LLVKSGVGCWNTFR  420 (494)
Q Consensus       407 ~~~~~aI~~w~~~~  420 (494)
                      .-..++...++.+.
T Consensus       250 sQG~~s~~Vydr~~  263 (355)
T 3amr_A          250 SQGNSSYAIYDRQG  263 (355)
T ss_dssp             EGGGTEEEEEESST
T ss_pred             cCCCCEEEEEECCC
Confidence            99999999999864

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=90.21  E-value=12  Score=39.70  Aligned_cols=26  Identities=12%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEec
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~  306 (494)
                      +..||..+   ..|.++|+.+++..++..
T Consensus       126 ~~la~~~~---~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A          126 QQLIFIFE---NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             TCEEEEET---TEEEEESSSSSCCEEEEC
T ss_pred             CEEEEEEC---CeEEEEECCCCceEEEec
Confidence            56788876   579999999988877764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=90.11  E-value=15  Score=35.95  Aligned_cols=190  Identities=11%  Similarity=0.124  Sum_probs=99.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC-ceeEE-ecCccccC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN-DSHII-HHNYLHFD  234 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~-~~~rv-~~~~~~~d  234 (494)
                      .|..||+.+++.+..+....  ..........+.+     ...+....+|=+..+.|.+||++.. ...+. ..|     
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~--~~~h~~~v~~~~~-----~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h-----  248 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEF--PSGHTADVLSLSI-----NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH-----  248 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCS--SSSCCSCEEEEEE-----CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC-----
T ss_pred             cEEEEEcCCCcEEEEeeccc--CCCCccCeEEEEe-----ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc-----
Confidence            57789999999887664322  0011122222222     1224556667667788999998743 33222 111     


Q ss_pred             CCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCC
Q psy731          235 PLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  314 (494)
Q Consensus       235 p~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~  314 (494)
                                                ......+.+..     +..+ .++=..+..|.+||+++++.-+...........
T Consensus       249 --------------------------~~~v~~v~~~p-----~~~~-l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~  296 (380)
T 3iz6_a          249 --------------------------EGDINSVKFFP-----DGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN  296 (380)
T ss_dssp             --------------------------SSCCCEEEECT-----TSSE-EEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred             --------------------------CCCeEEEEEec-----CCCe-EEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence                                      01123333321     1222 333345677899999998766554321110000


Q ss_pred             CcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecc--cCCCCCC
Q psy731          315 FGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGS--RGTGSQS  391 (494)
Q Consensus       315 ~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~--~G~~~qs  391 (494)
                                  ....+..++++|++    +.|+-....+. ++|.+.+..             .+..++.  .|-....
T Consensus       297 ------------~~~~v~~~~~s~~g----~~l~~g~~dg~i~vwd~~~~~-------------~~~~~~~~~~~h~~~v  347 (380)
T 3iz6_a          297 ------------ELPIVTSVAFSISG----RLLFAGYSNGDCYVWDTLLAE-------------MVLNLGTLQNSHEGRI  347 (380)
T ss_dssp             ------------SSCSCSEEEECSSS----SEEEEECTTSCEEEEETTTCC-------------EEEEECCSCSSCCCCC
T ss_pred             ------------ccCceEEEEECCCC----CEEEEEECCCCEEEEECCCCc-------------eEEEEecccCCCCCce
Confidence                        01236678898863    56655544443 444332211             1111211  1112335


Q ss_pred             CeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          392 GASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       392 ~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..+++. .+|..+++--....|..|+..+
T Consensus       348 ~~l~~s-~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          348 SCLGLS-SDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CEEEEC-SSSSEEEEECTTSCEEEEECCS
T ss_pred             EEEEEC-CCCCEEEEeeCCCCEEEEecCC
Confidence            667888 6887777777888999999876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=89.94  E-value=6.7  Score=40.86  Aligned_cols=22  Identities=5%  Similarity=-0.071  Sum_probs=19.0

Q ss_pred             eeCCCCeEEEeccCCCeEEEEeC
Q psy731          396 LDEETGVIFYALLVKSGVGCWNT  418 (494)
Q Consensus       396 ~D~~~G~ly~~~~~~~aI~~w~~  418 (494)
                      .+ .+|.++++-.....+..|+.
T Consensus       253 ~s-pdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          253 YL-PDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EC-TTSCEEEEEEETTEEEEEET
T ss_pred             Ec-CCCcEEEEEEcCCcEEEEEE
Confidence            77 57788998888889999998

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=89.55  E-value=23  Score=37.23  Aligned_cols=29  Identities=10%  Similarity=0.076  Sum_probs=18.1

Q ss_pred             CeEEeeCCCCeEEEeccCCC--eEEEEeCCCC
Q psy731          392 GASSLDEETGVIFYALLVKS--GVGCWNTFRG  421 (494)
Q Consensus       392 ~g~~~D~~~G~ly~~~~~~~--aI~~w~~~~~  421 (494)
                      ...+.. .+|.+||.--...  .|..||..+|
T Consensus       245 ~~~~~s-pdg~l~~~~~~~~~~~l~~~~~~~~  275 (662)
T 3azo_A          245 AQAEWA-PDGSLIVATDRTGWWNLHRVDPATG  275 (662)
T ss_dssp             EEEEEC-TTSCEEEEECTTSSCEEEEECTTTC
T ss_pred             cceEEC-CCCeEEEEECCCCCeEEEEEECCCC
Confidence            345666 5666666544333  7999998653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=89.49  E-value=16  Score=35.45  Aligned_cols=125  Identities=10%  Similarity=0.211  Sum_probs=67.9

Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..+.+||+++++.-+....                   -...|..++.+|++    +.|.-....++ ++|.+.+.  
T Consensus       218 ~Dg~v~~wd~~~~~~~~~~~~-------------------h~~~v~~v~~~p~~----~~l~s~s~D~~v~lwd~~~~--  272 (354)
T 2pbi_B          218 CDKKAMVWDMRSGQCVQAFET-------------------HESDVNSVRYYPSG----DAFASGSDDATCRLYDLRAD--  272 (354)
T ss_dssp             TTSCEEEEETTTCCEEEEECC-------------------CSSCEEEEEECTTS----SEEEEEETTSCEEEEETTTT--
T ss_pred             CCCeEEEEECCCCcEEEEecC-------------------CCCCeEEEEEeCCC----CEEEEEeCCCeEEEEECCCC--
Confidence            456789999998765333211                   01237778888862    45555555444 56654331  


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                                 ..+..+...........+++. .+|.+.++--....|..||..+|..     +..+... .  .+...+
T Consensus       273 -----------~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~g~~d~~i~vwd~~~~~~-----~~~l~~h-~--~~v~~l  332 (354)
T 2pbi_B          273 -----------REVAIYSKESIIFGASSVDFS-LSGRLLFAGYNDYTINVWDVLKGSR-----VSILFGH-E--NRVSTL  332 (354)
T ss_dssp             -----------EEEEEECCTTCCSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSE-----EEEECCC-S--SCEEEE
T ss_pred             -----------cEEEEEcCCCcccceeEEEEe-CCCCEEEEEECCCcEEEEECCCCce-----EEEEECC-C--CcEEEE
Confidence                       111112111101112356677 6787777777888999999876422     2232211 1  245566


Q ss_pred             EEcCCceEEEE
Q psy731          446 RVDRTGVLWVL  456 (494)
Q Consensus       446 ~id~~g~Lwvl  456 (494)
                      .+.++|.+.++
T Consensus       333 ~~spdg~~l~s  343 (354)
T 2pbi_B          333 RVSPDGTAFCS  343 (354)
T ss_dssp             EECTTSSCEEE
T ss_pred             EECCCCCEEEE
Confidence            67677754443

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=88.56  E-value=18  Score=34.79  Aligned_cols=59  Identities=10%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv  226 (494)
                      .|..||+.+. .++.+.-..    .....+..+.+..     +..+++.+ +..+.|.+||++....+.+
T Consensus       142 ~i~iwd~~~~-~~~~~~~~~----~~~~~v~~~~~~~-----~~~~l~~~-~~d~~i~i~d~~~~~~~~~  200 (383)
T 3ei3_B          142 ATTLRDFSGS-VIQVFAKTD----SWDYWYCCVDVSV-----SRQMLATG-DSTGRLLLLGLDGHEIFKE  200 (383)
T ss_dssp             EEEEEETTSC-EEEEEECCC----CSSCCEEEEEEET-----TTTEEEEE-ETTSEEEEEETTSCEEEEE
T ss_pred             EEEEEECCCC-ceEEEeccC----CCCCCeEEEEECC-----CCCEEEEE-CCCCCEEEEECCCCEEEEe
Confidence            6788888864 344343222    1223344444431     34455444 3457899999965555444

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.18  E-value=10  Score=40.46  Aligned_cols=121  Identities=7%  Similarity=0.048  Sum_probs=72.2

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEEC-CCCcEEEEEEcCCCccccc--c--CCccceEEEeecCCCCCcEEEEeeCCCC
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDL-RQQMQIRFFQLKEKTDYTE--E--SKFSNMVVDVTSANCDNAFLYIADSGHN  211 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl-~t~~vi~~~~lp~~~~~~~--~--S~l~d~vVD~~~~~c~~~~vYItDs~~~  211 (494)
                      .++|++......        +|+++|+ .|++++-+++++......+  .  ..-..++++       ++.||+... .+
T Consensus        62 ~g~vyv~~~~~~--------~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~~~-dg  125 (571)
T 2ad6_A           62 GDMMYVHSAFPN--------NTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG-------AGQIVKKQA-NG  125 (571)
T ss_dssp             TTEEEEECSTTT--------CEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE-------TTEEEEECT-TS
T ss_pred             CCEEEEEeCCCC--------EEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEE-------CCEEEEEeC-CC
Confidence            567777754222        6999999 9999998888765210000  0  011245553       568999853 46


Q ss_pred             eEEEEEccCCc-eeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC---
Q psy731          212 HIVVYNYRTND-SHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG---  287 (494)
Q Consensus       212 ~iIVyd~~~~~-~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~---  287 (494)
                      .|+.+|.++|+ .|++.-...    .. .+                     ......+|.       +..+|+....   
T Consensus       126 ~l~alD~~tG~~~W~~~~~~~----~~-~~---------------------~~~~~P~v~-------~g~v~vg~~~~~~  172 (571)
T 2ad6_A          126 HLLALDAKTGKINWEVEVCDP----KV-GS---------------------TLTQAPFVA-------KDTVLMGCSGAEL  172 (571)
T ss_dssp             EEEEEETTTCCEEEEEECCCG----GG-TC---------------------BCCSCCEEE-------TTEEEEECBCGGG
T ss_pred             EEEEEECCCCCEEEEecCCCC----Cc-cc---------------------eeccCCEEE-------CCEEEEEecCCcc
Confidence            79999998887 577731100    00 00                     001122332       2457777543   


Q ss_pred             --CCeEEEEEcCCCc-EEEEec
Q psy731          288 --HNHIVVYNYRTND-SHIIHH  306 (494)
Q Consensus       288 --~~gliVydl~~~~-swrv~~  306 (494)
                        ...|..+|.++++ .|++..
T Consensus       173 ~~~g~v~a~D~~tG~~~W~~~~  194 (571)
T 2ad6_A          173 GVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TCCCEEEEEETTTCCEEEEEES
T ss_pred             CCCCEEEEEECCCCcEEEEEcc
Confidence              5679999998765 798864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=88.14  E-value=22  Score=38.27  Aligned_cols=52  Identities=10%  Similarity=0.045  Sum_probs=33.3

Q ss_pred             CcEEEEecCCCC---eEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC
Q psy731          278 DAFLYIADSGHN---HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA  353 (494)
Q Consensus       278 ~~~~YI~D~~~~---gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls  353 (494)
                      +..||..+..+.   .|.|+|+++++..+.....                    ..+.+++.|||    ++.|||....
T Consensus       137 ~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~--------------------~~~~~~~wspD----g~~l~~~~~~  191 (710)
T 2xdw_A          137 EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--------------------VKFSCMAWTHD----GKGMFYNAYP  191 (710)
T ss_dssp             SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--------------------ECSCCEEECTT----SSEEEEEECC
T ss_pred             CEEEEEEcCCCCceEEEEEEECCCCCCCcccccC--------------------cccceEEEEeC----CCEEEEEEEC
Confidence            567788775543   7999999988764432110                    01345888887    3788886654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=87.93  E-value=32  Score=36.93  Aligned_cols=29  Identities=10%  Similarity=-0.028  Sum_probs=22.7

Q ss_pred             CCCcEEEEeeCCCC---eEEEEEccCCceeEE
Q psy731          198 CDNAFLYIADSGHN---HIVVYNYRTNDSHII  226 (494)
Q Consensus       198 c~~~~vYItDs~~~---~iIVyd~~~~~~~rv  226 (494)
                      +++..+|.+|.++.   .|.|+|+++|...+.
T Consensus       135 Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~  166 (710)
T 2xdw_A          135 DGEYFAYGLSASGSDWVTIKFMKVDGAKELPD  166 (710)
T ss_dssp             TSSEEEEEEEETTCSCEEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEcCCCCceEEEEEEECCCCCCCcc
Confidence            46677888876554   899999999988765

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=87.83  E-value=20  Score=34.39  Aligned_cols=173  Identities=12%  Similarity=0.160  Sum_probs=91.9

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      .|..||+.+++.++++.-.       ...+..+.+.      .++...++=+..+.|.+||+.++...+. ..|      
T Consensus       165 ~i~~wd~~~~~~~~~~~~h-------~~~v~~~~~~------~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h------  225 (340)
T 1got_B          165 TCALWDIETGQQTTTFTGH-------TGDVMSLSLA------PDTRLFVSGACDASAKLWDVREGMCRQTFTGH------  225 (340)
T ss_dssp             CEEEEETTTTEEEEEECCC-------SSCEEEEEEC------TTSSEEEEEETTSCEEEEETTTCSEEEEECCC------
T ss_pred             cEEEEECCCCcEEEEEcCC-------CCceEEEEEC------CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------
Confidence            5888999999988766422       2233334332      1233455656678899999998875443 110      


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEE-ecCCcccCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDPL  314 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv-~~~~~~~dP~  314 (494)
                                               ......+.+..     +..++. +-..+..|.+||+++++.-.. .|..      
T Consensus       226 -------------------------~~~v~~v~~~p-----~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~------  268 (340)
T 1got_B          226 -------------------------ESDINAICFFP-----NGNAFA-TGSDDATCRLFDLRADQELMTYSHDN------  268 (340)
T ss_dssp             -------------------------SSCEEEEEECT-----TSSEEE-EEETTSCEEEEETTTTEEEEEECCTT------
T ss_pred             -------------------------cCCEEEEEEcC-----CCCEEE-EEcCCCcEEEEECCCCcEEEEEccCC------
Confidence                                     11233344432     123332 323456788999987764322 2211      


Q ss_pred             CcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCe
Q psy731          315 FGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGA  393 (494)
Q Consensus       315 ~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g  393 (494)
                                  ...++..++++|++    +.|.-..-.+. ++|.+.+...            .-...|..   .....
T Consensus       269 ------------~~~~v~~~~~s~~g----~~l~~g~~d~~i~vwd~~~~~~------------~~~~~~h~---~~v~~  317 (340)
T 1got_B          269 ------------IICGITSVSFSKSG----RLLLAGYDDFNCNVWDALKADR------------AGVLAGHD---NRVSC  317 (340)
T ss_dssp             ------------CCSCEEEEEECTTS----SEEEEEETTSEEEEEETTTCCE------------EEEEECCS---SCEEE
T ss_pred             ------------cccceEEEEECCCC----CEEEEECCCCeEEEEEcccCcE------------eeEeecCC---CcEEE
Confidence                        01347778898863    45555544443 4444322110            01122333   22445


Q ss_pred             EEeeCCCCeEEEeccCCCeEEEEe
Q psy731          394 SSLDEETGVIFYALLVKSGVGCWN  417 (494)
Q Consensus       394 ~~~D~~~G~ly~~~~~~~aI~~w~  417 (494)
                      +++. .+|..+.+--....|..||
T Consensus       318 ~~~s-~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          318 LGVT-DDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEC-TTSSCEEEEETTSCEEEEC
T ss_pred             EEEc-CCCCEEEEEcCCccEEecC
Confidence            6676 5676555555666777775

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=87.69  E-value=19  Score=33.94  Aligned_cols=201  Identities=12%  Similarity=0.147  Sum_probs=104.1

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .+..||+.+++.++.+...+       .....+....     +..++ ++=
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg--------~v~lWd~~~~~~~~~~~~~~-------~~v~~~~~~~-----~~~~l-~s~   73 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSG--------RVELWNYETQVEVRSIQVTE-------TPVRAGKFIA-----RKNWI-IVG   73 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTS--------EEEEEETTTTEEEEEEECCS-------SCEEEEEEEG-----GGTEE-EEE
T ss_pred             ceEEEEECCCCCEEEEEcCCC--------cEEEEECCCCceeEEeeccC-------CcEEEEEEeC-----CCCEE-EEE
Confidence            366667777776555322222        78899999999988877544       1222333221     22333 333


Q ss_pred             CCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      +..+.|.|||+.+++.-+. ..|.                               .....+.+..     ++.++. +=.
T Consensus        74 s~d~~i~vwd~~~~~~~~~~~~h~-------------------------------~~v~~~~~~~-----~~~~l~-sgs  116 (304)
T 2ynn_A           74 SDDFRIRVFNYNTGEKVVDFEAHP-------------------------------DYIRSIAVHP-----TKPYVL-SGS  116 (304)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCS-------------------------------SCEEEEEECS-----SSSEEE-EEE
T ss_pred             CCCCEEEEEECCCCcEEEEEeCCC-------------------------------CcEEEEEEcC-----CCCEEE-EEC
Confidence            4567899999998876443 1111                               1133344432     223333 223


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||++++..-...   +           .|.    ...+..++++|.+   ...|.-....++ ++|.+.+.  
T Consensus       117 ~D~~v~lWd~~~~~~~~~~---~-----------~~h----~~~v~~v~~~p~~---~~~l~sgs~D~~v~iwd~~~~--  173 (304)
T 2ynn_A          117 DDLTVKLWNWENNWALEQT---F-----------EGH----EHFVMCVAFNPKD---PSTFASGCLDRTVKVWSLGQS--  173 (304)
T ss_dssp             TTSCEEEEEGGGTTEEEEE---E-----------CCC----CSCEEEEEECTTC---TTEEEEEETTSEEEEEETTCS--
T ss_pred             CCCeEEEEECCCCcchhhh---h-----------ccc----CCcEEEEEECCCC---CCEEEEEeCCCeEEEEECCCC--
Confidence            4667889999876432110   0           000    1236678888742   245555555443 55554221  


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeC-CCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDE-ETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~-~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                         .       ..++.....  ......+.+.+ .+|.+.++--....|..||.+++
T Consensus       174 ---~-------~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~  218 (304)
T 2ynn_A          174 ---T-------PNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (304)
T ss_dssp             ---S-------CSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT
T ss_pred             ---C-------ccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC
Confidence               1       111111111  01112233332 35666677777889999999874

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.41  E-value=8.3  Score=37.00  Aligned_cols=65  Identities=12%  Similarity=0.170  Sum_probs=38.7

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC-CCCeEEEEEccCCceeEE
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS-GHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs-~~~~iIVyd~~~~~~~rv  226 (494)
                      +....+|..+++.++++.....  .....++.++++.    .+++..+|+++. +...|.++|+.++...++
T Consensus        10 ~~~~~~d~~~g~~~~~l~~~~~--~~~~~~~~~~~~S----pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l   75 (396)
T 3c5m_A           10 NFETFVDSDTQVKVTRLTPTDI--ICHRNYFYQKCFT----QDGKKLLFAGDFDGNRNYYLLNLETQQAVQL   75 (396)
T ss_dssp             CEEEEECTTTCCEEEECSCTTS--CEECCCTTSCCBC----TTSCEEEEEECTTSSCEEEEEETTTTEEEEC
T ss_pred             hhheeecCCCCcceEEEecCCC--CccceeeecCcCC----CCCCEEEEEEecCCCceEEEEECCCCcEEEe
Confidence            4556668888877665543320  0011123444432    234556788776 445799999999988777

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.25  E-value=19  Score=33.61  Aligned_cols=110  Identities=9%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-c
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-T  356 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~  356 (494)
                      ..+++... .+..|.+||+++++.-....                    ....+..++++|...+ ++.|+.....+. .
T Consensus       180 ~~~l~~~~-~d~~i~i~d~~~~~~~~~~~--------------------~~~~v~~~~~~~~~~~-~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          180 ERVVCAGY-DNGDIKLFDLRNMALRWETN--------------------IKNGVCSLEFDRKDIS-MNKLVATSLEGKFH  237 (357)
T ss_dssp             CCEEEEEE-TTSEEEEEETTTTEEEEEEE--------------------CSSCEEEEEESCSSSS-CCEEEEEESTTEEE
T ss_pred             CCEEEEEc-cCCeEEEEECccCceeeecC--------------------CCCceEEEEcCCCCCC-CCEEEEECCCCeEE
Confidence            34444443 35678899998876422211                    1234777899883111 257777766654 6


Q ss_pred             eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCe-EEEeccCCCeEEEEeCCC
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGV-IFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~-ly~~~~~~~aI~~w~~~~  420 (494)
                      +|.+.+......      . ......+..   .....+++. .+|. ++++--....|..||.+.
T Consensus       238 i~d~~~~~~~~~------~-~~~~~~~~~---~~v~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          238 VFDMRTQHPTKG------F-ASVSEKAHK---STVWQVRHL-PQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EEEEEEEETTTE------E-EEEEEECCS---SCEEEEEEE-TTEEEEEEEEETTSEEEEEEEEC
T ss_pred             EEeCcCCCcccc------e-eeeccCCCc---CCEEEEEEC-CCCCcEEEEEeCCCcEEEeecCC
Confidence            677665322110      0 000111322   345667888 5676 777777788999999875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=87.04  E-value=28  Score=35.37  Aligned_cols=67  Identities=16%  Similarity=0.229  Sum_probs=37.4

Q ss_pred             ceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEecc
Q psy731          330 GIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALL  408 (494)
Q Consensus       330 Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~  408 (494)
                      .|..|++||++    +.|.-....+. ++|..+.+.+             -...|..   ....++++. .+|..+++--
T Consensus       510 ~v~~l~~s~dg----~~l~s~~~dg~v~lwd~~~~~~-------------~~~~~h~---~~v~~~~fs-~dg~~l~s~~  568 (577)
T 2ymu_A          510 SVRGVAFSPDG----QTIASASDDKTVKLWNRNGQLL-------------QTLTGHS---SSVWGVAFS-PDGQTIASAS  568 (577)
T ss_dssp             CEEEEEECTTS----SCEEEEETTSEEEEECTTSCEE-------------EEEECCS---SCEEEEEEC-TTSSCEEEEE
T ss_pred             CEEEEEEcCCC----CEEEEEECcCEEEEEeCCCCEE-------------EEEcCCC---CCEEEEEEc-CCCCEEEEEe
Confidence            37779999873    56665544433 4554221111             1122332   234567777 5776666655


Q ss_pred             CCCeEEEEe
Q psy731          409 VKSGVGCWN  417 (494)
Q Consensus       409 ~~~aI~~w~  417 (494)
                      ....|..||
T Consensus       569 ~D~~i~~Wd  577 (577)
T 2ymu_A          569 SDKTVKLWN  577 (577)
T ss_dssp             TTSCEEEEC
T ss_pred             CCCEEEEeC
Confidence            667788886

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=86.72  E-value=34  Score=35.96  Aligned_cols=71  Identities=10%  Similarity=0.056  Sum_probs=44.0

Q ss_pred             eeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC
Q psy731          331 IHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV  409 (494)
Q Consensus       331 i~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~  409 (494)
                      +..+++||+    ++.|.-..-.++ ++|.+.+..++           .++..+..   .....+++. .+|.+..+--.
T Consensus       451 v~~va~spd----g~~lasgs~D~~v~lwd~~~~~~~-----------~~~~~~h~---~~v~~v~fs-pdg~~las~s~  511 (611)
T 1nr0_A          451 SSCVALSND----KQFVAVGGQDSKVHVYKLSGASVS-----------EVKTIVHP---AEITSVAFS-NNGAFLVATDQ  511 (611)
T ss_dssp             EEEEEECTT----SCEEEEEETTSEEEEEEEETTEEE-----------EEEEEECS---SCEEEEEEC-TTSSEEEEEET
T ss_pred             ceEEEEeCC----CCEEEEeCCCCeEEEEEccCCcee-----------eeeccCCC---CceEEEEEC-CCCCEEEEEcC
Confidence            566777776    256666555554 66666543221           11222332   335678888 68877777778


Q ss_pred             CCeEEEEeCCC
Q psy731          410 KSGVGCWNTFR  420 (494)
Q Consensus       410 ~~aI~~w~~~~  420 (494)
                      ...|..|+..+
T Consensus       512 d~~v~~w~~~~  522 (611)
T 1nr0_A          512 SRKVIPYSVAN  522 (611)
T ss_dssp             TSCEEEEEGGG
T ss_pred             CCCEEEEEcCC
Confidence            88899999875

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.61  E-value=21  Score=33.32  Aligned_cols=211  Identities=11%  Similarity=0.118  Sum_probs=102.6

Q ss_pred             EEEEEECCCCc----EEEEEEcCCCccccccCCccceEEEeecCCCCCc-EEEEeeCCCCeEEEEEc-cCCceeEEec--
Q psy731          157 SVQVYDLRQQM----QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNA-FLYIADSGHNHIVVYNY-RTNDSHIIHH--  228 (494)
Q Consensus       157 klv~~dl~t~~----vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~-~vYItDs~~~~iIVyd~-~~~~~~rv~~--  228 (494)
                      .|..||+.+++    +...+.        ....+..+.+..     +.. +++.+. ..+.|.+||+ .++....+..  
T Consensus        34 ~v~iw~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~-----~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~   99 (342)
T 1yfq_A           34 SLTVYKFDIQAKNVDLLQSLR--------YKHPLLCCNFID-----NTDLQIYVGT-VQGEILKVDLIGSPSFQALTNNE   99 (342)
T ss_dssp             EEEEEEEETTTTEEEEEEEEE--------CSSCEEEEEEEE-----SSSEEEEEEE-TTSCEEEECSSSSSSEEECBSCC
T ss_pred             eEEEEEeCCCCccccceeeee--------cCCceEEEEECC-----CCCcEEEEEc-CCCeEEEEEeccCCceEeccccC
Confidence            56677776665    333221        223344455432     345 555554 4568999999 9888877743  


Q ss_pred             C-----ccccCCCCCcccc-CCccce--eeeecc---------cc---cccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          229 N-----YLHFDPLFGDFTI-GGEYSE--FFQLKE---------KT---DYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       229 ~-----~~~~dp~~~~f~i-~g~~~~--~f~l~~---------~~---~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      +     .....|  +.+-+ ++..+.  +|.+..         ..   ..........+.+.      .+. +++. ..+
T Consensus       100 ~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~-l~~~-~~d  169 (342)
T 1yfq_A          100 ANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTN------SSR-LIVG-MNN  169 (342)
T ss_dssp             CCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEEC------SSE-EEEE-EST
T ss_pred             CCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEec------CCc-EEEE-eCC
Confidence            2     233445  33333 333333  222221         11   01111222333332      122 3333 345


Q ss_pred             CeEEEEEcCC-CcE--EEEecCCcccCCCCcceEEcCEEeeeecceeeeeecc-CCCCCceeEEEeeCCCc-ceEeeech
Q psy731          289 NHIVVYNYRT-NDS--HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSP-LTRDNFRVMYFHPLAST-TEFAVTTK  363 (494)
Q Consensus       289 ~gliVydl~~-~~s--wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp-~~~~g~r~LYf~plss~-~ly~V~T~  363 (494)
                      ..|.+||+++ ...  .+....                   ....+..|+++| +    ++.++.....+. ++|.+.+.
T Consensus       170 ~~i~i~d~~~~~~~~~~~~~~~-------------------~~~~i~~i~~~~~~----~~~l~~~~~dg~i~i~~~~~~  226 (342)
T 1yfq_A          170 SQVQWFRLPLCEDDNGTIEESG-------------------LKYQIRDVALLPKE----QEGYACSSIDGRVAVEFFDDQ  226 (342)
T ss_dssp             TEEEEEESSCCTTCCCEEEECS-------------------CSSCEEEEEECSGG----GCEEEEEETTSEEEEEECCTT
T ss_pred             CeEEEEECCccccccceeeecC-------------------CCCceeEEEECCCC----CCEEEEEecCCcEEEEEEcCC
Confidence            6789999987 432  111110                   112366788887 6    256666665553 44444332


Q ss_pred             hhcCCCcCccccccceEEeccc------CCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          364 VLQNRSLDFSRSNFDFKVMGSR------GTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       364 ~L~~~~~~~~~~~~~v~~~G~~------G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      -  + ..   .........+..      +.......++++ .+|.++++--....|..||..++
T Consensus       227 ~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~~~~dg~i~vwd~~~~  283 (342)
T 1yfq_A          227 G--D-DY---NSSKRFAFRCHRLNLKDTNLAYPVNSIEFS-PRHKFLYTAGSDGIISCWNLQTR  283 (342)
T ss_dssp             C--C-ST---TCTTCEEEECCCCCTTCCSSCCCEEEEEEC-TTTCCEEEEETTSCEEEEETTTT
T ss_pred             C--c-cc---ccccceeeecccccccccccceeEEEEEEc-CCCCEEEEecCCceEEEEcCccH
Confidence            0  0 00   000111111211      001234567888 56766666667788999999874

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=86.35  E-value=41  Score=36.48  Aligned_cols=73  Identities=7%  Similarity=0.013  Sum_probs=47.4

Q ss_pred             CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCcccccc---C-CccceEEEeecCCCCCcEEEEeeCCCCe
Q psy731          137 CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEE---S-KFSNMVVDVTSANCDNAFLYIADSGHNH  212 (494)
Q Consensus       137 ~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~---S-~l~d~vVD~~~~~c~~~~vYItDs~~~~  212 (494)
                      .++|++....         -.|+++|++|++++-+++++........   + .-..++++       ++.||+.. ..+.
T Consensus        66 ~g~vyv~~~~---------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~v~~-~dg~  128 (668)
T 1kv9_A           66 DGVIYTSMSW---------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW-------GDKVYVGT-LDGR  128 (668)
T ss_dssp             TTEEEEEEGG---------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE-------BTEEEEEC-TTSE
T ss_pred             CCEEEEECCC---------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEE-------CCEEEEEc-CCCE
Confidence            5566666432         2799999999999988887652110000   0 01234553       56789985 3578


Q ss_pred             EEEEEccCCc-eeEE
Q psy731          213 IVVYNYRTND-SHII  226 (494)
Q Consensus       213 iIVyd~~~~~-~~rv  226 (494)
                      |+.+|.++|+ .|++
T Consensus       129 l~alD~~tG~~~W~~  143 (668)
T 1kv9_A          129 LIALDAKTGKAIWSQ  143 (668)
T ss_dssp             EEEEETTTCCEEEEE
T ss_pred             EEEEECCCCCEeeee
Confidence            9999998887 5777

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=85.85  E-value=15  Score=35.06  Aligned_cols=74  Identities=14%  Similarity=-0.044  Sum_probs=40.3

Q ss_pred             cceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEec
Q psy731          329 TGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYAL  407 (494)
Q Consensus       329 ~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~  407 (494)
                      ..+..++++|+    ++.|+.....+. ++|.+.+.....      ....  ...+..   .....+++. .+|.+..+-
T Consensus       206 ~~v~~~~~sp~----~~~l~~~~~d~~i~iwd~~~~~~~~------~~~~--~~~~~~---~~v~~~~~s-~~~~~l~~~  269 (377)
T 3dwl_C          206 GWVHAVGFSPS----GNALAYAGHDSSVTIAYPSAPEQPP------RALI--TVKLSQ---LPLRSLLWA-NESAIVAAG  269 (377)
T ss_dssp             SSEEEEEECTT----SSCEEEEETTTEEC-CEECSTTSCE------EECC--CEECSS---SCEEEEEEE-ETTEEEEEE
T ss_pred             ceEEEEEECCC----CCEEEEEeCCCcEEEEECCCCCCcc------eeeE--eecCCC---CceEEEEEc-CCCCEEEEE
Confidence            45888999987    357777666554 666665532200      0001  111222   224567777 567655554


Q ss_pred             cCCCeEEEEeCC
Q psy731          408 LVKSGVGCWNTF  419 (494)
Q Consensus       408 ~~~~aI~~w~~~  419 (494)
                       ..+.+..|+..
T Consensus       270 -~~~~~~~~~~~  280 (377)
T 3dwl_C          270 -YNYSPILLQGN  280 (377)
T ss_dssp             -SSSSEEEECCC
T ss_pred             -cCCcEEEEEeC
Confidence             45566677765

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=85.78  E-value=39  Score=35.71  Aligned_cols=87  Identities=8%  Similarity=0.035  Sum_probs=52.6

Q ss_pred             EeeEEEcCCCeEEEEeCCCCC-CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDPCDRLWALDSGVVE-GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~-~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      |..+.+.++++..++-..... ........|..||+.+++. +++.-..    ........+++    ..+++..||+++
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~----~~~~~~~~~~~----SPdG~~la~~~~  133 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPE----VSNAKLQYAGW----GPKGQQLIFIFE  133 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTT----CCSCCCSBCCB----CSSTTCEEEEET
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCc----cccccccccEE----CCCCCEEEEEEC
Confidence            566777778876555332221 0112235899999999886 2222111    11122334443    234677888887


Q ss_pred             CCCCeEEEEEccCCceeEEe
Q psy731          208 SGHNHIVVYNYRTNDSHIIH  227 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~  227 (494)
                         +.|.++|+.++...++.
T Consensus       134 ---~~i~~~~~~~g~~~~~~  150 (723)
T 1xfd_A          134 ---NNIYYCAHVGKQAIRVV  150 (723)
T ss_dssp             ---TEEEEESSSSSCCEEEE
T ss_pred             ---CeEEEEECCCCceEEEe
Confidence               68999999999998884

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=85.67  E-value=38  Score=35.49  Aligned_cols=27  Identities=7%  Similarity=0.028  Sum_probs=18.1

Q ss_pred             CeEEeeCCCC-eEEEeccCC-------CeEEEEeCC
Q psy731          392 GASSLDEETG-VIFYALLVK-------SGVGCWNTF  419 (494)
Q Consensus       392 ~g~~~D~~~G-~ly~~~~~~-------~aI~~w~~~  419 (494)
                      .+.+.. .+| .|+++....       ..|..||.+
T Consensus       191 ~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~  225 (662)
T 3azo_A          191 TGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVT  225 (662)
T ss_dssp             CCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred             cCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEEC
Confidence            345677 455 577666443       579999987

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=85.51  E-value=11  Score=40.30  Aligned_cols=26  Identities=15%  Similarity=0.239  Sum_probs=19.6

Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEec
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~  306 (494)
                      +..||..|   ..|.++|+.+++..++..
T Consensus       122 ~~la~~~~---~~i~~~~~~~g~~~~l~~  147 (719)
T 1z68_A          122 SKLAYVYQ---NNIYLKQRPGDPPFQITF  147 (719)
T ss_dssp             TCEEEEET---TEEEEESSTTSCCEECCC
T ss_pred             CEEEEEEC---CeEEEEeCCCCCcEEEec
Confidence            46777764   589999999988777653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=85.46  E-value=16  Score=39.05  Aligned_cols=15  Identities=7%  Similarity=0.410  Sum_probs=13.7

Q ss_pred             eEEEEEccCCceeEE
Q psy731          212 HIVVYNYRTNDSHII  226 (494)
Q Consensus       212 ~iIVyd~~~~~~~rv  226 (494)
                      .|.+||+.+++..++
T Consensus        65 ~i~~~d~~~g~~~~~   79 (741)
T 2ecf_A           65 DLWSYDIGSGQTRLL   79 (741)
T ss_dssp             EEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCceeEc
Confidence            799999999998887

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=85.46  E-value=39  Score=35.48  Aligned_cols=110  Identities=11%  Similarity=0.103  Sum_probs=59.2

Q ss_pred             EEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceE
Q psy731          280 FLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEF  358 (494)
Q Consensus       280 ~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly  358 (494)
                      +..++-..+..+.+||..+.+.-+..               .|    -...|..++.+|++    +.|.-...-++ ++|
T Consensus       161 ~~l~s~s~D~~v~lwd~~~~~~~~~l---------------~~----H~~~V~~v~fspdg----~~las~s~D~~i~lw  217 (611)
T 1nr0_A          161 FRIISGSDDNTVAIFEGPPFKFKSTF---------------GE----HTKFVHSVRYNPDG----SLFASTGGDGTIVLY  217 (611)
T ss_dssp             CEEEEEETTSCEEEEETTTBEEEEEE---------------CC----CSSCEEEEEECTTS----SEEEEEETTSCEEEE
T ss_pred             eEEEEEeCCCeEEEEECCCCeEeeee---------------cc----ccCceEEEEECCCC----CEEEEEECCCcEEEE
Confidence            33444445677889987765432211               01    01347788998863    45554444443 555


Q ss_pred             eeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          359 AVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       359 ~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .+.+..... .+.    ....+..|..   ....++++. .+|.++.+--....|..||..++
T Consensus       218 d~~~g~~~~-~~~----~~~~~~~~h~---~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          218 NGVDGTKTG-VFE----DDSLKNVAHS---GSVFGLTWS-PDGTKIASASADKTIKIWNVATL  271 (611)
T ss_dssp             ETTTCCEEE-ECB----CTTSSSCSSS---SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT
T ss_pred             ECCCCcEee-eec----cccccccccC---CCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCC
Confidence            543321100 000    0001111332   335567888 68877777778889999999864

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=85.42  E-value=24  Score=32.98  Aligned_cols=65  Identities=20%  Similarity=0.202  Sum_probs=35.1

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCC-CcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCD-NAFLYIADSGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~-~~~vYItDs~~~~iIVyd~~~~~~~rv  226 (494)
                      .|..||+.+++.++.+.--.  .......+..+....  .... +.+++.+ +..+.|.|||+.+++.-+.
T Consensus        45 ~v~vw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~  110 (366)
T 3k26_A           45 RVTLYECHSQGEIRLLQSYV--DADADENFYTCAWTY--DSNTSHPLLAVA-GSRGIIRIINPITMQCIKH  110 (366)
T ss_dssp             EEEEEEECGGGCEEEEEEEE--CSCTTCCEEEEEEEE--CTTTCCEEEEEE-ETTCEEEEECTTTCCEEEE
T ss_pred             EEEEEEcCCCcEEEeeeecc--ccCCCCcEEEEEecc--CCCCCCCEEEEe-cCCCEEEEEEchhceEeee
Confidence            68888888877665544211  001223344444432  1111 3344444 3456899999998876444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=85.19  E-value=27  Score=33.38  Aligned_cols=31  Identities=10%  Similarity=0.137  Sum_probs=23.8

Q ss_pred             CCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          390 QSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       390 qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ....+++. .+|.++++--....|..||..++
T Consensus       293 ~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~  323 (397)
T 1sq9_A          293 WVMSLSFN-DSGETLCSAGWDGKLRFWDVKTK  323 (397)
T ss_dssp             CEEEEEEC-SSSSEEEEEETTSEEEEEETTTT
T ss_pred             cEEEEEEC-CCCCEEEEEeCCCeEEEEEcCCC
Confidence            34567888 57777777778889999999874

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=85.14  E-value=35  Score=34.66  Aligned_cols=70  Identities=16%  Similarity=0.202  Sum_probs=41.1

Q ss_pred             ceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEecc
Q psy731          330 GIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALL  408 (494)
Q Consensus       330 Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~  408 (494)
                      .+.+|+++|++    +.|......+. ++|....+.+             -+..|..   .....+++. .+|.+..+--
T Consensus       428 ~v~~~~~s~d~----~~l~~~~~d~~v~~w~~~~~~~-------------~~~~~~~---~~v~~~~~s-pd~~~las~~  486 (577)
T 2ymu_A          428 SVWGVAFSPDD----QTIASASDDKTVKLWNRNGQLL-------------QTLTGHS---SSVRGVAFS-PDGQTIASAS  486 (577)
T ss_dssp             CEEEEEECTTS----SEEEEEETTSEEEEEETTSCEE-------------EEEECCS---SCEEEEEEC-TTSCEEEEEE
T ss_pred             CeEEEEECCCC----CEEEEEcCCCEEEEEECCCCEE-------------EEEcCCC---CCEEEEEEc-CCCCEEEEEe
Confidence            36678999863    55655544432 4443222111             1122332   334567888 6787777777


Q ss_pred             CCCeEEEEeCCC
Q psy731          409 VKSGVGCWNTFR  420 (494)
Q Consensus       409 ~~~aI~~w~~~~  420 (494)
                      ....|..||.++
T Consensus       487 ~d~~i~iw~~~~  498 (577)
T 2ymu_A          487 DDKTVKLWNRNG  498 (577)
T ss_dssp             TTSEEEEEETTS
T ss_pred             CCCEEEEEcCCC
Confidence            788899999766

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=84.64  E-value=27  Score=32.84  Aligned_cols=180  Identities=13%  Similarity=0.161  Sum_probs=91.8

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeE-E-ecCccccC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHI-I-HHNYLHFD  234 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~r-v-~~~~~~~d  234 (494)
                      .|..||+.+++.++.+.-..       ..+..+.+.     .++.++ +|=+..+.|.+||+.++..-. . ..|     
T Consensus        78 ~i~vwd~~~~~~~~~~~~h~-------~~v~~~~~~-----~~~~~l-~sgs~D~~v~lWd~~~~~~~~~~~~~h-----  139 (304)
T 2ynn_A           78 RIRVFNYNTGEKVVDFEAHP-------DYIRSIAVH-----PTKPYV-LSGSDDLTVKLWNWENNWALEQTFEGH-----  139 (304)
T ss_dssp             EEEEEETTTCCEEEEEECCS-------SCEEEEEEC-----SSSSEE-EEEETTSCEEEEEGGGTTEEEEEECCC-----
T ss_pred             EEEEEECCCCcEEEEEeCCC-------CcEEEEEEc-----CCCCEE-EEECCCCeEEEEECCCCcchhhhhccc-----
Confidence            68888999998887765322       334444442     123333 454566789999998874321 1 110     


Q ss_pred             CCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCC
Q psy731          235 PLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  314 (494)
Q Consensus       235 p~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~  314 (494)
                                                ......+.+..     .+....++=..+..|.+||+.+...-...+.       
T Consensus       140 --------------------------~~~v~~v~~~p-----~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~-------  181 (304)
T 2ynn_A          140 --------------------------EHFVMCVAFNP-----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-------  181 (304)
T ss_dssp             --------------------------CSCEEEEEECT-----TCTTEEEEEETTSEEEEEETTCSSCSEEEEC-------
T ss_pred             --------------------------CCcEEEEEECC-----CCCCEEEEEeCCCeEEEEECCCCCccceecc-------
Confidence                                      11122333321     1111223333456788999876542111000       


Q ss_pred             CcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCe
Q psy731          315 FGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGA  393 (494)
Q Consensus       315 ~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g  393 (494)
                             +    ...++..++.+|.. + .+.|.-....++ ++|.+.+..+            ..+..|..   .....
T Consensus       182 -------~----~~~~v~~~~~~~~~-~-~~~l~s~s~D~~i~iWd~~~~~~------------~~~~~~h~---~~v~~  233 (304)
T 2ynn_A          182 -------G----QERGVNYVDYYPLP-D-KPYMITASDDLTIKIWDYQTKSC------------VATLEGHM---SNVSF  233 (304)
T ss_dssp             -------C----CTTCEEEEEECCST-T-CCEEEEEETTSEEEEEETTTTEE------------EEEEECCS---SCEEE
T ss_pred             -------C----CcCcEEEEEEEEcC-C-CCEEEEEcCCCeEEEEeCCCCcc------------ceeeCCCC---CCEEE
Confidence                   0    01234456665531 1 234444444333 5554433211            11122333   23455


Q ss_pred             EEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          394 SSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       394 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      +++. .+|.++++--....|..||..++
T Consensus       234 ~~~~-p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          234 AVFH-PTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEC-SSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEC-CCCCEEEEEcCCCeEEEEECCCC
Confidence            6777 57777777778889999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=84.34  E-value=29  Score=33.06  Aligned_cols=197  Identities=16%  Similarity=0.192  Sum_probs=102.2

Q ss_pred             cCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEE
Q psy731          135 DPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIV  214 (494)
Q Consensus       135 D~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iI  214 (494)
                      ..++.+-+.|...         ++..||++++++++.+.++.      ...+..+.+.    ...++...+|=+..+.|.
T Consensus        92 s~D~~i~~w~~~~---------~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~----~~~~~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           92 GPCNRLLLLYPGN---------QITILDSKTNKVLREIEVDS------ANEIIYMYGH----NEVNTEYFIWADNRGTIG  152 (343)
T ss_dssp             CSTTEEEEEETTT---------EEEEEETTTCCEEEEEECCC------SSCEEEEECC----C---CCEEEEEETTCCEE
T ss_pred             cCCCeEEEEEccC---------ceEEeecCCcceeEEeecCC------CCCEEEEEcC----CCCCCCEEEEEeCCCcEE
Confidence            3456666666554         57788999999888777654      1122333321    101222334444567899


Q ss_pred             EEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEE
Q psy731          215 VYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVY  294 (494)
Q Consensus       215 Vyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVy  294 (494)
                      +||+.+++..++....                             ....+..+.+..     +..++... ..+..|.+|
T Consensus       153 ~wd~~~~~~~~~~~~~-----------------------------~~~~i~~~~~~p-----dg~~lasg-~~dg~i~iw  197 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAK-----------------------------SDVEYSSGVLHK-----DSLLLALY-SPDGILDVY  197 (343)
T ss_dssp             EEESSSSCEEEEECCC-----------------------------SSCCCCEEEECT-----TSCEEEEE-CTTSCEEEE
T ss_pred             EEECCCCcEEEEEecC-----------------------------CCCceEEEEECC-----CCCEEEEE-cCCCEEEEE
Confidence            9999999886552100                             011123334432     22333332 345678899


Q ss_pred             EcCCCcEE--EEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCc
Q psy731          295 NYRTNDSH--IIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDF  372 (494)
Q Consensus       295 dl~~~~sw--rv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~  372 (494)
                      |+++++.-  ++..  -                 -...|..|+++|+    ++.|.-..-..-++|.+.+....      
T Consensus       198 d~~~~~~~~~~~~~--~-----------------h~~~v~~l~fs~~----g~~l~s~~~~~v~iwd~~~~~~~------  248 (343)
T 3lrv_A          198 NLSSPDQASSRFPV--D-----------------EEAKIKEVKFADN----GYWMVVECDQTVVCFDLRKDVGT------  248 (343)
T ss_dssp             ESSCTTSCCEECCC--C-----------------TTSCEEEEEECTT----SSEEEEEESSBEEEEETTSSTTC------
T ss_pred             ECCCCCCCccEEec--c-----------------CCCCEEEEEEeCC----CCEEEEEeCCeEEEEEcCCCCcc------
Confidence            99987632  1110  0                 0134778999986    35666655222255554332110      


Q ss_pred             cccccceEEe-cccCCCCCCCeEEeeCCCCeEEEeccC-CCeEEEEeCCC
Q psy731          373 SRSNFDFKVM-GSRGTGSQSGASSLDEETGVIFYALLV-KSGVGCWNTFR  420 (494)
Q Consensus       373 ~~~~~~v~~~-G~~G~~~qs~g~~~D~~~G~ly~~~~~-~~aI~~w~~~~  420 (494)
                          ..++.+ ++... ..+..++++ .+|....+-.. .+.|..|+..+
T Consensus       249 ----~~~~~~~~~~~~-~~~~~~~~~-~~g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          249 ----LAYPTYTIPEFK-TGTVTYDID-DSGKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             ----BSSCCCBC------CCEEEEEC-TTSSEEEEEETTTTEEEEEEECT
T ss_pred             ----eeeccccccccc-ccceEEEEC-CCCCEEEEecCCCCcEEEEEEcc
Confidence                011110 01100 001358899 57765555444 88899998755

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=84.05  E-value=39  Score=34.32  Aligned_cols=176  Identities=11%  Similarity=0.146  Sum_probs=99.8

Q ss_pred             CEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCC
Q psy731          156 PSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDP  235 (494)
Q Consensus       156 Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp  235 (494)
                      ..+..|++.+++.++.+..+.        ....+.+.       +.++.++....+.|.+||+.++.....   .+    
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-------~~~l~~~~~~d~~i~~~~~~~~~~~~~---~~----  484 (615)
T 1pgu_A          427 DDLLILQSFTGDIIKSVRLNS--------PGSAVSLS-------QNYVAVGLEEGNTIQVFKLSDLEVSFD---LK----  484 (615)
T ss_dssp             SEEEEEETTTCCEEEEEECSS--------CEEEEEEC-------SSEEEEEETTTSCEEEEETTEEEEEEE---CS----
T ss_pred             CceEEEeccCCceeeecccCC--------CceEEEEc-------CCEEEEeecCCCeEEEEECCCcccccc---cc----
Confidence            378888998998888776544        22223331       456666665467899999988765311   00    


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                            .........+.+..     ++.++.... .+..|.+||+.+++.-+..... +     
T Consensus       485 ----------------------~~~~~~v~~~~~s~-----~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~-h-----  530 (615)
T 1pgu_A          485 ----------------------TPLRAKPSYISISP-----SETYIAAGD-VMGKILLYDLQSREVKTSRWAF-R-----  530 (615)
T ss_dssp             ----------------------SCCSSCEEEEEECT-----TSSEEEEEE-TTSCEEEEETTTTEEEECCSCC-C-----
T ss_pred             ----------------------CCccCceEEEEECC-----CCCEEEEcC-CCCeEEEeeCCCCcceeEeecC-C-----
Confidence                                  01112234444432     234554443 3567999999988754332110 1     


Q ss_pred             cceEEcCEEeeeecceeeeeecc----------CCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEE-ec
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSP----------LTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKV-MG  383 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp----------~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~-~G  383 (494)
                                  ...+..++.+|          +    ++.|......+. ++|.+.+..            ..++. .|
T Consensus       531 ------------~~~v~~~~~sp~~~~~~~~~~~----~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~  582 (615)
T 1pgu_A          531 ------------TSKINAISWKPAEKGANEEEIE----EDLVATGSLDTNIFIYSVKRPM------------KIIKALNA  582 (615)
T ss_dssp             ------------SSCEEEEEECCCC------CCS----CCEEEEEETTSCEEEEESSCTT------------CCEEETTS
T ss_pred             ------------CCceeEEEEcCccccccccccC----CCEEEEEcCCCcEEEEECCCCc------------eechhhhc
Confidence                        13477799988          4    356666655554 677665421            01111 12


Q ss_pred             ccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          384 SRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       384 ~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..   ....+++.. .+|. .++--....|..|+.+.
T Consensus       583 h~---~~v~~l~~s-~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          583 HK---DGVNNLLWE-TPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ST---TCEEEEEEE-ETTE-EEEEETTSCEEEEEEC-
T ss_pred             Cc---cceEEEEEc-CCCC-eEEecCCceEEEEeeec
Confidence            22   234567777 5677 56666778899998764

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=83.88  E-value=18  Score=39.16  Aligned_cols=27  Identities=22%  Similarity=0.127  Sum_probs=21.7

Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEecC
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHHN  307 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~~  307 (494)
                      +..||+.|   +.|.++|+.+++..|++..
T Consensus       124 ~~la~~~~---~~i~~~~~~~~~~~~lt~~  150 (740)
T 4a5s_A          124 HKLAYVWN---NDIYVKIEPNLPSYRITWT  150 (740)
T ss_dssp             TCEEEEET---TEEEEESSTTSCCEECCSC
T ss_pred             CEEEEEEC---CeEEEEECCCCceEEEcCC
Confidence            56788875   6799999999998888653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=83.86  E-value=21  Score=35.47  Aligned_cols=98  Identities=11%  Similarity=0.056  Sum_probs=53.4

Q ss_pred             CCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechh
Q psy731          286 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKV  364 (494)
Q Consensus       286 ~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~  364 (494)
                      ..+..|.+||++++....+.+.....                 ..+..++.+|+    ++.|......+. .+|.+.++.
T Consensus       184 s~D~~v~iwd~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~----~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          184 SMEGTTRLQDFKGNILRVFASSDTIN-----------------IWFCSLDVSAS----SRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             CSSSCEEEEETTSCEEEEEECCSSCS-----------------CCCCCEEEETT----TTEEEEECSSSBEEEEESSSCB
T ss_pred             eCCCEEEEeeccCCceeEEeccCCCC-----------------ccEEEEEECCC----CCEEEEEeCCCcEeeeccCcce
Confidence            34567889999887655544322111                 12345667665    245555444443 455443322


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      +..             ..|..   ....++++.|....++.+--....|..||..+
T Consensus       243 ~~~-------------~~~h~---~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~  282 (435)
T 4e54_B          243 LWN-------------LRMHK---KKVTHVALNPCCDWFLATASVDQTVKIWDLRQ  282 (435)
T ss_dssp             CCC-------------SBCCS---SCEEEEEECTTCSSEEEEEETTSBCCEEETTT
T ss_pred             eEE-------------Eeccc---ceEEeeeecCCCceEEEEecCcceeeEEeccc
Confidence            211             11222   23456777754445666666778899999875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=83.66  E-value=29  Score=32.54  Aligned_cols=106  Identities=8%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             CCCeEEEEEcCCCc-EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechh
Q psy731          287 GHNHIVVYNYRTND-SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKV  364 (494)
Q Consensus       287 ~~~gliVydl~~~~-swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~  364 (494)
                      .+..|.+||+++++ .+.+.+....                ....+..|+.+|++.. .+.|......+. ++|.+.+..
T Consensus       180 ~dg~i~i~d~~~~~~~~~~~~~~~~----------------h~~~v~~~~~sp~~~~-~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          180 ADNLVKIWKYNSDAQTYVLESTLEG----------------HSDWVRDVAWSPTVLL-RSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEEECC----------------CSSCEEEEEECCCCSS-SEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCeEEEEEecCCCcceeeEEEEec----------------ccCcEeEEEECCCCCC-CCeEEEEeCCCEEEEEeCCCCC
Confidence            35578899988654 2333221100                0133777899886211 356776666554 677665421


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      -   .       .....+...+.......++++ .+|.++++--....|..|+...
T Consensus       243 ~---~-------~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          243 G---P-------WKKTLLKEEKFPDVLWRASWS-LSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             S---C-------CEEEESSSSCCSSCEEEEEEC-SSSCCEEEEESSSSEEEEEEEE
T ss_pred             c---c-------ceeeeeccccCCCcEEEEEEc-CCCCEEEEecCCCcEEEEeCCC
Confidence            0   0       001111111112234566787 5666555555578899999864

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.32  E-value=2.5  Score=40.95  Aligned_cols=104  Identities=16%  Similarity=0.087  Sum_probs=60.0

Q ss_pred             eeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCe
Q psy731          333 GMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSG  412 (494)
Q Consensus       333 gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~a  412 (494)
                      -||++|+   |  .||--  ++.++|+++..-=     ........-+.+|+.|-+. -..+.+| .+|+||.+  ....
T Consensus        45 ~laf~P~---G--~LYaV--~~G~Ly~~~~~t~-----~~~~W~~s~t~IG~~Gw~~-F~a~~fD-~~G~LYav--~dG~  108 (236)
T 1tl2_A           45 FLFLSPG---G--ELYGV--LNDKIYKGTPPTH-----DNDNWMGRAKKIGNGGWNQ-FQFLFFD-PNGYLYAV--SKDK  108 (236)
T ss_dssp             EEEECTT---S--CEEEE--ETTEEEEESCCCS-----TTCCHHHHCEEEECSCGGG-CSEEEEC-TTSCEEEE--ETTE
T ss_pred             eEEECCC---c--cEEEE--eCCeEEEECCCCC-----CcccccccccEeccccccc-ceEEEEC-CCCCEEEe--CCCE
Confidence            4777663   2  46665  4456777764211     1111112245566655433 6789999 89999999  5589


Q ss_pred             EEEEeCCCCccccccceeeeeecCCeE----ecc--cceEEcCCceEEEEecC
Q psy731          413 VGCWNTFRGEEYNEKSMGLVAEDNATL----IYP--SDIRVDRTGVLWVLSNK  459 (494)
Q Consensus       413 I~~w~~~~~~~~~~~~~~~v~~d~~~l----~~p--d~~~id~~g~Lwvlsnr  459 (494)
                      |+++++-+.     .+-..+..  .+.    -|.  .-++++++|.||..++.
T Consensus       109 iyr~~pP~~-----~~~~Wl~~--a~~vg~~gw~~~~~lff~p~G~Lyav~dg  154 (236)
T 1tl2_A          109 LYKASPPQS-----DTDNWIAR--ATEVGSGGWSGFKFLFFHPNGYLYAVHGQ  154 (236)
T ss_dssp             EEEESCCCS-----TTCCHHHH--SEEEECSSGGGEEEEEECTTSCEEEEETT
T ss_pred             EEEeCCCcC-----CCCceecc--ccEeccCCCCceEEEEECCCceEEEEeCC
Confidence            999997220     11122111  111    111  56678999999988744

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=83.20  E-value=56  Score=35.48  Aligned_cols=106  Identities=8%  Similarity=0.040  Sum_probs=57.8

Q ss_pred             CCCeEEEEEcCCCc-EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechh
Q psy731          287 GHNHIVVYNYRTND-SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKV  364 (494)
Q Consensus       287 ~~~gliVydl~~~~-swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~  364 (494)
                      .+..|.+||++++. .+++.+....                -...+..|+.+|++.. ++.|+.....+. ++|.+.+..
T Consensus       178 ~dg~I~iwd~~~~~~~~~~~~~~~~----------------h~~~V~~l~~sp~~~~-~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          178 ADNLVKIWKYNSDAQTYVLESTLEG----------------HSDWVRDVAWSPTVLL-RSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             TTSCEEEEEEETTTTEEEEEEEECC----------------CSSCEEEEEECCCCSS-SEEEEEEESSSCEEEEEESSSS
T ss_pred             CCCeEEEEeccCCcccceeeeeecC----------------CCCcEEEEEeccCCCC-CCEEEEEecCCEEEEecCCCCC
Confidence            45678899988653 2222221100                0234778999986211 366777666654 677765531


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      -.-.        ..  .....+......+++++ .+|..+++--....|..|+...
T Consensus       241 ~~~~--------~~--~~~~~~~~~~v~~l~~s-pdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          241 GPWK--------KT--LLKEEKFPDVLWRASWS-LSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SCCB--------CC--BSSSSCCSSCCCCEEEC-TTTCCEEEECSSSCEECCBCCS
T ss_pred             Ccce--------eE--EeccCCCCCceEEEEEc-CCCCEEEEEcCCCEEEEEecCC
Confidence            1000        00  01111112335567888 5676666666678899999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=83.00  E-value=33  Score=32.67  Aligned_cols=97  Identities=8%  Similarity=0.102  Sum_probs=55.3

Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||+++++..++.....                  ...+..++++|++    +.|.-....+. ++|.+.+...
T Consensus       147 ~dg~i~~wd~~~~~~~~~~~~~~------------------~~~i~~~~~~pdg----~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          147 NRGTIGFQSYEDDSQYIVHSAKS------------------DVEYSSGVLHKDS----LLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             TTCCEEEEESSSSCEEEEECCCS------------------SCCCCEEEECTTS----CEEEEECTTSCEEEEESSCTTS
T ss_pred             CCCcEEEEECCCCcEEEEEecCC------------------CCceEEEEECCCC----CEEEEEcCCCEEEEEECCCCCC
Confidence            45678999999888755432210                  1225668888862    45555444443 6666654322


Q ss_pred             cCCCcCccccccceEEec-ccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMG-SRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G-~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .-           .+..+ ..   .....+++. .+|...++-- .+.|..||.+++
T Consensus       205 ~~-----------~~~~~~h~---~~v~~l~fs-~~g~~l~s~~-~~~v~iwd~~~~  245 (343)
T 3lrv_A          205 AS-----------SRFPVDEE---AKIKEVKFA-DNGYWMVVEC-DQTVVCFDLRKD  245 (343)
T ss_dssp             CC-----------EECCCCTT---SCEEEEEEC-TTSSEEEEEE-SSBEEEEETTSS
T ss_pred             Cc-----------cEEeccCC---CCEEEEEEe-CCCCEEEEEe-CCeEEEEEcCCC
Confidence            10           01112 22   235577888 5675444444 449999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=82.57  E-value=38  Score=33.01  Aligned_cols=105  Identities=12%  Similarity=0.116  Sum_probs=59.2

Q ss_pred             ecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeec
Q psy731          284 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTT  362 (494)
Q Consensus       284 ~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T  362 (494)
                      +=..+..|.+||+.+++.-......+...              ....+..++.++.+   ...|.-....++ ++|.+.+
T Consensus       175 s~s~D~~i~~wd~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~---~~~l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          175 TGSGDQTCVLWDVTTGQRISIFGSEFPSG--------------HTADVLSLSINSLN---ANMFISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             EECTTSCEEEECTTTCCEEEEECCCSSSS--------------CCSCEEEEEECSSS---CCEEEEEETTSCEEEEETTT
T ss_pred             EECCCCcEEEEEcCCCcEEEEeecccCCC--------------CccCeEEEEeecCC---CCEEEEEECCCeEEEEECCC
Confidence            33456789999999887655432211100              01235566665531   234444444443 5554421


Q ss_pred             hhhcCCCcCccccccce-EEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          363 KVLQNRSLDFSRSNFDF-KVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v-~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                           ..       ..+ ...|..   .....+++. .+|..+++--....|..||..+|
T Consensus       238 -----~~-------~~~~~~~~h~---~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          238 -----TS-------RAVRTYHGHE---GDINSVKFF-PDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             -----TC-------CCCEEECCCS---SCCCEEEEC-TTSSEEEEECSSSCEEEEETTTT
T ss_pred             -----CC-------cceEEECCcC---CCeEEEEEe-cCCCeEEEEcCCCeEEEEECCCC
Confidence                 00       111 122433   335678888 68888888888899999999875

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=82.32  E-value=61  Score=35.25  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=19.2

Q ss_pred             CCCeEEEeccCCCeEEEEeCCCCcc
Q psy731          399 ETGVIFYALLVKSGVGCWNTFRGEE  423 (494)
Q Consensus       399 ~~G~ly~~~~~~~aI~~w~~~~~~~  423 (494)
                      ..|.+|++. ....|.+||.++|++
T Consensus       485 agglvf~gt-~dg~l~a~D~~tG~~  508 (689)
T 1yiq_A          485 AGNLVFEGS-ADGRVIAYAADTGEK  508 (689)
T ss_dssp             TTTEEEEEC-TTSEEEEEETTTCCE
T ss_pred             CCCEEEEEC-CCCcEEEEECCCCcc
Confidence            678999985 567899999988743

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=81.41  E-value=63  Score=34.83  Aligned_cols=82  Identities=17%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             EEEcCCCeEEEEeCCCCC-CCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCC
Q psy731          132 VQSDPCDRLWALDSGVVE-GKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH  210 (494)
Q Consensus       132 i~iD~~~~LwvlD~G~~~-~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~  210 (494)
                      +.+.++++..++-.+... .+......+..||+.++++.+   |..     .......++.    ..+++.-||+.|   
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~---l~~-----~~~~~~~~~~----SPdG~~la~~~~---  131 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT---EER-----IPNNTQWVTW----SPVGHKLAYVWN---  131 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC---SSC-----CCTTEEEEEE----CSSTTCEEEEET---
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE---ccc-----CCCcceeeEE----CCCCCEEEEEEC---
Confidence            444556654444333210 001122467778888877543   111     1223333333    334677888876   


Q ss_pred             CeEEEEEccCCceeEEec
Q psy731          211 NHIVVYNYRTNDSHIIHH  228 (494)
Q Consensus       211 ~~iIVyd~~~~~~~rv~~  228 (494)
                      +.|.++|+.+|...+++.
T Consensus       132 ~~i~~~~~~~~~~~~lt~  149 (740)
T 4a5s_A          132 NDIYVKIEPNLPSYRITW  149 (740)
T ss_dssp             TEEEEESSTTSCCEECCS
T ss_pred             CeEEEEECCCCceEEEcC
Confidence            679999999999998843

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=81.31  E-value=50  Score=33.55  Aligned_cols=100  Identities=10%  Similarity=0.029  Sum_probs=55.6

Q ss_pred             EEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeec---ceeeeeeccCCCCCceeEEEeeCCCc-ce
Q psy731          282 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQT---GIHGMSLSPLTRDNFRVMYFHPLAST-TE  357 (494)
Q Consensus       282 YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~---Gi~gIaLsp~~~~g~r~LYf~plss~-~l  357 (494)
                      .++-..+..|.+||+.+++.-+.....                   ..   .+..++++|+.   ++.|+.....+. .+
T Consensus       176 l~~~~~d~~v~vwd~~~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~~---~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          176 SMTVGDDGSVVFYQGPPFKFSASDRTH-------------------HKQGSFVRDVEFSPDS---GEFVITVGSDRKISC  233 (615)
T ss_dssp             EEEEETTTEEEEEETTTBEEEEEECSS-------------------SCTTCCEEEEEECSTT---CCEEEEEETTCCEEE
T ss_pred             EEEEeCCCcEEEEeCCCcceeeeeccc-------------------CCCCceEEEEEECCCC---CCEEEEEeCCCeEEE
Confidence            333345678889998876543322110                   11   36778898851   256666555443 55


Q ss_pred             EeeechhhcCCCcCccccccceEEe-----cccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          358 FAVTTKVLQNRSLDFSRSNFDFKVM-----GSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       358 y~V~T~~L~~~~~~~~~~~~~v~~~-----G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      |.+.+..             .+..+     +..   .....+++.  +|.++++--....|..||..++
T Consensus       234 wd~~~~~-------------~~~~~~~~~~~~~---~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          234 FDGKSGE-------------FLKYIEDDQEPVQ---GGIFALSWL--DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             EETTTCC-------------EEEECCBTTBCCC---SCEEEEEES--SSSEEEEEETTSEEEEEETTTT
T ss_pred             EECCCCC-------------EeEEecccccccC---CceEEEEEc--CCCEEEEEcCCCcEEEEECCCC
Confidence            5543211             11222     222   223455665  6666666667788999998864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=80.77  E-value=44  Score=32.57  Aligned_cols=59  Identities=3%  Similarity=-0.048  Sum_probs=37.2

Q ss_pred             CCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          391 SGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       391 s~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      ...+++. .+|.+..+--....|..||..++.+.     ..+.+..  -.+..++.+.+||.+.++.
T Consensus       272 V~~~~~S-pdg~~lasgs~D~~V~iwd~~~~~~~-----~~~~~gH--~~~V~~v~fSpdg~~laS~  330 (365)
T 4h5i_A          272 ITSMDVD-MKGELAVLASNDNSIALVKLKDLSMS-----KIFKQAH--SFAITEVTISPDSTYVASV  330 (365)
T ss_dssp             EEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEE-----EEETTSS--SSCEEEEEECTTSCEEEEE
T ss_pred             eEeEEEC-CCCCceEEEcCCCEEEEEECCCCcEE-----EEecCcc--cCCEEEEEECCCCCEEEEE
Confidence            4567888 68887777777889999999875322     2221110  1245677777777655543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=80.74  E-value=48  Score=32.98  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=48.3

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECC--CCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLR--QQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~--t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      .|..+...++++..++=.+..  .     .|.+||+.  +++.++.+.-..     .......+.+.     .++.+++.
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~d--g-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~s-----p~~~~l~~  166 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSD--K-----SLLVFDVDKTSKNVLKLRKRFC-----FSKRPNAISIA-----EDDTTVII  166 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGG--T-----EEEEEEECSSSSSCEEEEEEEE-----CSSCEEEEEEC-----TTSSEEEE
T ss_pred             ceEEEEEcCCCCEEEEEECCC--C-----eEEEEECcCCCCceeeeeeccc-----CCCCceEEEEc-----CCCCEEEE
Confidence            577778888887653322222  1     68888988  887777664211     11233344442     25567777


Q ss_pred             eeCCCCeEEEEEccCCcee
Q psy731          206 ADSGHNHIVVYNYRTNDSH  224 (494)
Q Consensus       206 tDs~~~~iIVyd~~~~~~~  224 (494)
                      ++. .+.+.+||+.++...
T Consensus       167 ~~~-~g~v~~~~~~~~~~~  184 (450)
T 2vdu_B          167 ADK-FGDVYSIDINSIPEE  184 (450)
T ss_dssp             EET-TSEEEEEETTSCCCS
T ss_pred             EeC-CCcEEEEecCCcccc
Confidence            765 567889998877653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=80.72  E-value=39  Score=31.97  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=77.2

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp  235 (494)
                      .|..||+++.+....+.-       ..+.+..+.+.     .+..++. +=+..+.|.+||+.+++.-+. .+       
T Consensus       177 ~i~~wd~~~~~~~~~~~~-------h~~~v~~~~~s-----p~g~~l~-s~~~dg~i~iwd~~~~~~~~~~~~-------  236 (319)
T 3frx_A          177 MVKAWNLNQFQIEADFIG-------HNSNINTLTAS-----PDGTLIA-SAGKDGEIMLWNLAAKKAMYTLSA-------  236 (319)
T ss_dssp             CEEEEETTTTEEEEEECC-------CCSCEEEEEEC-----TTSSEEE-EEETTCEEEEEETTTTEEEEEEEC-------
T ss_pred             EEEEEECCcchhheeecC-------CCCcEEEEEEc-----CCCCEEE-EEeCCCeEEEEECCCCcEEEEecC-------
Confidence            577788888877665431       23334444442     1233333 333457899999998875443 11       


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCC
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  315 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~  315 (494)
                                               ......+++..     +..++..+.  ..++.||++..+...+-....+....  
T Consensus       237 -------------------------~~~v~~~~~sp-----~~~~la~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~--  282 (319)
T 3frx_A          237 -------------------------QDEVFSLAFSP-----NRYWLAAAT--ATGIKVFSLDPQYLVDDLRPEFAGYS--  282 (319)
T ss_dssp             -------------------------CSCEEEEEECS-----SSSEEEEEE--TTEEEEEEETTEEEEEEECCCCTTCC--
T ss_pred             -------------------------CCcEEEEEEcC-----CCCEEEEEc--CCCcEEEEeCcCeeeeccCccccccc--
Confidence                                     01123333332     233444433  46789999987765554332211000  


Q ss_pred             cceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeech
Q psy731          316 GDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTK  363 (494)
Q Consensus       316 ~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~  363 (494)
                               -.....+..++.||+    ++.|+-..-.+. ++|.+.|+
T Consensus       283 ---------~~~~~~v~~~~~spd----g~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          283 ---------KAAEPHAVSLAWSAD----GQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             ---------GGGCCCEEEEEECTT----SSEEEEEETTSCEEEEEEEEC
T ss_pred             ---------cCcCcceeEEEECCC----CCEEEEeecCceEEEEEEeec
Confidence                     001234677999997    368877766665 78888764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=80.51  E-value=45  Score=32.58  Aligned_cols=209  Identities=15%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccc-----------cccCCccceEEEeecC
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDY-----------TEESKFSNMVVDVTSA  196 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~-----------~~~S~l~d~vVD~~~~  196 (494)
                      .|..+...+++++.+.  |..  .     .+.+||+.+++++.++.-......           .....+..+...    
T Consensus        66 ~V~~v~fspdg~~la~--g~~--~-----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s----  132 (393)
T 1erj_A           66 VVCCVKFSNDGEYLAT--GCN--K-----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS----  132 (393)
T ss_dssp             CCCEEEECTTSSEEEE--ECB--S-----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC----
T ss_pred             EEEEEEECCCCCEEEE--EcC--C-----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC----
Confidence            3556667777887775  222  1     577899999988876643220000           001112233331    


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCC
Q psy731          197 NCDNAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSAN  275 (494)
Q Consensus       197 ~c~~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~  275 (494)
                       .++.++.. =+..+.|.+||+.+++.-+. ..|.                               .....+.+..    
T Consensus       133 -~dg~~l~s-~~~d~~i~iwd~~~~~~~~~~~~h~-------------------------------~~v~~~~~~p----  175 (393)
T 1erj_A          133 -PDGKFLAT-GAEDRLIRIWDIENRKIVMILQGHE-------------------------------QDIYSLDYFP----  175 (393)
T ss_dssp             -TTSSEEEE-EETTSCEEEEETTTTEEEEEECCCS-------------------------------SCEEEEEECT----
T ss_pred             -CCCCEEEE-EcCCCeEEEEECCCCcEEEEEccCC-------------------------------CCEEEEEEcC----
Confidence             23444443 34567899999998876544 1110                               1122233321    


Q ss_pred             CCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          276 CDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       276 c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                       ++.+++.+ ..+..+.+||+++++.-...                    ....++..++++|.+   ++.|......+.
T Consensus       176 -~~~~l~s~-s~d~~v~iwd~~~~~~~~~~--------------------~~~~~v~~~~~~~~~---~~~l~~~s~d~~  230 (393)
T 1erj_A          176 -SGDKLVSG-SGDRTVRIWDLRTGQCSLTL--------------------SIEDGVTTVAVSPGD---GKYIAAGSLDRA  230 (393)
T ss_dssp             -TSSEEEEE-ETTSEEEEEETTTTEEEEEE--------------------ECSSCEEEEEECSTT---CCEEEEEETTSC
T ss_pred             -CCCEEEEe-cCCCcEEEEECCCCeeEEEE--------------------EcCCCcEEEEEECCC---CCEEEEEcCCCc
Confidence             22333322 34567889999887632211                    122346678888731   355655555544


Q ss_pred             -ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          356 -TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       356 -~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                       ++|.+.+..+...- ..    ..-...|..   .....++++ .+|.+.++--....|..||...
T Consensus       231 v~iwd~~~~~~~~~~-~~----~~~~~~~h~---~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          231 VRVWDSETGFLVERL-DS----ENESGTGHK---DSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             EEEEETTTCCEEEEE-C----------CCCS---SCEEEEEEC-TTSSEEEEEETTSEEEEEEC--
T ss_pred             EEEEECCCCcEEEee-cc----cccCCCCCC---CCEEEEEEC-CCCCEEEEEeCCCEEEEEECCC
Confidence             56655443221100 00    000001222   334567888 6787777777788999999865

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=80.21  E-value=9.3  Score=40.10  Aligned_cols=142  Identities=9%  Similarity=0.049  Sum_probs=75.5

Q ss_pred             eeeeccCCCCCceeEEEeeCCCcceEeeech-hhcCCCcCccccccceEE----ecccCCCCCCCeEEeeCC---CCeEE
Q psy731          333 GMSLSPLTRDNFRVMYFHPLASTTEFAVTTK-VLQNRSLDFSRSNFDFKV----MGSRGTGSQSGASSLDEE---TGVIF  404 (494)
Q Consensus       333 gIaLsp~~~~g~r~LYf~plss~~ly~V~T~-~L~~~~~~~~~~~~~v~~----~G~~G~~~qs~g~~~D~~---~G~ly  404 (494)
                      +||..|+   |...||+.-..+ +++.+... ..+...+  .++...+..    -++.|    .-|++++|.   +|.||
T Consensus        18 ~~a~~pd---G~~rl~V~er~G-~i~~~~~~g~~~~~~~--~~~~~~~~~g~~~~~e~G----llgia~~P~f~~n~~lY   87 (463)
T 2wg3_C           18 GALHSGD---GSQRLFILEKEG-YVKILTPEGEIFKEPY--LDIHKLVQSGIKGGDERG----LLSLAFHPNYKKNGKLY   87 (463)
T ss_dssp             EEECCSS---SSCCEEEEETTT-EEEEECTTSCBCSSCS--EECTTTBCCCCSSSCCCS----EEEEEECTTHHHHCEEE
T ss_pred             EEEECCC---CCeEEEEEeCCc-eEEEEeCCCCeeeeee--cCCcceeccCccccCCCc----ceeeEeCCCCcCCCEEE
Confidence            4888776   333688887776 67666421 0000010  011111110    11232    246899964   68899


Q ss_pred             EeccCC------------CeEEEEeCCCCc--cccccceeeeeecC--CeEecccceEEcCCceEEEEe-cCch--hhhc
Q psy731          405 YALLVK------------SGVGCWNTFRGE--EYNEKSMGLVAEDN--ATLIYPSDIRVDRTGVLWVLS-NKLP--VFLY  465 (494)
Q Consensus       405 ~~~~~~------------~aI~~w~~~~~~--~~~~~~~~~v~~d~--~~l~~pd~~~id~~g~Lwvls-nrl~--~~~~  465 (494)
                      +.....            ++|.+|....+.  .....+.++|.+-.  ..--|...|.+++||+|||.+ ++-.  .-..
T Consensus        88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~  167 (463)
T 2wg3_C           88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDME  167 (463)
T ss_dssp             EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHH
T ss_pred             EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccc
Confidence            886532            588888865310  12222334444321  123466778999999999996 2211  1111


Q ss_pred             CCCCCCcccEEEEEEechh
Q psy731          466 SKLKPEDINVRIFKSTVRN  484 (494)
Q Consensus       466 ~~~~~~~~nfrI~r~~~~~  484 (494)
                      ...+.+...=.|+|++++-
T Consensus       168 ~~q~~~~~~GkIlRi~~dg  186 (463)
T 2wg3_C          168 EMDGLSDFTGSVLRLDVDT  186 (463)
T ss_dssp             HCTTCCSCTTEEEEEBCCC
T ss_pred             cccCcCCCCeeEEEEECCC
Confidence            2334556666799998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	494
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.47
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.42
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.39
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.37
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.36
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.16
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.12
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.86
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.81
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.79
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.78
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.69
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.55
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.53
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.3
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.28
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.14
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.99
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.84
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	97.82
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.69
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.62
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.51
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.33
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.22
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.17
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	97.03
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.76
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	96.69
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	96.47
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	96.33
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	96.13
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	96.12
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.93
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	95.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.8
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	95.68
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	95.66
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	95.64
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	95.47
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.29
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	94.11
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	93.61
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	93.39
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	92.9
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	92.64
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	90.83
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.2
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	85.86
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	80.62

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.47  E-value=3.8e-11  Score=116.08  Aligned_cols=259  Identities=11%  Similarity=0.088  Sum_probs=176.1

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      +.++.++++|+||+.|....        +|.++|.... ......++.        ..+.+++|      .++.+||++.
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~--------~I~~i~p~g~-~~~~~~~~~--------~~~gla~~------~dG~l~v~~~   86 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVG--------EIVSITPDGN-QQIHATVEG--------KVSGLAFT------SNGDLVATGW   86 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTT--------EEEEECTTCC-EEEEEECSS--------EEEEEEEC------TTSCEEEEEE
T ss_pred             cCCEEECCCCCEEEEeCCCC--------EEEEEeCCCC-EEEEEcCCC--------CcceEEEc------CCCCeEEEec
Confidence            45789999999999999876        8999996654 333344333        45667775      3566999998


Q ss_pred             CCCeEEEEEccCC--ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          209 GHNHIVVYNYRTN--DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       209 ~~~~iIVyd~~~~--~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      ..+.+.++++...  ...++.                             ........+++++|.      ++.+|++|.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~n~i~~~~------~g~~~v~~~  131 (302)
T d2p4oa1          87 NADSIPVVSLVKSDGTVETLL-----------------------------TLPDAIFLNGITPLS------DTQYLTADS  131 (302)
T ss_dssp             CTTSCEEEEEECTTSCEEEEE-----------------------------ECTTCSCEEEEEESS------SSEEEEEET
T ss_pred             CCceEEEEEecccccceeecc-----------------------------ccCCccccceeEEcc------CCCEEeecc
Confidence            8888777776543  333331                             122344567888873      467899999


Q ss_pred             CCCeEEEEEcCCCcEEEEecCC-cccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNY-LHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~-~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L  365 (494)
                      ....+..+|..++..+.+.... ........          .....+||+.+.      ..||+......++|+++....
T Consensus       132 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ngi~~~~------~~l~~~~~~~~~i~~~~~~~~  195 (302)
T d2p4oa1         132 YRGAIWLIDVVQPSGSIWLEHPMLARSNSES----------VFPAANGLKRFG------NFLYVSNTEKMLLLRIPVDST  195 (302)
T ss_dssp             TTTEEEEEETTTTEEEEEEECGGGSCSSTTC----------CSCSEEEEEEET------TEEEEEETTTTEEEEEEBCTT
T ss_pred             ccccceeeeccCCcceeEecCCccceeeccC----------cccccccccccC------CceeeecCCCCeEEecccccc
Confidence            9999999999999888776442 22211111          112456777652      489999999989999876433


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                      ....        ..+...+.   ...+|+++| .+|+||++....++|.++++++  .     ...+++....+.+|+.+
T Consensus       196 ~~~~--------~~~~~~~~---~~pdgia~d-~dG~l~va~~~~~~V~~i~p~G--~-----~~~~~~~~~~~~~pt~v  256 (302)
T d2p4oa1         196 DKPG--------EPEIFVEQ---TNIDDFAFD-VEGNLYGATHIYNSVVRIAPDR--S-----TTIIAQAEQGVIGSTAV  256 (302)
T ss_dssp             SCBC--------CCEEEEES---CCCSSEEEB-TTCCEEEECBTTCCEEEECTTC--C-----EEEEECGGGTCTTEEEE
T ss_pred             cccc--------ccccccCC---CCCcceEEC-CCCCEEEEEcCCCcEEEECCCC--C-----EEEEEecCCCCCCceEE
Confidence            2111        11111111   236899999 8999999999999999999998  3     34555554567899999


Q ss_pred             EEcC---Cc-eEEEEecCchhhhcCCCCCCcccEEEEEEech
Q psy731          446 RVDR---TG-VLWVLSNKLPVFLYSKLKPEDINVRIFKSTVR  483 (494)
Q Consensus       446 ~id~---~g-~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~~  483 (494)
                      .++.   |+ .|||.++.-.....   .....+-+|+|+++.
T Consensus       257 afg~~~~D~~~Lyvtt~~g~~~~~---~~~~~~~~~~~~~~~  295 (302)
T d2p4oa1         257 AFGQTEGDCTAIYVVTNGGMFLPP---PTGVVPANVVRLEVG  295 (302)
T ss_dssp             EECCSTTTTTEEEEEECTTSSSCC---TTCCCCEEEEEEECS
T ss_pred             EEcCCCCCCCEEEEECCCCccCCC---cCCcCCCeEEEEeCC
Confidence            9953   33 69999987433222   224667899998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=7.7e-12  Score=118.72  Aligned_cols=230  Identities=14%  Similarity=0.154  Sum_probs=147.9

Q ss_pred             CceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          125 NLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       125 ~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      ...++.++.+|++|.+||.|.+...       +++.++..+..... ..+      .+......+++|      .++.+|
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~-------~i~~~~~~~~~~~~-~~~------~~~~~p~gvav~------~~g~i~   71 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYG-------RVVKLATGSTGTTV-LPF------NGLYQPQGLAVD------GAGTVY   71 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSC-------EEEEEC----CEEE-CCC------CSCCSCCCEEEC------TTCCEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCC-------EEEEEcCCCceEEE-ecc------CCccCceEEEEc------CCCCEE
Confidence            4578999999999999999987751       67777766554322 111      133445677886      356799


Q ss_pred             EeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEe
Q psy731          205 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIA  284 (494)
Q Consensus       205 ItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~  284 (494)
                      +||.....+.+++-.++ .+.+.                              ........+|++|.      ++.+|++
T Consensus        72 v~d~~~~~i~~~~~~~~-~~~~~------------------------------~~~~~~p~~iavd~------~g~i~v~  114 (260)
T d1rwia_          72 VTDFNNRVVTLAAGSNN-QTVLP------------------------------FDGLNYPEGLAVDT------QGAVYVA  114 (260)
T ss_dssp             EEETTTEEEEECTTCSC-CEECC------------------------------CCSCCSEEEEEECT------TCCEEEE
T ss_pred             Eeeeeeceeeeeeeccc-eeeee------------------------------eeeeeecccccccc------cceeEee
Confidence            99998655544332222 21111                              11123467788884      3458999


Q ss_pred             cCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechh
Q psy731          285 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKV  364 (494)
Q Consensus       285 D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~  364 (494)
                      |...+.+++++..+...|.+....+.                   +..||+++++   |  .+|+.-....+++++..+-
T Consensus       115 d~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~p~~i~~~~~---g--~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_         115 DRGNNRVVKLAAGSKTQTVLPFTGLN-------------------DPDGVAVDNS---G--NVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             EGGGTEEEEECTTCSSCEECCCCSCC-------------------SCCEEEECTT---C--CEEEEEGGGTEEEEECTTT
T ss_pred             ccccccccccccccceeeeeeecccC-------------------CcceeeecCC---C--CEeeecccccccccccccc
Confidence            98888899998887766655433221                   1346999875   2  5888766665777764322


Q ss_pred             hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccc
Q psy731          365 LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSD  444 (494)
Q Consensus       365 L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~  444 (494)
                      -.            ...+...+ ..+..|+++| .+|+||+++...+.|.+++++++       ...+... ..|..|.+
T Consensus       171 ~~------------~~~~~~~~-~~~p~gi~~d-~~g~l~vsd~~~~~i~~~~~~~~-------~~~~~~~-~~~~~P~~  228 (260)
T d1rwia_         171 NN------------QVVLPFTD-ITAPWGIAVD-EAGTVYVTEHNTNQVVKLLAGST-------TSTVLPF-TGLNTPLA  228 (260)
T ss_dssp             CC------------EEECCCSS-CCSEEEEEEC-TTCCEEEEETTTTEEEEECTTCS-------CCEECCC-CSCCCEEE
T ss_pred             ce------------eeeeeccc-cCCCccceee-eeeeeeeeecCCCEEEEEeCCCC-------eEEEEcc-CCCCCeEE
Confidence            10            01111111 2346799999 78999999999999999999872       2233332 45788999


Q ss_pred             eEEcCCceEEEEe
Q psy731          445 IRVDRTGVLWVLS  457 (494)
Q Consensus       445 ~~id~~g~Lwvls  457 (494)
                      |.+|++|.|||..
T Consensus       229 i~~d~~g~l~vad  241 (260)
T d1rwia_         229 VAVDSDRTVYVAD  241 (260)
T ss_dssp             EEECTTCCEEEEE
T ss_pred             EEEeCCCCEEEEE
Confidence            9999999999983

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.39  E-value=2.1e-11  Score=119.86  Aligned_cols=264  Identities=10%  Similarity=0.060  Sum_probs=157.6

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL  203 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v  203 (494)
                      ++|..+.++.+|++|+||+.|........ -.-+|++||+++++... +..|.  .....+..+.+++|.     +...+
T Consensus        15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~-~~g~I~r~d~~~~~~~~-~~~~~--~~~~~g~P~Gl~~~~-----dg~~l   85 (314)
T d1pjxa_          15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGK-PAGEILRIDLKTGKKTV-ICKPE--VNGYGGIPAGCQCDR-----DANQL   85 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTE-ECCEEEEECTTTCCEEE-EECCE--ETTEECCEEEEEECS-----SSSEE
T ss_pred             cCCCCCeEeEEeCCCCEEEEECccccccc-cCCEEEEEECCCCcEEE-EECCc--cccCCCcceeEEEeC-----CCCEE
Confidence            35556678899999999999987542111 12279999999987654 33333  222344567788873     45679


Q ss_pred             EEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEE
Q psy731          204 YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYI  283 (494)
Q Consensus       204 YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI  283 (494)
                      ||+|.. .+|+++|.+.+....+....-                          -......+++++|.      ++-+|+
T Consensus        86 ~vad~~-~~i~~~~~~g~~~~~~~~~~~--------------------------g~~~~~pndl~~d~------~G~lyv  132 (314)
T d1pjxa_          86 FVADMR-LGLLVVQTDGTFEEIAKKDSE--------------------------GRRMQGCNDCAFDY------EGNLWI  132 (314)
T ss_dssp             EEEETT-TEEEEEETTSCEEECCSBCTT--------------------------SCBCBCCCEEEECT------TSCEEE
T ss_pred             EEEECC-CeEEEEeCCCcEEEEEecccc--------------------------ccccCCCcEEEECC------CCCEEE
Confidence            999975 579999977665443311000                          01112357888884      467899


Q ss_pred             ecCCCC-----eEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeee---ecceeeeeeccCCCCCceeEEEeeCCCc
Q psy731          284 ADSGHN-----HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQW---QTGIHGMSLSPLTRDNFRVMYFHPLAST  355 (494)
Q Consensus       284 ~D~~~~-----gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~---~~Gi~gIaLsp~~~~g~r~LYf~plss~  355 (494)
                      +|....     ........+++.||+..              +|+...+   ...-+||+++|++......||+.-....
T Consensus       133 td~~~~~~~~~~~~~~~~~~G~v~~~~~--------------dg~~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~  198 (314)
T d1pjxa_         133 TAPAGEVAPADYTRSMQEKFGSIYCFTT--------------DGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTK  198 (314)
T ss_dssp             EECBCBCTTSCCCBTTSSSCEEEEEECT--------------TSCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred             ecCccCcccccccceeccCCceEEEEee--------------cCceeEeeCCcceeeeeEECCCCCcceeEEEEEeeccc
Confidence            986531     00001111222333321              1111111   1235789999975434457999777777


Q ss_pred             ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED  435 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d  435 (494)
                      +++++...  .+..+...   +-+..+...+ ....+||++| ++|+||++....+.|.++||++|+      .......
T Consensus       199 ~i~~~d~~--~~g~~~~~---~~~~~~~~~~-~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~------~~~~i~~  265 (314)
T d1pjxa_         199 KLWSYDIK--GPAKIENK---KVWGHIPGTH-EGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQ------PKMRIRC  265 (314)
T ss_dssp             EEEEEEEE--ETTEEEEE---EEEEECCCCS-SCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBS------CSEEEEC
T ss_pred             ceEEeecc--Ccccccee---eEEEEccccc-cccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCE------EEEEEEC
Confidence            88887521  12221111   1111111110 1235899999 899999999999999999999742      1222222


Q ss_pred             CCeEecccceEEcCCc-eEEEEec
Q psy731          436 NATLIYPSDIRVDRTG-VLWVLSN  458 (494)
Q Consensus       436 ~~~l~~pd~~~id~~g-~Lwvlsn  458 (494)
                       + ..+|+++.+++++ .|||++.
T Consensus       266 -p-~~~~t~~afg~d~~~lyVt~~  287 (314)
T d1pjxa_         266 -P-FEKPSNLHFKPQTKTIFVTEH  287 (314)
T ss_dssp             -S-SSCEEEEEECTTSSEEEEEET
T ss_pred             -C-CCCEEEEEEeCCCCEEEEEEC
Confidence             1 2589999998888 5999874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.37  E-value=5.7e-11  Score=116.54  Aligned_cols=266  Identities=12%  Similarity=0.078  Sum_probs=161.6

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      .++.++..|+.++||+.|....        +|+++|+.+++....+. +      .....+.++++      .++.+||+
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g--------~I~ri~p~g~~~~~~~~-~------~~~~p~gla~~------~dG~l~va   98 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEG--------NIFKINPETKEIKRPFV-S------HKANPAAIKIH------KDGRLFVC   98 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTC--------EEEEECTTTCCEEEEEE-C------SSSSEEEEEEC------TTSCEEEE
T ss_pred             cCcEeCEECCCCCEEEEECCCC--------EEEEEECCCCeEEEEEe-C------CCCCeeEEEEC------CCCCEEEE
Confidence            3457999999999999998776        89999999987665432 1      23456678876      46789999


Q ss_pred             eCCC----CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          207 DSGH----NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       207 Ds~~----~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      +.+.    .+|+.+|...+...++..                            .......++++++|.      ++.+|
T Consensus        99 ~~~~~~~~~~i~~~~~~~~~~~~~~~----------------------------~~~~~~~~nd~~~d~------~G~l~  144 (319)
T d2dg1a1          99 YLGDFKSTGGIFAATENGDNLQDIIE----------------------------DLSTAYCIDDMVFDS------KGGFY  144 (319)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEEEEC----------------------------SSSSCCCEEEEEECT------TSCEE
T ss_pred             ecCCCccceeEEEEcCCCceeeeecc----------------------------CCCcccCCcceeEEe------cccee
Confidence            8753    468888888887766621                            112234578888874      45689


Q ss_pred             EecCCCC------eEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcc
Q psy731          283 IADSGHN------HIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT  356 (494)
Q Consensus       283 I~D~~~~------gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~  356 (494)
                      ++|....      ++..++...+...++.               .  .+   ...+||+++|+    +++||+.-....+
T Consensus       145 vtd~~~~~~~~~g~v~~~~~dg~~~~~~~---------------~--~~---~~pnGia~s~d----g~~lyvad~~~~~  200 (319)
T d2dg1a1         145 FTDFRGYSTNPLGGVYYVSPDFRTVTPII---------------Q--NI---SVANGIALSTD----EKVLWVTETTANR  200 (319)
T ss_dssp             EEECCCBTTBCCEEEEEECTTSCCEEEEE---------------E--EE---SSEEEEEECTT----SSEEEEEEGGGTE
T ss_pred             ecccccccccCcceeEEEecccceeEEEe---------------e--cc---ceeeeeeeccc----cceEEEecccCCc
Confidence            9987532      2333332222211111               1  11   23578999997    3799998777778


Q ss_pred             eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecC
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDN  436 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~  436 (494)
                      ++++..+.  +...............+.   ....+||++| ++|+||+++...++|.++|+++  .+. ..+.+-.+..
T Consensus       201 I~~~d~~~--~g~~~~~~~~~~~~~~~~---~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G--~~l-~~i~~P~~~~  271 (319)
T d2dg1a1         201 LHRIALED--DGVTIQPFGATIPYYFTG---HEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRG--YPI-GQILIPGRDE  271 (319)
T ss_dssp             EEEEEECT--TSSSEEEEEEEEEEECCS---SSEEEEEEEB-TTCCEEEEEETTTEEEEECTTS--CEE-EEEECTTGGG
T ss_pred             eEEEEEcC--CCceeccccceeeeccCC---ccceeeeeEc-CCCCEEEEEcCCCEEEEECCCC--cEE-EEEeCCCcCC
Confidence            88885321  111100000011111111   2336899999 8999999999999999999987  432 1111112221


Q ss_pred             CeEecccceEEcCCc-eEEEEecCchhhhcCCCCCCcccEEEEEEechhhhcCCCC
Q psy731          437 ATLIYPSDIRVDRTG-VLWVLSNKLPVFLYSKLKPEDINVRIFKSTVRNAIKGTVC  491 (494)
Q Consensus       437 ~~l~~pd~~~id~~g-~Lwvlsnrl~~~~~~~~~~~~~nfrI~r~~~~~~i~~t~C  491 (494)
                      ....++..+.+..++ .||++++...         ..-.=.||++++  ..+|.++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~t~~~~~---------~~~~g~l~~~~~--~~~G~~~  316 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTNQLIICSNDIE---------MGGGSMLYTVNG--FAKGHQS  316 (319)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEECGG---------GTCCEEEEEEEC--SSCBCCC
T ss_pred             CcCceeeeEEEeCCCCEEEEEcCCCC---------cCCceeEEEEeC--CCccccc
Confidence            223466677776554 5777765431         122355777765  3555543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=1.8e-10  Score=110.08  Aligned_cols=250  Identities=12%  Similarity=0.103  Sum_probs=158.0

Q ss_pred             CCCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccC---CccceEEEeecCCCC
Q psy731          123 ARNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEES---KFSNMVVDVTSANCD  199 (494)
Q Consensus       123 ~~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S---~l~d~vVD~~~~~c~  199 (494)
                      +..|....+|.+|++++|||.|.+..        .|.+||.. ++.++.+.-..    .+.+   ...++.++-    ..
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~--------rI~v~d~~-G~~~~~~~~~~----~~~~~~~~p~~~~~~~----~~   81 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNH--------RIQIFDKE-GRFKFQFGECG----KRDSQLLYPNRVAVVR----NS   81 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGT--------EEEEECTT-SCEEEEECCBS----SSTTCBSSEEEEEEET----TT
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCC--------EEEEEeCC-CCEEEEecccC----CCcccccccccccccc----cc
Confidence            44588899999999999999999886        89999965 77777663211    1222   223344331    13


Q ss_pred             CcEEEEeeCCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          200 NAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       200 ~~~vYItDs~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      +.+++..+.....|.+++.. |...+. ..                              ........+++|.      +
T Consensus        82 ~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~------------------------------~~~~~p~~~avd~------~  124 (279)
T d1q7fa_          82 GDIIVTERSPTHQIQIYNQY-GQFVRKFGA------------------------------TILQHPRGVTVDN------K  124 (279)
T ss_dssp             TEEEEEECGGGCEEEEECTT-SCEEEEECT------------------------------TTCSCEEEEEECT------T
T ss_pred             cccceeccCCcccccccccc-ccceeecCC------------------------------Ccccccceecccc------C
Confidence            45555566666666666654 443333 11                              1112356677873      4


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceE
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEF  358 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly  358 (494)
                      +.+|++|.....+.++|.......++....-                  .....+|+.+++     ..+|+.--....++
T Consensus       125 G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~------------------~~~~~~i~~d~~-----g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         125 GRIIVVECKVMRVIIFDQNGNVLHKFGCSKH------------------LEFPNGVVVNDK-----QEIFISDNRAHCVK  181 (279)
T ss_dssp             SCEEEEETTTTEEEEECTTSCEEEEEECTTT------------------CSSEEEEEECSS-----SEEEEEEGGGTEEE
T ss_pred             CcEEEEeeccceeeEeccCCceeeccccccc------------------ccccceeeeccc-----eeEEeeecccccee
Confidence            6789999988889999877655444432210                  123456888754     36887554443444


Q ss_pred             eeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCC-eEEEEeCCCCccccccceeeeeecCC
Q psy731          359 AVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKS-GVGCWNTFRGEEYNEKSMGLVAEDNA  437 (494)
Q Consensus       359 ~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~-aI~~w~~~~~~~~~~~~~~~v~~d~~  437 (494)
                      ..+.    +.        +.+..+|..|......|+++| .+|+||+++...+ .|.++++++  .|    +..+... .
T Consensus       182 ~~d~----~G--------~~~~~~g~~g~~~~P~giavD-~~G~i~Vad~~~~~~v~~f~~~G--~~----~~~~~~~-~  241 (279)
T d1q7fa_         182 VFNY----EG--------QYLRQIGGEGITNYPIGVGIN-SNGEILIADNHNNFNLTIFTQDG--QL----ISALESK-V  241 (279)
T ss_dssp             EEET----TC--------CEEEEESCTTTSCSEEEEEEC-TTCCEEEEECSSSCEEEEECTTS--CE----EEEEEES-S
T ss_pred             eeec----CC--------ceeeeecccccccCCcccccc-cCCeEEEEECCCCcEEEEECCCC--CE----EEEEeCC-C
Confidence            3321    00        123344555555667899999 8999999997655 599999988  54    3445443 5


Q ss_pred             eEecccceEEcCCceEEEEe--cCchhhhcCCCC
Q psy731          438 TLIYPSDIRVDRTGVLWVLS--NKLPVFLYSKLK  469 (494)
Q Consensus       438 ~l~~pd~~~id~~g~Lwvls--nrl~~~~~~~~~  469 (494)
                      ....|.+++++++|.|||..  +++.+|.+..+.
T Consensus       242 ~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         242 KHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CCSCEEEEEEETTTEEEEEETTTEEEEEECSCCC
T ss_pred             CCCCEeEEEEeCCCcEEEEeCCCeEEEEEeeeec
Confidence            56789999999999999975  345556555543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.16  E-value=9.4e-09  Score=99.64  Aligned_cols=234  Identities=12%  Similarity=0.038  Sum_probs=146.6

Q ss_pred             eEEEc-CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC
Q psy731          131 KVQSD-PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG  209 (494)
Q Consensus       131 ~i~iD-~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~  209 (494)
                      +..-| +.++||.+|....        +|+++|+++++. +.+.+|.        ....+..+      .++.++++.  
T Consensus        22 gp~wd~~~~~l~wvDi~~~--------~I~r~d~~~g~~-~~~~~~~--------~~~~i~~~------~dg~l~va~--   76 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILER--------ELHELHLASGRK-TVHALPF--------MGSALAKI------SDSKQLIAS--   76 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGT--------EEEEEETTTTEE-EEEECSS--------CEEEEEEE------ETTEEEEEE--
T ss_pred             CCeEECCCCEEEEEECCCC--------EEEEEECCCCeE-EEEECCC--------CcEEEEEe------cCCCEEEEE--
Confidence            44555 5789999998766        899999999876 4688877        22334443      456777875  


Q ss_pred             CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC-
Q psy731          210 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH-  288 (494)
Q Consensus       210 ~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~-  288 (494)
                      ..+|++||..+++...+....                          .-.+...++++.+|.      ++.+|+++... 
T Consensus        77 ~~gl~~~d~~tg~~~~l~~~~--------------------------~~~~~~~~nd~~vd~------~G~iw~~~~~~~  124 (295)
T d2ghsa1          77 DDGLFLRDTATGVLTLHAELE--------------------------SDLPGNRSNDGRMHP------SGALWIGTMGRK  124 (295)
T ss_dssp             TTEEEEEETTTCCEEEEECSS--------------------------TTCTTEEEEEEEECT------TSCEEEEEEETT
T ss_pred             eCccEEeecccceeeEEeeee--------------------------cCCCcccceeeEECC------CCCEEEEecccc
Confidence            368999999999987773210                          112234678888884      45678887432 


Q ss_pred             ---CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhh
Q psy731          289 ---NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVL  365 (494)
Q Consensus       289 ---~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L  365 (494)
                         ..-.+|.+.+++..++.+.                    ..-.+|+++|++    .+.|||.--.+.++|+.+-..-
T Consensus       125 ~~~~~g~l~~~~~g~~~~~~~~--------------------~~~~Ng~~~s~d----~~~l~~~dt~~~~I~~~~~d~~  180 (295)
T d2ghsa1         125 AETGAGSIYHVAKGKVTKLFAD--------------------ISIPNSICFSPD----GTTGYFVDTKVNRLMRVPLDAR  180 (295)
T ss_dssp             CCTTCEEEEEEETTEEEEEEEE--------------------ESSEEEEEECTT----SCEEEEEETTTCEEEEEEBCTT
T ss_pred             ccccceeEeeecCCcEEEEeec--------------------cCCcceeeecCC----CceEEEeecccceeeEeeeccc
Confidence               2233344443433222211                    112578999987    4689996666667877753211


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccce
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDI  445 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~  445 (494)
                      .. ..    ..+.....-..+..+..+||++| ++|+||++.....+|.++||++  ++    .+.+.. +.  ..|+.+
T Consensus       181 ~~-~~----~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G--~~----~~~i~l-P~--~~~T~~  245 (295)
T d2ghsa1         181 TG-LP----TGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDG--NH----IARYEV-PG--KQTTCP  245 (295)
T ss_dssp             TC-CB----SSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTC--CE----EEEEEC-SC--SBEEEE
T ss_pred             cc-cc----ccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCC--cE----eeEecC-CC--CceEEE
Confidence            00 00    00111111112223457999999 9999999999999999999998  33    334432 22  368888


Q ss_pred             EEc-CC-ceEEEEecCc
Q psy731          446 RVD-RT-GVLWVLSNKL  460 (494)
Q Consensus       446 ~id-~~-g~Lwvlsnrl  460 (494)
                      .++ ++ ..|||+|.+-
T Consensus       246 ~FGG~d~~~LyvTta~~  262 (295)
T d2ghsa1         246 AFIGPDASRLLVTSARE  262 (295)
T ss_dssp             EEESTTSCEEEEEEBCT
T ss_pred             EEeCCCCCEEEEEECCc
Confidence            885 34 3799998653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.12  E-value=2.8e-09  Score=100.58  Aligned_cols=240  Identities=13%  Similarity=0.178  Sum_probs=154.1

Q ss_pred             Ceeeeeeee-CCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCeEE
Q psy731           63 CLPVSLDKW-HDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDRLW  141 (494)
Q Consensus        63 ~~p~gv~v~-~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~Lw  141 (494)
                      +=|.||++. +|++|++--.    .-..+..+.....        ......+          .++..+.++.+|..++||
T Consensus        14 ~~P~~vavd~dG~i~v~~~~----~~~~i~~~~~~~~--------~~~~~~~----------~~~~~p~gvav~~~g~i~   71 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEG----MYGRVVKLATGST--------GTTVLPF----------NGLYQPQGLAVDGAGTVY   71 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECS----SSCEEEEEC------------CEEECCC----------CSCCSCCCEEECTTCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcC----CCCEEEEEcCCCc--------eEEEecc----------CCccCceEEEEcCCCCEE
Confidence            559999994 8899987421    1112333322111        1122222          234557788999999999


Q ss_pred             EEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCC
Q psy731          142 ALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTN  221 (494)
Q Consensus       142 vlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~  221 (494)
                      |-|.+..        .+..++..+.+.+.    +.    ...+...+++||      .++.+|++|.....+++++....
T Consensus        72 v~d~~~~--------~i~~~~~~~~~~~~----~~----~~~~~p~~iavd------~~g~i~v~d~~~~~~~~~~~~~~  129 (260)
T d1rwia_          72 VTDFNNR--------VVTLAAGSNNQTVL----PF----DGLNYPEGLAVD------TQGAVYVADRGNNRVVKLAAGSK  129 (260)
T ss_dssp             EEETTTE--------EEEECTTCSCCEEC----CC----CSCCSEEEEEEC------TTCCEEEEEGGGTEEEEECTTCS
T ss_pred             Eeeeeec--------eeeeeeeccceeee----ee----eeeeeccccccc------ccceeEeeccccccccccccccc
Confidence            9998765        44444444444432    11    134556778887      35679999999999999998887


Q ss_pred             ceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcE
Q psy731          222 DSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDS  301 (494)
Q Consensus       222 ~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~s  301 (494)
                      ..+.+...                              .......|++|.      ++.+|++|.....|.+||..++..
T Consensus       130 ~~~~~~~~------------------------------~~~~p~~i~~~~------~g~~~v~~~~~~~i~~~d~~~~~~  173 (260)
T d1rwia_         130 TQTVLPFT------------------------------GLNDPDGVAVDN------SGNVYVTDTDNNRVVKLEAESNNQ  173 (260)
T ss_dssp             SCEECCCC------------------------------SCCSCCEEEECT------TCCEEEEEGGGTEEEEECTTTCCE
T ss_pred             eeeeeeec------------------------------ccCCcceeeecC------CCCEeeecccccccccccccccee
Confidence            77665211                              112345677773      234799999889999999887765


Q ss_pred             EEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEE
Q psy731          302 HIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKV  381 (494)
Q Consensus       302 wrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~  381 (494)
                      +.+.-..+                   ....||+++++   |  .||+.-....+++++...    ..        ..+.
T Consensus       174 ~~~~~~~~-------------------~~p~gi~~d~~---g--~l~vsd~~~~~i~~~~~~----~~--------~~~~  217 (260)
T d1rwia_         174 VVLPFTDI-------------------TAPWGIAVDEA---G--TVYVTEHNTNQVVKLLAG----ST--------TSTV  217 (260)
T ss_dssp             EECCCSSC-------------------CSEEEEEECTT---C--CEEEEETTTTEEEEECTT----CS--------CCEE
T ss_pred             eeeecccc-------------------CCCccceeeee---e--eeeeeecCCCEEEEEeCC----CC--------eEEE
Confidence            44332111                   12357999764   2  799988877788887432    11        1122


Q ss_pred             ecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          382 MGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       382 ~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ....+ .....|+++| ++|+||+++...+.|.+.++..
T Consensus       218 ~~~~~-~~~P~~i~~d-~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         218 LPFTG-LNTPLAVAVD-SDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CCCCS-CCCEEEEEEC-TTCCEEEEEGGGTEEEEECCCG
T ss_pred             EccCC-CCCeEEEEEe-CCCCEEEEECCCCEEEEEeCCC
Confidence            22222 2346799999 8899999999999999999876

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=3.7e-07  Score=87.21  Aligned_cols=185  Identities=12%  Similarity=0.106  Sum_probs=122.5

Q ss_pred             CCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccc-cccccceeeEEeeecCCC
Q psy731          198 CDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDY-TEESKFSNMVVDVTSANC  276 (494)
Q Consensus       198 c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~-~~~s~~~~i~VD~~~~~c  276 (494)
                      ..+..+|.+|...+.|...++.....-..                          .+ .+. .......+|+||-     
T Consensus        39 ~~~~~lYw~D~~~~~I~~~~l~~~~~~~~--------------------------~~-~~~~~~~~~p~glAvD~-----   86 (266)
T d1ijqa1          39 VASNRIYWSDLSQRMICSTQLDRAHGVSS--------------------------YD-TVISRDIQAPDGLAVDW-----   86 (266)
T ss_dssp             TTTTEEEEEETTTTEEEEEEC----------------------------------CE-EEECSSCSCCCEEEEET-----
T ss_pred             eCCCEEEEEECCCCEEEEEEecCCCCCcc--------------------------eE-EEEeCCCCCcceEEEee-----
Confidence            47899999999998888877654221000                          00 111 1123456789995     


Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-  355 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-  355 (494)
                      ..+.+|++|.....|.|+++.+.....+......                   -..+|++.|.    .+.|||.-..+. 
T Consensus        87 ~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~-------------------~P~~l~vd~~----~g~ly~~~~~~~~  143 (266)
T d1ijqa1          87 IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS-------------------KPRAIVVDPV----HGFMYWTDWGTPA  143 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC-------------------CEEEEEEETT----TTEEEEEECSSSC
T ss_pred             ccceEEEEecCCCEEEeEecCCceEEEEEcCCCC-------------------CcceEEEEcc----cCeEEEeccCCCc
Confidence            3577999999999999999987765554433211                   1245999875    369999764432 


Q ss_pred             ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED  435 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d  435 (494)
                      ++++...    |.+        ..+.+-..+ .....|+++|+.++.||+++...+.|.+.+.++      .+..++...
T Consensus       144 ~I~r~~~----dGs--------~~~~l~~~~-~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG------~~~~~~~~~  204 (266)
T d1ijqa1         144 KIKKGGL----NGV--------DIYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG------GNRKTILED  204 (266)
T ss_dssp             EEEEEET----TSC--------CEEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS------CSCEEEEEC
T ss_pred             ceeEecc----CCC--------ceecccccc-cceeeEEEeeccccEEEEecCCcCEEEEEECCC------CCEEEEEeC
Confidence            4555432    211        122222221 234679999988899999999999999999988      245677766


Q ss_pred             CCeEecccceEEcCCceEEEEe
Q psy731          436 NATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       436 ~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      ...+..|-+++++ +++||++.
T Consensus       205 ~~~~~~p~~lav~-~~~ly~td  225 (266)
T d1ijqa1         205 EKRLAHPFSLAVF-EDKVFWTD  225 (266)
T ss_dssp             TTTTSSEEEEEEE-TTEEEEEE
T ss_pred             CCcccccEEEEEE-CCEEEEEE
Confidence            6667889999998 57999985

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.86  E-value=1.1e-06  Score=80.31  Aligned_cols=233  Identities=13%  Similarity=0.132  Sum_probs=131.6

Q ss_pred             EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEcc
Q psy731          140 LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYR  219 (494)
Q Consensus       140 LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~  219 (494)
                      +||.+.+..        .|.+||++|+++++++.++.        ....++++     .++.++|+++...+.|.|||+.
T Consensus         4 ~yV~~~~~~--------~v~v~D~~t~~~~~~i~~g~--------~p~~va~s-----pdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           4 AYIANSESD--------NISVIDVTSNKVTATIPVGS--------NPMGAVIS-----PDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEETTTT--------EEEEEETTTTEEEEEEECSS--------SEEEEEEC-----TTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEECCCC--------EEEEEECCCCeEEEEEECCC--------CceEEEEe-----CCCCEEEEEECCCCEEEEEECC
Confidence            577777666        79999999999999998765        23455554     2678999999999999999999


Q ss_pred             CCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCC
Q psy731          220 TNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRT  298 (494)
Q Consensus       220 ~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~  298 (494)
                      ++..-+. ..+                                .....+.++.     ++.++|++...+..+.+++..+
T Consensus        63 t~~~~~~~~~~--------------------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  105 (301)
T d1l0qa2          63 TNNVIATVPAG--------------------------------SSPQGVAVSP-----DGKQVYVTNMASSTLSVIDTTS  105 (301)
T ss_dssp             TTEEEEEEECS--------------------------------SSEEEEEECT-----TSSEEEEEETTTTEEEEEETTT
T ss_pred             CCceeeeeecc--------------------------------cccccccccc-----ccccccccccccceeeeccccc
Confidence            9876443 110                                1122333332     3456666666666677777766


Q ss_pred             CcEEEE-ecC----CcccCCCCcceEE----cCEE-------------eeeecceeeeeeccCCCCCceeEEEeeCCCcc
Q psy731          299 NDSHII-HHN----YLHFDPLFGDFTI----GGVN-------------FQWQTGIHGMSLSPLTRDNFRVMYFHPLASTT  356 (494)
Q Consensus       299 ~~swrv-~~~----~~~~dP~~~~~~v----~G~~-------------f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~  356 (494)
                      ++.-+. .+.    .+...|....+.+    ++..             +....+...++++|+    .+.+|........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  181 (301)
T d1l0qa2         106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD----GTKVYVANFDSMS  181 (301)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTT----SSEEEEEETTTTE
T ss_pred             ceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeecc----ccceeeecccccc
Confidence            653332 222    1112222111111    0000             011233556777765    2566665544433


Q ss_pred             eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC--CCeEEEEeCCCCccccccceeeeee
Q psy731          357 EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV--KSGVGCWNTFRGEEYNEKSMGLVAE  434 (494)
Q Consensus       357 ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~--~~aI~~w~~~~~~~~~~~~~~~v~~  434 (494)
                      ......+..           ...... ..  .....++++++....+|++...  .+.|..||..++.     -...+..
T Consensus       182 ~~~~~~~~~-----------~~~~~~-~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~-----~~~~~~~  242 (301)
T d1l0qa2         182 ISVIDTVTN-----------SVIDTV-KV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK-----ITARIPV  242 (301)
T ss_dssp             EEEEETTTT-----------EEEEEE-EC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTE-----EEEEEEC
T ss_pred             cccccccce-----------eeeecc-cc--cCCcceeeccccccccccccccceeeeeeeeecCCCe-----EEEEEcC
Confidence            322222111           011111 11  1234678898555577776654  4679999998741     1222222


Q ss_pred             cCCeEecccceEEcCCc-eEEEEe
Q psy731          435 DNATLIYPSDIRVDRTG-VLWVLS  457 (494)
Q Consensus       435 d~~~l~~pd~~~id~~g-~Lwvls  457 (494)
                      .    ..|.++.+.++| +|||..
T Consensus       243 ~----~~~~~va~spdg~~l~va~  262 (301)
T d1l0qa2         243 G----PDPAGIAVTPDGKKVYVAL  262 (301)
T ss_dssp             C----SSEEEEEECTTSSEEEEEE
T ss_pred             C----CCEEEEEEeCCCCEEEEEE
Confidence            2    358899999998 588874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=1.1e-07  Score=90.88  Aligned_cols=179  Identities=13%  Similarity=0.152  Sum_probs=125.2

Q ss_pred             CCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCC
Q psy731          198 CDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCD  277 (494)
Q Consensus       198 c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~  277 (494)
                      ..+..+|.+|...+.|.+.++..+....+-.                              .......+|+||-.     
T Consensus        45 ~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~------------------------------~~~~~p~~iAvD~~-----   89 (263)
T d1npea_          45 CVDKVVYWTDISEPSIGRASLHGGEPTTIIR------------------------------QDLGSPEGIALDHL-----   89 (263)
T ss_dssp             TTTTEEEEEETTTTEEEEEESSSCCCEEEEC------------------------------TTCCCEEEEEEETT-----
T ss_pred             eCCCEEEEEECCCCeEEEEEcccCCcEEEEE------------------------------eccccccEEEEecc-----
Confidence            4789999999999999999998777666511                              11123568899853     


Q ss_pred             CcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc--
Q psy731          278 DAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST--  355 (494)
Q Consensus       278 ~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~--  355 (494)
                      ...+|.+|.....|.+.++.+.....+.+..+                   ....+|+|.|.    ...|||.--...  
T Consensus        90 ~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l-------------------~~p~~l~vdp~----~g~ly~t~~~~~~~  146 (263)
T d1npea_          90 GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGL-------------------VNPRGIVTDPV----RGNLYWTDWNRDNP  146 (263)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSC-------------------SSEEEEEEETT----TTEEEEEECCSSSC
T ss_pred             CCeEEEeccCCCEEEEEecCCceEEEEecccc-------------------cCCcEEEEecc----cCcEEEeecCCCCc
Confidence            57899999999999999988665433332221                   12356999886    369999654332  


Q ss_pred             ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeec
Q psy731          356 TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED  435 (494)
Q Consensus       356 ~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d  435 (494)
                      +++++..    |.+       .....+.+.  .....|+++|+.++.||+++...+.|.+.+.++  .    +..++++.
T Consensus       147 ~I~r~~~----dG~-------~~~~i~~~~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g--~----~~~~v~~~  207 (263)
T d1npea_         147 KIETSHM----DGT-------NRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ--P----GRRKVLEG  207 (263)
T ss_dssp             EEEEEET----TSC-------CCEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTE--E----EEEEEEEC
T ss_pred             EEEEecC----CCC-------Cceeeeeec--ccccceEEEeecCcEEEEEeCCCCEEEEEECCC--C----CeEEEECC
Confidence            3665543    111       111122221  234579999988899999999999999999998  2    45666654


Q ss_pred             CCeEecccceEEcCCceEEEEe
Q psy731          436 NATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       436 ~~~l~~pd~~~id~~g~Lwvls  457 (494)
                         +..|.+|+++ +++||++.
T Consensus       208 ---~~~P~~lav~-~~~lYwtd  225 (263)
T d1npea_         208 ---LQYPFAVTSY-GKNLYYTD  225 (263)
T ss_dssp             ---CCSEEEEEEE-TTEEEEEE
T ss_pred             ---CCCcEEEEEE-CCEEEEEE
Confidence               5679999997 68999996

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=1.2e-07  Score=92.33  Aligned_cols=197  Identities=12%  Similarity=0.093  Sum_probs=122.8

Q ss_pred             cCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccc
Q psy731          183 ESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEES  262 (494)
Q Consensus       183 ~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s  262 (494)
                      .-.|..+++|      .++.+|++|...+.|..||.+++....+.                              .....
T Consensus        39 ~~~lEG~~~D------~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~------------------------------~~~~~   82 (319)
T d2dg1a1          39 GLQLEGLNFD------RQGQLFLLDVFEGNIFKINPETKEIKRPF------------------------------VSHKA   82 (319)
T ss_dssp             CCCEEEEEEC------TTSCEEEEETTTCEEEEECTTTCCEEEEE------------------------------ECSSS
T ss_pred             CcCcEeCEEC------CCCCEEEEECCCCEEEEEECCCCeEEEEE------------------------------eCCCC
Confidence            3445677776      45679999999999999998887665541                              11223


Q ss_pred             cceeeEEeeecCCCCCcEEEEecCC----CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeecc
Q psy731          263 KFSNMVVDVTSANCDDAFLYIADSG----HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSP  338 (494)
Q Consensus       263 ~~~~i~VD~~~~~c~~~~~YI~D~~----~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp  338 (494)
                      ..+.|+++.      ++.+|+++.+    ..+++.++..++...++....-.                 ....+.+++++
T Consensus        83 ~p~gla~~~------dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------~~~~nd~~~d~  139 (319)
T d2dg1a1          83 NPAAIKIHK------DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-----------------AYCIDDMVFDS  139 (319)
T ss_dssp             SEEEEEECT------TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-----------------CCCEEEEEECT
T ss_pred             CeeEEEECC------CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc-----------------ccCCcceeEEe
Confidence            456778873      4568898765    34677887777766555432100                 12256688877


Q ss_pred             CCCCCceeEEEeeCCCcc------eEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCe
Q psy731          339 LTRDNFRVMYFHPLASTT------EFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSG  412 (494)
Q Consensus       339 ~~~~g~r~LYf~plss~~------ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~a  412 (494)
                      +   |  .||+.-+....      +|++...            ...++.+.+.  ...+.|+++|+....||+++...+.
T Consensus       140 ~---G--~l~vtd~~~~~~~~~g~v~~~~~d------------g~~~~~~~~~--~~~pnGia~s~dg~~lyvad~~~~~  200 (319)
T d2dg1a1         140 K---G--GFYFTDFRGYSTNPLGGVYYVSPD------------FRTVTPIIQN--ISVANGIALSTDEKVLWVTETTANR  200 (319)
T ss_dssp             T---S--CEEEEECCCBTTBCCEEEEEECTT------------SCCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred             c---c--ceeecccccccccCcceeEEEecc------------cceeEEEeec--cceeeeeeeccccceEEEecccCCc
Confidence            5   3  69998765432      4444211            0123333222  2346799999544579999999999


Q ss_pred             EEEEeCCC-CccccccceeeeeecCCeEecccceEEcCCceEEEEec
Q psy731          413 VGCWNTFR-GEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLSN  458 (494)
Q Consensus       413 I~~w~~~~-~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvlsn  458 (494)
                      |.+++.+. |....+........ ......||||.+|.+|+|||...
T Consensus       201 I~~~d~~~~g~~~~~~~~~~~~~-~~~~~~PdGl~vD~~G~l~Va~~  246 (319)
T d2dg1a1         201 LHRIALEDDGVTIQPFGATIPYY-FTGHEGPDSCCIDSDDNLYVAMY  246 (319)
T ss_dssp             EEEEEECTTSSSEEEEEEEEEEE-CCSSSEEEEEEEBTTCCEEEEEE
T ss_pred             eEEEEEcCCCceeccccceeeec-cCCccceeeeeEcCCCCEEEEEc
Confidence            99998643 10111111122222 24445699999999999999963

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.79  E-value=1.7e-07  Score=89.02  Aligned_cols=192  Identities=12%  Similarity=0.124  Sum_probs=116.6

Q ss_pred             cceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccccccccccee
Q psy731          187 SNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSN  266 (494)
Q Consensus       187 ~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~  266 (494)
                      ..++||      .++.+||||.+.+.|.|||.+....+.+..... ++                        .......+
T Consensus        26 ~gvavd------~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~-~~------------------------~~~~~p~~   74 (279)
T d1q7fa_          26 SGVAVN------AQNDIIVADTNNHRIQIFDKEGRFKFQFGECGK-RD------------------------SQLLYPNR   74 (279)
T ss_dssp             EEEEEC------TTCCEEEEEGGGTEEEEECTTSCEEEEECCBSS-ST------------------------TCBSSEEE
T ss_pred             cEEEEc------CCCCEEEEECCCCEEEEEeCCCCEEEEecccCC-Cc------------------------cccccccc
Confidence            456675      456799999999999999977555555511000 00                        00112334


Q ss_pred             eEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCcee
Q psy731          267 MVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRV  346 (494)
Q Consensus       267 i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~  346 (494)
                      ++++..    ...+++..+.....|.+++........+....+                   ....+||+.+.     ..
T Consensus        75 ~~~~~~----~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~-------------------~~p~~~avd~~-----G~  126 (279)
T d1q7fa_          75 VAVVRN----SGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL-------------------QHPRGVTVDNK-----GR  126 (279)
T ss_dssp             EEEETT----TTEEEEEECGGGCEEEEECTTSCEEEEECTTTC-------------------SCEEEEEECTT-----SC
T ss_pred             cccccc----ccccceeccCCccccccccccccceeecCCCcc-------------------cccceeccccC-----Cc
Confidence            444321    234455555555566666654333332222211                   12346888754     26


Q ss_pred             EEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccc
Q psy731          347 MYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNE  426 (494)
Q Consensus       347 LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~  426 (494)
                      +|+......+++....    +.        ..+..+|.........++++| ++|+||+++...+.|..+|+++  .+  
T Consensus       127 i~v~~~~~~~~~~~~~----~g--------~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d~~~~~V~~~d~~G--~~--  189 (279)
T d1q7fa_         127 IIVVECKVMRVIIFDQ----NG--------NVLHKFGCSKHLEFPNGVVVN-DKQEIFISDNRAHCVKVFNYEG--QY--  189 (279)
T ss_dssp             EEEEETTTTEEEEECT----TS--------CEEEEEECTTTCSSEEEEEEC-SSSEEEEEEGGGTEEEEEETTC--CE--
T ss_pred             EEEEeeccceeeEecc----CC--------ceeecccccccccccceeeec-cceeEEeeeccccceeeeecCC--ce--
Confidence            7777666555554421    11        122333433223456789999 8999999999999999999998  43  


Q ss_pred             cceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          427 KSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       427 ~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                        +..+... ..+.+|.||.+|++|+|||.-
T Consensus       190 --~~~~g~~-g~~~~P~giavD~~G~i~Vad  217 (279)
T d1q7fa_         190 --LRQIGGE-GITNYPIGVGINSNGEILIAD  217 (279)
T ss_dssp             --EEEESCT-TTSCSEEEEEECTTCCEEEEE
T ss_pred             --eeeeccc-ccccCCcccccccCCeEEEEE
Confidence              3445443 678999999999999999984

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.9e-06  Score=79.90  Aligned_cols=225  Identities=16%  Similarity=0.194  Sum_probs=141.2

Q ss_pred             ceEEeeEEEcC-CCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEE--EEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          126 LTSVVKVQSDP-CDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQI--RFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       126 lvsV~~i~iD~-~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi--~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      +.++.++..|. .++|+..|.+..        .|.+.++......  ....+.     ........++||.     ..+.
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~--------~I~~~~l~~~~~~~~~~~~~~-----~~~~~p~glAvD~-----~~~~   90 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQR--------MICSTQLDRAHGVSSYDTVIS-----RDIQAPDGLAVDW-----IHSN   90 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTT--------EEEEEEC--------CEEEEC-----SSCSCCCEEEEET-----TTTE
T ss_pred             CCceEEEEEEeCCCEEEEEECCCC--------EEEEEEecCCCCCcceEEEEe-----CCCCCcceEEEee-----ccce
Confidence            45677888884 678999998876        7777777542211  111111     1334566799986     5788


Q ss_pred             EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      +|++|++.+.|-|+++.......+-.                              ........|++|.     .++++|
T Consensus        91 lY~~d~~~~~I~v~~~~g~~~~~~~~------------------------------~~~~~P~~l~vd~-----~~g~ly  135 (266)
T d1ijqa1          91 IYWTDSVLGTVSVADTKGVKRKTLFR------------------------------ENGSKPRAIVVDP-----VHGFMY  135 (266)
T ss_dssp             EEEEETTTTEEEEEETTSSSEEEEEE------------------------------CTTCCEEEEEEET-----TTTEEE
T ss_pred             EEEEecCCCEEEeEecCCceEEEEEc------------------------------CCCCCcceEEEEc-----ccCeEE
Confidence            99999999999999998666444411                              1123467889985     368999


Q ss_pred             EecCCC-CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeee
Q psy731          283 IADSGH-NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVT  361 (494)
Q Consensus       283 I~D~~~-~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~  361 (494)
                      .+|.+. +.|...++.....-.+-...+                   ....|||+++.    .+.|||.--...++.++.
T Consensus       136 ~~~~~~~~~I~r~~~dGs~~~~l~~~~~-------------------~~p~gl~iD~~----~~~lYw~d~~~~~I~~~~  192 (266)
T d1ijqa1         136 WTDWGTPAKIKKGGLNGVDIYSLVTENI-------------------QWPNGITLDLL----SGRLYWVDSKLHSISSID  192 (266)
T ss_dssp             EEECSSSCEEEEEETTSCCEEEEECSSC-------------------SCEEEEEEETT----TTEEEEEETTTTEEEEEE
T ss_pred             EeccCCCcceeEeccCCCceeccccccc-------------------ceeeEEEeecc----ccEEEEecCCcCEEEEEE
Confidence            999765 457777776544322222111                   11457999875    368999755555666664


Q ss_pred             chhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          362 TKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       362 T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      .    |.+    +  ...-..+..+ .+..-|++++  .+.||+++...++|.+.+..+|     .+..++..+   +.-
T Consensus       193 ~----dG~----~--~~~~~~~~~~-~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g-----~~~~~~~~~---~~~  251 (266)
T d1ijqa1         193 V----NGG----N--RKTILEDEKR-LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG-----SDVNLLAEN---LLS  251 (266)
T ss_dssp             T----TSC----S--CEEEEECTTT-TSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC-----CCCEEEECS---CSC
T ss_pred             C----CCC----C--EEEEEeCCCc-ccccEEEEEE--CCEEEEEECCCCeEEEEECCCC-----cceEEEEcC---CCC
Confidence            3    221    0  0111112221 2345689998  5899999999999999997764     244556543   345


Q ss_pred             ccceEE
Q psy731          442 PSDIRV  447 (494)
Q Consensus       442 pd~~~i  447 (494)
                      |.++++
T Consensus       252 p~~i~v  257 (266)
T d1ijqa1         252 PEDMVL  257 (266)
T ss_dssp             CCCEEE
T ss_pred             ceEEEE
Confidence            777776

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=6.6e-06  Score=78.25  Aligned_cols=222  Identities=11%  Similarity=0.077  Sum_probs=145.0

Q ss_pred             eEEeeEEEc-CCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEE
Q psy731          127 TSVVKVQSD-PCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYI  205 (494)
Q Consensus       127 vsV~~i~iD-~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYI  205 (494)
                      ..+.++..| ..++|+..|.+..        +|.+.++........+  ..     .-.....++||.     -...+|.
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~--------~I~~~~l~g~~~~~v~--~~-----~~~~p~~iAvD~-----~~~~lY~   95 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEP--------SIGRASLHGGEPTTII--RQ-----DLGSPEGIALDH-----LGRTIFW   95 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTT--------EEEEEESSSCCCEEEE--CT-----TCCCEEEEEEET-----TTTEEEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCC--------eEEEEEcccCCcEEEE--Ee-----ccccccEEEEec-----cCCeEEE
Confidence            346677888 4678999998876        8999998766543322  11     223457889986     5789999


Q ss_pred             eeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEec
Q psy731          206 ADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIAD  285 (494)
Q Consensus       206 tDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D  285 (494)
                      +|.....|-+.++.......+-.                              ........|++|.     .++++|.+|
T Consensus        96 ~d~~~~~I~~~~~dg~~~~~l~~------------------------------~~l~~p~~l~vdp-----~~g~ly~t~  140 (263)
T d1npea_          96 TDSQLDRIEVAKMDGTQRRVLFD------------------------------TGLVNPRGIVTDP-----VRGNLYWTD  140 (263)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEC------------------------------SSCSSEEEEEEET-----TTTEEEEEE
T ss_pred             eccCCCEEEEEecCCceEEEEec------------------------------ccccCCcEEEEec-----ccCcEEEee
Confidence            99999999999987665433311                              0112367889985     368999999


Q ss_pred             CCC--CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeech
Q psy731          286 SGH--NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTK  363 (494)
Q Consensus       286 ~~~--~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~  363 (494)
                      .+.  +.|...++.....-.+.+..                +   ....|||+++.    .+.|||.-....++.++...
T Consensus       141 ~~~~~~~I~r~~~dG~~~~~i~~~~----------------~---~~P~glaiD~~----~~~lYw~d~~~~~I~~~~~~  197 (263)
T d1npea_         141 WNRDNPKIETSHMDGTNRRILAQDN----------------L---GLPNGLTFDAF----SSQLCWVDAGTHRAECLNPA  197 (263)
T ss_dssp             CCSSSCEEEEEETTSCCCEEEECTT----------------C---SCEEEEEEETT----TTEEEEEETTTTEEEEEETT
T ss_pred             cCCCCcEEEEecCCCCCceeeeeec----------------c---cccceEEEeec----CcEEEEEeCCCCEEEEEECC
Confidence            764  34666666554332222111                1   12357999875    36899976655567666542


Q ss_pred             hhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEeccc
Q psy731          364 VLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPS  443 (494)
Q Consensus       364 ~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd  443 (494)
                      --            ..+.+- .| ....-|++++  .|.||+++...++|.+.|..+|     +...++...  +-..|-
T Consensus       198 g~------------~~~~v~-~~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g-----~~~~~~~~~--~~~~~~  254 (263)
T d1npea_         198 QP------------GRRKVL-EG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS-----KEMDTFHPH--KQTRLY  254 (263)
T ss_dssp             EE------------EEEEEE-EC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT-----EEEEEECCS--SCCCCC
T ss_pred             CC------------CeEEEE-CC-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCC-----ccceEECCC--CCCCcc
Confidence            11            111121 12 1234689998  6899999999999999999874     244555543  335788


Q ss_pred             ceEEcC
Q psy731          444 DIRVDR  449 (494)
Q Consensus       444 ~~~id~  449 (494)
                      |+.+-+
T Consensus       255 gi~v~~  260 (263)
T d1npea_         255 GITIAL  260 (263)
T ss_dssp             CEEEEC
T ss_pred             eEEEeC
Confidence            988854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.55  E-value=2.5e-06  Score=81.43  Aligned_cols=191  Identities=12%  Similarity=0.054  Sum_probs=115.8

Q ss_pred             cCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccc
Q psy731          183 ESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEES  262 (494)
Q Consensus       183 ~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s  262 (494)
                      ..++.+++|+      .++.+|+||...+.|..+|.. |....+.                               ....
T Consensus        27 ~~~~e~iAv~------pdG~l~vt~~~~~~I~~i~p~-g~~~~~~-------------------------------~~~~   68 (302)
T d2p4oa1          27 NTFLENLASA------PDGTIFVTNHEVGEIVSITPD-GNQQIHA-------------------------------TVEG   68 (302)
T ss_dssp             TCCEEEEEEC------TTSCEEEEETTTTEEEEECTT-CCEEEEE-------------------------------ECSS
T ss_pred             CCCcCCEEEC------CCCCEEEEeCCCCEEEEEeCC-CCEEEEE-------------------------------cCCC
Confidence            3477888886      467799999999888888854 3333331                               1112


Q ss_pred             cceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCc--EEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCC
Q psy731          263 KFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTND--SHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLT  340 (494)
Q Consensus       263 ~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~--swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~  340 (494)
                      ....++++.      ++-+|+++.....+.++++.+..  ...+...     |.             ....++|+++++ 
T Consensus        69 ~~~gla~~~------dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------------~~~~n~i~~~~~-  123 (302)
T d2p4oa1          69 KVSGLAFTS------NGDLVATGWNADSIPVVSLVKSDGTVETLLTL-----PD-------------AIFLNGITPLSD-  123 (302)
T ss_dssp             EEEEEEECT------TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-----TT-------------CSCEEEEEESSS-
T ss_pred             CcceEEEcC------CCCeEEEecCCceEEEEEecccccceeecccc-----CC-------------ccccceeEEccC-
Confidence            456677763      34588888777777666654322  1111110     00             012567998875 


Q ss_pred             CCCceeEEEeeCCCcceEeeechh------hcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEE
Q psy731          341 RDNFRVMYFHPLASTTEFAVTTKV------LQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVG  414 (494)
Q Consensus       341 ~~g~r~LYf~plss~~ly~V~T~~------L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~  414 (494)
                          ..+|+.-....++|++...-      +.+...     ..    ....+......|++.|  .+.+|+++...+.|.
T Consensus       124 ----g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~  188 (302)
T d2p4oa1         124 ----TQYLTADSYRGAIWLIDVVQPSGSIWLEHPML-----AR----SNSESVFPAANGLKRF--GNFLYVSNTEKMLLL  188 (302)
T ss_dssp             ----SEEEEEETTTTEEEEEETTTTEEEEEEECGGG-----SC----SSTTCCSCSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             ----CCEEeeccccccceeeeccCCcceeEecCCcc-----ce----eeccCccccccccccc--CCceeeecCCCCeEE
Confidence                37888777777888775321      111110     00    0011112345677777  578999999999999


Q ss_pred             EEeCCCCccccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          415 CWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       415 ~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      +++.+.  .-...+..+...    ...|++|.+|.+|.|||..
T Consensus       189 ~~~~~~--~~~~~~~~~~~~----~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         189 RIPVDS--TDKPGEPEIFVE----QTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEEBCT--TSCBCCCEEEEE----SCCCSSEEEBTTCCEEEEC
T ss_pred             eccccc--cccccccccccC----CCCCcceEECCCCCEEEEE
Confidence            999876  211122333322    3569999999999999996

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.53  E-value=5.8e-07  Score=87.44  Aligned_cols=204  Identities=14%  Similarity=0.096  Sum_probs=121.1

Q ss_pred             CccceEEEeecCCCCCcEEEEeeCCC-------CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeeccccc
Q psy731          185 KFSNMVVDVTSANCDNAFLYIADSGH-------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTD  257 (494)
Q Consensus       185 ~l~d~vVD~~~~~c~~~~vYItDs~~-------~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~  257 (494)
                      +...+++|      .++.+|++|...       +.|..||..++....+....                          .
T Consensus        19 g~EGpa~d------~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~--------------------------~   66 (314)
T d1pjxa_          19 GAEGPVFD------KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE--------------------------V   66 (314)
T ss_dssp             TCEEEEEC------TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE--------------------------E
T ss_pred             CCeEeEEe------CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCc--------------------------c
Confidence            34567776      467899998765       34888888888776663211                          1


Q ss_pred             ccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeec
Q psy731          258 YTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLS  337 (494)
Q Consensus       258 ~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLs  337 (494)
                      .......+.|++|.     +...+|++|. .++|.++|..++....+....            +|.++.   +.+.++++
T Consensus        67 ~~~~g~P~Gl~~~~-----dg~~l~vad~-~~~i~~~~~~g~~~~~~~~~~------------~g~~~~---~pndl~~d  125 (314)
T d1pjxa_          67 NGYGGIPAGCQCDR-----DANQLFVADM-RLGLLVVQTDGTFEEIAKKDS------------EGRRMQ---GCNDCAFD  125 (314)
T ss_dssp             TTEECCEEEEEECS-----SSSEEEEEET-TTEEEEEETTSCEEECCSBCT------------TSCBCB---CCCEEEEC
T ss_pred             ccCCCcceeEEEeC-----CCCEEEEEEC-CCeEEEEeCCCcEEEEEeccc------------cccccC---CCcEEEEC
Confidence            11223467788884     3467999996 468999998776543332221            122222   34568887


Q ss_pred             cCCCCCceeEEEeeCCCc---------------ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCC--
Q psy731          338 PLTRDNFRVMYFHPLAST---------------TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEET--  400 (494)
Q Consensus       338 p~~~~g~r~LYf~plss~---------------~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~--  400 (494)
                      ++   |  .|||..+++.               .+|++..    +.        +..+....   ...+.|+++++..  
T Consensus       126 ~~---G--~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~----dg--------~~~~~~~~---~~~pNGi~~~~d~d~  185 (314)
T d1pjxa_         126 YE---G--NLWITAPAGEVAPADYTRSMQEKFGSIYCFTT----DG--------QMIQVDTA---FQFPNGIAVRHMNDG  185 (314)
T ss_dssp             TT---S--CEEEEECBCBCTTSCCCBTTSSSCEEEEEECT----TS--------CEEEEEEE---ESSEEEEEEEECTTS
T ss_pred             CC---C--CEEEecCccCcccccccceeccCCceEEEEee----cC--------ceeEeeCC---cceeeeeEECCCCCc
Confidence            75   3  8999876542               2333211    00        11111221   1234578886321  


Q ss_pred             --CeEEEeccCCCeEEEEeCCCCccccccceeeeeec-CCeEecccceEEcCCceEEEEe---cCchhh
Q psy731          401 --GVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAED-NATLIYPSDIRVDRTGVLWVLS---NKLPVF  463 (494)
Q Consensus       401 --G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d-~~~l~~pd~~~id~~g~Lwvls---nrl~~~  463 (494)
                        +.||+++...+.|.+++.+.  +-...+.++.+.- ....-.||||.+|.+|+|||..   +++.+|
T Consensus       186 ~~~~lyv~d~~~~~i~~~d~~~--~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         186 RPYQLIVAETPTKKLWSYDIKG--PAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEE--TTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             ceeEEEEEeecccceEEeeccC--ccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence              26999999999999998543  2111233333321 1223469999999999999985   556554

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.30  E-value=0.00032  Score=63.19  Aligned_cols=77  Identities=12%  Similarity=0.126  Sum_probs=59.8

Q ss_pred             EeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          129 VVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       129 V~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      +.++.++++++ |+|-+.+..        +|.+||+.+++.++++....        ....+.++     .+..++|++.
T Consensus        34 p~~va~spdG~~l~v~~~~~~--------~i~v~d~~t~~~~~~~~~~~--------~~~~~~~~-----~~~~~~~~~~   92 (301)
T d1l0qa2          34 PMGAVISPDGTKVYVANAHSN--------DVSIIDTATNNVIATVPAGS--------SPQGVAVS-----PDGKQVYVTN   92 (301)
T ss_dssp             EEEEEECTTSSEEEEEEGGGT--------EEEEEETTTTEEEEEEECSS--------SEEEEEEC-----TTSSEEEEEE
T ss_pred             ceEEEEeCCCCEEEEEECCCC--------EEEEEECCCCceeeeeeccc--------cccccccc-----cccccccccc
Confidence            56788998875 778777665        89999999999999887544        22344443     2678899999


Q ss_pred             CCCCeEEEEEccCCceeEE
Q psy731          208 SGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv  226 (494)
                      .....+.++|..+++.-+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          93 MASSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEE
T ss_pred             cccceeeecccccceeeee
Confidence            9999999999999875444

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=3.1e-05  Score=74.13  Aligned_cols=189  Identities=8%  Similarity=0.028  Sum_probs=114.1

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      .++.+|.+|...+.|..||.+++....+.                        +        ......++.+.      +
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g~~~~~~------------------------~--------~~~~~~i~~~~------d   69 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASGRKTVHA------------------------L--------PFMGSALAKIS------D   69 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEE------------------------C--------SSCEEEEEEEE------T
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeEEEEE------------------------C--------CCCcEEEEEec------C
Confidence            57788999999999999999988765441                        1        11234555553      3


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC----
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS----  354 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss----  354 (494)
                      +-++++.  ..||++||.++++...+.... ...|        +      ...+.+++.|+   |  .+||..+..    
T Consensus        70 g~l~va~--~~gl~~~d~~tg~~~~l~~~~-~~~~--------~------~~~nd~~vd~~---G--~iw~~~~~~~~~~  127 (295)
T d2ghsa1          70 SKQLIAS--DDGLFLRDTATGVLTLHAELE-SDLP--------G------NRSNDGRMHPS---G--ALWIGTMGRKAET  127 (295)
T ss_dssp             TEEEEEE--TTEEEEEETTTCCEEEEECSS-TTCT--------T------EEEEEEEECTT---S--CEEEEEEETTCCT
T ss_pred             CCEEEEE--eCccEEeecccceeeEEeeee-cCCC--------c------ccceeeEECCC---C--CEEEEeccccccc
Confidence            4556664  579999999999866554321 0001        0      11344667664   3  688876532    


Q ss_pred             --cceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeee
Q psy731          355 --TTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLV  432 (494)
Q Consensus       355 --~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v  432 (494)
                        ..+|+++...+             .+....-   ..+.|++.++....+|+++...+.|.+++.+...........+.
T Consensus       128 ~~g~l~~~~~g~~-------------~~~~~~~---~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~  191 (295)
T d2ghsa1         128 GAGSIYHVAKGKV-------------TKLFADI---SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF  191 (295)
T ss_dssp             TCEEEEEEETTEE-------------EEEEEEE---SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE
T ss_pred             cceeEeeecCCcE-------------EEEeecc---CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE
Confidence              13444422111             1111221   34678999966668999999999999998653101110112233


Q ss_pred             eecCCeEecccceEEcCCceEEEEe---cCchhh
Q psy731          433 AEDNATLIYPSDIRVDRTGVLWVLS---NKLPVF  463 (494)
Q Consensus       433 ~~d~~~l~~pd~~~id~~g~Lwvls---nrl~~~  463 (494)
                      +.-+.....|||+.+|.+|+|||..   .++.+|
T Consensus       192 ~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~  225 (295)
T d2ghsa1         192 IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRY  225 (295)
T ss_dssp             EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred             eccCcccccccceEEcCCCCEEeeeeCCCceEEe
Confidence            3333344689999999999999984   445444

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.14  E-value=0.00075  Score=61.38  Aligned_cols=60  Identities=10%  Similarity=0.051  Sum_probs=49.7

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv  226 (494)
                      +|.+||++++++++++.++.     .......+++.     .++.++|++.+..+.|.|||+.+++.-+.
T Consensus        12 ~v~v~D~~s~~~~~~i~~~~-----~~~~~~~i~~s-----pDg~~l~v~~~~~~~v~v~D~~t~~~~~~   71 (337)
T d1pbyb_          12 KLVVIDTEKMAVDKVITIAD-----AGPTPMVPMVA-----PGGRIAYATVNKSESLVKIDLVTGETLGR   71 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTT-----CTTCCCCEEEC-----TTSSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCeEEEEEECCC-----CCCCccEEEEC-----CCCCEEEEEECCCCeEEEEECCCCcEEEE
Confidence            88999999999999999887     34445667774     36789999999999999999999987544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=0.0013  Score=60.18  Aligned_cols=250  Identities=10%  Similarity=0.087  Sum_probs=138.0

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCc----EEEEEEcCCCccccccCCccceEEEeecCCCCCcE
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQM----QIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~----vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      .|+.+.+.++++ |+|......        .|.+|++.++.    +.......        .....+.++     .+..+
T Consensus        38 ~v~~la~spDG~~L~v~~~~d~--------~i~~~~i~~~~~~~~~~~~~~~~--------~~p~~l~~s-----pDg~~   96 (333)
T d1ri6a_          38 QVQPMVVSPDKRYLYVGVRPEF--------RVLAYRIAPDDGALTFAAESALP--------GSLTHISTD-----HQGQF   96 (333)
T ss_dssp             CCCCEEECTTSSEEEEEETTTT--------EEEEEEECTTTCCEEEEEEEECS--------SCCSEEEEC-----TTSSE
T ss_pred             CEeEEEEeCCCCEEEEEECCCC--------eEEEEEEeCCCCcEEEeeecccC--------CCceEEEEc-----CCCCE
Confidence            356777888875 777765444        57777766542    22222222        223445554     26789


Q ss_pred             EEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEE
Q psy731          203 LYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLY  282 (494)
Q Consensus       203 vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~Y  282 (494)
                      +|+++.....+.+|+...+..........                            .......+.+..     +..++|
T Consensus        97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~v~~s~-----d~~~~~  143 (333)
T d1ri6a_          97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVE----------------------------GLDGCHSANISP-----DNRTLW  143 (333)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEEC----------------------------CCTTBCCCEECT-----TSSEEE
T ss_pred             EeecccCCCceeeeccccccceecccccC----------------------------CCccceEEEeee-----cceeee
Confidence            99999999999999988887766521111                            111123334432     467889


Q ss_pred             EecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeec
Q psy731          283 IADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTT  362 (494)
Q Consensus       283 I~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T  362 (494)
                      ..+.....|.+|+..++.............+             ...+...|+++++    ...+|.....+... .+..
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~g~~p~~i~~~~~----~~~~~~~~~~~~~~-~v~~  205 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTV-------------EGAGPRHMVFHPN----EQYAYCVNELNSSV-DVWE  205 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECS-------------TTCCEEEEEECTT----SSEEEEEETTTTEE-EEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeee-------------cCCCccEEEEecc----ceeEEeeccccCce-EEEe
Confidence            9998888899999887665444322111101             0122345888876    35677766555332 2322


Q ss_pred             hhhcCCCcCccccccceEEeccc-CCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEec
Q psy731          363 KVLQNRSLDFSRSNFDFKVMGSR-GTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIY  441 (494)
Q Consensus       363 ~~L~~~~~~~~~~~~~v~~~G~~-G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~  441 (494)
                      -......+..   ...+...... .......++++++....+|.+....+.+.+|+.+.....    ..+.... ..-.+
T Consensus       206 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~  277 (333)
T d1ri6a_         206 LKDPHGNIEC---VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSV----LSKEGFQ-PTETQ  277 (333)
T ss_dssp             SSCTTSCCEE---EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC----EEEEEEE-ECSSS
T ss_pred             ecccccceee---eeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCE----EEEEEEe-CCCCC
Confidence            2222211110   0111111111 011233456777444478888888899999887541121    1222221 22257


Q ss_pred             ccceEEcCCce-EEEEe
Q psy731          442 PSDIRVDRTGV-LWVLS  457 (494)
Q Consensus       442 pd~~~id~~g~-Lwvls  457 (494)
                      |.++.+++||. |||..
T Consensus       278 p~~~a~spDGk~l~va~  294 (333)
T d1ri6a_         278 PRGFNVDHSGKYLIAAG  294 (333)
T ss_dssp             CCCEEECTTSSEEEEEC
T ss_pred             eeEEEEeCCCCEEEEEE
Confidence            99999999995 77653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.84  E-value=0.00044  Score=63.24  Aligned_cols=73  Identities=11%  Similarity=0.079  Sum_probs=55.8

Q ss_pred             EcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeE
Q psy731          134 SDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHI  213 (494)
Q Consensus       134 iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~i  213 (494)
                      +...++.++.=....        +|.+||++|+++++++.+|..      .....+++.     .++.++|+++...+.|
T Consensus         4 ~~~~~~~l~~~~~~~--------~v~v~D~~t~~~~~t~~~~~~------~~p~~l~~s-----pDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPN--------NLHVVDVASDTVYKSCVMPDK------FGPGTAMMA-----PDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCTTCEEEEEEETTT--------EEEEEETTTTEEEEEEECSSC------CSSCEEEEC-----TTSSEEEEEETTTTEE
T ss_pred             CCCCCcEEEEEcCCC--------EEEEEECCCCCEEEEEEcCCC------CCcceEEEC-----CCCCEEEEEECCCCcE
Confidence            345666666633333        899999999999999998861      234566663     2678999999999999


Q ss_pred             EEEEccCCceeE
Q psy731          214 VVYNYRTNDSHI  225 (494)
Q Consensus       214 IVyd~~~~~~~r  225 (494)
                      .+||+.+++.-+
T Consensus        65 ~~~d~~t~~~~~   76 (346)
T d1jmxb_          65 YGIDLDTCKNTF   76 (346)
T ss_dssp             EEEETTTTEEEE
T ss_pred             EEEeCccCeeee
Confidence            999999997654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=0.0036  Score=56.98  Aligned_cols=189  Identities=14%  Similarity=0.206  Sum_probs=109.8

Q ss_pred             EEEEEECCCC---cEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCce--eEEecCcc
Q psy731          157 SVQVYDLRQQ---MQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDS--HIIHHNYL  231 (494)
Q Consensus       157 klv~~dl~t~---~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~--~rv~~~~~  231 (494)
                      +|.+||++++   +++++++.+.        ..+.+++.     .++.++|++....++|.+|++..+..  ..+.+...
T Consensus        15 ~I~v~~~~~~~~l~~~~~~~~~~--------~v~~la~s-----pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_          15 QIHVWNLNHEGALTLTQVVDVPG--------QVQPMVVS-----PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEEECTTSCEEEEEEEECSS--------CCCCEEEC-----TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             cEEEEEEcCCCCeEEEEEEcCCC--------CEeEEEEe-----CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            6777777654   3455555444        35666664     37889999999999999999876543  22222111


Q ss_pred             ccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCccc
Q psy731          232 HFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHF  311 (494)
Q Consensus       232 ~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~  311 (494)
                                                   ......++++.     ++.++|+++..+..+.+|+.......+....... 
T Consensus        82 -----------------------------~~~p~~l~~sp-----Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~-  126 (333)
T d1ri6a_          82 -----------------------------PGSLTHISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-  126 (333)
T ss_dssp             -----------------------------SSCCSEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-
T ss_pred             -----------------------------CCCceEEEEcC-----CCCEEeecccCCCceeeeccccccceecccccCC-
Confidence                                         11233455553     4688999988888888888877665444322111 


Q ss_pred             CCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCC
Q psy731          312 DPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQS  391 (494)
Q Consensus       312 dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs  391 (494)
                                      ..++.+++++|+    ++.+|........+.......-...      ...... ..........
T Consensus       127 ----------------~~~~~~v~~s~d----~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~-~~~~~~g~~p  179 (333)
T d1ri6a_         127 ----------------LDGCHSANISPD----NRTLWVPALKQDRICLFTVSDDGHL------VAQDPA-EVTTVEGAGP  179 (333)
T ss_dssp             ----------------CTTBCCCEECTT----SSEEEEEEGGGTEEEEEEECTTSCE------EEEEEE-EEECSTTCCE
T ss_pred             ----------------CccceEEEeeec----ceeeeccccccceeeEEEeccCCcc------eeeece-eeeeecCCCc
Confidence                            134567889987    3677777666655443332111000      000000 0111111233


Q ss_pred             CeEEeeCCCCeEEEeccCCCeEEEEeCCC
Q psy731          392 GASSLDEETGVIFYALLVKSGVGCWNTFR  420 (494)
Q Consensus       392 ~g~~~D~~~G~ly~~~~~~~aI~~w~~~~  420 (494)
                      ..+++++....+|......+....|+...
T Consensus       180 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~  208 (333)
T d1ri6a_         180 RHMVFHPNEQYAYCVNELNSSVDVWELKD  208 (333)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             cEEEEeccceeEEeeccccCceEEEeecc
Confidence            56888865667778888888877777543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.69  E-value=0.0029  Score=62.79  Aligned_cols=196  Identities=8%  Similarity=0.022  Sum_probs=118.4

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  236 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~  236 (494)
                      ++..||+.|+++++++....        ....+++     ..+..++|++.. .+.+-+||+.+++.-.+..        
T Consensus        43 ~v~v~D~~t~~v~~~~~~g~--------~~~~v~f-----SpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~--------  100 (432)
T d1qksa2          43 QIALIDGSTYEIKTVLDTGY--------AVHISRL-----SASGRYLFVIGR-DGKVNMIDLWMKEPTTVAE--------  100 (432)
T ss_dssp             EEEEEETTTCCEEEEEECSS--------CEEEEEE-----CTTSCEEEEEET-TSEEEEEETTSSSCCEEEE--------
T ss_pred             EEEEEECCCCcEEEEEeCCC--------CeeEEEE-----CCCCCEEEEEcC-CCCEEEEEeeCCCceEEEE--------
Confidence            67788888888888876544        1233433     237899999964 5789999999887544410        


Q ss_pred             CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCc
Q psy731          237 FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFG  316 (494)
Q Consensus       237 ~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~  316 (494)
                                           ++......+++.... -.-++.++|++....+.+.+||.++++.-+........ ....
T Consensus       101 ---------------------i~~~~~~~~~~~s~~-~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~-~~~~  157 (432)
T d1qksa2         101 ---------------------IKIGSEARSIETSKM-EGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT-YDEQ  157 (432)
T ss_dssp             ---------------------EECCSEEEEEEECCS-TTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC-TTTC
T ss_pred             ---------------------EecCCCCCCeEEecc-cCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc-ccce
Confidence                                 111122333444321 11246789999988999999999999877664321110 0111


Q ss_pred             ceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEe
Q psy731          317 DFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSL  396 (494)
Q Consensus       317 ~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~  396 (494)
                             .+.......+|+.||+    ++.+|+.-.....+..+..+-.+..         .+..+. -|  ....++++
T Consensus       158 -------~~~~~~~~~~v~~s~d----g~~~~vs~~~~~~i~~~d~~~~~~~---------~~~~i~-~g--~~~~~~~~  214 (432)
T d1qksa2         158 -------EYHPEPRVAAILASHY----RPEFIVNVKETGKILLVDYTDLNNL---------KTTEIS-AE--RFLHDGGL  214 (432)
T ss_dssp             -------CEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEETTCSSEE---------EEEEEE-CC--SSEEEEEE
T ss_pred             -------eccCCCceeEEEECCC----CCEEEEEEccCCeEEEEEccCCCcc---------eEEEEc-cc--CccccceE
Confidence                   1111222456888886    2567776655556666654322111         111121 11  12457899


Q ss_pred             eCCCC-eEEEeccCCCeEEEEeCCCC
Q psy731          397 DEETG-VIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       397 D~~~G-~ly~~~~~~~aI~~w~~~~~  421 (494)
                      + .+| .+|.+....+.|..++.+++
T Consensus       215 s-pdg~~~~va~~~~~~v~v~d~~~~  239 (432)
T d1qksa2         215 D-GSHRYFITAANARNKLVVIDTKEG  239 (432)
T ss_dssp             C-TTSCEEEEEEGGGTEEEEEETTTT
T ss_pred             C-CCCCEEEEeccccceEEEeecccc
Confidence            9 566 58899999999999999873

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.65  E-value=0.012  Score=57.16  Aligned_cols=197  Identities=7%  Similarity=0.041  Sum_probs=116.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  236 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~  236 (494)
                      +|.+||+.|+++++++....        ....+++     ..+..++|++.. .+.+-|||+.+++.-.+.         
T Consensus        43 ~v~vwD~~t~~~~~~l~~g~--------~~~~vaf-----SPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~---------   99 (426)
T d1hzua2          43 QIALVDGDSKKIVKVIDTGY--------AVHISRM-----SASGRYLLVIGR-DARIDMIDLWAKEPTKVA---------   99 (426)
T ss_dssp             EEEEEETTTCSEEEEEECCS--------SEEEEEE-----CTTSCEEEEEET-TSEEEEEETTSSSCEEEE---------
T ss_pred             EEEEEECCCCcEEEEEeCCC--------CeeEEEE-----CCCCCEEEEEeC-CCCEEEEEccCCceeEEE---------
Confidence            67788888888888887554        1233443     236789999965 468999999998753331         


Q ss_pred             CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCc
Q psy731          237 FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFG  316 (494)
Q Consensus       237 ~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~  316 (494)
                                          .++......++++... -..++.++|++....+.+.++|.++++.-+........ .   
T Consensus       100 --------------------~i~~~~~~~~~~~s~~-~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~-~---  154 (426)
T d1hzua2         100 --------------------EIKIGIEARSVESSKF-KGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT-V---  154 (426)
T ss_dssp             --------------------EEECCSEEEEEEECCS-TTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC-S---
T ss_pred             --------------------EEeCCCCCcceEEeee-ecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC-c---
Confidence                                0111122344444432 12356788999888899999999999866654321110 0   


Q ss_pred             ceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEe
Q psy731          317 DFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSL  396 (494)
Q Consensus       317 ~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~  396 (494)
                          .+..+........++.+++    .+.+++.......+..+...-...         ..+...+. |  ....++++
T Consensus       155 ----~~~~~~~~~~~~~i~~s~d----~~~~~~~~~~~~~i~~~~~~~~~~---------~~~~~~~~-~--~~~~~~~~  214 (426)
T d1hzua2         155 ----DTQTYHPEPRVAAIIASHE----HPEFIVNVKETGKVLLVNYKDIDN---------LTVTSIGA-A--PFLADGGW  214 (426)
T ss_dssp             ----SSCCEESCCCEEEEEECSS----SSEEEEEETTTTEEEEEECSSSSS---------CEEEEEEC-C--SSEEEEEE
T ss_pred             ----cceeecCCCceeEEEECCC----CCEEEEecCCCCeEEEEEeccccc---------eeeEEecc-C--CccEeeeE
Confidence                1111211222345777776    356666555444444443322111         11222222 1  23567899


Q ss_pred             eCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          397 DEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       397 D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      ++....+|.+....+.+..++...+
T Consensus       215 ~~~g~~~~~a~~~~~~~~~~~~~~~  239 (426)
T d1hzua2         215 DSSHRYFMTAANNSNKVAVIDSKDR  239 (426)
T ss_dssp             CTTSCEEEEEETTCSEEEEEETTTT
T ss_pred             CCCCcEEEeeeecccceeeeecccc
Confidence            9555578888889999999998764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.62  E-value=0.00083  Score=65.53  Aligned_cols=192  Identities=11%  Similarity=0.002  Sum_probs=104.6

Q ss_pred             CCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCcee-EEecCccccCCCCCccccCCccceeeeecccccccccc
Q psy731          184 SKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSH-IIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEES  262 (494)
Q Consensus       184 S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~-rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s  262 (494)
                      ++.-.++++     .++.++|++|.+.+.|.+|+....... .... .                         ....+++
T Consensus       145 ~h~h~v~~s-----PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~-~-------------------------~~~~~g~  193 (365)
T d1jofa_         145 TGIHGMVFD-----PTETYLYSADLTANKLWTHRKLASGEVELVGS-V-------------------------DAPDPGD  193 (365)
T ss_dssp             CCEEEEEEC-----TTSSEEEEEETTTTEEEEEEECTTSCEEEEEE-E-------------------------ECSSTTC
T ss_pred             CcceEEEEC-----CCCCEEEEeeCCCCEEEEEEccCCCceeeccc-e-------------------------eecCCCC
Confidence            344455553     378999999999999999987654322 2211 0                         1223456


Q ss_pred             cceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEE-ecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731          263 KFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR  341 (494)
Q Consensus       263 ~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv-~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~  341 (494)
                      ....++++.     +..++|++....+.|.|||+.+++--.+ .+.....-+.... ......+.-..+...|+++|+  
T Consensus       194 gPr~i~f~p-----dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~spd--  265 (365)
T d1jofa_         194 HPRWVAMHP-----TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP-DRDPETGKGLYRADVCALTFS--  265 (365)
T ss_dssp             CEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC-CBCTTTSSBSEEEEEEEECTT--
T ss_pred             ceEEEEECC-----CCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccc-ccccccccccCCccceEECCC--
Confidence            777788864     4689999999999999999976643222 1111100000000 000001111223556999997  


Q ss_pred             CCceeEEEeeC--CCcceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEEeeCCCC-eEEEeccCCCeEEEEeC
Q psy731          342 DNFRVMYFHPL--ASTTEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETG-VIFYALLVKSGVGCWNT  418 (494)
Q Consensus       342 ~g~r~LYf~pl--ss~~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G-~ly~~~~~~~aI~~w~~  418 (494)
                        ++.||..--  .+.....|.+-.+.+..    .+..............+..+++++|.+| .||.+.-..+.|..|+.
T Consensus       266 --G~~lyvsnr~~~~~~~~~i~~~~~~~~g----~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         266 --GKYMFASSRANKFELQGYIAGFKLRDCG----SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             --SSEEEEEEEESSTTSCCEEEEEEECTTS----CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             --CCEEEEEcccCCCccceEEEEEEecCCC----ceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence              378998532  11122222221111110    1111111111111123467899986577 59999999999999876


Q ss_pred             CC
Q psy731          419 FR  420 (494)
Q Consensus       419 ~~  420 (494)
                      +.
T Consensus       340 ~~  341 (365)
T d1jofa_         340 KD  341 (365)
T ss_dssp             ET
T ss_pred             eC
Confidence            55

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.51  E-value=0.032  Score=54.15  Aligned_cols=124  Identities=14%  Similarity=0.179  Sum_probs=75.6

Q ss_pred             EeeEEE--cCCC--eEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEE
Q psy731          129 VVKVQS--DPCD--RLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLY  204 (494)
Q Consensus       129 V~~i~i--D~~~--~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vY  204 (494)
                      ..++.+  +.++  +|+|+.-.... .   .=++..++....++.++-.+..    .....+||+++.      +++-.|
T Consensus        99 PhGi~l~~~~dg~~~L~vvnH~~~~-~---~ieif~~~~~~~~l~~~~~v~~----~~~~~pNDv~~~------~~g~fy  164 (340)
T d1v04a_          99 PHGISTFIDDDNTVYLLVVNHPGSS-S---TVEVFKFQEEEKSLLHLKTIRH----KLLPSVNDIVAV------GPEHFY  164 (340)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTC-C---EEEEEEEETTTTEEEEEEEECC----TTCSSEEEEEEE------ETTEEE
T ss_pred             ccceeEEEcCCCcEEEEEEeccCCC-c---eeEEEEEeCCCCeEEEEeecCC----ccccCccceEEe------cCCCEE
Confidence            445433  4444  69999763221 1   1156666766666665555544    234568999987      466799


Q ss_pred             EeeCCC---------------CeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEE
Q psy731          205 IADSGH---------------NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVV  269 (494)
Q Consensus       205 ItDs~~---------------~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~V  269 (494)
                      +||...               +.--|+....+....+                               +....+.|+|++
T Consensus       165 ~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~-------------------------------~~~l~~pNGI~~  213 (340)
T d1v04a_         165 ATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV-------------------------------AEGFDFANGINI  213 (340)
T ss_dssp             EEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE-------------------------------EEEESSEEEEEE
T ss_pred             EecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE-------------------------------cCCCCccceeEE
Confidence            996421               1222333333333222                               122356788998


Q ss_pred             eeecCCCCCcEEEEecCCCCeEEEEEcCCCcEE
Q psy731          270 DVTSANCDDAFLYIADSGHNHIVVYNYRTNDSH  302 (494)
Q Consensus       270 D~~~~~c~~~~~YI~D~~~~gliVydl~~~~sw  302 (494)
                      +.     ++.++|+++.....|.+|+++.+.+-
T Consensus       214 s~-----d~~~lyVa~t~~~~i~~y~~~~~~~l  241 (340)
T d1v04a_         214 SP-----DGKYVYIAELLAHKIHVYEKHANWTL  241 (340)
T ss_dssp             CT-----TSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CC-----CCCEEEEEeCCCCeEEEEEeCCCccc
Confidence            73     46899999999999999999876643

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.33  E-value=0.015  Score=56.24  Aligned_cols=158  Identities=9%  Similarity=-0.019  Sum_probs=79.9

Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEee-CCCc
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHP-LAST  355 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~p-lss~  355 (494)
                      ++.++|++|.+...|.+|+......-........+.|              -.|--+|+++|+    ++.+|..- ++++
T Consensus       155 dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~--------------g~gPr~i~f~pd----g~~~yv~~e~~~~  216 (365)
T d1jofa_         155 TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP--------------GDHPRWVAMHPT----GNYLYALMEAGNR  216 (365)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST--------------TCCEEEEEECTT----SSEEEEEETTTTE
T ss_pred             CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC--------------CCceEEEEECCC----CceEEEeccCCCE
Confidence            5789999999888898887654332221111111111              135667999987    37888844 4443


Q ss_pred             -ceEeeechhhcCC----C--cCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCe-----EEEEeCCCCcc
Q psy731          356 -TEFAVTTKVLQNR----S--LDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSG-----VGCWNTFRGEE  423 (494)
Q Consensus       356 -~ly~V~T~~L~~~----~--~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~a-----I~~w~~~~~~~  423 (494)
                       ..|++.+..+..-    +  +..........  -.......+..++++|....||.+.-..+.     |..|+.+.--.
T Consensus       217 V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~  294 (365)
T d1jofa_         217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDP--ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS  294 (365)
T ss_dssp             EEEEEECTTTCCEEEEEEEEESSCTTCCCBCT--TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred             EEEEEecCCCceEEEEeeeecccccccccccc--ccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc
Confidence             3455543321100    0  00000000000  000001234578888544588988655444     77777543002


Q ss_pred             ccccceeeeeecCCeEecccceEEcC-Cc-eEEEE
Q psy731          424 YNEKSMGLVAEDNATLIYPSDIRVDR-TG-VLWVL  456 (494)
Q Consensus       424 ~~~~~~~~v~~d~~~l~~pd~~~id~-~g-~Lwvl  456 (494)
                      +.  ....+.+-...-.||-+|.+++ +| +|||.
T Consensus       295 ~~--~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va  327 (365)
T d1jofa_         295 IE--KQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT  327 (365)
T ss_dssp             EE--EEEEEEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred             ee--eEeEeeEEEcCCCCccEEEecCCCCCEEEEE
Confidence            21  1122223223446999999985 66 57776

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.22  E-value=0.035  Score=49.75  Aligned_cols=84  Identities=15%  Similarity=0.107  Sum_probs=58.7

Q ss_pred             EEeeEEEcCCCe-EEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          128 SVVKVQSDPCDR-LWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       128 sV~~i~iD~~~~-LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      .+..+.+.++++ |||...+..        +|.+||+.|+++++++..+.  ..........+++.     .+..++|++
T Consensus        35 ~~~~i~~spDg~~l~v~~~~~~--------~v~v~D~~t~~~~~~~~~~~--~~~~~~~~~~v~~s-----~dg~~l~~~   99 (337)
T d1pbyb_          35 TPMVPMVAPGGRIAYATVNKSE--------SLVKIDLVTGETLGRIDLST--PEERVKSLFGAALS-----PDGKTLAIY   99 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTT--------EEEEEETTTCCEEEEEECCB--TTEEEECTTCEEEC-----TTSSEEEEE
T ss_pred             CccEEEECCCCCEEEEEECCCC--------eEEEEECCCCcEEEEEecCC--CcccccceeeEEEc-----CCCcEEEEe
Confidence            345677888876 677776655        89999999999999998876  22223344455553     256777777


Q ss_pred             eC-----------CCCeEEEEEccCCceeEE
Q psy731          207 DS-----------GHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       207 Ds-----------~~~~iIVyd~~~~~~~rv  226 (494)
                      ..           +...+.++|..++...+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (337)
T d1pbyb_         100 ESPVRLELTHFEVQPTRVALYDAETLSRRKA  130 (337)
T ss_dssp             EEEEEECSSCEEECCCEEEEEETTTTEEEEE
T ss_pred             ecCCcceeeeccccccceeeccccCCeEEEe
Confidence            54           446788888888876555

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.17  E-value=0.0029  Score=60.09  Aligned_cols=89  Identities=9%  Similarity=0.060  Sum_probs=59.5

Q ss_pred             EEEcCCC-eEEEEeCCCCCCCCCC--CCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          132 VQSDPCD-RLWALDSGVVEGKMEQ--PPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       132 i~iD~~~-~LwvlD~G~~~~~~~~--~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      +..-.++ .||+...+... ...+  .=.|..||+.|++++.++.+|.............+++.     .+..++|+++.
T Consensus        70 ~a~spDg~~i~~~~~~~~~-~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~S-----pDGk~l~va~~  143 (368)
T d1mdah_          70 AVAGHSGSDFALASTSFAR-SAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNC-----ASSACLLFFLF  143 (368)
T ss_dssp             EEECTTSSCEEEEEEEETT-TTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEEC-----TTSSCEEEEEC
T ss_pred             ceECCCCCEEEEEcccCcc-ccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEEC-----CCCCEEEEEeC
Confidence            3344555 47776543321 0011  11588999999999999998873333333344556653     36789999999


Q ss_pred             CCCeEEEEEccCCceeEE
Q psy731          209 GHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv  226 (494)
                      ..+.+.++|+.+++.-+.
T Consensus       144 ~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         144 GSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             SSSCEEEEEETTTEEEEE
T ss_pred             CCCeEEEEECCCCcEeEE
Confidence            999999999999987665

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.03  E-value=0.0091  Score=58.16  Aligned_cols=153  Identities=12%  Similarity=0.135  Sum_probs=81.6

Q ss_pred             CcEEEEecC--CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCC-C
Q psy731          278 DAFLYIADS--GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLA-S  354 (494)
Q Consensus       278 ~~~~YI~D~--~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~pls-s  354 (494)
                      ..++|+.+-  ....|-+|++..+ +|+..|.....+|..             ...+.|++..+     ..+||+-.. .
T Consensus       111 ~~~L~vvnH~~~~~~ieif~~~~~-~~~l~~~~~v~~~~~-------------~~pNDv~~~~~-----g~fy~Tnd~~~  171 (340)
T d1v04a_         111 TVYLLVVNHPGSSSTVEVFKFQEE-EKSLLHLKTIRHKLL-------------PSVNDIVAVGP-----EHFYATNDHYF  171 (340)
T ss_dssp             CEEEEEEECSTTCCEEEEEEEETT-TTEEEEEEEECCTTC-------------SSEEEEEEEET-----TEEEEEESCSC
T ss_pred             cEEEEEEeccCCCceeEEEEEeCC-CCeEEEEeecCCccc-------------cCccceEEecC-----CCEEEecCccC
Confidence            446666654  3456778877644 345555433333322             12455777643     368886221 1


Q ss_pred             cceEeeech-hhcCCCcCc-cccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeee
Q psy731          355 TTEFAVTTK-VLQNRSLDF-SRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLV  432 (494)
Q Consensus       355 ~~ly~V~T~-~L~~~~~~~-~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v  432 (494)
                      ..-+.-..+ .|.-+.-.- .--...++.+.+.  ...+-|+++++....||+++.....|.+++-++  +   ......
T Consensus       172 ~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~--l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~--~---~~l~~~  244 (340)
T d1v04a_         172 IDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHA--N---WTLTPL  244 (340)
T ss_dssp             CSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT--T---SCEEEE
T ss_pred             cChhhhhhhHhhcCCceeEEEEcCCceEEEcCC--CCccceeEECCCCCEEEEEeCCCCeEEEEEeCC--C---cccceE
Confidence            111110011 111111000 0001334555543  256789999966669999999999999887764  2   111221


Q ss_pred             eecCCeEecccceEEcC-CceEEEEe
Q psy731          433 AEDNATLIYPSDIRVDR-TGVLWVLS  457 (494)
Q Consensus       433 ~~d~~~l~~pd~~~id~-~g~Lwvls  457 (494)
                      ... ..-..||.+.+|. +|.+|+.+
T Consensus       245 ~~~-~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         245 RVL-SFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             EEe-cCCCCCCccEEecCCCEEEEEE
Confidence            111 1124699999985 78999997

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.76  E-value=0.05  Score=54.90  Aligned_cols=65  Identities=11%  Similarity=0.015  Sum_probs=41.8

Q ss_pred             CCeEEeeCCCCeEEEeccCCCeEEEEeCCCCc-----cccccceeeeeecCCeEecccceEEcCCceEEEEe
Q psy731          391 SGASSLDEETGVIFYALLVKSGVGCWNTFRGE-----EYNEKSMGLVAEDNATLIYPSDIRVDRTGVLWVLS  457 (494)
Q Consensus       391 s~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~-----~~~~~~~~~v~~d~~~l~~pd~~~id~~g~Lwvls  457 (494)
                      ..|+.++|....+|.+.-..+.|..||.++.+     ...++ -.++++ .+.-.-|-+-.+|.+|+.|.+.
T Consensus       260 PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~-~~~~~~-~~~glgplh~~fd~~g~~yts~  329 (441)
T d1qnia2         260 PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELR-DTIVAE-PELGLGPLHTTFDGRGNAYTTL  329 (441)
T ss_dssp             CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGG-GGEEEC-CBCCSCEEEEEECSSSEEEEEE
T ss_pred             ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcc-eEEEee-cccccCcccceecCCceEEEcc
Confidence            57899995444688999999999999986521     11111 123333 2222346666889999998763

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.69  E-value=0.15  Score=46.38  Aligned_cols=211  Identities=11%  Similarity=-0.089  Sum_probs=112.2

Q ss_pred             CeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC--------
Q psy731          138 DRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG--------  209 (494)
Q Consensus       138 ~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~--------  209 (494)
                      .++||.|.+...    ....+.+||+.++++++++....         ...+++.     .+..++|+++..        
T Consensus        14 ~~~~v~~~~~~~----~~~~v~v~D~~tg~~~~~~~~g~---------~~~~a~S-----pDg~~l~v~~~~~~~~~~g~   75 (355)
T d2bbkh_          14 RRVYVNDPAHFA----AVTQQFVIDGEAGRVIGMIDGGF---------LPNPVVA-----DDGSFIAHASTVFSRIARGE   75 (355)
T ss_dssp             TEEEEEECGGGC----SSEEEEEEETTTTEEEEEEEECS---------SCEEEEC-----TTSSCEEEEEEEEEETTEEE
T ss_pred             CEEEEEecccCC----CcCeEEEEECCCCcEEEEEECCC---------CCceEEc-----CCCCEEEEEeCCCccccccC
Confidence            367777665431    12368888999999888776433         1134442     266789998753        


Q ss_pred             -CCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC-
Q psy731          210 -HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG-  287 (494)
Q Consensus       210 -~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~-  287 (494)
                       .+.|.|||+.+++..+.-....  .                     ....-......+++.     ++..++|+++.. 
T Consensus        76 ~d~~v~v~D~~t~~~~~~~~~~~--~---------------------~~~~~~~~~~~~~~s-----~dg~~~~v~~~~~  127 (355)
T d2bbkh_          76 RTDYVEVFDPVTLLPTADIELPD--A---------------------PRFLVGTYPWMTSLT-----PDGKTLLFYQFSP  127 (355)
T ss_dssp             EEEEEEEECTTTCCEEEEEEETT--C---------------------CCCCBSCCGGGEEEC-----TTSSEEEEEECSS
T ss_pred             CCCEEEEEECCCCCEEEEEecCC--c---------------------ceeecCCCCceEEEe-----cCCCeeEEecCCC
Confidence             3569999999998766511000  0                     000111112334443     356788888755 


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN  367 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~  367 (494)
                      ...+.++|..+++.-+.....     ..       ...........++++++    ++.+|+..........+.++....
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~d----g~~~~v~~~~~~~~~~~~~~~~~~  191 (355)
T d2bbkh_         128 APAVGVVDLEGKAFKRMLDVP-----DC-------YHIFPTAPDTFFMHCRD----GSLAKVAFGTEGTPEITHTEVFHP  191 (355)
T ss_dssp             SCEEEEEETTTTEEEEEEECC-----SE-------EEEEEEETTEEEEEETT----SCEEEEECCSSSCCEEEECCCCSC
T ss_pred             CceeeeeecCCCcEeeEEecC-----Cc-------ceEeecCCcceEEEcCC----CCEEEEEecCCCeEEEEecccccc
Confidence            456778999888765543210     00       00111222344778876    367777554444444443333222


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCC
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTF  419 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~  419 (494)
                      ....   ....... .     +....++..+..|.+|..++..+.+.++++.
T Consensus       192 ~~~~---~~~~~~~-~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         192 EDEF---LINHPAY-S-----QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             TTSC---BCSCCEE-E-----TTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             eecc---eeeeccc-c-----CCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            1110   0011111 1     1122333333678888888888877776654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=96.47  E-value=0.31  Score=44.57  Aligned_cols=31  Identities=0%  Similarity=-0.163  Sum_probs=24.8

Q ss_pred             CCcEEEEecCCCCeEEEEEcCCCcEEEEecC
Q psy731          277 DDAFLYIADSGHNHIVVYNYRTNDSHIIHHN  307 (494)
Q Consensus       277 ~~~~~YI~D~~~~gliVydl~~~~swrv~~~  307 (494)
                      +...+|++...+..+.++|..+++..+....
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~  205 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVG  205 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEee
Confidence            3567889888889999999999887776543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=96.33  E-value=0.08  Score=47.43  Aligned_cols=101  Identities=9%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ++.|++++... +.|.|||+++++..+.-                       +      +........+++..     ++
T Consensus         7 ~~~~l~~~~~~-~~v~v~D~~t~~~~~t~-----------------------~------~~~~~~p~~l~~sp-----DG   51 (346)
T d1jmxb_           7 GHEYMIVTNYP-NNLHVVDVASDTVYKSC-----------------------V------MPDKFGPGTAMMAP-----DN   51 (346)
T ss_dssp             TCEEEEEEETT-TEEEEEETTTTEEEEEE-----------------------E------CSSCCSSCEEEECT-----TS
T ss_pred             CCcEEEEEcCC-CEEEEEECCCCCEEEEE-----------------------E------cCCCCCcceEEECC-----CC
Confidence            45666666554 68999999999876541                       0      11112234555542     46


Q ss_pred             cEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEee
Q psy731          279 AFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHP  351 (494)
Q Consensus       279 ~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~p  351 (494)
                      .++|+++..++.|.+||+.+++.-+-........             .......++++||++    +.||...
T Consensus        52 ~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-------------~~~~~~~~v~~s~DG----~~l~v~~  107 (346)
T d1jmxb_          52 RTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG-------------EVGRSMYSFAISPDG----KEVYATV  107 (346)
T ss_dssp             SEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT-------------EEEECSSCEEECTTS----SEEEEEE
T ss_pred             CEEEEEECCCCcEEEEeCccCeeeeeeccccccc-------------ccCCceEEEEEecCC----CEEEEEe
Confidence            8999999989999999999886543222211100             011235679999973    6888753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=96.13  E-value=0.11  Score=52.32  Aligned_cols=123  Identities=17%  Similarity=0.203  Sum_probs=67.9

Q ss_pred             ceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC---CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEe
Q psy731          330 GIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN---RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYA  406 (494)
Q Consensus       330 Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~---~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~  406 (494)
                      +-.|+++|||    ++++|..---+.+.--+..+-|++   ..+..   ...+.-.-+-|. + .-..++| .+|+.|-+
T Consensus       259 sPhGv~vSPD----Gkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~---~~~~~~~~~~gl-g-plh~~fd-~~g~~yts  328 (441)
T d1qnia2         259 NPHGLNTSPD----GKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL---RDTIVAEPELGL-G-PLHTTFD-GRGNAYTT  328 (441)
T ss_dssp             SCCCEEECTT----SCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG---GGGEEECCBCCS-C-EEEEEEC-SSSEEEEE
T ss_pred             CccCceECCC----CCEEEEeCCcCCcEEEEEeehhhhHhhccCCc---ceEEEeeccccc-C-cccceec-CCceEEEc
Confidence            3577999998    379998655555555555544442   11111   111111111221 1 1235789 79999999


Q ss_pred             ccCCCeEEEEeCCCCc-cccccceeeeee------cCCeEecccceEEcCCceEEEEecCchh
Q psy731          407 LLVKSGVGCWNTFRGE-EYNEKSMGLVAE------DNATLIYPSDIRVDRTGVLWVLSNKLPV  462 (494)
Q Consensus       407 ~~~~~aI~~w~~~~~~-~~~~~~~~~v~~------d~~~l~~pd~~~id~~g~Lwvlsnrl~~  462 (494)
                      ..-.+.|..||..... .|..+....+.+      ...-+.-+-+.++.++|.-.+.-|+|-+
T Consensus       329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~  391 (441)
T d1qnia2         329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSK  391 (441)
T ss_dssp             ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCG
T ss_pred             ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccc
Confidence            9999999999964310 111111111111      1233444555566788976666788864

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.12  E-value=0.079  Score=53.05  Aligned_cols=171  Identities=13%  Similarity=0.128  Sum_probs=93.0

Q ss_pred             ccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCC
Q psy731          262 SKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTR  341 (494)
Q Consensus       262 s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~  341 (494)
                      .....|++..      ++-+||+.-....|.+++.+++....+.+-.-....      ..     ...|+.|||+.|+-.
T Consensus        27 ~~P~~la~~p------dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~------~~-----ge~GLLgia~~Pdf~   89 (450)
T d1crua_          27 NKPHALLWGP------DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVND------AD-----GQNGLLGFAFHPDFK   89 (450)
T ss_dssp             SSEEEEEECT------TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCC------TT-----SSCSEEEEEECTTTT
T ss_pred             CCceEEEEeC------CCeEEEEEecCCEEEEEECCCCcEeecccCCccccc------cC-----CCCceeeEEeCCCCc
Confidence            4455666652      456888875455688888888888777653211100      01     235899999999643


Q ss_pred             CCceeEEEeeCC-----Cc----ceEeeechhhcCCCc-CccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccC--
Q psy731          342 DNFRVMYFHPLA-----ST----TEFAVTTKVLQNRSL-DFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLV--  409 (494)
Q Consensus       342 ~g~r~LYf~pls-----s~----~ly~V~T~~L~~~~~-~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~--  409 (494)
                      . +.++|+....     +.    ....+. +.+.+... .......-+..+... ..-..+.++++ .+|.||++.=+  
T Consensus        90 ~-n~~iYvsyt~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~i~~~~p~~-~~H~gg~l~fg-pDG~LYvs~Gd~~  165 (450)
T d1crua_          90 N-NPYIYISGTFKNPKSTDKELPNQTIIR-RYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIG-PDQKIYYTIGDQG  165 (450)
T ss_dssp             T-SCEEEEEEEEECTTC--CCSCEEEEEE-EEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEEC-TTSCEEEEECCTT
T ss_pred             c-CCEEEEEEecCCCCCcccccccceEEE-eeecccccccccceEEEeeccccc-ccccccceeEc-CCCCEEEEecCCC
Confidence            3 4788874320     00    111111 11112111 111000111111111 12446789999 79999997543  


Q ss_pred             ------------------------------CCeEEEEeCCCCccccccce-------eeeeecCCeEecccceEEcCCce
Q psy731          410 ------------------------------KSGVGCWNTFRGEEYNEKSM-------GLVAEDNATLIYPSDIRVDRTGV  452 (494)
Q Consensus       410 ------------------------------~~aI~~w~~~~~~~~~~~~~-------~~v~~d~~~l~~pd~~~id~~g~  452 (494)
                                                    ..+|.+.++++.  .-+.|-       ++.+..   ++=|-++.++++|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~--~~~dnP~~~~~~~ei~a~G---~RNp~g~~~~p~g~  240 (450)
T d1crua_         166 RNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGS--IPKDNPSFNGVVSHIYTLG---HRNPQGLAFTPNGK  240 (450)
T ss_dssp             TTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSC--CCTTCCEETTEECSEEEBC---CSEEEEEEECTTSC
T ss_pred             cccccccccccccccCcccccccccccccccCceEEeecccc--ccccccccccccceEEEec---cccccceeecccce
Confidence                                          357889988763  211121       233322   33466788999999


Q ss_pred             EEEEec
Q psy731          453 LWVLSN  458 (494)
Q Consensus       453 Lwvlsn  458 (494)
                      ||+.-+
T Consensus       241 l~~~e~  246 (450)
T d1crua_         241 LLQSEQ  246 (450)
T ss_dssp             EEEEEE
T ss_pred             eeeccc
Confidence            999854

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.93  E-value=0.61  Score=45.29  Aligned_cols=73  Identities=16%  Similarity=0.202  Sum_probs=42.5

Q ss_pred             CCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeee-ecCCeE-ecccceEE----cCCceEEEEe---c
Q psy731          388 GSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVA-EDNATL-IYPSDIRV----DRTGVLWVLS---N  458 (494)
Q Consensus       388 ~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~-~d~~~l-~~pd~~~i----d~~g~Lwvls---n  458 (494)
                      .+|+-|+++|.++|.||+++-+ -+|++.+.+-  .-. ..-.++. .+...| .=|.|++|    +.+|+|.+++   |
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~-~Giw~~~a~~--~~~-~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n  254 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEED-EAIWKFSAEP--DGG-SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNS  254 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETT-TEEEEEESST--TSC-SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             CCccceEEEeCCCCcEEEecCc-cceEEEEecc--CCC-ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCC
Confidence            3789999999899999999875 5787776542  111 1112221 221111 11446665    3466777765   5


Q ss_pred             Cchhhh
Q psy731          459 KLPVFL  464 (494)
Q Consensus       459 rl~~~~  464 (494)
                      ++..|-
T Consensus       255 ~f~vyd  260 (353)
T d1h6la_         255 SYAIYE  260 (353)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            565554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.87  E-value=0.22  Score=45.11  Aligned_cols=130  Identities=8%  Similarity=-0.022  Sum_probs=74.2

Q ss_pred             eCCcEEEEecCCCCCCCceeEEEEccCCCCCCCCCCCCccccCCCcccccccCCCceEEeeEEEcCCCe-EEEEeCCCCC
Q psy731           71 WHDRLFLAVPRHKNGVPSTLNYVMLPNSNNKNKSITSPILMPYPSWESNVREARNLTSVVKVQSDPCDR-LWALDSGVVE  149 (494)
Q Consensus        71 ~~gRlFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~~sp~l~PYP~~~~n~~~~~~lvsV~~i~iD~~~~-LwvlD~G~~~  149 (494)
                      .+.|+|++-+... ..-.++-.+....          +++.    +...   . +..  ..+.+.++++ ||+.+.....
T Consensus        12 dg~~~~v~~~~~~-~~~~~v~v~D~~t----------g~~~----~~~~---~-g~~--~~~a~SpDg~~l~v~~~~~~~   70 (355)
T d2bbkh_          12 DARRVYVNDPAHF-AAVTQQFVIDGEA----------GRVI----GMID---G-GFL--PNPVVADDGSFIAHASTVFSR   70 (355)
T ss_dssp             CTTEEEEEECGGG-CSSEEEEEEETTT----------TEEE----EEEE---E-CSS--CEEEECTTSSCEEEEEEEEEE
T ss_pred             CCCEEEEEecccC-CCcCeEEEEECCC----------CcEE----EEEE---C-CCC--CceEEcCCCCEEEEEeCCCcc
Confidence            4678898887753 2334566666432          2221    0010   0 111  1355666665 7777643221


Q ss_pred             CCC-CCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCC-CeEEEEEccCCceeEE
Q psy731          150 GKM-EQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGH-NHIVVYNYRTNDSHII  226 (494)
Q Consensus       150 ~~~-~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~-~~iIVyd~~~~~~~rv  226 (494)
                      ... ...-.|.+||+.++++++++.++......-.+.-..+++     .+++.++|+++... ..+.++|..+++.-+.
T Consensus        71 ~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          71 IARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL-----TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             TTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE-----CTTSSEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred             ccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEE-----ecCCCeeEEecCCCCceeeeeecCCCcEeeE
Confidence            000 001168899999999999998876322222233344555     34788899988654 5688899999887554

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.80  E-value=0.85  Score=43.36  Aligned_cols=84  Identities=10%  Similarity=0.072  Sum_probs=57.0

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      +|.++...++|+..+.= +..  .     .+..||+.|++.....+++.      ......+++.. ....+..++|++.
T Consensus        63 ~~~~vafSPDGk~l~~~-~~d--~-----~v~vwd~~t~~~~~~~~i~~------~~~~~~~~~s~-~~spDG~~l~v~~  127 (426)
T d1hzua2          63 AVHISRMSASGRYLLVI-GRD--A-----RIDMIDLWAKEPTKVAEIKI------GIEARSVESSK-FKGYEDRYTIAGA  127 (426)
T ss_dssp             SEEEEEECTTSCEEEEE-ETT--S-----EEEEEETTSSSCEEEEEEEC------CSEEEEEEECC-STTCTTTEEEEEE
T ss_pred             CeeEEEECCCCCEEEEE-eCC--C-----CEEEEEccCCceeEEEEEeC------CCCCcceEEee-eecCCCCEEEEee
Confidence            47788888888754432 222  1     68889999998665555544      11233444432 1234577999999


Q ss_pred             CCCCeEEEEEccCCceeEE
Q psy731          208 SGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv  226 (494)
                      ...+.+.++|..++..-++
T Consensus       128 ~~~~~v~i~d~~~~~~~~~  146 (426)
T d1hzua2         128 YWPPQFAIMDGETLEPKQI  146 (426)
T ss_dssp             EESSEEEEEETTTCCEEEE
T ss_pred             cCCCeEEEEcCCccceeEE
Confidence            9999999999999987766

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.68  E-value=1  Score=43.49  Aligned_cols=222  Identities=13%  Similarity=0.106  Sum_probs=117.2

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|+.+...++|+..+.= +..  .     .+..||+.|++.....+++.      .+....++... ....+..++|++.
T Consensus        63 ~~~~v~fSpDG~~l~~~-s~d--g-----~v~~~d~~t~~~~~~~~i~~------~~~~~~~~~s~-~~SpDG~~l~vs~  127 (432)
T d1qksa2          63 AVHISRLSASGRYLFVI-GRD--G-----KVNMIDLWMKEPTTVAEIKI------GSEARSIETSK-MEGWEDKYAIAGA  127 (432)
T ss_dssp             CEEEEEECTTSCEEEEE-ETT--S-----EEEEEETTSSSCCEEEEEEC------CSEEEEEEECC-STTCTTTEEEEEE
T ss_pred             CeeEEEECCCCCEEEEE-cCC--C-----CEEEEEeeCCCceEEEEEec------CCCCCCeEEec-ccCCCCCEEEEEc
Confidence            47888888888755431 222  1     68889998876433333333      11222333321 1233578999999


Q ss_pred             CCCCeEEEEEccCCceeEE-ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          208 SGHNHIVVYNYRTNDSHII-HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv-~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      ...+.+.+||..++..-+. ..+....+  .                  ...........++...     ++...|++-.
T Consensus       128 ~~~~~v~i~d~~t~~~~~~~~~~~~~~~--~------------------~~~~~~~~~~~v~~s~-----dg~~~~vs~~  182 (432)
T d1qksa2         128 YWPPQYVIMDGETLEPKKIQSTRGMTYD--E------------------QEYHPEPRVAAILASH-----YRPEFIVNVK  182 (432)
T ss_dssp             EETTEEEEEETTTCCEEEEEECCEECTT--T------------------CCEESCCCEEEEEECS-----SSSEEEEEET
T ss_pred             CCCCeEEEEeCccccceeeeccCCcccc--c------------------eeccCCCceeEEEECC-----CCCEEEEEEc
Confidence            9999999999999988776 11111000  0                  0001111222233221     3456667766


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhc
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQ  366 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~  366 (494)
                      ....+.++|..+.+.-++..                  +.-..+..+++++|+    ++.+|.....+..+-.+.++..+
T Consensus       183 ~~~~i~~~d~~~~~~~~~~~------------------i~~g~~~~~~~~spd----g~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         183 ETGKILLVDYTDLNNLKTTE------------------ISAERFLHDGGLDGS----HRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             TTTEEEEEETTCSSEEEEEE------------------EECCSSEEEEEECTT----SCEEEEEEGGGTEEEEEETTTTE
T ss_pred             cCCeEEEEEccCCCcceEEE------------------EcccCccccceECCC----CCEEEEeccccceEEEeecccce
Confidence            66777788777654322211                  000123567999997    37888877766666555443221


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEec-cCCCeEEEEeCCC
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYAL-LVKSGVGCWNTFR  420 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~-~~~~aI~~w~~~~  420 (494)
                      -         ......|..............+..|-++.+. +....|.+|+...
T Consensus       241 ~---------~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         241 L---------VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             E---------EEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred             E---------EEEeccCccccccCcccceecCCCCceecccccCCceEEeccccc
Confidence            0         1112223221112222223333445444333 3467899998865

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.66  E-value=0.83  Score=42.23  Aligned_cols=105  Identities=10%  Similarity=-0.035  Sum_probs=60.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCC---------CCeEEEEEccCCceeE-E
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSG---------HNHIVVYNYRTNDSHI-I  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~---------~~~iIVyd~~~~~~~r-v  226 (494)
                      .|..+|..+++++.++..+.         +..+++     -.+..++|++...         .+.|-|||..+++.-. +
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~---------~~~~a~-----spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i  112 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAF---------LSLAVA-----GHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI  112 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT---------TCEEEE-----CTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred             eEEEEeCCCCcEEEEEeCCC---------CCcceE-----CCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee
Confidence            45555555566666554333         222333     1257778887632         2459999999987633 3


Q ss_pred             ecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEE
Q psy731          227 HHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHII  304 (494)
Q Consensus       227 ~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv  304 (494)
                      .-                        ++......+.....+++..     ++.++|+++.....+.++|+.+++.-+.
T Consensus       113 ~~------------------------p~~~~~~~g~~p~~~a~Sp-----DGk~l~va~~~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         113 EL------------------------PDAPRFSVGPRVHIIGNCA-----SSACLLFFLFGSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             EE------------------------TTSCSCCBSCCTTSEEECT-----TSSCEEEEECSSSCEEEEEETTTEEEEE
T ss_pred             cC------------------------CccceecccCCccceEECC-----CCCEEEEEeCCCCeEEEEECCCCcEeEE
Confidence            11                        0000111111223344432     4678999988888999999999876544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.64  E-value=0.78  Score=41.83  Aligned_cols=210  Identities=10%  Similarity=0.090  Sum_probs=106.3

Q ss_pred             EEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEee
Q psy731          128 SVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIAD  207 (494)
Q Consensus       128 sV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItD  207 (494)
                      .|..+...+++++.+.=....        .|..||+.+++......++.     ..+.+..+...    ..+...+=.++
T Consensus        60 ~v~~~~~sp~g~~latg~~dg--------~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s----~d~~~l~~~~~  122 (311)
T d1nr0a1          60 QTTVAKTSPSGYYCASGDVHG--------NVRIWDTTQTTHILKTTIPV-----FSGPVKDISWD----SESKRIAAVGE  122 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTS--------EEEEEESSSTTCCEEEEEEC-----SSSCEEEEEEC----TTSCEEEEEEC
T ss_pred             CEEEEEEeCCCCeEeccccCc--------eEeeeeeecccccccccccc-----ccCcccccccc----ccccccccccc
Confidence            355566677777766322222        68889999887554444443     23344444442    11222333344


Q ss_pred             CCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCC
Q psy731          208 SGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSG  287 (494)
Q Consensus       208 s~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~  287 (494)
                      .....+-|||+++++.-+.               +.|               .......+.+..     ++.++.++-..
T Consensus       123 ~~~~~~~v~~~~~~~~~~~---------------l~~---------------h~~~v~~v~~~~-----~~~~~l~sgs~  167 (311)
T d1nr0a1         123 GRERFGHVFLFDTGTSNGN---------------LTG---------------QARAMNSVDFKP-----SRPFRIISGSD  167 (311)
T ss_dssp             CSSCSEEEEETTTCCBCBC---------------CCC---------------CSSCEEEEEECS-----SSSCEEEEEET
T ss_pred             ccccccccccccccccccc---------------ccc---------------cccccccccccc-----cceeeeccccc
Confidence            4444567888887654221               000               011123333321     23455555445


Q ss_pred             CCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhc
Q psy731          288 HNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQ  366 (494)
Q Consensus       288 ~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~  366 (494)
                      +..|.+||+++++........                   ...+..++.+|+    ++.|+.....+. .+|...+....
T Consensus       168 d~~i~i~d~~~~~~~~~~~~~-------------------~~~i~~v~~~p~----~~~l~~~~~d~~v~~~d~~~~~~~  224 (311)
T d1nr0a1         168 DNTVAIFEGPPFKFKSTFGEH-------------------TKFVHSVRYNPD----GSLFASTGGDGTIVLYNGVDGTKT  224 (311)
T ss_dssp             TSCEEEEETTTBEEEEEECCC-------------------SSCEEEEEECTT----SSEEEEEETTSCEEEEETTTCCEE
T ss_pred             ccccccccccccccccccccc-------------------cccccccccCcc----cccccccccccccccccccccccc
Confidence            667889999987644332110                   123667888875    245555443332 44443221100


Q ss_pred             CCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          367 NRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       367 ~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      . .+.    ....+..|..   .....++++ .+|.++++--..+.|..||.+++
T Consensus       225 ~-~~~----~~~~~~~~h~---~~V~~~~~s-~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         225 G-VFE----DDSLKNVAHS---GSVFGLTWS-PDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             E-ECB----CTTSSSCSSS---SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTT
T ss_pred             c-ccc----cccccccccc---ccccccccC-CCCCEEEEEeCCCeEEEEECCCC
Confidence            0 000    0111112322   223467888 57776666556778999999875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.88  Score=41.28  Aligned_cols=223  Identities=11%  Similarity=0.101  Sum_probs=113.7

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+..-+++++.+.= +..  .     .|..||+...+......+..     .......+.+.      .++...++-+
T Consensus       100 I~~v~~s~dg~~l~s~-~~d--g-----~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~------~~~~~l~s~~  160 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVG-GEA--S-----TLSIWDLAAPTPRIKAELTS-----SAPACYALAIS------PDSKVCFSCC  160 (337)
T ss_dssp             EEEEEECTTSSEEEEE-ESS--S-----EEEEEECCCC--EEEEEEEC-----SSSCEEEEEEC------TTSSEEEEEE
T ss_pred             EEEEEEcCCCCEEEEe-ecc--c-----cccccccccccccccccccc-----ccccccccccc------cccccccccc
Confidence            4555666666654431 111  1     57778877554322222222     11222222221      2233334445


Q ss_pred             CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      ....|.+||+.+++..+....                              .......+.+.     .+..++++.. .+
T Consensus       161 ~d~~i~~~~~~~~~~~~~~~~------------------------------~~~~v~~l~~s-----~~~~~~~~~~-~d  204 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLVRQFQG------------------------------HTDGASCIDIS-----NDGTKLWTGG-LD  204 (337)
T ss_dssp             TTSCEEEEETTTTEEEEEECC------------------------------CSSCEEEEEEC-----TTSSEEEEEE-TT
T ss_pred             ccccccccccccccccccccc------------------------------ccccccccccc-----cccccccccc-cc
Confidence            667899999999887766210                              00112223332     1234444443 35


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcC
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQN  367 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~  367 (494)
                      ..+.+||+++++.-+..                    .....+..|+++|.    ++.|+.....+. ++|.+.+..   
T Consensus       205 ~~v~i~d~~~~~~~~~~--------------------~~~~~i~~l~~~~~----~~~l~~~~~d~~i~i~d~~~~~---  257 (337)
T d1gxra_         205 NTVRSWDLREGRQLQQH--------------------DFTSQIFSLGYCPT----GEWLAVGMESSNVEVLHVNKPD---  257 (337)
T ss_dssp             SEEEEEETTTTEEEEEE--------------------ECSSCEEEEEECTT----SSEEEEEETTSCEEEEETTSSC---
T ss_pred             ccccccccccceeeccc--------------------ccccceEEEEEccc----ccccceeccccccccccccccc---
Confidence            67889999887643321                    12234677888875    356665444442 444433211   


Q ss_pred             CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCCccccccceeeeeecCCeEecccceEE
Q psy731          368 RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRGEEYNEKSMGLVAEDNATLIYPSDIRV  447 (494)
Q Consensus       368 ~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~~~v~~d~~~l~~pd~~~i  447 (494)
                                .++..+..   .....+++. .+|.++++--..+.|..||...+++.     ...... .   .+..+.+
T Consensus       258 ----------~~~~~~~~---~~i~~v~~s-~~g~~l~s~s~Dg~i~iwd~~~~~~~-----~~~~~~-~---~v~~~~~  314 (337)
T d1gxra_         258 ----------KYQLHLHE---SCVLSLKFA-YCGKWFVSTGKDNLLNAWRTPYGASI-----FQSKES-S---SVLSCDI  314 (337)
T ss_dssp             ----------EEEECCCS---SCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEE-----EEEECS-S---CEEEEEE
T ss_pred             ----------cccccccc---cccceEEEC-CCCCEEEEEeCCCeEEEEECCCCCEE-----EEccCC-C---CEEEEEE
Confidence                      12223332   334567888 68877777677788999998874221     222221 1   2345666


Q ss_pred             cCCceEEEE
Q psy731          448 DRTGVLWVL  456 (494)
Q Consensus       448 d~~g~Lwvl  456 (494)
                      .++|.+-++
T Consensus       315 s~d~~~l~t  323 (337)
T d1gxra_         315 SVDDKYIVT  323 (337)
T ss_dssp             CTTSCEEEE
T ss_pred             eCCCCEEEE
Confidence            666654333

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.29  E-value=1.1  Score=41.35  Aligned_cols=220  Identities=9%  Similarity=0.021  Sum_probs=109.3

Q ss_pred             EeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeC
Q psy731          129 VVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADS  208 (494)
Q Consensus       129 V~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs  208 (494)
                      |..+...+++++.++=....        .|..||+.+++......|..     .......+.+.-     +..++... +
T Consensus        10 It~~~~s~dg~~la~~~~~~--------~i~iw~~~~~~~~~~~~l~g-----H~~~V~~l~fsp-----~~~~l~s~-s   70 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNH--------EVHIYEKSGNKWVQVHELKE-----HNGQVTGVDWAP-----DSNRIVTC-G   70 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSS--------EEEEEEEETTEEEEEEEEEC-----CSSCEEEEEEET-----TTTEEEEE-E
T ss_pred             eEEEEECCCCCEEEEEeCCC--------EEEEEECCCCCEEEEEEecC-----CCCCEEEEEECC-----CCCEEEEE-E
Confidence            33445667777777633322        68889998887665555543     334455555531     34555444 3


Q ss_pred             CCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCC
Q psy731          209 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGH  288 (494)
Q Consensus       209 ~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~  288 (494)
                      ..+.|.|||+.++...+.-.             +.               ........+....     ++.++++.. .+
T Consensus        71 ~D~~i~vWd~~~~~~~~~~~-------------~~---------------~~~~~v~~i~~~p-----~~~~l~~~s-~d  116 (371)
T d1k8kc_          71 TDRNAYVWTLKGRTWKPTLV-------------IL---------------RINRAARCVRWAP-----NEKKFAVGS-GS  116 (371)
T ss_dssp             TTSCEEEEEEETTEEEEEEE-------------CC---------------CCSSCEEEEEECT-----TSSEEEEEE-TT
T ss_pred             CCCeEEEEeecccccccccc-------------cc---------------ccccccccccccc-----ccccceeec-cc
Confidence            35679999998876554410             00               0011123333321     223444432 33


Q ss_pred             CeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcC
Q psy731          289 NHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQN  367 (494)
Q Consensus       289 ~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~  367 (494)
                      .-+-+|++...+.+.........               ....+..++.+|++    +.|......+. ++|.+....+..
T Consensus       117 ~~i~i~~~~~~~~~~~~~~~~~~---------------~~~~v~~v~~~p~~----~~l~s~s~D~~v~v~~~~~~~~~~  177 (371)
T d1k8kc_         117 RVISICYFEQENDWWVCKHIKKP---------------IRSTVLSLDWHPNS----VLLAAGSCDFKCRIFSAYIKEVEE  177 (371)
T ss_dssp             SSEEEEEEETTTTEEEEEEECTT---------------CCSCEEEEEECTTS----SEEEEEETTSCEEEEECCCTTTSC
T ss_pred             Ccceeeeeecccccccccccccc---------------cccccccccccccc----cceeccccCcEEEEEeeccCcccc
Confidence            44666666655433322111110               12346678888752    45544443333 566665544433


Q ss_pred             CCcC-ccccc-cceEEecc-cCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          368 RSLD-FSRSN-FDFKVMGS-RGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       368 ~~~~-~~~~~-~~v~~~G~-~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .... ..... ...+.+.+ .+......+++++ .+|...++--....|..||..++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~iwd~~~~  233 (371)
T d1k8kc_         178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLADADKK  233 (371)
T ss_dssp             CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEEEGGGT
T ss_pred             ccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcceEEeeecc
Confidence            2211 00000 01111111 1112334567888 56766555566788999998774

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.84  E-value=0.51  Score=46.85  Aligned_cols=73  Identities=14%  Similarity=0.234  Sum_probs=48.4

Q ss_pred             CCceEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCcc-ccccCCccceEEEeecCCCCCcE
Q psy731          124 RNLTSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTD-YTEESKFSNMVVDVTSANCDNAF  202 (494)
Q Consensus       124 ~~lvsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~-~~~~S~l~d~vVD~~~~~c~~~~  202 (494)
                      ++|...-.|....+++|+|..-+..        +|.+++..+++......+|.... ......|=++++|-  ..-.+.+
T Consensus        24 ~~L~~P~~la~~pdg~llVter~~G--------~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P--df~~n~~   93 (450)
T d1crua_          24 SNLNKPHALLWGPDNQIWLTERATG--------KILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP--DFKNNPY   93 (450)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTC--------EEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT--TTTTSCE
T ss_pred             CCCCCceEEEEeCCCeEEEEEecCC--------EEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC--CCccCCE
Confidence            4688888999999999999986555        78889998888877777776211 22334455555542  2223455


Q ss_pred             EEEe
Q psy731          203 LYIA  206 (494)
Q Consensus       203 vYIt  206 (494)
                      +|++
T Consensus        94 iYvs   97 (450)
T d1crua_          94 IYIS   97 (450)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=94.11  E-value=2  Score=38.83  Aligned_cols=54  Identities=2%  Similarity=-0.109  Sum_probs=38.7

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEE
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHII  226 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv  226 (494)
                      .+..++..+.++......|.           .+.+     ......+|++.+..+.+.++|..++...+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~-----------~~~~-----s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         149 AVGLVVQGGSSDDQLLSSPT-----------CYHI-----HPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             ceEEeeccCCeEEEEeccce-----------eEEE-----ecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            45667777777776555444           1222     125678999999999999999999988776

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.61  E-value=1.8  Score=38.29  Aligned_cols=99  Identities=16%  Similarity=0.247  Sum_probs=57.1

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEE-EEeeCCCCeEEEEEccCCceeEEecCccccCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFL-YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDP  235 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~v-YItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp  235 (494)
                      +|.+||+.++++++   ++.      .....+++..     .+..++ +.++..+..|.|||+.++...++.++..    
T Consensus        25 ~v~v~d~~~~~~~~---~~~------~~~v~~~~~s-----pDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~----   86 (360)
T d1k32a3          25 QAFIQDVSGTYVLK---VPE------PLRIRYVRRG-----GDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLG----   86 (360)
T ss_dssp             EEEEECTTSSBEEE---CSC------CSCEEEEEEC-----SSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCC----
T ss_pred             eEEEEECCCCcEEE---ccC------CCCEEEEEEC-----CCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCc----
Confidence            57777777766654   122      2233444431     234444 5566655678999999999988833221    


Q ss_pred             CCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEec
Q psy731          236 LFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       236 ~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~  306 (494)
                                                 ....+++..     ++.++... .....+.+|++.+++.++...
T Consensus        87 ---------------------------~v~~~~~sp-----dg~~l~~~-~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1k32a3          87 ---------------------------NVFAMGVDR-----NGKFAVVA-NDRFEIMTVDLETGKPTVIER  124 (360)
T ss_dssp             ---------------------------SEEEEEECT-----TSSEEEEE-ETTSEEEEEETTTCCEEEEEE
T ss_pred             ---------------------------eEEeeeecc-----ccccccee-ccccccccccccccceeeeee
Confidence                                       122233321     22333333 246679999999998887754

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.39  E-value=2.6  Score=37.89  Aligned_cols=218  Identities=10%  Similarity=0.097  Sum_probs=107.8

Q ss_pred             eEEeeEEEcCCCeEEEEeCCCCCCCCCCCCEEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEe
Q psy731          127 TSVVKVQSDPCDRLWALDSGVVEGKMEQPPSVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIA  206 (494)
Q Consensus       127 vsV~~i~iD~~~~LwvlD~G~~~~~~~~~Pklv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYIt  206 (494)
                      ..|..+...+++++.+.=....        .|..||..+++.+..+.-..       .....+..     ......++.+
T Consensus       122 ~~V~~l~~s~~~~~l~s~~~dg--------~v~i~~~~~~~~~~~~~~h~-------~~v~~~~~-----~~~~~~~~~~  181 (388)
T d1erja_         122 LYIRSVCFSPDGKFLATGAEDR--------LIRIWDIENRKIVMILQGHE-------QDIYSLDY-----FPSGDKLVSG  181 (388)
T ss_dssp             CBEEEEEECTTSSEEEEEETTS--------CEEEEETTTTEEEEEECCCS-------SCEEEEEE-----CTTSSEEEEE
T ss_pred             CCEEEEEECCCCCcceeccccc--------cccccccccccccccccccc-------cccccccc-----cccccccccc
Confidence            3466677777777665422111        57888999988877654322       12222222     1133444444


Q ss_pred             eCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecC
Q psy731          207 DSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADS  286 (494)
Q Consensus       207 Ds~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~  286 (494)
                      . ..+.+.+||+.+..........                               .....+....    .+..+++... 
T Consensus       182 ~-~~~~i~~~d~~~~~~~~~~~~~-------------------------------~~~~~~~~~~----~~~~~l~~~~-  224 (388)
T d1erja_         182 S-GDRTVRIWDLRTGQCSLTLSIE-------------------------------DGVTTVAVSP----GDGKYIAAGS-  224 (388)
T ss_dssp             E-TTSEEEEEETTTTEEEEEEECS-------------------------------SCEEEEEECS----TTCCEEEEEE-
T ss_pred             c-cceeeeeeeccccccccccccc-------------------------------cccccccccC----CCCCeEEEEc-
Confidence            3 4567899998887665541100                               0011111111    1233443332 


Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..|.+||..++...+.........        .|    -...|..|+.+|+    ++.|.-....+. ++|.+.+...
T Consensus       225 ~d~~i~i~~~~~~~~~~~~~~~~~~~--------~~----h~~~v~~l~~s~~----~~~l~s~~~d~~i~iwd~~~~~~  288 (388)
T d1erja_         225 LDRAVRVWDSETGFLVERLDSENESG--------TG----HKDSVYSVVFTRD----GQSVVSGSLDRSVKLWNLQNANN  288 (388)
T ss_dssp             TTSCEEEEETTTCCEEEEEC--------------CC----CSSCEEEEEECTT----SSEEEEEETTSEEEEEEC-----
T ss_pred             CCCeEEEeecccCccceeeccccccc--------cC----CCCCEEEEEECCC----CCEEEEEECCCcEEEEeccCCcc
Confidence            34568899998877654432211100        00    1234778999886    356666555554 6666655433


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                      .................+.+   .....+++. .+|.+.++--..+.|..||..+|
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s-~~~~~l~sg~~dg~i~vwd~~~~  340 (388)
T d1erja_         289 KSDSKTPNSGTCEVTYIGHK---DFVLSVATT-QNDEYILSGSKDRGVLFWDKKSG  340 (388)
T ss_dssp             ----------CEEEEEECCS---SCEEEEEEC-GGGCEEEEEETTSEEEEEETTTC
T ss_pred             ccccccccccceeeeccccc---ceEEEEEEC-CCCCEEEEEeCCCEEEEEECCCC
Confidence            22221111111112222222   234567777 57766666667788999999875

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=3.1  Score=37.36  Aligned_cols=170  Identities=11%  Similarity=0.096  Sum_probs=90.0

Q ss_pred             EEEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCC
Q psy731          157 SVQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPL  236 (494)
Q Consensus       157 klv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~  236 (494)
                      .+..+|+.++++.+.+.-..       +....+.+     ...+.+++++. ..+.+.+||+.+++.-+...+       
T Consensus       164 ~i~~~~~~~~~~~~~~~~~~-------~~v~~l~~-----s~~~~~~~~~~-~d~~v~i~d~~~~~~~~~~~~-------  223 (337)
T d1gxra_         164 NIAVWDLHNQTLVRQFQGHT-------DGASCIDI-----SNDGTKLWTGG-LDNTVRSWDLREGRQLQQHDF-------  223 (337)
T ss_dssp             CEEEEETTTTEEEEEECCCS-------SCEEEEEE-----CTTSSEEEEEE-TTSEEEEEETTTTEEEEEEEC-------
T ss_pred             cccccccccccccccccccc-------cccccccc-----ccccccccccc-ccccccccccccceeeccccc-------
Confidence            57778888887766543222       22333333     12344555543 357799999998876443110       


Q ss_pred             CCccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCc
Q psy731          237 FGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFG  316 (494)
Q Consensus       237 ~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~  316 (494)
                                              ......+.++.     ++.++++.. .+..+.+||+++++..+...+         
T Consensus       224 ------------------------~~~i~~l~~~~-----~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~---------  264 (337)
T d1gxra_         224 ------------------------TSQIFSLGYCP-----TGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH---------  264 (337)
T ss_dssp             ------------------------SSCEEEEEECT-----TSSEEEEEE-TTSCEEEEETTSSCEEEECCC---------
T ss_pred             ------------------------ccceEEEEEcc-----cccccceec-ccccccccccccccccccccc---------
Confidence                                    01123333332     234444443 356788999988775443211         


Q ss_pred             ceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhhcCCCcCccccccceEEecccCCCCCCCeEE
Q psy731          317 DFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVLQNRSLDFSRSNFDFKVMGSRGTGSQSGASS  395 (494)
Q Consensus       317 ~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~  395 (494)
                                 ...+.+|+++|++    +.|.-....+. ++|.+++.             +.+...+..   .....++
T Consensus       265 -----------~~~i~~v~~s~~g----~~l~s~s~Dg~i~iwd~~~~-------------~~~~~~~~~---~~v~~~~  313 (337)
T d1gxra_         265 -----------ESCVLSLKFAYCG----KWFVSTGKDNLLNAWRTPYG-------------ASIFQSKES---SSVLSCD  313 (337)
T ss_dssp             -----------SSCEEEEEECTTS----SEEEEEETTSEEEEEETTTC-------------CEEEEEECS---SCEEEEE
T ss_pred             -----------ccccceEEECCCC----CEEEEEeCCCeEEEEECCCC-------------CEEEEccCC---CCEEEEE
Confidence                       1347778898862    45554444332 44543221             112223322   2234567


Q ss_pred             eeCCCCeEEEeccCCCeEEEEe
Q psy731          396 LDEETGVIFYALLVKSGVGCWN  417 (494)
Q Consensus       396 ~D~~~G~ly~~~~~~~aI~~w~  417 (494)
                      ++ .+|.+.++--....|..||
T Consensus       314 ~s-~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         314 IS-VDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EC-TTSCEEEEEETTSCEEEEE
T ss_pred             Ee-CCCCEEEEEeCCCeEEEEE
Confidence            77 5676655555667788887

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.64  E-value=3.1  Score=36.66  Aligned_cols=92  Identities=8%  Similarity=0.119  Sum_probs=55.9

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ++..||.+   ++.|.|||+.++...++.|.                                .....++...     +.
T Consensus        15 G~~~a~~~---~g~v~v~d~~~~~~~~~~~~--------------------------------~~v~~~~~sp-----Dg   54 (360)
T d1k32a3          15 GDLIAFVS---RGQAFIQDVSGTYVLKVPEP--------------------------------LRIRYVRRGG-----DT   54 (360)
T ss_dssp             GGCEEEEE---TTEEEEECTTSSBEEECSCC--------------------------------SCEEEEEECS-----SS
T ss_pred             CCEEEEEE---CCeEEEEECCCCcEEEccCC--------------------------------CCEEEEEECC-----CC
Confidence            55666654   35899999999988777331                                1123333321     33


Q ss_pred             cEE-EEecCCCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCC
Q psy731          279 AFL-YIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAS  354 (494)
Q Consensus       279 ~~~-YI~D~~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss  354 (494)
                      .++ +..+-.+.-|.+||+++++.-++.++.                    ..+..++.||++    +.|.+..-..
T Consensus        55 ~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~--------------------~~v~~~~~spdg----~~l~~~~~~~  107 (360)
T d1k32a3          55 KVAFIHGTREGDFLGIYDYRTGKAEKFEENL--------------------GNVFAMGVDRNG----KFAVVANDRF  107 (360)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEECCCCC--------------------CSEEEEEECTTS----SEEEEEETTS
T ss_pred             CEEEEEEcCCCCEEEEEECCCCcEEEeeCCC--------------------ceEEeeeecccc----cccceecccc
Confidence            444 444433456889999998876654321                    236678899873    5666654443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.83  E-value=5.4  Score=35.80  Aligned_cols=140  Identities=13%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             EEEEECCCCcEEEEEEcCCCccccccCCccceEEEeecCCCCCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCC
Q psy731          158 VQVYDLRQQMQIRFFQLKEKTDYTEESKFSNMVVDVTSANCDNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLF  237 (494)
Q Consensus       158 lv~~dl~t~~vi~~~~lp~~~~~~~~S~l~d~vVD~~~~~c~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~  237 (494)
                      +.++|+++++.++++..       ....+..+.+.     ..+.++.+|=+..+.|.+||+++++......         
T Consensus       128 ~~v~~~~~~~~~~~l~~-------h~~~v~~v~~~-----~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~---------  186 (311)
T d1nr0a1         128 GHVFLFDTGTSNGNLTG-------QARAMNSVDFK-----PSRPFRIISGSDDNTVAIFEGPPFKFKSTFG---------  186 (311)
T ss_dssp             EEEEETTTCCBCBCCCC-------CSSCEEEEEEC-----SSSSCEEEEEETTSCEEEEETTTBEEEEEEC---------
T ss_pred             ccccccccccccccccc-------ccccccccccc-----ccceeeecccccccccccccccccccccccc---------
Confidence            45667777665543221       12233333332     2456667776667789999999877655411         


Q ss_pred             CccccCCccceeeeecccccccccccceeeEEeeecCCCCCcEEEEecCCCCeEEEEEcCCCcEEEEecC-CcccCCCCc
Q psy731          238 GDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDDAFLYIADSGHNHIVVYNYRTNDSHIIHHN-YLHFDPLFG  316 (494)
Q Consensus       238 ~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~~~~YI~D~~~~gliVydl~~~~swrv~~~-~~~~dP~~~  316 (494)
                                           ........+..+.     +..+++... .+..+.+||+.+++.-..... ....     
T Consensus       187 ---------------------~~~~~i~~v~~~p-----~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~-----  234 (311)
T d1nr0a1         187 ---------------------EHTKFVHSVRYNP-----DGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKN-----  234 (311)
T ss_dssp             ---------------------CCSSCEEEEEECT-----TSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSS-----
T ss_pred             ---------------------cccccccccccCc-----ccccccccc-cccccccccccccccccccccccccc-----
Confidence                                 0011233444432     234444443 356788999988765433221 1110     


Q ss_pred             ceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeec
Q psy731          317 DFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTT  362 (494)
Q Consensus       317 ~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T  362 (494)
                          .|    -...|..|+++|+    ++.|+-....+. ++|.+.+
T Consensus       235 ----~~----h~~~V~~~~~s~~----~~~l~tgs~Dg~v~iwd~~t  269 (311)
T d1nr0a1         235 ----VA----HSGSVFGLTWSPD----GTKIASASADKTIKIWNVAT  269 (311)
T ss_dssp             ----CS----SSSCEEEEEECTT----SSEEEEEETTSEEEEEETTT
T ss_pred             ----cc----ccccccccccCCC----CCEEEEEeCCCeEEEEECCC
Confidence                00    1235788999986    357776655443 5665543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.20  E-value=5.2  Score=34.56  Aligned_cols=98  Identities=9%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             CCCeEEEEEcCCCcEEEEecCCcccCCCCcceEEcCEEeeeecceeeeeeccCCCCCceeEEEeeCCCc-ceEeeechhh
Q psy731          287 GHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGVNFQWQTGIHGMSLSPLTRDNFRVMYFHPLAST-TEFAVTTKVL  365 (494)
Q Consensus       287 ~~~gliVydl~~~~swrv~~~~~~~dP~~~~~~v~G~~f~~~~Gi~gIaLsp~~~~g~r~LYf~plss~-~ly~V~T~~L  365 (494)
                      .+..+.+||+++++..+....                   ....|..|+++|+    ++.|+.....+. ++|.+...  
T Consensus       204 ~d~~v~i~d~~~~~~~~~~~~-------------------h~~~i~~v~~~p~----~~~l~s~s~d~~i~~~~~~~~--  258 (340)
T d1tbga_         204 CDASAKLWDVREGMCRQTFTG-------------------HESDINAICFFPN----GNAFATGSDDATCRLFDLRAD--  258 (340)
T ss_dssp             TTTEEEEEETTTTEEEEEECC-------------------CSSCEEEEEECTT----SSEEEEEETTSCEEEEETTTT--
T ss_pred             cCceEEEEECCCCcEEEEEeC-------------------CCCCeEEEEECCC----CCEEEEEeCCCeEEEEeeccc--
Confidence            456677888877664332211                   0134777899886    256665554443 44433221  


Q ss_pred             cCCCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEEeccCCCeEEEEeCCCC
Q psy731          366 QNRSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFYALLVKSGVGCWNTFRG  421 (494)
Q Consensus       366 ~~~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~~~~~~~aI~~w~~~~~  421 (494)
                                 ..+..............++++ .+|.+.++--....|..||..++
T Consensus       259 -----------~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~g~~dg~i~iwd~~~~  302 (340)
T d1tbga_         259 -----------QELMTYSHDNIICGITSVSFS-KSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             -----------EEEEEECCTTCCSCEEEEEEC-SSSCEEEEEETTSCEEEEETTTC
T ss_pred             -----------ccccccccccccCceEEEEEC-CCCCEEEEEECCCEEEEEECCCC
Confidence                       111112111111234567888 68877777777888999998774

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=85.86  E-value=18  Score=35.70  Aligned_cols=82  Identities=18%  Similarity=0.204  Sum_probs=52.8

Q ss_pred             cceeeeeeccCCCCCceeEEEeeCCCcceEeeechhhcC---CCcCccccccceEEecccCCCCCCCeEEeeCCCCeEEE
Q psy731          329 TGIHGMSLSPLTRDNFRVMYFHPLASTTEFAVTTKVLQN---RSLDFSRSNFDFKVMGSRGTGSQSGASSLDEETGVIFY  405 (494)
Q Consensus       329 ~Gi~gIaLsp~~~~g~r~LYf~plss~~ly~V~T~~L~~---~~~~~~~~~~~v~~~G~~G~~~qs~g~~~D~~~G~ly~  405 (494)
                      -+-.|+.+|||    ++.+|..-.-+.++--++.+-|++   ..+...   ..+.-.-+.|..+  -=.++| ..|+.|-
T Consensus       275 KsPHGV~vSPD----GKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~---~~~~~e~elglgP--Lht~fd-~~g~ayt  344 (459)
T d1fwxa2         275 NNPHGCNMAPD----KKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR---SAVVAEPELGLGP--LHTAFD-GRGNAYT  344 (459)
T ss_dssp             SSCCCEEECTT----SSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GG---GGEEECCBCCSCE--EEEEEC-TTSEEEE
T ss_pred             CCCCceEECCC----CCEEEEeCCcCCcEEEEEehhhhhhhcccCCcc---ccEEeecccCcCc--cccccC-CCceEEE
Confidence            45678999998    489999777777777777765543   222111   1111111222111  124789 8999999


Q ss_pred             eccCCCeEEEEeCCC
Q psy731          406 ALLVKSGVGCWNTFR  420 (494)
Q Consensus       406 ~~~~~~aI~~w~~~~  420 (494)
                      ++.-.+.|..||.++
T Consensus       345 slfids~v~kw~~~~  359 (459)
T d1fwxa2         345 SLFLDSQVVKWNIED  359 (459)
T ss_dssp             EETTTTEEEEEEHHH
T ss_pred             EeeccceEEEEecch
Confidence            999999999999753

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=80.62  E-value=4  Score=34.94  Aligned_cols=70  Identities=10%  Similarity=0.138  Sum_probs=43.9

Q ss_pred             CCcEEEEeeCCCCeEEEEEccCCceeEEecCccccCCCCCccccCCccceeeeecccccccccccceeeEEeeecCCCCC
Q psy731          199 DNAFLYIADSGHNHIVVYNYRTNDSHIIHHNYLHFDPLFGDFTIGGEYSEFFQLKEKTDYTEESKFSNMVVDVTSANCDD  278 (494)
Q Consensus       199 ~~~~vYItDs~~~~iIVyd~~~~~~~rv~~~~~~~dp~~~~f~i~g~~~~~f~l~~~~~~~~~s~~~~i~VD~~~~~c~~  278 (494)
                      ++..||+++   +-|.++|++++..++++....                               .-...+.-  + + ++
T Consensus        12 G~~v~f~~~---~dl~~~d~~~g~~~~Lt~~~~-------------------------------~~~~p~~S--P-D-G~   53 (281)
T d1k32a2          12 GDRIIFVCC---DDLWEHDLKSGSTRKIVSNLG-------------------------------VINNARFF--P-D-GR   53 (281)
T ss_dssp             TTEEEEEET---TEEEEEETTTCCEEEEECSSS-------------------------------EEEEEEEC--T-T-SS
T ss_pred             CCEEEEEeC---CcEEEEECCCCCEEEEecCCC-------------------------------cccCEEEC--C-C-CC
Confidence            455666653   359999999999999944211                               00111111  1 1 24


Q ss_pred             cEEEEecCCC----CeEEEEEcCCCcEEEEec
Q psy731          279 AFLYIADSGH----NHIVVYNYRTNDSHIIHH  306 (494)
Q Consensus       279 ~~~YI~D~~~----~gliVydl~~~~swrv~~  306 (494)
                      ..||+.+..+    ..|.+++..+++..++..
T Consensus        54 ~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~   85 (281)
T d1k32a2          54 KIAIRVMRGSSLNTADLYFYNGENGEIKRITY   85 (281)
T ss_dssp             EEEEEEEESTTCCEEEEEEEETTTTEEEECCC
T ss_pred             EEEEEEeeCCCCCceEEEEEEecCCceEEeee
Confidence            6777765332    358999999999999864