Psyllid ID: psy7328

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MSSFERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MSSFERRQRLLEQLQSSSVKITnmynnrpsysaQRNELFAdvgttgwgddasdeespllgaNIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL
Flexible Loop (DISEMBL)
MSSFERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIaltisnevdvqnDLVDDITERMDhtnvsiqretnqvTSILTQDATCGYWVVIIVLFIANVLVATL
Low Complexity Region (SEG)
MSSFERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL
Disordered region (IsUnstruct)
**************************************FADVGTT***********************************LEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA**
Disordered Region (DISOPRED)
MSSFERRQRL***********************************************************************EALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSI*R*TNQ*TSILTQDATCGYWVVIIVLFIANVLVATL
Disordered Region (DISEMBL)
*********LLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL
Disordered Region (DISPRO)
*SSFERRQRLLEQLQSSSVKITNMYN********************************LGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSFERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q9UNK0	236	Syntaxin-8 OS=Homo sapien	yes	N/A	0.402	0.271	0.406	3e-08
Q9Z2Q7	236	Syntaxin-8 OS=Rattus norv	yes	N/A	0.402	0.271	0.406	6e-08
Q3T075	236	Syntaxin-8 OS=Bos taurus	yes	N/A	0.402	0.271	0.390	2e-07
O88983	236	Syntaxin-8 OS=Mus musculu	yes	N/A	0.402	0.271	0.390	2e-07
Q553P5	152	Syntaxin-8A OS=Dictyostel	yes	N/A	0.528	0.552	0.333	1e-05
Q54IX6	250	Probable syntaxin-8B OS=D	no	N/A	0.842	0.536	0.281	5e-05
Q9SA23	232	Syntaxin-51 OS=Arabidopsi	yes	N/A	0.899	0.616	0.243	0.0001
Q946Y7	245	Syntaxin-61 OS=Arabidopsi	no	N/A	0.578	0.375	0.25	0.0003
Q94KK7	233	Syntaxin-52 OS=Arabidopsi	no	N/A	0.704	0.480	0.325	0.0003

>sp|Q9UNK0|STX8_HUMAN Syntaxin-8 OS=Homo sapiens GN=STX8 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 44/64 (68%)

Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137
           D GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  ++ ET +V  +  + 
Sbjct: 152 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRNETRRVNMVDRKS 211

Query: 138 ATCG 141
           A+CG
Sbjct: 212 ASCG 215

Vesicle trafficking protein that functions in the early secretory pathway, possibly by mediating retrograde transport from cis-Golgi membranes to the ER.
Homo sapiens (taxid: 9606)

>sp|Q9Z2Q7|STX8_RAT Syntaxin-8 OS=Rattus norvegicus GN=Stx8 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 44/64 (68%)

Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137
           D GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  ++ E  +VT +  + 
Sbjct: 152 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDRKS 211

Query: 138 ATCG 141
           A+CG
Sbjct: 212 ASCG 215

Vesicle trafficking protein that functions in the early secretory pathway, possibly by mediating retrograde transport from cis-Golgi membranes to the ER.

Rattus norvegicus (taxid: 10116)

>sp|Q3T075|STX8_BOVIN Syntaxin-8 OS=Bos taurus GN=STX8 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%)

Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137
           D GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  ++ ET +V  +  + 
Sbjct: 152 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTETRRVNLVDRKS 211

Query: 138 ATCG 141
            +CG
Sbjct: 212 TSCG 215

Vesicle trafficking protein that functions in the early secretory pathway, possibly by mediating retrograde transport from cis-Golgi membranes to the ER.

Bos taurus (taxid: 9913)

>sp|O88983|STX8_MOUSE Syntaxin-8 OS=Mus musculus GN=Stx8 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 43/64 (67%)

Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137
           D GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  ++ E  +VT +  + 
Sbjct: 152 DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDRKS 211

Query: 138 ATCG 141
            +CG
Sbjct: 212 TSCG 215

Vesicle trafficking protein that functions in the early secretory pathway, possibly by mediating retrograde transport from cis-Golgi membranes to the ER.

Mus musculus (taxid: 10090)

>sp|Q553P5|STX8A_DICDI Syntaxin-8A OS=Dictyostelium discoideum GN=syn8A PE=1 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%)

Query: 65  DVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQ 124
           DV E+Q+  +  QD+ L+ALS  ISR K+ A+TI+     Q D++D++   +D T+  ++
Sbjct: 54  DVFEKQKRDMEEQDKMLDALSGSISRVKDTAITINKTAQEQTDMLDELDVHVDSTSARMR 113

Query: 125 RETNQVTSILTQDATCGYWVVIIV 148
             T  + ++  Q  T GY   I  
Sbjct: 114 NTTKNLITLTQQSKTTGYCSAICF 137

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54IX6|STX8B_DICDI Probable syntaxin-8B OS=Dictyostelium discoideum GN=syn8B PE=3 SV=1

 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 8/142 (5%)

Query: 6   RRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
           RR+  +E L S   ++ +  +   + ++Q+NEL  +    G G        P        
Sbjct: 78  RRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQ 137

Query: 66  VREQQ-----QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTN 120
              QQ     Q ++  QD+ L+ LS+ I RQKN+A  +SNE+D  N+++DD+    D  +
Sbjct: 138 FDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVEIGTDAVS 197

Query: 121 VSIQRETNQVTSILTQDA--TC 140
           + + R  N+    + Q+A  TC
Sbjct: 198 MRL-RNANRRMETIKQNAGSTC 218

Dictyostelium discoideum (taxid: 44689)

>sp|Q9SA23|SYP51_ARATH Syntaxin-51 OS=Arabidopsis thaliana GN=SYP51 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 75/152 (49%), Gaps = 9/152 (5%)

Query: 4   FERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANI 63
             RR+ ++  L+S + ++ N  N   S  A R+ L       G      D  S + G + 
Sbjct: 77  MNRRKDMVGNLRSKANQMANALN--MSNFANRDSLL------GPDIKPDDSMSRVTGMDN 128

Query: 64  ADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSI 123
             +   Q+ ++  QD+GLE L   +   K+IAL +S E+D+Q  L+DD+   +D T+  +
Sbjct: 129 QGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELDLQTRLIDDLDYHVDVTDSRL 188

Query: 124 QRETNQVTSILTQDATCGYWVVIIVLFIANVL 155
           +R   +  +++ ++   G   + ++L +  ++
Sbjct: 189 RR-VQKSLAVMNKNMRSGCSCMSMLLSVLGIV 219

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q946Y7|SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 49/92 (53%)

Query: 68  EQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRET 127
           ++Q ++I  QD+ L+ LSK + R   + LTI +E+  Q  ++D++   MD T   ++   
Sbjct: 150 DRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQERIIDELDTEMDSTKNRLEFVQ 209

Query: 128 NQVTSILTQDATCGYWVVIIVLFIANVLVATL 159
            +V  ++ +    G  ++I  L +  +++  L
Sbjct: 210 KKVGMVMKKAGAKGQMMMICFLLVLFIILFVL 241

Vesicle trafficking protein that functions in the secretory pathway. Involved in osmotic stress tolerance and in abscisic acid (ABA) regulation of stomatal responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KK7|SYP52_ARATH Syntaxin-52 OS=Arabidopsis thaliana GN=SYP52 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 66/120 (55%), Gaps = 8/120 (6%)

Query: 6   RRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
           RR+ ++  L+S + ++ +  N   S  A R+ LF   GT    DDA +  S +    I  
Sbjct: 80  RRKDMVGNLRSKTNQVASALN--MSNFANRDSLF---GTDLKPDDAINRVSGMDNQGI-- 132

Query: 66  VREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125
           V  Q+Q+M   QD+GLE L + +   K+IAL ++ E+ +Q  L+DD+   +D T+  ++R
Sbjct: 133 VVFQRQVM-REQDEGLEKLEETVMSTKHIALAVNEELTLQTRLIDDLDYDVDITDSRLRR 191

Vesicle trafficking protein that functions in the secretory pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
307191036	221	Syntaxin-8 [Camponotus floridanus]	0.962	0.692	0.441	7e-28
322792150	169	hypothetical protein SINV_08115 [Solenop	0.962	0.905	0.444	8e-28
307205777	219	Syntaxin-8 [Harpegnathos saltator]	0.962	0.698	0.422	3e-27
383847227	247	PREDICTED: syntaxin-8-like isoform 1 [Me	0.974	0.627	0.426	3e-25
383847229	221	PREDICTED: syntaxin-8-like isoform 2 [Me	0.974	0.701	0.426	4e-25
332030174	233	Syntaxin-8 [Acromyrmex echinatior]	0.886	0.605	0.429	9e-25
242247019	247	syntaxin-8-like [Acyrthosiphon pisum] gi	0.949	0.611	0.445	3e-23
350407898	246	PREDICTED: syntaxin-8-like isoform 1 [Bo	0.974	0.630	0.423	3e-23
350407901	225	PREDICTED: syntaxin-8-like isoform 2 [Bo	0.974	0.688	0.423	3e-23
158295335	243	AGAP006100-PA [Anopheles gambiae str. PE	0.943	0.617	0.424	1e-22

>gi|307191036|gb|EFN74790.1| Syntaxin-8 [Camponotus floridanus]

 Score =  128 bits (322), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 109/163 (66%), Gaps = 10/163 (6%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS-YSAQRNEL-------FADVGTTGWG-DDASDEE 55
           ERR R +EQLQS ++++  +Y    + Y + R  L       FAD GTT W  DD  D++
Sbjct: 57  ERRTRQVEQLQSKNIQLQKLYEPHTNDYVSSRASLLRAGSSAFADGGTTSWAVDDDDDDD 116

Query: 56  SPL-LGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITE 114
            PL +  +++D+   Q+ ++  QD+GLE L KVI+RQK I  TISNEV+ Q++++DD+ +
Sbjct: 117 KPLNVQVSVSDIMNHQEQILKEQDKGLEELCKVITRQKEIGQTISNEVEHQHEIIDDLAD 176

Query: 115 RMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
            MD T+ S+  +T QV +I ++D TCGYW+VII+LFIA V++A
Sbjct: 177 HMDRTDESLINKTQQVRNIHSKDRTCGYWIVIILLFIAIVVIA 219

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792150|gb|EFZ16202.1| hypothetical protein SINV_08115 [Solenopsis invicta]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 72/162 (44%), Positives = 105/162 (64%), Gaps = 9/162 (5%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS-YSAQRNEL-------FADVGTTGWGDDASDEES 56
           ERR R +EQLQS  +++  +Y+ R + Y + R  L       FAD GTT W  D  D++ 
Sbjct: 6   ERRTRQVEQLQSKDIQLQKLYDPRTNDYVSSRATLLRAGSSAFADGGTTSWAADDDDDDK 65

Query: 57  PL-LGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITER 115
           PL +  ++ D+   Q   +  QD+GLE L KVI+RQK I  TIS EVD QN+++DD+ + 
Sbjct: 66  PLDVQVSVNDLMSYQDRALIEQDKGLEELCKVIARQKEIGQTISGEVDHQNEIIDDLADH 125

Query: 116 MDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
           MD T+ S+  +T QV +I ++D TCGYWVVI++LFIA V+++
Sbjct: 126 MDRTDESLINKTQQVRNIHSKDRTCGYWVVILILFIAIVVIS 167

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205777|gb|EFN84007.1| Syntaxin-8 [Harpegnathos saltator]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 103/161 (63%), Gaps = 8/161 (4%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNR-PSYSAQRNEL-------FADVGTTGWGDDASDEES 56
           ERR R +EQLQS  +++  +Y+ R   Y++ R  L       FAD GTT W  D  DE+ 
Sbjct: 57  ERRTRQVEQLQSRDIQLQKLYDPRTKDYASSRASLLKSGSSAFADGGTTSWAADEDDEKP 116

Query: 57  PLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERM 116
             +   + D+   Q+ ++  QD+GL+ L KVI+RQK I  +ISNEV+ QN+++DD+ + M
Sbjct: 117 INVQVTVTDLVTHQEQVLKEQDKGLDELCKVIARQKEIGQSISNEVNHQNEIIDDLADHM 176

Query: 117 DHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
           + T+ S+  +T QV +I ++D T  YWVVI++LFIA V+VA
Sbjct: 177 ERTDESLVNKTQQVRNIHSKDRTLVYWVVIVLLFIAIVVVA 217

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847227|ref|XP_003699256.1| PREDICTED: syntaxin-8-like isoform 1 [Megachile rotundata]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 9/164 (5%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS-YSAQRNEL-------FADVGTTGWGDDASDEES 56
           ERR R +E L+S  V++  +Y+ R + Y   R  L       FAD GTT W  D  D++ 
Sbjct: 83  ERRIRQIEILESRDVQLQKLYDARTNDYMYSRTNLLTSGGSVFADGGTTSWAADDDDDDK 142

Query: 57  PL-LGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITER 115
           PL    ++ D+  +Q  ++  QD+GLE L KVI+RQK I  TISNEVD QN+++D +   
Sbjct: 143 PLDTEVSVNDLMTRQDKILQEQDKGLEELCKVIARQKEIGQTISNEVDHQNEIIDGLANH 202

Query: 116 MDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL 159
           MD T+ S+  +T QV +I  +D TCGYWVVI +LFI+ ++V  +
Sbjct: 203 MDRTDESLINKTRQVQTITVKDRTCGYWVVITLLFISIIIVTLI 246

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847229|ref|XP_003699257.1| PREDICTED: syntaxin-8-like isoform 2 [Megachile rotundata]

 Score =  119 bits (299), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 9/164 (5%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS-YSAQRNEL-------FADVGTTGWGDDASDEES 56
           ERR R +E L+S  V++  +Y+ R + Y   R  L       FAD GTT W  D  D++ 
Sbjct: 57  ERRIRQIEILESRDVQLQKLYDARTNDYMYSRTNLLTSGGSVFADGGTTSWAADDDDDDK 116

Query: 57  PL-LGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITER 115
           PL    ++ D+  +Q  ++  QD+GLE L KVI+RQK I  TISNEVD QN+++D +   
Sbjct: 117 PLDTEVSVNDLMTRQDKILQEQDKGLEELCKVIARQKEIGQTISNEVDHQNEIIDGLANH 176

Query: 116 MDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL 159
           MD T+ S+  +T QV +I  +D TCGYWVVI +LFI+ ++V  +
Sbjct: 177 MDRTDESLINKTRQVQTITVKDRTCGYWVVITLLFISIIIVTLI 220

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030174|gb|EGI69968.1| Syntaxin-8 [Acromyrmex echinatior]

 Score =  118 bits (295), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 64/149 (42%), Positives = 94/149 (63%), Gaps = 8/149 (5%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS-YSAQRNEL-------FADVGTTGWGDDASDEES 56
           ERR R +EQLQS  +++  +Y  R + Y + R  L       FAD GTT W  D  D++ 
Sbjct: 71  ERRTRQVEQLQSKDIQLQKLYEPRTNDYMSSRTSLLRAGSSAFADGGTTSWAADDDDDKP 130

Query: 57  PLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERM 116
             +  ++ D+   Q+ ++  QD+GLE L KVI+RQK I  TISNEVD QN+++DD+ + M
Sbjct: 131 LNVQVSVNDLMSHQERVLIEQDKGLEELCKVIARQKEIGQTISNEVDHQNEIIDDLADHM 190

Query: 117 DHTNVSIQRETNQVTSILTQDATCGYWVV 145
           D T+ S+  +T QV +I ++D TCGYW+V
Sbjct: 191 DRTDESLINKTQQVRNINSKDRTCGYWIV 219

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247019|ref|NP_001156190.1| syntaxin-8-like [Acyrthosiphon pisum] gi|239790785|dbj|BAH71930.1| ACYPI005558 [Acyrthosiphon pisum]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 108/166 (65%), Gaps = 15/166 (9%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRP-SYSAQRNELF---------ADVGTTGW---GDDA 51
           ERRQR+LE LQS ++ +   + NR  S++ +R EL           ++ TTGW    DD 
Sbjct: 82  ERRQRMLELLQSRNILLNQRFQNRNNSHTLERQELMRPSTSKAKKTEMPTTGWLDSDDDD 141

Query: 52  SDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDD 111
            D++ PLL   +  +++QQQ ++  QD  L  L+ ++SRQK+IA+TIS+EVD+QN+LVDD
Sbjct: 142 YDDKQPLLSEKV--LKQQQQYLLKEQDDRLNELASIVSRQKSIAITISSEVDLQNELVDD 199

Query: 112 ITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
           +   MD T   I+ ET +V  IL +D+T G WV+II+L IANV+VA
Sbjct: 200 LLVAMDKTAAGIESETKEVVQILKKDSTRGLWVIIILLLIANVVVA 245

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407898|ref|XP_003488234.1| PREDICTED: syntaxin-8-like isoform 1 [Bombus impatiens]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 8/163 (4%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS--YSAQRNEL------FADVGTTGWGDDASDEES 56
           ERR R +E L+S  V++  + + R +   S++ N L      FAD GTT W  D  D++ 
Sbjct: 83  ERRIRQIEILKSRDVQLQKLCDARTNNLVSSRANLLTSGTSAFADGGTTSWAADDDDDKP 142

Query: 57  PLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERM 116
                 + D+  QQ  ++  Q++GLE L KVI+RQK I  TISNEVD QN+++D+++  M
Sbjct: 143 IDTQICVVDLMTQQDRILEEQNKGLEELCKVIARQKQIGQTISNEVDHQNEIIDNLSNHM 202

Query: 117 DHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL 159
           D T+ S+  +T  V +I  +D TCGYW+VII+LFI  V+VA L
Sbjct: 203 DRTDESLITKTQHVQTINFKDRTCGYWIVIILLFICIVIVALL 245

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407901|ref|XP_003488235.1| PREDICTED: syntaxin-8-like isoform 2 [Bombus impatiens]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/163 (42%), Positives = 101/163 (61%), Gaps = 8/163 (4%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNNRPS--YSAQRNEL------FADVGTTGWGDDASDEES 56
           ERR R +E L+S  V++  + + R +   S++ N L      FAD GTT W  D  D++ 
Sbjct: 62  ERRIRQIEILKSRDVQLQKLCDARTNNLVSSRANLLTSGTSAFADGGTTSWAADDDDDKP 121

Query: 57  PLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERM 116
                 + D+  QQ  ++  Q++GLE L KVI+RQK I  TISNEVD QN+++D+++  M
Sbjct: 122 IDTQICVVDLMTQQDRILEEQNKGLEELCKVIARQKQIGQTISNEVDHQNEIIDNLSNHM 181

Query: 117 DHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL 159
           D T+ S+  +T  V +I  +D TCGYW+VII+LFI  V+VA L
Sbjct: 182 DRTDESLITKTQHVQTINFKDRTCGYWIVIILLFICIVIVALL 224

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295335|ref|XP_316159.4| AGAP006100-PA [Anopheles gambiae str. PEST] gi|157015987|gb|EAA11622.4| AGAP006100-PA [Anopheles gambiae str. PEST]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 102/165 (61%), Gaps = 15/165 (9%)

Query: 5   ERRQRLLEQLQSSSVKITNMYNN-RPSYSAQRNELFADVGTTGWGDDA------SDEESP 57
           ERRQR +E LQS  +++   +    P+  A R+ LF   G+ G G  A       D++ P
Sbjct: 80  ERRQRRIEALQSKLIQLQRQFQYVEPA--AARSALFETNGS-GRGRGAVAFADDDDDDDP 136

Query: 58  LL-----GANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDI 112
            L       ++AD+R QQ  ++  Q++GLEALS+VI+RQK +A  I  EVD  ND++DD+
Sbjct: 137 ALIPTNSNYSVADLRNQQTRILEDQNEGLEALSQVIARQKELATRIGGEVDRHNDILDDL 196

Query: 113 TERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
            + M+ T+  I RET Q+ +I TQD+T GYW+VI +LF+A VLV 
Sbjct: 197 AQTMETTDGRINRETRQIGAITTQDSTWGYWIVIGLLFVAIVLVG 241

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
UNIPROTKB|F1P0S2	236	STX8 "Uncharacterized protein"	0.943	0.635	0.348	1.5e-19
RGD|61917	236	Stx8 "syntaxin 8" [Rattus norv	0.962	0.648	0.335	2.5e-19
UNIPROTKB|Q9UNK0	236	STX8 "Syntaxin-8" [Homo sapien	0.962	0.648	0.329	4e-19
MGI|MGI:1890156	236	Stx8 "syntaxin 8" [Mus musculu	0.962	0.648	0.322	1.1e-18
FB|FBgn0036643	232	Syx8 "Syntaxin 8" [Drosophila	0.893	0.612	0.331	2.2e-18
UNIPROTKB|Q3T075	236	STX8 "Syntaxin-8" [Bos taurus	0.962	0.648	0.322	5.8e-18
DICTYBASE|DDB_G0288439	250	syn8B "putative t-SNARE family	0.955	0.608	0.281	9.9e-11
DICTYBASE|DDB_G0275429	152	syn8A "t-SNARE family protein"	0.880	0.921	0.282	3.2e-10
UNIPROTKB|F1PSP3	176	STX8 "Uncharacterized protein"	0.641	0.579	0.336	2.2e-09
RGD|61915	255	Stx6 "syntaxin 6" [Rattus norv	0.918	0.572	0.253	2.2e-08

UNIPROTKB|F1P0S2 STX8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 55/158 (34%), Positives = 91/158 (57%)

Query:     5 ERRQRLLEQLQSSSVKITNMYNNRPSY-SAQRNELFADV---GTTG-WGDDASDEESPLL 59
             +RRQ L++ L +   ++ + Y N  +     R+ L A     G T  W  + S+E     
Sbjct:    77 DRRQNLVDDLLTRQKQLQSSYKNEGTEPDVIRSSLMAGGVKRGVTNPWLLEESEETR--- 133

Query:    60 GANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHT 119
             G    D+R+QQ+ +I  QD GL+ALS +ISRQK +   I NE+D QN+++DD+T  +++T
Sbjct:   134 GLGFDDIRQQQRRIIEEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLTNLVENT 193

Query:   120 NVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
             +  ++ +T  V  +  +  +CG  VVI++L IA  +VA
Sbjct:   194 DSKLRTQTRHVKMVDRKSTSCGMLVVIVLLLIAIAVVA 231

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

RGD|61917 Stx8 "syntaxin 8" [Rattus norvegicus (taxid:10116)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 52/155 (33%), Positives = 89/155 (57%)

Query:     5 ERRQRLLEQLQSSSVKITNMYNNRPSY-SAQRNELFADVGTTGWGDD-ASDEESPLLGAN 62
             +RRQ LL+ L +    +   + N  S     R+ L ++    G  +    +E     G  
Sbjct:    77 DRRQNLLDDLVTRERLLLASFKNEGSEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLG 136

Query:    63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVS 122
               ++R+QQQ +I  QD GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  
Sbjct:   137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query:   123 IQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
             ++ E  +VT +  + A+CG  +VI++L +A V+VA
Sbjct:   197 LRTEARRVTLVDRKSASCGMIMVILLLLVAIVVVA 231

GO:0005765 "lysosomal membrane" evidence=IDA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0031902 "late endosome membrane" evidence=IDA

UNIPROTKB|Q9UNK0 STX8 "Syntaxin-8" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 51/155 (32%), Positives = 89/155 (57%)

Query:     5 ERRQRLLEQLQSSS-VKITNMYNNRPSYSAQRNELFADVGTTGWGDD-ASDEESPLLGAN 62
             +RRQ LL+ L +   + + +  N        R+ L ++    G  +    +E     G  
Sbjct:    77 DRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMSEEAKRGAPNPWLFEEPEETRGLG 136

Query:    63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVS 122
               ++R+QQQ +I  QD GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  
Sbjct:   137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query:   123 IQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
             ++ ET +V  +  + A+CG  +VI++L +A V+VA
Sbjct:   197 LRNETRRVNMVDRKSASCGMIMVILLLLVAIVVVA 231

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=IEA

GO:0031201 "SNARE complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006810 "transport" evidence=TAS

MGI|MGI:1890156 Stx8 "syntaxin 8" [Mus musculus (taxid:10090)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 50/155 (32%), Positives = 88/155 (56%)

Query:     5 ERRQRLLEQLQSSS-VKITNMYNNRPSYSAQRNELFADVGTTGWGDD-ASDEESPLLGAN 62
             +RRQ LL+ L +   + + +  N        R+ L ++    G  +    +E     G  
Sbjct:    77 DRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMSEEAKRGTPNPWLCEEPEETRGLG 136

Query:    63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVS 122
               ++R+QQQ +I  QD GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  
Sbjct:   137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query:   123 IQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
             ++ E  +VT +  +  +CG  +VI++L +A V+VA
Sbjct:   197 LRTEARRVTLVDRKSTSCGMIMVILLLLVAIVVVA 231

GO:0005765 "lysosomal membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=ISO

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

GO:0031201 "SNARE complex" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0031902 "late endosome membrane" evidence=ISO

FB|FBgn0036643 Syx8 "Syntaxin 8" [Drosophila melanogaster (taxid:7227)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/148 (33%), Positives = 84/148 (56%)

Query:     9 RLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVRE 68
             RL  QL+    K  N  ++R +  A     + D    G G   S   + L   ++  +++
Sbjct:    88 RLTSQLREIREKFAN--SSRSNVPAASGSAWQDQDL-GPGHSNSSRNTAL---DVEALKQ 141

Query:    69 QQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETN 128
             ++  M+A Q++GLE LS  +SRQ+ +A  + NEV+ QN+++D++   MD     +QRET 
Sbjct:   142 KKTEMLAQQNEGLEVLSATLSRQRQLATQLGNEVEDQNNILDNLANAMDRVETGVQRETQ 201

Query:   129 QVTSILTQDATCGYWVVIIVLFIANVLV 156
              +  +  +D+T GYW+VII LF+A ++V
Sbjct:   202 SIGQVNRRDSTWGYWLVIIALFVAIIVV 229

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0007269 "neurotransmitter secretion" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q3T075 STX8 "Syntaxin-8" [Bos taurus (taxid:9913)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 50/155 (32%), Positives = 86/155 (55%)

Query:     5 ERRQRLLEQLQSSS-VKITNMYNNRPSYSAQRNELFADVGTTGWGDD-ASDEESPLLGAN 62
             +RRQ LL+ L +   + + +  N        R+ L       G  +    +E     G  
Sbjct:    77 DRRQNLLDDLVTRERLLLASFKNEGAEPDLIRSSLMTGGAKRGAPNPWLLEEPEETRGLG 136

Query:    63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVS 122
               ++R+QQQ +I  QD GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  
Sbjct:   137 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEK 196

Query:   123 IQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157
             ++ ET +V  +  +  +CG  +VI++L +A V+VA
Sbjct:   197 LRTETRRVNLVDRKSTSCGMIMVILLLLVAIVVVA 231

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0288439 syn8B "putative t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 151 (58.2 bits), Expect = 9.9e-11, P = 9.9e-11
 Identities = 45/160 (28%), Positives = 80/160 (50%)

Query:     6 RRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
             RR+  +E L S   ++ +  +   + ++Q+NEL  +    G G        P        
Sbjct:    78 RRKNKVESLISMKNQLNSTLDAAINNTSQKNELMGNNNGVGIGYSNRQFGKPKETEATKQ 137

Query:    66 VREQQ-----QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTN 120
                QQ     Q ++  QD+ L+ LS+ I RQKN+A  +SNE+D  N+++DD+    D  +
Sbjct:   138 FDNQQLFTNQQHIMREQDESLDLLSQSIMRQKNMAHAMSNELDQHNEMLDDVEIGTDAVS 197

Query:   121 VSIQRETNQVTSILTQDA--TCGYWVVIIVLFIANVLVAT 158
             + + R  N+    + Q+A  TC    ++I++ +  VL+AT
Sbjct:   198 MRL-RNANRRMETIKQNAGSTCMIVCIVILIILIVVLIAT 236

GO:0006810 "transport" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0275429 syn8A "t-SNARE family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 41/145 (28%), Positives = 74/145 (51%)

Query:    16 SSSVKITNMYNNRPSYSAQ-RNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMI 74
             +S+     + + +P  S   RN LF       WG++ ++    L  +N  DV E+Q+  +
Sbjct:     8 NSNFNSNRISSTQPYLSDDARNALFEGKDRK-WGNNNNNNYDTL--SN-QDVFEKQKRDM 63

Query:    75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
               QD+ L+ALS  ISR K+ A+TI+     Q D++D++   +D T+  ++  T  + ++ 
Sbjct:    64 EEQDKMLDALSGSISRVKDTAITINKTAQEQTDMLDELDVHVDSTSARMRNTTKNLITLT 123

Query:   135 TQDATCGYWVVIIVLFIANVLVATL 159
              Q  T GY   I  L +  +++  L
Sbjct:   124 QQSKTTGYCSAICFLLLVLLVIIIL 148

GO:0031201 "SNARE complex" evidence=IDA

GO:0010008 "endosome membrane" evidence=IEA;IDA

GO:0008333 "endosome to lysosome transport" evidence=IDA

GO:0006906 "vesicle fusion" evidence=IDA

GO:0006810 "transport" evidence=IEA;ISS

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|F1PSP3 STX8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 35/104 (33%), Positives = 53/104 (50%)

Query:     5 ERRQRLLEQLQSSS-VKITNMYNNRPSYSAQRNELFADVGTTGWGDD-ASDEESPLLGAN 62
             +RRQ LL++L +   + + +  N        R+ L       G  +    +E     G  
Sbjct:    73 DRRQNLLDELVTRERLLVASFKNEGAEPDLIRSSLMTGGAKRGVANPWLFEEPEETRGLG 132

Query:    63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQN 106
               ++R+QQQ +I  QD GL+ALS +ISRQK +   I NE+D QN
Sbjct:   133 FDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGKEIGNELDEQN 176

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

RGD|61915 Stx6 "syntaxin 6" [Rattus norvegicus (taxid:10116)]

 Score = 131 (51.2 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 38/150 (25%), Positives = 71/150 (47%)

Query:    12 EQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTG-WGDDASDEESPLLGAN-IADVREQ 69
             +Q+ +SSV+      NR +     +    D G T  +G    D E  L  ++ I + + Q
Sbjct:   104 DQMSASSVQALAERKNRQALLGDSSSQNWDAGVTDRYG--RLDRELQLANSHFIEEQQAQ 161

Query:    70 QQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQ 129
             QQ+++  QD+ LE +S  I   KN++  I  E++ Q  ++DD +  ++ T   +     +
Sbjct:   162 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKK 221

Query:   130 VTSILTQDATCGYWVVIIVLFIANVLVATL 159
             +  +    +    W  I +LF   ++V TL
Sbjct:   222 LAKVSHMTSDRRQWCAIAILFAVLLVVLTL 251

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005769 "early endosome" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006906 "vesicle fusion" evidence=IEA;ISO

GO:0007032 "endosome organization" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0031201 "SNARE complex" evidence=IEA;ISO

GO:0032588 "trans-Golgi network membrane" evidence=ISO;IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO

GO:0048193 "Golgi vesicle transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
pfam05739	62	pfam05739, SNARE, SNARE domain	1e-07
smart00397	66	smart00397, t_SNARE, Helical region found in SNARE	4e-07
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	8e-07

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 77  QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQV 130
           +D+ LE L   I   K + L +  EV+ Q +L+D I + +D+T   ++R   ++
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRL 54

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs

 Score = 44.9 bits (107), Expect = 4e-07
 Identities = 16/66 (24%), Positives = 33/66 (50%)

Query: 68  EQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRET 127
           +Q       +D+ LE L K I   K I L +  E++ Q + +D I + +D  +V++++  
Sbjct: 1   QQALAREEERDEELEQLEKSIQELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60

Query: 128 NQVTSI 133
            ++   
Sbjct: 61  KRLKKA 66

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs". Length = 66

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 43.6 bits (104), Expect = 8e-07
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 77  QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133
           +D+ LE L   I   K I L +  EV+ Q +L+D I + +D+ +V+++R   ++   
Sbjct: 4   RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG3202|consensus	235		99.96
KOG3385|consensus	118		99.6
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.51
KOG0809|consensus	305		99.41
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	99.29
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.27
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	99.26
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	99.22
KOG0810|consensus	297		99.13
KOG0811|consensus	269		99.12
KOG3065|consensus	273		99.01
KOG0812|consensus	311		98.86
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	98.49
KOG2678|consensus	244		98.16
KOG1666|consensus	220		98.16
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	97.58
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.29
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	97.28
KOG0860|consensus	116		97.13
KOG3894|consensus	316		97.1
KOG3202|consensus	235		96.94
KOG3208|consensus	231		96.88
KOG0810|consensus	297		96.82
KOG3251|consensus	213		96.76
KOG0811|consensus	269		96.6
KOG0809|consensus	305		95.43
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	93.83
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	93.62
KOG0860|consensus	116		93.33
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	93.12
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	92.46
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	92.34
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	91.41
KOG3065|consensus	273		89.89
KOG0812|consensus	311		87.64
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	87.59
PF11166	98	DUF2951: Protein of unknown function (DUF2951); In	86.83
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	86.81
PF00523	490	Fusion_gly: Fusion glycoprotein F0; InterPro: IPR0	85.69
PHA03386	94	P10 fibrous body protein; Provisional	85.58
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	82.08
PF09680	24	Tiny_TM_bacill: Protein of unknown function (Tiny_	81.24
PHA03240	258	envelope glycoprotein M; Provisional	80.03

>KOG3202|consensus

Probab=99.96  E-value=7.3e-28  Score=187.97  Aligned_cols=154  Identities=24%  Similarity=0.435  Sum_probs=129.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHhhhhhhcCCCCCCCCCCCCccCccccCC-HHHHHHHHHHHHHHHHH
Q psy7328           2 SSFERRQRLLEQLQSSSVKITNMYNNRP-SYSAQRNELFADVGTTGWGDDASDEESPLLGAN-IADVREQQQMMIAAQDQ   79 (159)
Q Consensus         2 ~E~~rR~~~v~~L~~~~~~l~~~~~~~~-~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~q~~~~~eqD~   79 (159)
                      .|+.+|+.++..+++++.+++..|.... .+...|..+++...+ +   +..+...+..+++ .+...++|++++++||+
T Consensus        77 ~El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~-~---~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe  152 (235)
T KOG3202|consen   77 FELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKS-P---NLDEAMSRASGLDNVQEIVQLQQQMLQEQDE  152 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCC-C---chhhhHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999998632 223457777764221 1   1122333344578 59999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhC
Q psy7328          80 GLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL  159 (159)
Q Consensus        80 ~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l~~~  159 (159)
                      +||.|+++|+++|++|..||+|+++|+.+||++++.||.|..+|.++++++.++.+..++|.+||+|++|+++++++++|
T Consensus       153 ~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lvv~i  232 (235)
T KOG3202|consen  153 GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLVVII  232 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888899999998888877766653

>KOG3385|consensus

Probab=99.60  E-value=1.4e-14  Score=100.72  Aligned_cols=81  Identities=20%  Similarity=0.379  Sum_probs=68.2

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHH
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT-CGYWVVIIVLFIAN  153 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~-~~~~~iI~~L~v~i  153 (159)
                      .|.|+.++.|.+.|..||.++.+|++|++.||++||.|++++|.|...|.+++.+++.+.+.++. -.+|++++++++++
T Consensus        32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~f  111 (118)
T KOG3385|consen   32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVAFF  111 (118)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999999999999999999988432 23344444444444


Q ss_pred             HH
Q psy7328         154 VL  155 (159)
Q Consensus       154 v~  155 (159)
                      |+
T Consensus       112 i~  113 (118)
T KOG3385|consen  112 IL  113 (118)
T ss_pred             Hh
Confidence            43

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.51  E-value=1.7e-13  Score=86.68  Aligned_cols=62  Identities=24%  Similarity=0.463  Sum_probs=59.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328          76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD  137 (159)
Q Consensus        76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~  137 (159)
                      ++|+.|+.|+.+|.+|+++|.+|+.||++|+++||+|+++|+.|...+++++++|+++.++.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~   62 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999999998764

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>KOG0809|consensus

Probab=99.41  E-value=2.1e-12  Score=102.97  Aligned_cols=152  Identities=14%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC-------CChHHhhhhhhcCCCCCCCCCCCCccCccccCCH--HHHH--HHHH
Q psy7328           3 SFERRQRLLEQLQSSSVKITNMYNNRP-------SYSAQRNELFADVGTTGWGDDASDEESPLLGANI--ADVR--EQQQ   71 (159)
Q Consensus         3 E~~rR~~~v~~L~~~~~~l~~~~~~~~-------~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--q~q~   71 (159)
                      |.-=|+++...+..+++.+...|+..+       ...+.+..-+.. +..+....+.+++-.  ++.+  ++++  +...
T Consensus       134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~-~~~~~~~~~dd~d~~--~~~~qe~ql~~~e~~~  210 (305)
T KOG0809|consen  134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYED-SLDNTVDLPDDEDFS--DRTFQEQQLMLFENNE  210 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhh-hccccccCcchhhhh--hhhHHHHHHHHHhcch
Confidence            344567888888889999988888643       122222221211 111111111111111  1122  1111  1223


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy7328          72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFI  151 (159)
Q Consensus        72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v  151 (159)
                      .+..+.++.+..+..+|..|.+|+.+++.-|-+|+.++|+||.++++|..+++.|.+.|.|+..+.+..+.++||++|++
T Consensus       211 ~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l  290 (305)
T KOG0809|consen  211 EVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTL  290 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHH
Confidence            34456788899999999999999999999999999999999999999999999999999999988765555555555554


Q ss_pred             HHHHHH
Q psy7328         152 ANVLVA  157 (159)
Q Consensus       152 ~iv~l~  157 (159)
                      ++|+++
T Consensus       291 ~ii~ll  296 (305)
T KOG0809|consen  291 LIIALL  296 (305)
T ss_pred             HHHHHH
Confidence            444443

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=99.29  E-value=5.1e-11  Score=94.36  Aligned_cols=92  Identities=20%  Similarity=0.377  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC---CchHH
Q psy7328          67 REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA---TCGYW  143 (159)
Q Consensus        67 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~---~~~~~  143 (159)
                      ..+|+-+..+.|+.+..|+.+|..+.+|+.+++.-|.+|+.+.|+|+.++++|...++.|.+.|.++..+.+   .|+++
T Consensus       183 ~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~  262 (283)
T COG5325         183 LEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFY  262 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhh
Confidence            466777888999999999999999999999999999999999999999999999999999999999997654   57777


Q ss_pred             HHHHHHHHHHHHHHh
Q psy7328         144 VVIIVLFIANVLVAT  158 (159)
Q Consensus       144 ~iI~~L~v~iv~l~~  158 (159)
                      |++++++|++|++.+
T Consensus       263 ~Llil~vv~lfv~l~  277 (283)
T COG5325         263 LLLILLVVLLFVSLI  277 (283)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777776666665543

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.27  E-value=3.2e-11  Score=74.91  Aligned_cols=59  Identities=29%  Similarity=0.522  Sum_probs=56.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI  133 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~  133 (159)
                      .++++.++.|+..+.+++.++.+|+.+|..|+++||+|+++++.+...++.+.+++.++
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka   60 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA   60 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999999999999863

>smart00397 t_SNARE Helical region found in SNAREs

Probab=99.26  E-value=5e-11  Score=75.24  Aligned_cols=64  Identities=25%  Similarity=0.453  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328          70 QQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI  133 (159)
Q Consensus        70 q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~  133 (159)
                      +.+++.++|+.++.|+..+.++++++.+|+.+|..|+++||+++++++.+...++.+.++++++
T Consensus         3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~   66 (66)
T smart00397        3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA   66 (66)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence            4567899999999999999999999999999999999999999999999999999999998763

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=99.22  E-value=7.8e-10  Score=88.00  Aligned_cols=95  Identities=19%  Similarity=0.355  Sum_probs=80.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328          60 GANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT  139 (159)
Q Consensus        60 ~~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~  139 (159)
                      ..+.+..+++|+.   .||+-.+.|..-...||+.+..+++-|...+..|+.....+|+....|+.+..+++...+++.+
T Consensus       151 ~~~~e~~l~~~~~---~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~  227 (251)
T PF09753_consen  151 QASLEKILQHHRN---LQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG  227 (251)
T ss_pred             cccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3556677777775   7888899999999999999999999999999999999999999999999999999999887777


Q ss_pred             chHHHHHHHHHHHHHHHH
Q psy7328         140 CGYWVVIIVLFIANVLVA  157 (159)
Q Consensus       140 ~~~~~iI~~L~v~iv~l~  157 (159)
                      |++|++|+++++++|+++
T Consensus       228 ~~~~~~i~~v~~~Fi~mv  245 (251)
T PF09753_consen  228 CWTWLMIFVVIIVFIMMV  245 (251)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            877877666555544333

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0810|consensus

Probab=99.13  E-value=3.1e-10  Score=92.09  Aligned_cols=64  Identities=14%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA  138 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~  138 (159)
                      ++.-..+-.|..++..|++++.+|...|+.|++++|+|+.+|.++...+..+...++++..+.+
T Consensus       202 q~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qk  265 (297)
T KOG0810|consen  202 QERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQK  265 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445678999999999999999999999999999999999999999999999999998887654

>KOG0811|consensus

Probab=99.12  E-value=1.1e-09  Score=87.57  Aligned_cols=71  Identities=23%  Similarity=0.321  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328          68 EQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA  138 (159)
Q Consensus        68 q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~  138 (159)
                      .++..++++.++.+..|+..|..+.+|+.+++.-|.+|++++|.|+++|++|...+..++..|.++.++..
T Consensus       169 ~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~  239 (269)
T KOG0811|consen  169 EYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQR  239 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788899999999999999999999999999999999999999999999999999999999998654

>KOG3065|consensus

Probab=99.01  E-value=1.2e-09  Score=87.49  Aligned_cols=60  Identities=27%  Similarity=0.572  Sum_probs=57.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~  134 (159)
                      +++|+.|++|+..+++||.||.+||.||+.||+.||+|++.+|+...++..+++++++++
T Consensus       214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            479999999999999999999999999999999999999999999999999999999874

>KOG0812|consensus

Probab=98.86  E-value=1.1e-07  Score=75.98  Aligned_cols=81  Identities=16%  Similarity=0.264  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC-C
Q psy7328          68 EQQQMMIAAQDQG-------LEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA-T  139 (159)
Q Consensus        68 q~q~~~~~eqD~~-------Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~-~  139 (159)
                      ++|..+++++|++       +..++.+|.+|.+|+..+..-|.+|.+++-+||++||.+...+..|...|.+.....+ +
T Consensus       209 qqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSN  288 (311)
T KOG0812|consen  209 QQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSN  288 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccc
Confidence            5666677777654       6789999999999999999999999999999999999999999999999998887655 5


Q ss_pred             chHHHHHHH
Q psy7328         140 CGYWVVIIV  148 (159)
Q Consensus       140 ~~~~~iI~~  148 (159)
                      .|+++=||.
T Consensus       289 RwLmvkiF~  297 (311)
T KOG0812|consen  289 RWLMVKIFG  297 (311)
T ss_pred             hHHHHHHHH
Confidence            555554443

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.49  E-value=2.4e-06  Score=66.72  Aligned_cols=63  Identities=13%  Similarity=0.224  Sum_probs=57.4

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD  137 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~  137 (159)
                      +..-..+-.|..++..|-+++.+|.++|-+|.++.|-|+.++..++..+..++..+.+..+..
T Consensus       181 q~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avksa  243 (280)
T COG5074         181 QARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSA  243 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHH
Confidence            344567899999999999999999999999999999999999999999999999998888754

>KOG2678|consensus

Probab=98.16  E-value=4.9e-05  Score=58.94  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc-CCch
Q psy7328          63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD-ATCG  141 (159)
Q Consensus        63 ~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~-~~~~  141 (159)
                      +++.++.|+-+   |.+-.+.|..-++-+|..+.+.++-+++.|+.+......+|.....|..+..++.+-.++. +.|.
T Consensus       142 ~dq~l~~q~~l---QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf  218 (244)
T KOG2678|consen  142 VDQQLEDQDTL---QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWF  218 (244)
T ss_pred             HHHHHHhhhHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHH
Confidence            44444444443   3455667788888999999999999999999999999999999999999999999988876 4677


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy7328         142 YWVVIIVLFIANVLVAT  158 (159)
Q Consensus       142 ~~~iI~~L~v~iv~l~~  158 (159)
                      +|.+|++.|+.+|..|+
T Consensus       219 ~~~miI~v~~sFVsMil  235 (244)
T KOG2678|consen  219 YITMIIFVILSFVSMIL  235 (244)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777666665554443

>KOG1666|consensus

Probab=98.16  E-value=0.00015  Score=55.92  Aligned_cols=64  Identities=13%  Similarity=0.239  Sum_probs=55.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA  138 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~  138 (159)
                      ..--+-|..-+.++...-+||..|-++|..|.+.|.+--+-.-.|++.|.++.+-++.+.++.-
T Consensus       131 eRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~  194 (220)
T KOG1666|consen  131 ERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI  194 (220)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence            3334556677778888999999999999999999999999999999999999999999997654

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=97.58  E-value=0.0032  Score=42.58  Aligned_cols=80  Identities=8%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHH
Q psy7328          78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA-TCGYWVVIIVLFIANVLV  156 (159)
Q Consensus        78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~-~~~~~~iI~~L~v~iv~l  156 (159)
                      .+.|......+..--+.+..-.++|.+|++.|..+++..+...+.|..+.+-++++.+... +.+++.+.+++|++.|+.
T Consensus         7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y   86 (92)
T PF03908_consen    7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY   86 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4456666666666667778888899999999999999999999999999999999998765 344333333444444433


Q ss_pred             H
Q psy7328         157 A  157 (159)
Q Consensus       157 ~  157 (159)
                      |
T Consensus        87 I   87 (92)
T PF03908_consen   87 I   87 (92)
T ss_pred             H
Confidence            3

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.29  E-value=0.0037  Score=41.82  Aligned_cols=56  Identities=9%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhH---HhhhHHHHHHHHHHHHHH
Q psy7328          79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERM---DHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~v---d~t~~~l~~~~~~l~~~~  134 (159)
                      +.+..+...+...+++-..=-+.+-+-++-|+.|.+..   .......++..+++++-.
T Consensus         3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~   61 (89)
T PF00957_consen    3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM   61 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34455555555555443333334444445555555443   334444455555555444

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=97.28  E-value=0.0079  Score=37.91  Aligned_cols=62  Identities=8%  Similarity=0.272  Sum_probs=56.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ  136 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~  136 (159)
                      ....+.|+.-...+....++|.++..+|..|++.|..+...++.+...+..+.+-++.+.++
T Consensus         4 ~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    4 LRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            34455788889999999999999999999999999999999999999999999999988754

>KOG0860|consensus

Probab=97.13  E-value=0.011  Score=41.68  Aligned_cols=59  Identities=8%  Similarity=0.290  Sum_probs=26.1

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhh---hHHHHHHHHHHHHHHhhcCCchHHHHH
Q psy7328          76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHT---NVSIQRETNQVTSILTQDATCGYWVVI  146 (159)
Q Consensus        76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t---~~~l~~~~~~l~~~~~~~~~~~~~~iI  146 (159)
                      +-|+-.+-+...|...-           +-.+-||+|++..|.-   .+.-+++..++++-+-. .+|.+++|+
T Consensus        37 QvdeVv~IMr~NV~KVl-----------ER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wW-kn~Km~~il   98 (116)
T KOG0860|consen   37 QVDEVVDIMRENVEKVL-----------ERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWW-KNCKMRIIL   98 (116)
T ss_pred             HHHHHHHHHHHhHHHHH-----------HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            34555555555544433           2233455555554443   33444444444443332 234444433

>KOG3894|consensus

Probab=97.10  E-value=0.019  Score=46.85  Aligned_cols=84  Identities=11%  Similarity=0.133  Sum_probs=68.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy7328          75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANV  154 (159)
Q Consensus        75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv  154 (159)
                      .+|.+....+...+-.+-.+=.-+.+=|-.|..-+|.|.+.+..|+..++.++..++++...++..+-|.++++|+..++
T Consensus       228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~  307 (316)
T KOG3894|consen  228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS  307 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            45566677777777777777788888999999999999999999999999999999999998887777777666665555


Q ss_pred             HHHh
Q psy7328         155 LVAT  158 (159)
Q Consensus       155 ~l~~  158 (159)
                      ++++
T Consensus       308 lLFl  311 (316)
T KOG3894|consen  308 LLFL  311 (316)
T ss_pred             HHHH
Confidence            5543

>KOG3202|consensus

Probab=96.94  E-value=0.039  Score=43.68  Aligned_cols=94  Identities=10%  Similarity=0.093  Sum_probs=76.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCc
Q psy7328          61 ANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATC  140 (159)
Q Consensus        61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~  140 (159)
                      ...+.+++.|..-++.....+..+.+......+=-..=+.-++....-+|.++..++++..++...++    .....+.|
T Consensus       141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~----~~s~~~~~  216 (235)
T KOG3202|consen  141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR----MASQCSQW  216 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccch
Confidence            34566678888888888888888877777777666666778889999999999999999999988775    56788899


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q psy7328         141 GYWVVIIVLFIANVLVAT  158 (159)
Q Consensus       141 ~~~~iI~~L~v~iv~l~~  158 (159)
                      |...++|++++++|++++
T Consensus       217 ~~il~l~~~~~lvv~i~~  234 (235)
T KOG3202|consen  217 CAILLLVGLLLLVVIIFI  234 (235)
T ss_pred             hHHHHHHHHHHHHHHHhc
Confidence            999988888888887775

>KOG3208|consensus

Probab=96.88  E-value=0.12  Score=40.38  Aligned_cols=61  Identities=7%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328          78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA  138 (159)
Q Consensus        78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~  138 (159)
                      ...++.-...+.++-.+|.+..+-+..|+.+|..+...|..+..++-..+.-+.++..+.+
T Consensus       148 ~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkr  208 (231)
T KOG3208|consen  148 HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKR  208 (231)
T ss_pred             hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            3467777788888899999999999999999999999999999999999999999886544

>KOG0810|consensus

Probab=96.82  E-value=0.017  Score=47.24  Aligned_cols=77  Identities=9%  Similarity=0.200  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHH
Q psy7328          65 DVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWV  144 (159)
Q Consensus        65 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~  144 (159)
                      ++..++. -+.+.+..+..|+..-..+..+-..=|+.|+.=..-..+-.+.|+++.+.++.|.+.    -+++..|.++|
T Consensus       200 Eiq~Rh~-~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~----qkkaRK~k~i~  274 (297)
T KOG0810|consen  200 EIQERHD-EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKY----QKKARKWKIII  274 (297)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhceeee
Confidence            3334443 567889999999999999998888888889888888888888889999999888644    44444443333


Q ss_pred             HH
Q psy7328         145 VI  146 (159)
Q Consensus       145 iI  146 (159)
                      +|
T Consensus       275 ii  276 (297)
T KOG0810|consen  275 II  276 (297)
T ss_pred             eh
Confidence            33

>KOG3251|consensus

Probab=96.76  E-value=0.055  Score=42.02  Aligned_cols=118  Identities=9%  Similarity=0.100  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCC-------ChHHhhhhhhcCCCCCCCCCCCCccCccccCCHHHHHHHHHHHHHHHHHhHHH
Q psy7328          11 LEQLQSSSVKITNMYNNRPS-------YSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEA   83 (159)
Q Consensus        11 v~~L~~~~~~l~~~~~~~~~-------~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~~~eqD~~Ld~   83 (159)
                      +.+|..++..++...+...+       ...+|.+|++.    +++++++.-.-|   .  ++.++.        +..|..
T Consensus        71 ~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~----~~~~~~~~~~~~---~--D~el~~--------~d~l~~  133 (213)
T KOG3251|consen   71 VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDR----RFTNGATGTSIP---F--DEELQE--------NDSLKR  133 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC----CCCCCCccCCCc---c--hHHHHh--------hhHHHH
Confidence            77788887777776654321       12235555543    232222111111   1  222222        334566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC-Cch-HHHH
Q psy7328          84 LSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA-TCG-YWVV  145 (159)
Q Consensus        84 l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~-~~~-~~~i  145 (159)
                      -+..+..+-..|.+|=+-+.+|+..|-.....+-.....|.-.+.-|+-+.+... +|+ +|+-
T Consensus       134 s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G  197 (213)
T KOG3251|consen  134 SHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGG  197 (213)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHH
Confidence            6666677777899999999999999999999999999999888888888877664 444 3443

>KOG0811|consensus

Probab=96.60  E-value=0.078  Score=42.78  Aligned_cols=74  Identities=8%  Similarity=0.154  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328          63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ  136 (159)
Q Consensus        63 ~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~  136 (159)
                      ...+.+...+-+.+.+..+-.+......|..|-..=|+-|+.=..-++....+|..+...|.+|.+.=++..+.
T Consensus       171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~  244 (269)
T KOG0811|consen  171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK  244 (269)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            44555666778888899999999999999999999999999999999999999999999999998665554433

>KOG0809|consensus

Probab=95.43  E-value=0.26  Score=40.14  Aligned_cols=93  Identities=11%  Similarity=0.184  Sum_probs=74.9

Q ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCch
Q psy7328          62 NIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCG  141 (159)
Q Consensus        62 ~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~  141 (159)
                      .+++......+.+.+--+.+..|......|..+-.+=|.-|+.=.--++...-.++.+...|.+|.    ..-++++.++
T Consensus       208 ~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~  283 (305)
T KOG0809|consen  208 NNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMK  283 (305)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceE
Confidence            456677777788888899999999999999999999999999888888999999999998888877    4566778877


Q ss_pred             HHHHHHHHHHHHHHHHh
Q psy7328         142 YWVVIIVLFIANVLVAT  158 (159)
Q Consensus       142 ~~~iI~~L~v~iv~l~~  158 (159)
                      ++|+.++++|+++++++
T Consensus       284 ~i~~L~l~ii~llvlli  300 (305)
T KOG0809|consen  284 VILMLTLLIIALLVLLI  300 (305)
T ss_pred             ehHHHHHHHHHHHHHHH
Confidence            76666666666555544

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=93.83  E-value=1.1  Score=28.71  Aligned_cols=55  Identities=20%  Similarity=0.372  Sum_probs=34.2

Q ss_pred             HHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy7328          98 ISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANV  154 (159)
Q Consensus        98 i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv  154 (159)
                      +...++.+.+-++.++..-+.....+.....++.++.... +| .|-+|+..+|..|
T Consensus        11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~-kW-~~r~iiGaiI~~i   65 (71)
T PF10779_consen   11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT-KW-IWRTIIGAIITAI   65 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHH
Confidence            3445555666677777777777778888888888876553 34 4444444444333

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=93.62  E-value=1.9  Score=34.88  Aligned_cols=88  Identities=9%  Similarity=0.181  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH-
Q psy7328          67 REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV-  145 (159)
Q Consensus        67 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i-  145 (159)
                      .....+.+....+.+-.|......|..+-..=|.-|+.=..-|+....++..|...|.+|...=++..+. +-|++.++ 
T Consensus       190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~-~~~~Llil~  268 (283)
T COG5325         190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC-RFYLLLILL  268 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc-hhhHHHHHH
Confidence            4556667778888888888888888888888888888888888999999999999999999888886555 55555444 


Q ss_pred             HHHHHHHHHH
Q psy7328         146 IIVLFIANVL  155 (159)
Q Consensus       146 I~~L~v~iv~  155 (159)
                      |+++|+++++
T Consensus       269 vv~lfv~l~~  278 (283)
T COG5325         269 VVLLFVSLIK  278 (283)
T ss_pred             HHHHHHHHHH
Confidence            4444544443

>KOG0860|consensus

Probab=93.33  E-value=2  Score=30.31  Aligned_cols=62  Identities=19%  Similarity=0.285  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHH
Q psy7328          61 ANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRET  127 (159)
Q Consensus        61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~  127 (159)
                      ..++.+.+.|.|+=+--+-.-+.+...+.|--.++     ||++=.+.|..-...+.++..+|++-+
T Consensus        26 ~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~-----~L~drad~L~~~as~F~~~A~klkrk~   87 (116)
T KOG0860|consen   26 TANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLD-----ELDDRADQLQAGASQFEKTAVKLKRKM   87 (116)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666665544444444455555555555443     677777778888888999999888754

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=93.12  E-value=1.1  Score=29.25  Aligned_cols=61  Identities=11%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328          64 ADVREQQQMMIAAQDQGLEALSKVISRQKNIALT---ISNEVDVQNDLVDDITERMDHTNVSIQ  124 (159)
Q Consensus        64 ~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~---i~~El~~Q~~~Ld~l~~~vd~t~~~l~  124 (159)
                      +.++-.=++-+++-|+..+.|...|..++.-...   ++.-++.|...|+.++..|...++-|.
T Consensus         3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~   66 (75)
T PF05531_consen    3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN   66 (75)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4556666777888999999999999999887666   888899999999999998888777654

; GO: 0019028 viral capsid

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=92.46  E-value=2.1  Score=28.27  Aligned_cols=49  Identities=8%  Similarity=0.199  Sum_probs=28.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHH
Q psy7328          78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRET  127 (159)
Q Consensus        78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~  127 (159)
                      ++--+.+...+..+-+-+..+. +++...+-|.+-...+.+...++++..
T Consensus        13 ~~v~~im~~Ni~~ll~Rge~L~-~L~~kt~~L~~~a~~F~k~a~~l~r~~   61 (89)
T PF00957_consen   13 EEVKNIMRENIDKLLERGEKLE-ELEDKTEELSDNAKQFKKNAKKLKRKM   61 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4444444444444444454443 455666666777777777777776655

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=92.34  E-value=3.3  Score=32.92  Aligned_cols=60  Identities=13%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328          74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI  133 (159)
Q Consensus        74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~  133 (159)
                      +...++.+-.|..-..-..++-..=..-|+-=++-+.+...+|+.....+.+|-+..++.
T Consensus       187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa  246 (280)
T COG5074         187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA  246 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence            344444444444433333333333334455555566677788888888888888775443

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=91.41  E-value=2.3  Score=29.35  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328          76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR  125 (159)
Q Consensus        76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~  125 (159)
                      .|.+.++.|...|..+-+.=.....|++.|++.|+.|...+...+.||..
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~   99 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK   99 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            66777778888888877777777888888888888888777777766653

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>KOG3065|consensus

Probab=89.89  E-value=4.9  Score=32.61  Aligned_cols=78  Identities=12%  Similarity=0.181  Sum_probs=59.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328          61 ANIADVREQQQMMIAAQDQGLEALSKV---ISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD  137 (159)
Q Consensus        61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~---v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~  137 (159)
                      ..++....+++.+-...++.++.-..+   +..-+..|...-.+|.+|.++|++++.++|.....++.+-+.+..+-+-.
T Consensus        58 ~~~~~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~  137 (273)
T KOG3065|consen   58 EEDEEVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLF  137 (273)
T ss_pred             cchHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            445555555555555556666554443   45577889999999999999999999999999999999999998877655


Q ss_pred             C
Q psy7328         138 A  138 (159)
Q Consensus       138 ~  138 (159)
                      +
T Consensus       138 g  138 (273)
T KOG3065|consen  138 G  138 (273)
T ss_pred             c
Confidence            4

>KOG0812|consensus

Probab=87.64  E-value=9.4  Score=31.21  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328          71 QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS  132 (159)
Q Consensus        71 ~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~  132 (159)
                      -..|+..+-.+.+|++.-..|-.+-..=++-+..=....|+.+-+++.+...|-+...++..
T Consensus       226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS  287 (311)
T KOG0812|consen  226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS  287 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc
Confidence            34566778888888888888888888878888877888999999999999999888877754

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=87.59  E-value=8.5  Score=27.61  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=47.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328          77 QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT  135 (159)
Q Consensus        77 qD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~  135 (159)
                      .-..|+.+...+....++...|.+||.+=..-++++..+++..+..+..--.++..+-.
T Consensus        66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34567888888888899999999999888888888888888888888877777766543

The region featured in this family is approximately 100 amino acids long.

>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function

Probab=86.83  E-value=7.7  Score=26.37  Aligned_cols=69  Identities=12%  Similarity=0.140  Sum_probs=43.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc-CCchHHHH
Q psy7328          76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD-ATCGYWVV  145 (159)
Q Consensus        76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~-~~~~~~~i  145 (159)
                      ++|.-+..|...-..+..--..|.+-+..|....+.++-.+|..... +...++.++-..+. ..+.+|++
T Consensus         8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~n~Knir~~Kmwil   77 (98)
T PF11166_consen    8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKKNDKNIRDIKMWIL   77 (98)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence            55556666666666666666667777778888888888887774332 33444555555443 34667764

It has a highly conserved sequence.

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=86.81  E-value=13  Score=29.38  Aligned_cols=66  Identities=8%  Similarity=0.128  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHH
Q psy7328          90 RQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD----ATCGYWVVIIVLFIANVL  155 (159)
Q Consensus        90 ~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~----~~~~~~~iI~~L~v~iv~  155 (159)
                      .+-.+|..+.+-...=+..|.+=...++++...+.+....++....+-    +.++.|.+.+++++++++
T Consensus       171 em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~  240 (251)
T PF09753_consen  171 EMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIV  240 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            344455555555554456666667777788888877777777666533    345554444444433333

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses

Probab=85.69  E-value=0.62  Score=40.72  Aligned_cols=28  Identities=4%  Similarity=0.226  Sum_probs=14.3

Q ss_pred             HHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328         109 VDDITERMDHTNVSIQRETNQVTSILTQ  136 (159)
Q Consensus       109 Ld~l~~~vd~t~~~l~~~~~~l~~~~~~  136 (159)
                      |+.++..++++.+.|++.++-|..+...
T Consensus       440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~  467 (490)
T PF00523_consen  440 LGQVNNSLNNAKDLLDKSNQILDSVNPG  467 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445555555555566665555554443

This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....

>PHA03386 P10 fibrous body protein; Provisional

Probab=85.58  E-value=6.3  Score=26.69  Aligned_cols=55  Identities=13%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328          66 VREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQ  124 (159)
Q Consensus        66 ~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~  124 (159)
                      ++.+-..-+++-|..++.|...|..++.-    .+-|+.|...|+.++..|...++-|.
T Consensus         6 ILl~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn   60 (94)
T PHA03386          6 VLTQILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT   60 (94)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence            44445567788899999999999999866    55599999999999999998877654

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=82.08  E-value=26  Score=32.58  Aligned_cols=17  Identities=18%  Similarity=0.087  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy7328          90 RQKNIALTISNEVDVQN  106 (159)
Q Consensus        90 ~lk~ia~~i~~El~~Q~  106 (159)
                      .++..-..++.++..+.
T Consensus       361 ~ik~~l~~~~~~i~~~a  377 (806)
T PF05478_consen  361 PIKRDLDSIGKQIRSQA  377 (806)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444433

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length

Probab=81.24  E-value=1.6  Score=22.02  Aligned_cols=14  Identities=43%  Similarity=0.859  Sum_probs=8.7

Q ss_pred             HHHHHHHHHHHHHH
Q psy7328         143 WVVIIVLFIANVLV  156 (159)
Q Consensus       143 ~~iI~~L~v~iv~l  156 (159)
                      +.+|++||+++|++
T Consensus         6 FalivVLFILLiIv   19 (24)
T PF09680_consen    6 FALIVVLFILLIIV   19 (24)
T ss_pred             chhHHHHHHHHHHh
Confidence            44566677766665

Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.

>PHA03240 envelope glycoprotein M; Provisional

Probab=80.03  E-value=1.7  Score=34.07  Aligned_cols=18  Identities=17%  Similarity=0.464  Sum_probs=11.4

Q ss_pred             hHHHHHHHHHHHHHHHHh
Q psy7328         141 GYWVVIIVLFIANVLVAT  158 (159)
Q Consensus       141 ~~~~iI~~L~v~iv~l~~  158 (159)
                      -.|++|++++++||++++
T Consensus       213 ~~WIiilIIiIiIIIL~c  230 (258)
T PHA03240        213 IAWIFIAIIIIIVIILFF  230 (258)
T ss_pred             HhHHHHHHHHHHHHHHHH
Confidence            367777666666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
1gl2_D	65	Crystal Structure Of An Endosomal Snare Core Comple		4e-07
3zur_A	960	Crystal Structure Of An Engineered Botulinum Neurot		2e-04

>pdb|1GL2|D Chain D, Crystal Structure Of An Endosomal Snare Core Complex Length = 65

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 77  QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVT 131
           QD GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  ++ E  +VT
Sbjct: 7   QDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61

>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A Length = 960

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137
           D+ LE +S +I   +++AL + NE+D QN  +D I E+ D     I     + T +L   
Sbjct: 453 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 512
Query: 138 A 138
           A
Sbjct: 513 A 513

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	9e-14
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	3e-13
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	4e-11
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	1e-10
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	6e-07
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	8e-07

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 61.3 bits (149), Expect = 9e-14
 Identities = 24/62 (38%), Positives = 41/62 (66%)

Query: 72  MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVT 131
             +  QD GL+ALS +ISRQK +   I NE+D QN+++DD+   +++T+  ++ E  +VT
Sbjct: 2   SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61

Query: 132 SI 133
            +
Sbjct: 62  LV 63

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 60.6 bits (147), Expect = 3e-13
 Identities = 14/68 (20%), Positives = 30/68 (44%)

Query: 67  REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRE 126
                 M   QD+ LE +S  I   KN++  I  E++ Q  +++D +  ++ T   +   
Sbjct: 7   MTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNV 66

Query: 127 TNQVTSIL 134
             ++  + 
Sbjct: 67  MKKLAKVS 74

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 55.2 bits (133), Expect = 4e-11
 Identities = 20/68 (29%), Positives = 32/68 (47%)

Query: 67  REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRE 126
           R          D+ LE +S +I   +++AL + NE+D QN  +D I E+ D     I   
Sbjct: 17  RVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEA 76

Query: 127 TNQVTSIL 134
             + T +L
Sbjct: 77  NQRATKML 84

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 53.6 bits (129), Expect = 1e-10
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 65  DVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQ 124
             RE +       D+ LE +S +I   +++AL + NE+D QN  +D I E+ D     I 
Sbjct: 2   SARENEM------DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRID 55

Query: 125 RETNQVTSIL 134
               + T +L
Sbjct: 56  EANQRATKML 65

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 87

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 14/58 (24%), Positives = 29/58 (50%)

Query: 77  QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
            +  ++ +S +I   +N+A+ + NE+  QN  VD I ++ +     I     + T +L
Sbjct: 28  MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Length = 64

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 17/56 (30%), Positives = 33/56 (58%)

Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133
           D+ L+ + +V +R K +ALT   E+D Q   +++I E  D  ++++   TN++  I
Sbjct: 9   DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.82
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.72
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.65
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.64
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.58
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.56
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.48
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	99.01
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	98.84
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	98.76
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	98.71
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	98.65
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	98.65
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	98.26
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	97.77
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	97.68
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	97.62
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	97.3
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	97.05
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	96.88
3b5n_C	70	Protein transport protein SEC9; snare complex, syn	96.63
2nps_C	81	Vesicle transport through interaction with T- snar	96.57
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	96.52
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	96.26
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	94.79
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	90.9

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.82  E-value=3.9e-20  Score=122.66  Aligned_cols=77  Identities=18%  Similarity=0.239  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCch
Q psy7328          65 DVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCG  141 (159)
Q Consensus        65 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~  141 (159)
                      ..++.|++++++||+.|+.|+.+|++||++|.+||+||+.||++||+|+++||+|..+|+.+++++++++++++++|
T Consensus         5 a~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~   81 (82)
T 2nps_D            5 ASMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR   81 (82)
T ss_dssp             -------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999988775

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.72  E-value=1.5e-17  Score=105.50  Aligned_cols=64  Identities=38%  Similarity=0.599  Sum_probs=53.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328          72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT  135 (159)
Q Consensus        72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~  135 (159)
                      ++|++||+.|+.|+.+|++||++|.+||+||+.||++||+++++||++..+|+.++++++++.+
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            5789999999999999999999999999999999999999999999999999999999998764

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.65  E-value=8.3e-16  Score=97.69  Aligned_cols=62  Identities=31%  Similarity=0.498  Sum_probs=59.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~  134 (159)
                      +-.+||+.|+.|+.+|++||++|.+||+||+.||++||+|+++||++..+|+.+++++++++
T Consensus         4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll   65 (66)
T 1n7s_D            4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence            34689999999999999999999999999999999999999999999999999999999875

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.64  E-value=1.2e-15  Score=101.91  Aligned_cols=65  Identities=29%  Similarity=0.467  Sum_probs=61.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328          72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ  136 (159)
Q Consensus        72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~  136 (159)
                      .+.++||+.|+.|+.+|++||++|.+||+||+.||++||+|+++||++..+|..+++++++++++
T Consensus        22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D           22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            35579999999999999999999999999999999999999999999999999999999998875

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.58  E-value=3.7e-15  Score=99.51  Aligned_cols=64  Identities=22%  Similarity=0.410  Sum_probs=59.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ  136 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~  136 (159)
                      ...+||+.|+.|+.+|++||++|.+||.||+.||++||+|+++||++..+|..+++++++++++
T Consensus        24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k   87 (87)
T 1l4a_D           24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN   87 (87)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3468999999999999999999999999999999999999999999999999999999998763

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.8e-14  Score=90.74  Aligned_cols=60  Identities=28%  Similarity=0.473  Sum_probs=57.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328          74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI  133 (159)
Q Consensus        74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~  133 (159)
                      -+++|+.|+.|+..+++||++|.+||+||+.||++||+|+.++|++..++..+++|++++
T Consensus         5 E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i   64 (64)
T 3b5n_D            5 ELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI   64 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            468999999999999999999999999999999999999999999999999999999864

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.48  E-value=6.7e-13  Score=92.12  Aligned_cols=67  Identities=13%  Similarity=0.264  Sum_probs=62.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328          72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA  138 (159)
Q Consensus        72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~  138 (159)
                      ..+++.++.+..|..++..|++++.+++..|.+|++++|+++++++.|...+..+++.++++.++.+
T Consensus        14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk   80 (109)
T 3hd7_B           14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS   80 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999999999999999999999999999999999999977654

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=99.01  E-value=4.5e-09  Score=68.31  Aligned_cols=68  Identities=13%  Similarity=0.270  Sum_probs=61.4

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCc
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATC  140 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~  140 (159)
                      .+++..+.+..|..++..|++++.+++.-|.+|+++||+|+.+|+.|...+..+...+.+..++.++.
T Consensus         4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~   71 (77)
T 1jth_B            4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA   71 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46678889999999999999999999999999999999999999999999999999999999876543

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=98.84  E-value=2.6e-08  Score=63.69  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=60.9

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHH
Q psy7328          76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYW  143 (159)
Q Consensus        76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~  143 (159)
                      +..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...|.+..++.++.+.|
T Consensus         3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~   70 (71)
T 2nps_B            3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK   70 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            45778999999999999999999999999999999999999999999999999999999876554333

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=98.76  E-value=1.4e-07  Score=59.90  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=61.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD  137 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~  137 (159)
                      .+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...+++..++.
T Consensus         4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q   68 (69)
T 3b5n_B            4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA   68 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46778899999999999999999999999999999999999999999999999999999988754

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=98.71  E-value=2.1e-07  Score=61.12  Aligned_cols=68  Identities=13%  Similarity=0.261  Sum_probs=63.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328          72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT  139 (159)
Q Consensus        72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~  139 (159)
                      ..+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...|.+..++.++
T Consensus        14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~   81 (83)
T 1sfc_B           14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            35778889999999999999999999999999999999999999999999999999999999887654

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=98.65  E-value=3.3e-07  Score=57.98  Aligned_cols=62  Identities=15%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~  134 (159)
                      .+.+..+.+..|..++..|++++.+++.-|.+|+++||+|+.+|+.|...+..+...+++..
T Consensus         6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~   67 (68)
T 1n7s_B            6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56678889999999999999999999999999999999999999999999999999998864

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=98.65  E-value=1.7e-07  Score=58.81  Aligned_cols=62  Identities=16%  Similarity=0.295  Sum_probs=56.3

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~  134 (159)
                      .+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...|++..
T Consensus         3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~   64 (65)
T 1gl2_B            3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA   64 (65)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            35567788999999999999999999999999999999999999999999999999998754

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=98.26  E-value=6.9e-07  Score=70.61  Aligned_cols=77  Identities=13%  Similarity=0.215  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH
Q psy7328          69 QQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV  145 (159)
Q Consensus        69 ~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i  145 (159)
                      ..-..+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..|...|.++.++.++.+.|.|
T Consensus       190 ~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~  266 (267)
T 1dn1_B          190 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI  266 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            34456778889999999999999999999999999999999999999999999999999999999987765444433

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=97.77  E-value=0.00073  Score=46.27  Aligned_cols=65  Identities=6%  Similarity=0.097  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328          69 QQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI  133 (159)
Q Consensus        69 ~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~  133 (159)
                      ...+.+.+.+..+..|+.....+..+-..=|+-++.=..-++...++++.+...|+.|.+.=++.
T Consensus        18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~   82 (109)
T 3hd7_B           18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA   82 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34445678888899999999999988888888898888889999999999999999998664443

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=97.68  E-value=2.9e-05  Score=61.45  Aligned_cols=67  Identities=15%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328          73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT  139 (159)
Q Consensus        73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~  139 (159)
                      .+.+..+.+..|..+|..|++|+.+++.-|.+|+++||+|+.+|+.|...+..|...|.+..++.++
T Consensus       211 ~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~  277 (279)
T 2xhe_B          211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQES  277 (279)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence            4567788999999999999999999999999999999999999999999999999999998876543

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=97.62  E-value=0.002  Score=41.62  Aligned_cols=70  Identities=19%  Similarity=0.315  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328          65 DVREQQQMMIAAQDQGLEAL---SKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        65 ~~~q~q~~~~~eqD~~Ld~l---~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~  134 (159)
                      ++.+.+++.....++.++.+   ...+....++|..+-.+|..|.+.|++++..++.+...|+++.+.|+.+.
T Consensus         6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C            6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            34444555555555555554   45555778899999999999999999999999999999999999888764

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=97.30  E-value=0.0034  Score=41.53  Aligned_cols=37  Identities=11%  Similarity=0.188  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHh
Q psy7328          82 EALSKVISRQKNIALTISNEVDVQNDLVDDITERMDH  118 (159)
Q Consensus        82 d~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~  118 (159)
                      ..+..-+...+.+-..=-+.+-+-++-||.+.+..+.
T Consensus         8 ~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~   44 (91)
T 3hd7_A            8 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA   44 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            3333334444433333333334444555555554443

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=97.05  E-value=0.004  Score=37.21  Aligned_cols=49  Identities=14%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328          84 LSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS  132 (159)
Q Consensus        84 l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~  132 (159)
                      ....+....++|..+-.+|..|.+.|++++..++.++..++.+.+.|..
T Consensus         5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~   53 (54)
T 1nhl_A            5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence            3456677888999999999999999999999999999999999987753

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=96.88  E-value=0.0049  Score=40.14  Aligned_cols=65  Identities=20%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328          69 QQQMMIAAQDQGLEALSKV---ISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI  133 (159)
Q Consensus        69 ~q~~~~~eqD~~Ld~l~~~---v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~  133 (159)
                      .++++..-+++.++.....   +..-+..|...-.+|..|++.|++++.++|.....++.+-+.|+.+
T Consensus        14 l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L   81 (83)
T 1l4a_C           14 IQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444556556555544   4556679999999999999999999999999999999888766543

>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=96.63  E-value=0.032  Score=35.02  Aligned_cols=59  Identities=7%  Similarity=0.178  Sum_probs=47.7

Q ss_pred             HHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328          77 QDQGLEALSKV---ISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT  135 (159)
Q Consensus        77 qD~~Ld~l~~~---v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~  135 (159)
                      .++.++.-...   +..-...|...-.+|..|++.|++++.++|.+...++.+.++++.+-+
T Consensus         7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~   68 (70)
T 3b5n_C            7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK   68 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34445444444   445566899999999999999999999999999999999999988654

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=96.57  E-value=0.06  Score=34.64  Aligned_cols=66  Identities=14%  Similarity=0.246  Sum_probs=59.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328          72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD  137 (159)
Q Consensus        72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~  137 (159)
                      +.++.-.+.|..-...+....++|..|-.+|..|.+.|.+..+.++.++..+.++.+.|+.+.+..
T Consensus        12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~   77 (81)
T 2nps_C           12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI   77 (81)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence            344666778888899999999999999999999999999999999999999999999999988764

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=96.52  E-value=0.015  Score=36.01  Aligned_cols=59  Identities=19%  Similarity=0.304  Sum_probs=51.4

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328          76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL  134 (159)
Q Consensus        76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~  134 (159)
                      +-.+.|..-...+....++|..|-.+|..|.+.|.+....++.++..|.++.+.|+.+.
T Consensus         6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~   64 (65)
T 1gl2_C            6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence            34566777788888999999999999999999999999999999999999998887653

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=96.26  E-value=0.00079  Score=51.88  Aligned_cols=75  Identities=12%  Similarity=0.210  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH
Q psy7328          71 QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV  145 (159)
Q Consensus        71 ~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i  145 (159)
                      ...+.+..+.+..|...+..+.+++..|..-+.+|...+++|+.+|+.+...+..+...+.+...+.+..+.|-|
T Consensus       204 ~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~  278 (279)
T 3c98_B          204 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI  278 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            345667788999999999999999999999999999999999999999999999999999998877665444433

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=94.79  E-value=0.0025  Score=44.25  Aligned_cols=32  Identities=9%  Similarity=0.246  Sum_probs=16.4

Q ss_pred             HHHHhhhhHHHHHHhHHhh---hHHHHHHHHHHHH
Q psy7328         101 EVDVQNDLVDDITERMDHT---NVSIQRETNQVTS  132 (159)
Q Consensus       101 El~~Q~~~Ld~l~~~vd~t---~~~l~~~~~~l~~  132 (159)
                      .+-+-++-||.|.+..+.-   ....++..+++++
T Consensus        55 kvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r   89 (119)
T 2kog_A           55 KVLERDQKLSELDDRADALQAGASQFETSAAKLKR   89 (119)
T ss_dssp             HHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444566666666555543   3444444444444

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=90.90  E-value=2.2  Score=27.69  Aligned_cols=27  Identities=7%  Similarity=0.160  Sum_probs=14.6

Q ss_pred             HHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328         109 VDDITERMDHTNVSIQRETNQVTSILT  135 (159)
Q Consensus       109 Ld~l~~~vd~t~~~l~~~~~~l~~~~~  135 (159)
                      |.+-.+++.......++..+++++-+-
T Consensus        38 L~~kt~~L~~~s~~F~~~A~~l~rkmw   64 (91)
T 3hd7_A           38 LDDRADALQAGASQFETSAAKLKRKYW   64 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445555556666666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00