Psyllid ID: psy7356

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080---

MNESNEQWKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFSSSKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSLDTDRR

cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHccccccccccHHHHccccccHHHHHHHHHHHccccccccccccccccccHHHHccccccEEEEEEcccccccccccHHHHHHHHcccccEEEEEEccEEEEccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccc

cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccHHHHcccEEEEHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHccccEEEEEEEEEEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEEEEcccccEEccccccEEccHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccHHHHHHHHHHHHccccEEcccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccc

MNESNEQWKVTILELVSRGNAIIAELLRLkdhipsifqqtdvnkqYSDLIIDfsyfsqnetvdnkiegSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFssskkgngypenvfsripineNLVNMILGKlrtddiyhsivayplpqhrstaLANQASMLFVCLYFDtsvlhnntaNMREVvdkffpdnwIVSIYMGITVQLIDAWEPYRAAKLALSnsletsnvkqystfhTDRIIKLTSQTNQllkdgalteenVLDNTNKILNLARECNVTIRWLVLHtssnhetisgvaaskksKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFsgakplpkvhknqQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVkefhglssnaQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLStsleipllrinqaeseDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQtnvmlevptrldkdklkdyAQLDTRFEIAHLTHSISVFTQGILRMKSTLVgivcidpkqllhNGIKKQLAETILTELNkgltfntksktnkTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSeidslsstsgctfVGRLADELvsmtdpkqsmyvENTTAWYNVKTQKEIFNMKIFSLIIKAIGIsglvgldnvlgFRIVKNIQSVFSQLfnysndkpcQDILAQMSkelspntnpisnptklyPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYyskegmslptdnqELMTSICAYLKwigqdnpyhkiyvtsrnipyfPLFLFLYSLSVLSKvtysssqdlfltkkgyeychtDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHvassldtdrr

MNESNEQWKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFSsskkgngypenVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALsnsletsnvkqYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTssnhetisgvaaskkskQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTElnkgltfntksktnktdlMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSseidslsstsgCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDILAQMSKElspntnpisnpTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKShvassldtdrr

MNESNEQWKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFSSSKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSefelkikellkalledkQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSlliklralflklSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSliqigqlqilrqllrHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIpyfplflflyslsvlsKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSLDTDRR

*******WKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKI******QELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFSSSKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETI***********IKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDIL******************KLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHV*********

*****EQWKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFSSSKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTD****LTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVA**KKSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLE***********QKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTK*****TDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLR***************ELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHV**S******

*NESNEQWKVTILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQNFDEVCQLFSSSKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGCTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYIKSHVASSL*****

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiii

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1083	2.2.26 [Sep-21-2011]
Q7ZVM1		1159	WASH complex subunit stru	yes	N/A	0.972	0.908	0.464	0.0
Q12768		1159	WASH complex subunit stru	yes	N/A	0.972	0.908	0.457	0.0
Q5R5P0		1159	WASH complex subunit stru	yes	N/A	0.972	0.908	0.457	0.0
Q8C2E7		1159	WASH complex subunit stru	yes	N/A	0.970	0.906	0.455	0.0
Q6DIP9		1159	WASH complex subunit stru	yes	N/A	0.975	0.911	0.452	0.0
Q54IR8		1164	WASH complex subunit stru	yes	N/A	0.963	0.896	0.385	0.0
Q9VUY8		1191	WASH complex subunit stru	yes	N/A	0.965	0.878	0.381	0.0

>sp\|Q7ZVM1\|STRUM_DANRE WASH complex subunit strumpellin OS=Danio rerio GN=zgc:55908 PE=2 SV=1	Back alignment and function desciption

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1101 (46%), Positives = 752/1101 (68%), Gaps = 48/1101 (4%)

Query: 11   TILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQ--YSDLIIDFSYFSQNETVDNKIEG 68
             IL +VSRGNAIIAELLRL D IP++F+  D   Q  Y D+I DFSYF   E  + K+E 
Sbjct: 14   AILRIVSRGNAIIAELLRLSDFIPAVFRLRDKTDQQKYGDIICDFSYFKGPEYYEGKLEA 73

Query: 69   SQQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDE 128
              +LQ+LDE+ R+  +EIL RFY+ FE+++K+ ++L + +++L   VYIQ+++E+V L+E
Sbjct: 74   KPELQDLDEEFRENNIEILTRFYLAFESVHKYVVDLIRCLDDLNEGVYIQQTLETVLLNE 133

Query: 129  EGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQ---NFDEVCQLFSS- 184
            +G QL+CEALYLYGVMLLV +  + G +RE++LVSYYRYS  +S    N D++C+L  S 
Sbjct: 134  DGKQLLCEALYLYGVMLLVIDQKMEGEVRERMLVSYYRYSAARSSADSNLDDICKLLRST 193

Query: 185  -------SKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALAN 237
                   +K+   YPE+ F R+PI+   ++M++G+LR+DDIY+ + AYPLP+HRSTALA 
Sbjct: 194  GYSSHPGAKRPTNYPESYFQRVPISSTFISMVIGRLRSDDIYNQVSAYPLPEHRSTALAT 253

Query: 238  QASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLA 297
            QA+ML+VCLYF  S+LH   A MRE+VDK+FPDNW++SIYMGITV L++AWEPY+AAK+A
Sbjct: 254  QAAMLYVCLYFTPSILHTQQAKMREIVDKYFPDNWVISIYMGITVNLVEAWEPYKAAKIA 313

Query: 298  LSNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTI 357
            L+ +L+T+N+++ +  +   +  L  Q  QLLK+G L EE +LDN  K+LN  R+CNV I
Sbjct: 314  LNYTLDTANIREQAGRYAASVETLRPQVQQLLKEGFLREEIILDNIPKLLNCLRDCNVAI 373

Query: 358  RWLVLHTSSNHETISGVAASKKSKQIKDIVSNN--INMSDVFQLILNTSEFELKIKELLK 415
            RWL+LHT+ +    +    +K+ +QIKD V N+   N   +FQL+L+T++FE  +KE+ K
Sbjct: 374  RWLMLHTAES----AYDPNNKRLRQIKDQVINDSKYNPKILFQLLLDTAQFEFILKEMFK 429

Query: 416  ALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFS 475
             +L +KQ KW S K+E +ER+  L E+FSG KPL +V KN+ L+ WF EI+  +ESLN+ 
Sbjct: 430  QMLAEKQLKWESYKKEGSERMMELAEVFSGVKPLTRVEKNENLQAWFREISKQIESLNYE 489

Query: 476  DEMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQ 535
            D   + +K VQ IQAL  V+EFH L SN QV Q++ ++ K+L+ M+R++N+K++V+I +Q
Sbjct: 490  DSTAAGRKTVQLIQALVEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINIKEEVLITMQ 549

Query: 536  IIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLI 595
            I+ DLSYAW++ID FT +MQ++I+  PS++ KLRA  LKL+++L++PLLRINQ  S DL+
Sbjct: 550  IVGDLSYAWQIIDSFTAIMQESIRANPSMVTKLRATLLKLASALDLPLLRINQVNSPDLL 609

Query: 596  SVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDT 655
            SVSQ+YS ELV Y++ VLQIIP++MFT +A I  LQ + ++EVPTRLDKDKLKDY+QL  
Sbjct: 610  SVSQFYSGELVAYVRKVLQIIPESMFTSLAKIIKLQIHDIMEVPTRLDKDKLKDYSQLSA 669

Query: 656  RFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFN 715
            R+E+A LTH+ISVFT+GIL MK+TLVGI+ +DPKQLL +GI+K+L + +   L+KGL FN
Sbjct: 670  RYEVAKLTHAISVFTEGILMMKTTLVGIIQVDPKQLLEDGIRKELVKRVAYALHKGLIFN 729

Query: 716  TKSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEID 775
             K+K   ++LM KL ++A  MDG  RSFEYIQDYV IYGLK+W E ++++I   V  E +
Sbjct: 730  PKAKP--SELMPKLKEMAATMDGFYRSFEYIQDYVSIYGLKIWQEEVSRIINYNVEQECN 787

Query: 776  SLSSTS-----------------------GCTFVGRLADELVSMTDPKQSMYVENTTAWY 812
            S   T                          TF+GRL  E++ +TDPK + Y++    WY
Sbjct: 788  SFLRTKIQDWQSVHQSTHIPIPKYPSVDESATFIGRLCREILRITDPKVTCYIDQLNTWY 847

Query: 813  NVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQL-FNYSNDKPCQD 871
            +++T +E+ N ++FS I   +G  GL GLD +L F IVK +Q+  + L  +   DK   D
Sbjct: 848  DLRTHQEVTNNRLFSEIQDTLGTFGLNGLDRLLCFMIVKELQNFLTVLQKSILKDKAVVD 907

Query: 872  ILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSS 931
            +   +   ++P    ++N +K+Y    +K  K      +S++++GQ+QILRQ + +EL+ 
Sbjct: 908  VFKALLTAVNPVKGIVANASKVYTNAAAKTQKIWSPYLESIMKVGQMQILRQQIANELNY 967

Query: 932  CAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYH 991
              +F+SK+L   L+ L+KSLL+D+  +Y    +  P ++  L+  I AYL+  G  NP +
Sbjct: 968  SCKFDSKHLAAALDNLNKSLLSDIEAHYQDPSLPYPKEDNTLLYEITAYLEAAGIHNPLN 1027

Query: 992  KIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLF 1051
            KIY+T++ +PYFP+  FL+ ++ L K+ Y+ SQ +   K        D   +++GL TL 
Sbjct: 1028 KIYITTKRLPYFPIVNFLFLIAQLPKLQYNKSQGMACRKPA---DALDWAPLVLGLLTLL 1084

Query: 1052 HQFHKDIGEQYLVYLCQYIKS 1072
             QFH    EQ+L  + Q+I+S
Sbjct: 1085 KQFHSRYTEQFLALIGQFIRS 1105

Danio rerio (taxid: 7955)

>sp\|Q12768\|STRUM_HUMAN WASH complex subunit strumpellin OS=Homo sapiens GN=KIAA0196 PE=1 SV=1	Back alignment and function description

>sp\|Q5R5P0\|STRUM_PONAB WASH complex subunit strumpellin OS=Pongo abelii PE=2 SV=1	Back alignment and function description

>sp\|Q8C2E7\|STRUM_MOUSE WASH complex subunit strumpellin OS=Mus musculus GN=Kiaa0196 PE=2 SV=2	Back alignment and function description

>sp\|Q6DIP9\|STRUM_XENTR WASH complex subunit strumpellin OS=Xenopus tropicalis PE=2 SV=1	Back alignment and function description

>sp\|Q54IR8\|STRUM_DICDI WASH complex subunit strumpellin homolog OS=Dictyostelium discoideum GN=DDB_G0288569 PE=1 SV=1	Back alignment and function description

>sp\|Q9VUY8\|STRUM_DROME WASH complex subunit strumpellin homolog OS=Drosophila melanogaster GN=CG12272 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1083
242021716		1164	conserved hypothetical protein [Pediculu	0.975	0.908	0.499	0.0
427797163		1168	Hypothetical protein, partial [Rhipiceph	0.975	0.904	0.480	0.0
443724111		1163	hypothetical protein CAPTEDRAFT_155968 [	0.980	0.913	0.463	0.0
348512368		1159	PREDICTED: WASH complex subunit strumpel	0.972	0.908	0.462	0.0
291231333		1161	PREDICTED: hypothetical protein [Saccogl	0.973	0.907	0.461	0.0
395817932		1159	PREDICTED: WASH complex subunit strumpel	0.972	0.908	0.462	0.0
41055722		1159	WASH complex subunit strumpellin [Danio	0.972	0.908	0.464	0.0
327269324		1158	PREDICTED: WASH complex subunit strumpel	0.971	0.908	0.460	0.0
449278646		1164	Strumpellin, partial [Columba livia]	0.972	0.904	0.460	0.0
224046720		1159	PREDICTED: WASH complex subunit strumpel	0.972	0.908	0.461	0.0

>gi\|242021716\|ref\|XP_002431289.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212516557\|gb\|EEB18551.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score = 1071 bits (2771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1104 (49%), Positives = 773/1104 (70%), Gaps = 47/1104 (4%)

Query: 12   ILELVSRGNAIIAELLRLKDHIPSIFQ-QTDVNKQ-YSDLIIDFSYFSQNETVDNKIEGS 69
            IL LVSRGNAIIAE+LRLKD IP I++  +  ++Q Y DLI+DFSYF   E  + K+E  
Sbjct: 15   ILRLVSRGNAIIAEILRLKDFIPQIYRLDSKADQQKYGDLILDFSYFKNLEGFEQKVEND 74

Query: 70   QQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEE 129
             +LQ+LDE+IR+  LEI+ RFY+ FE+I+K+ I+LN+++E+L+  +YIQ+++ESV   +E
Sbjct: 75   PKLQDLDEEIRENNLEIITRFYLAFESIHKYVIDLNRFLEDLDEGIYIQQTLESVLESDE 134

Query: 130  GCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKS---QNFDEVCQL----- 181
            G QLMCE+LYLYGVMLL+ +L++ G+IRE+LLVSYYRYS  KS    N D+V +L     
Sbjct: 135  GKQLMCESLYLYGVMLLLVDLHIDGSIRERLLVSYYRYSAQKSNSESNIDDVFKLLCSTG 194

Query: 182  FSSS---KKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQ 238
            FSSS   K+ + YPE+ F RIPINE  ++M+LG+LR+DDIYH +  Y LP+HRSTALANQ
Sbjct: 195  FSSSGGNKRPSQYPEDYFRRIPINETYIDMVLGRLRSDDIYHQLKVYALPEHRSTALANQ 254

Query: 239  ASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLAL 298
            A+ML +CL+F   +L+N TA MRE+VDK+FPDNW++SIYMG  + LID W+ Y+AAK AL
Sbjct: 255  AAMLVICLFFSPKILNNQTAVMREIVDKYFPDNWVLSIYMGEVINLIDVWDSYKAAKSAL 314

Query: 299  SNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIR 358
            SNSLETSN+  Y+  H +++ KLT+   + +++GALTE+ +LDN+ +++NL RE NVT+R
Sbjct: 315  SNSLETSNLSNYANKHKNKLQKLTACIEKFVEEGALTEDQLLDNSQRVMNLIREANVTLR 374

Query: 359  WLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMS--DVFQLILNTSEFELKIKELLKA 416
            WL+LHT+       G   SKK KQI+D + + I  S  D+FQL+LN ++FELK+K++ KA
Sbjct: 375  WLMLHTAPLFPVSEG---SKKCKQIRDYIISEIKFSPLDMFQLLLNAAQFELKVKDMFKA 431

Query: 417  LLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSD 476
            LL +KQ+KW S K+EC +R+N L ++FSG KPL ++ KN++L  WF +I   ++SLN  +
Sbjct: 432  LLLEKQDKWESYKKECVDRMNELSDVFSGTKPLTRIEKNEKLHAWFQDIGKQIDSLNHEE 491

Query: 477  EMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQI 536
               S +KIVQ I+AL+ V+EFH L++  QV Q++ E+   L+ M+RS+N+K++V IHLQ+
Sbjct: 492  TNASGRKIVQLIRALEEVQEFHDLANQLQVCQFLLETRNILHSMLRSINIKEEVPIHLQV 551

Query: 537  IADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLIS 596
            IAD+SYAW ++D +T  MQ  IK +PSL++KLRA FLK++++LEIPL+RINQA S DL+S
Sbjct: 552  IADMSYAWLIMDSYTKYMQKGIKEDPSLVVKLRATFLKMASALEIPLMRINQARSSDLVS 611

Query: 597  VSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTR 656
            VSQYYSNELV Y++ VL IIP+TMF +MA I ++QT  + EVPTRLDKD+LK+YAQLD R
Sbjct: 612  VSQYYSNELVAYVRKVLHIIPETMFQIMAKIAHIQTYEIKEVPTRLDKDQLKEYAQLDHR 671

Query: 657  FEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNT 716
            F++A LTH +SV T GI  MKSTLVG++ IDP QLL +GI+K+L + + T LN GL+FN+
Sbjct: 672  FQVAKLTHDVSVLTDGITMMKSTLVGVIRIDPIQLLEDGIRKELVKHMATALNNGLSFNS 731

Query: 717  KSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSE--- 773
            KSKT  ++L+ KL  L  VMDGHK+SFEYIQDY+ IYGLK+W E L +VI   V  E   
Sbjct: 732  KSKT--SELIQKLETLGDVMDGHKKSFEYIQDYIHIYGLKIWQEELTRVIGYNVEQECNN 789

Query: 774  -------------------IDSLSS--TSGCTFVGRLADELVSMTDPKQSMYVENTTAWY 812
                               I   SS  +S   F+GRLA EL+ +TDPK ++Y+E+T  WY
Sbjct: 790  FLRNKISDWQSRYQSKTIPIPKFSSQDSSSVNFMGRLARELIKITDPKCTIYLESTVTWY 849

Query: 813  NVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFN-YSNDKPCQD 871
            ++KT+ E+ N K FS I K++G  G+ GLD +L F I   +Q+   QL      DK    
Sbjct: 850  DLKTKTEVVNTKSFSKITKSVGTQGVTGLDCLLSFMISSELQNFLGQLEKVVVKDKSVLQ 909

Query: 872  ILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMG-VNDSLIQIGQLQILRQLLRHELS 930
            IL   SK      + I N +K Y  Y SK++K L   + D +++IGQ+Q+LR  + +ELS
Sbjct: 910  ILEDASKNFKNKNDVIKNGSKYYLNYTSKISKTLTQLLLDWILKIGQMQLLRIHIAYELS 969

Query: 931  SCAQFESKNLHLCLETLDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPY 990
            +  +FES NL   +E  +++LL+D+R ++    M  P+++  L  +I + L  +G  +P 
Sbjct: 970  TFCKFESPNLSSVIEAFNRALLSDVRKHFRDPSMPYPSEDSLLFPNISSQLDAVGLSDPT 1029

Query: 991  HKIYVTSRNIPYFPLFLFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTL 1050
             KIYVT++NI +FPL +FL+SLS L K+ YS +    L+KK       D +   +GL TL
Sbjct: 1030 MKIYVTTKNINHFPLLIFLFSLSQLHKLQYSKTVGTLLSKKP-TTDPLDGISFAMGLQTL 1088

Query: 1051 FHQFHKDIGEQYLVYLCQYIKSHV 1074
            F QFH D  +++L Y  QY+KS V
Sbjct: 1089 FRQFHSDAKQEFLSYFGQYLKSVV 1112

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|427797163\|gb\|JAA64033.1\| Hypothetical protein, partial [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|443724111\|gb\|ELU12274.1\| hypothetical protein CAPTEDRAFT_155968 [Capitella teleta]	Back alignment and taxonomy information

>gi\|348512368\|ref\|XP_003443715.1\| PREDICTED: WASH complex subunit strumpellin-like [Oreochromis niloticus]	Back alignment and taxonomy information

>gi\|291231333\|ref\|XP_002735620.1\| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|395817932\|ref\|XP_003782395.1\| PREDICTED: WASH complex subunit strumpellin [Otolemur garnettii]	Back alignment and taxonomy information

>gi\|41055722\|ref\|NP_956477.1\| WASH complex subunit strumpellin [Danio rerio] gi\|82188666\|sp\|Q7ZVM1.1\|STRUM_DANRE RecName: Full=WASH complex subunit strumpellin gi\|28277747\|gb\|AAH45490.1\| Zgc:55908 [Danio rerio]	Back alignment and taxonomy information

>gi\|327269324\|ref\|XP_003219444.1\| PREDICTED: WASH complex subunit strumpellin-like [Anolis carolinensis]	Back alignment and taxonomy information

>gi\|449278646\|gb\|EMC86447.1\| Strumpellin, partial [Columba livia]	Back alignment and taxonomy information

>gi\|224046720\|ref\|XP_002187324.1\| PREDICTED: WASH complex subunit strumpellin [Taeniopygia guttata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1083
ZFIN\|ZDB-GENE-040426-838		1159	strumpellin "strumpellin" [Dan	0.704	0.658	0.505	7.9e-249
UNIPROTKB\|Q12768		1159	KIAA0196 "WASH complex subunit	0.704	0.658	0.497	5e-247
UNIPROTKB\|Q6DIP9		1159	Q6DIP9 "WASH complex subunit s	0.704	0.658	0.493	8.1e-247
UNIPROTKB\|F1NQZ6		1166	KIAA0196 "Uncharacterized prot	0.704	0.654	0.496	1e-246
UNIPROTKB\|Q5R5P0		1159	Q5R5P0 "WASH complex subunit s	0.704	0.658	0.496	2.1e-246
UNIPROTKB\|F1PW21		1159	KIAA0196 "Uncharacterized prot	0.704	0.658	0.497	7.2e-246
MGI\|MGI:2146110		1159	E430025E21Rik "RIKEN cDNA E430	0.704	0.658	0.496	1.5e-245
UNIPROTKB\|F1MKJ5		1164	KIAA0196 "Uncharacterized prot	0.704	0.655	0.496	1.5e-243
UNIPROTKB\|E7EQI7		1011	KIAA0196 "WASH complex subunit	0.582	0.624	0.496	1.2e-208
DICTYBASE\|DDB_G0288569		1164	DDB_G0288569 "WASH complex sub	0.691	0.643	0.419	1.2e-199

ZFIN\|ZDB-GENE-040426-838 strumpellin "strumpellin" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 2038 (722.5 bits), Expect = 7.9e-249, Sum P(2) = 7.9e-249
 Identities = 396/784 (50%), Positives = 561/784 (71%)

Query:    12 ILELVSRGNAIIAELLRLKDHIPSIFQQTDVNKQ--YSDLIIDFSYFSQNETVDNKIEGS 69
             IL +VSRGNAIIAELLRL D IP++F+  D   Q  Y D+I DFSYF   E  + K+E  
Sbjct:    15 ILRIVSRGNAIIAELLRLSDFIPAVFRLRDKTDQQKYGDIICDFSYFKGPEYYEGKLEAK 74

Query:    70 QQLQELDEKIRDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEE 129
              +LQ+LDE+ R+  +EIL RFY+ FE+++K+ ++L + +++L   VYIQ+++E+V L+E+
Sbjct:    75 PELQDLDEEFRENNIEILTRFYLAFESVHKYVVDLIRCLDDLNEGVYIQQTLETVLLNED 134

Query:   130 GCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKSQ---NFDEVCQL----- 181
             G QL+CEALYLYGVMLLV +  + G +RE++LVSYYRYS  +S    N D++C+L     
Sbjct:   135 GKQLLCEALYLYGVMLLVIDQKMEGEVRERMLVSYYRYSAARSSADSNLDDICKLLRSTG 194

Query:   182 FSS---SKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQ 238
             +SS   +K+   YPE+ F R+PI+   ++M++G+LR+DDIY+ + AYPLP+HRSTALA Q
Sbjct:   195 YSSHPGAKRPTNYPESYFQRVPISSTFISMVIGRLRSDDIYNQVSAYPLPEHRSTALATQ 254

Query:   239 ASMLFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLAL 298
             A+ML+VCLYF  S+LH   A MRE+VDK+FPDNW++SIYMGITV L++AWEPY+AAK+AL
Sbjct:   255 AAMLYVCLYFTPSILHTQQAKMREIVDKYFPDNWVISIYMGITVNLVEAWEPYKAAKIAL 314

Query:   299 SNSLETSNVKQYSTFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIR 358
             + +L+T+N+++ +  +   +  L  Q  QLLK+G L EE +LDN  K+LN  R+CNV IR
Sbjct:   315 NYTLDTANIREQAGRYAASVETLRPQVQQLLKEGFLREEIILDNIPKLLNCLRDCNVAIR 374

Query:   359 WLVLHTSSNHETISGVAASKKSKQIKDIVSNN--INMSDVFQLILNTSXXXXXXXXXXXX 416
             WL+LHT+ +    +    +K+ +QIKD V N+   N   +FQL+L+T+            
Sbjct:   375 WLMLHTAESAYDPN----NKRLRQIKDQVINDSKYNPKILFQLLLDTAQFEFILKEMFKQ 430

Query:   417 XXXXXQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSD 476
                  Q KW S K+E +ER+  L E+FSG KPL +V KN+ L+ WF EI+  +ESLN+ D
Sbjct:   431 MLAEKQLKWESYKKEGSERMMELAEVFSGVKPLTRVEKNENLQAWFREISKQIESLNYED 490

Query:   477 EMGSVQKIVQFIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQI 536
                + +K VQ IQAL  V+EFH L SN QV Q++ ++ K+L+ M+R++N+K++V+I +QI
Sbjct:   491 STAAGRKTVQLIQALVEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINIKEEVLITMQI 550

Query:   537 IADLSYAWKLIDQFTPLMQDAIKNEPSXXXXXXXXXXXXSTSLEIPLLRINQAESEDLIS 596
             + DLSYAW++ID FT +MQ++I+  PS            +++L++PLLRINQ  S DL+S
Sbjct:   551 VGDLSYAWQIIDSFTAIMQESIRANPSMVTKLRATLLKLASALDLPLLRINQVNSPDLLS 610

Query:   597 VSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTR 656
             VSQ+YS ELV Y++ VLQIIP++MFT +A I  LQ + ++EVPTRLDKDKLKDY+QL  R
Sbjct:   611 VSQFYSGELVAYVRKVLQIIPESMFTSLAKIIKLQIHDIMEVPTRLDKDKLKDYSQLSAR 670

Query:   657 FEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNT 716
             +E+A LTH+ISVFT+GIL MK+TLVGI+ +DPKQLL +GI+K+L + +   L+KGL FN 
Sbjct:   671 YEVAKLTHAISVFTEGILMMKTTLVGIIQVDPKQLLEDGIRKELVKRVAYALHKGLIFNP 730

Query:   717 KSKTNKTDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDS 776
             K+K +  +LM KL ++A  MDG  RSFEYIQDYV IYGLK+W E ++++I   V  E +S
Sbjct:   731 KAKPS--ELMPKLKEMAATMDGFYRSFEYIQDYVSIYGLKIWQEEVSRIINYNVEQECNS 788

Query:   777 LSST 780
                T
Sbjct:   789 FLRT 792

GO:0071203 "WASH complex" evidence=IEA;ISS

GO:0003674 "molecular_function" evidence=ND

GO:0060047 "heart contraction" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

UNIPROTKB\|Q12768 KIAA0196 "WASH complex subunit strumpellin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6DIP9 Q6DIP9 "WASH complex subunit strumpellin" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NQZ6 KIAA0196 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R5P0 Q5R5P0 "WASH complex subunit strumpellin" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PW21 KIAA0196 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2146110 E430025E21Rik "RIKEN cDNA E430025E21 gene" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MKJ5 KIAA0196 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E7EQI7 KIAA0196 "WASH complex subunit strumpellin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0288569 DDB_G0288569 "WASH complex subunit strumpelin" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R5P0	STRUM_PONAB	No assigned EC number	0.4570	0.9722	0.9085	yes	N/A
Q7ZVM1	STRUM_DANRE	No assigned EC number	0.4641	0.9722	0.9085	yes	N/A
Q6DIP9	STRUM_XENTR	No assigned EC number	0.4525	0.9759	0.9119	yes	N/A
Q54IR8	STRUM_DICDI	No assigned EC number	0.3853	0.9630	0.8960	yes	N/A
Q9VUY8	STRUM_DROME	No assigned EC number	0.3816	0.9658	0.8782	yes	N/A
Q8C2E7	STRUM_MOUSE	No assigned EC number	0.4551	0.9704	0.9068	yes	N/A
Q12768	STRUM_HUMAN	No assigned EC number	0.4579	0.9722	0.9085	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1083
pfam10266		1077	pfam10266, Strumpellin, Hereditary spastic paraple	0.0

>gnl\|CDD\|220663 pfam10266, Strumpellin, Hereditary spastic paraplegia protein strumpellin	Back alignment and domain information

 Score = 1122 bits (2905), Expect = 0.0
 Identities = 477/1084 (44%), Positives = 720/1084 (66%), Gaps = 40/1084 (3%)

Query: 20   NAIIAELLRLKDHIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKI 79
            ++IIAELLRL +HIP  F+      +Y+ +I+DFSYF   + ++ KIE   +L ELDE+ 
Sbjct: 1    SSIIAELLRLSEHIPRDFRTHPEQSKYAKIILDFSYFKAQDQIEKKIESDPELLELDEEF 60

Query: 80   RDTYLEILVRFYVVFENIYKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALY 139
            R+T++E+L RFY +FE+IYK+  +LN+Y+E LE  VYIQ+++E+V  DE+G QL+CEALY
Sbjct: 61   RETHIELLERFYRLFESIYKYVQDLNRYIEELEEGVYIQQTLETVLQDEDGKQLLCEALY 120

Query: 140  LYGVMLLVTELYVPGAIREKLLVSYYRY-SLNKSQNFDEVCQLFSSSKKGNG-------Y 191
            LYGVMLL+ +  +PG +RE+LLVSYYRY       N DEVC+L  S+  G G       Y
Sbjct: 121  LYGVMLLLMDYKIPGKVRERLLVSYYRYKGSGDISNIDEVCKLCRSTGYGAGSAKRPPNY 180

Query: 192  PENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLYFDTS 251
            PE  F+R+P+ E+ + M++G++R+DDIY+ +  YPLP+HRSTALA QA ML+V L+F   
Sbjct: 181  PEEYFNRVPLPESFITMVIGRIRSDDIYNMLSNYPLPEHRSTALALQAGMLYVLLFFSPQ 240

Query: 252  VLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYS 311
            +L+N  A MRE+VDK F DNW++S YMGITV L  AWEP++AA+ A++N++   NV+   
Sbjct: 241  ILNNQGAIMREIVDKHFADNWVISYYMGITVDLSVAWEPFKAARTAINNTITQENVQYLC 300

Query: 312  TFHTDRIIKLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETI 371
              +   + +L +   ++L++G LTEE VLDN +K+LNL RECNV +RWL+LHTS + E  
Sbjct: 301  QRYRTSMSELLTSVQEVLREGVLTEEYVLDNIHKLLNLIRECNVVLRWLLLHTSRSAEAA 360

Query: 372  SGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEFELKIKELLKALLEDKQNKWNSCKQE 431
            S    ++  KQ++D++    +  ++ QL+LNT++ E  ++ +   LL++K  +W   K+E
Sbjct: 361  S----NESQKQVRDLILYKFSDDELLQLLLNTAQLEFTLRNMFTTLLQEKDERWEESKKE 416

Query: 432  CNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQFIQAL 491
              ER+  L E FSG KPL KV K++ L+KWF+EI+  +E L++ D   + +KI Q IQAL
Sbjct: 417  AVERMQELAEFFSGTKPLSKVKKDENLQKWFAEISKEIEKLDYDDSTAAGRKIQQLIQAL 476

Query: 492  DSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFT 551
            + V+EFH LSSN QV+Q++ E+ + L+ M+R++N+K+ V+I +Q + D SYAW+L+  + 
Sbjct: 477  EEVQEFHQLSSNLQVKQYLQETRQDLHQMIRTINIKESVLITIQTVGDFSYAWELLSSYV 536

Query: 552  PLMQDAIKNEPSLLIKLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQH 611
            PLMQ+ IK++P L++KLRA FLKL++ LE+PLLRINQAES DL SVS+YYS ELV++++ 
Sbjct: 537  PLMQENIKSDPFLVVKLRATFLKLASILELPLLRINQAESPDLSSVSEYYSGELVSFVRK 596

Query: 612  VLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQLDTRFEIAHLTHSISVFTQ 671
            VLQIIP++MF ++A I +LQTNV+ E+PTRL+KD+LK+YAQL+ R ++A LT SISVFT+
Sbjct: 597  VLQIIPESMFEILAQIIDLQTNVLKELPTRLEKDELKEYAQLEERSQLAKLTASISVFTE 656

Query: 672  GILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLMTKLGQ 731
            GIL M++TLVG++ +DPKQLL +GI+K+L + I   L+  L F+ K K+  ++   KL +
Sbjct: 657  GILAMETTLVGVIEVDPKQLLEDGIRKELVKQITKALHSQLIFDNKKKSKASEFDEKLDK 716

Query: 732  LAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGC-------- 783
            L   ++G +RSFEYIQDYV I+GLK+W E  ++++   V  E ++               
Sbjct: 717  LGRRIEGFRRSFEYIQDYVNIHGLKIWQEEFSRIVNYNVEMECNAFLKKKVYEWQSEYQS 776

Query: 784  ----------------TFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFS 827
                             F+GRLA EL+ +TDPK ++Y+++   WY+ KT KE+  ++ FS
Sbjct: 777  ESIPIPKFPPLDGESVNFIGRLARELLRITDPKTTVYLDSYGGWYDRKTHKEVLGIRTFS 836

Query: 828  LIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQL-FNYSNDKPCQDILAQMSKELSPNTNP 886
             I +A+G +GL GLD +L F + K +Q   S L      +K  +  L  +  EL P +  
Sbjct: 837  RICEAVGPAGLTGLDRLLSFMLAKELQQFLSTLQEKLELEKRWRGALTNLQNELRPTSAF 896

Query: 887  ISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLET 946
              N  K+Y Q   +++     + D L QIGQ+Q+LR+ + +EL+   + +S +L   LET
Sbjct: 897  PENSLKIYEQLTKRISPASAELLDWLAQIGQIQLLRRQIANELNLSCKIDSTSLFAALET 956

Query: 947  LDKSLLNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLF 1006
            L+K++LND+  +Y +   S P  +++L+  +  YL+  G  +P  KIY+T++ +P F L 
Sbjct: 957  LNKAILNDIERHY-QSPDSNPYPSEDLLADLSKYLECAGLYDPLRKIYITTKPLPEFSLA 1015

Query: 1007 LFLYSLSVLSKVTYSSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYL 1066
            LFL++L  L ++ Y  + D  + KK  +    D   ++VGL TL  QFH D    +L YL
Sbjct: 1016 LFLFTLLQLPRLQYDDNLDSLVPKKKKDS--VDPTPLIVGLLTLLRQFHSDHTSLFLSYL 1073

Query: 1067 CQYI 1070
             QY+
Sbjct: 1074 GQYV 1077

This is a family of proteins conserved from plants to humans, in which two closely situated point mutations in the human protein lead to the condition of hereditary spastic paraplegia. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Length = 1077

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1083
PF10266		1081	Strumpellin: Hereditary spastic paraplegia protein	100.0
KOG3666\|consensus		1141		100.0
PF09735		1116	Nckap1: Membrane-associated apoptosis protein; Int	96.4

>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex	Back alignment and domain information

Probab=100.00  E-value=0  Score=3303.53  Aligned_cols=1042  Identities=52%  Similarity=0.899  Sum_probs=1024.6

Q ss_pred             hHHHHHHHhhhccCCCCc--ccccccccccceeecccCCCCchHHHhhhhcCcchHHhHHHHHHhHHHHHHHHHHHHHHH
Q psy7356          20 NAIIAELLRLKDHIPSIF--QQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLEILVRFYVVFENI   97 (1083)
Q Consensus        20 nAIiAEllRLsd~iP~~f--~~~~~~~ky~~Ii~DFsYfk~~e~~E~kIe~~~~L~~LDeefr~~~~~il~RFy~lFesI   97 (1083)
                      |||||||||||||||++|  ..+++ +||++|||||||||++|++|++||+|++|+|||||||+||+++++|||+|||||
T Consensus         1 ~aIiAEllRLs~~vP~~fl~~~~~~-~ky~~ii~DF~Yf~~~e~~e~~ie~~~~l~~ld~ef~~~~~~il~rF~~lF~si   79 (1081)
T PF10266_consen    1 NAIIAELLRLSDFVPSVFLDSKPEQ-SKYADIIFDFSYFKNPEQFEKKIESSPELQDLDEEFRENHIEILTRFYLLFESI   79 (1081)
T ss_pred             ChHHHHHHHHHhhCCHhhccCChhh-ccccceeechhhcCChHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999  33565 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhhheecCCCCC-CCHH
Q psy7356          98 YKFAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSYYRYSLNKS-QNFD  176 (1083)
Q Consensus        98 ~~Y~~dl~~yleel~~g~yiq~t~e~vl~d~~GkQLlcEalyLyGvmLL~lD~~i~G~vRERllVayyR~~~~~~-sn~d  176 (1083)
                      |+|++||++|+||+++|+|||||+|+||.|+|||||||||+||||||||+||++|||+|||||+||||||+|+++ +|+|
T Consensus        80 ~~y~~dl~~f~~el~~g~yiq~t~e~vl~~~~gkQLl~EalyLyGvmLl~lD~~i~g~vRERllVay~R~~~~~~~~n~d  159 (1081)
T PF10266_consen   80 YKYVTDLNRFLEELNEGVYIQQTLESVLQDEDGKQLLCEALYLYGVMLLLLDHKIPGPVRERLLVAYYRYKGSSDESNID  159 (1081)
T ss_pred             HHHHHHHHHHHHHhhccchHHhhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHhhccCccchhhHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999988 9999


Q ss_pred             HHHHHhhc----------CCCCCCChhhhhcCCCCCHHHHHHHHHHhcccccccccccCCCCCcchhhhhccccceeeee
Q psy7356         177 EVCQLFSS----------SKKGNGYPENVFSRIPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCL  246 (1083)
Q Consensus       177 ~vc~Llr~----------~~~p~~YPe~yF~Rvp~~~~~V~~vigrLrsDDiy~q~~~yP~p~HRs~ala~QasmLyV~L  246 (1083)
                      +||+|||+          +++|+||||+||+|||+|+.||+||||||||||||||+++||+|||||||||+|||||||||
T Consensus       160 ~v~~l~rstg~~~~~~~~~~~p~~yPe~yf~R~p~~~~~v~~vigrlrsdDiYnq~~~yP~peHRStala~Qa~mLyV~L  239 (1081)
T PF10266_consen  160 DVCKLLRSTGYSPDSGGAAKRPANYPEEYFSRVPLPESFVDMVIGRLRSDDIYNQISVYPHPEHRSTALATQASMLYVIL  239 (1081)
T ss_pred             HHHHHhhccCCCCCCcccccCccCCHHHHHHhCCCCHHHHHHHHHHHhhcccccccccCCChhhhhHHhhcchhHeeeee
Confidence            99999999          26899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccccccccchhhhhhhhhhcCCccEEeeccceeeeccccccccHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHH
Q psy7356         247 YFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAKLALSNSLETSNVKQYSTFHTDRIIKLTSQTN  326 (1083)
Q Consensus       247 ~F~P~~L~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~~~~~~~  326 (1083)
                      ||+|++|||++|+||||||||||||||||+|||+||||+|+|+||||||+||+||++++|||+++++|.++|++++.+++
T Consensus       240 ~F~P~iL~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~~AL~ntl~~~~vk~~~~~~~~~~~~l~~~~~  319 (1081)
T PF10266_consen  240 YFSPQILHNQTAKMREIVDKFFPDNWVISIYMGITVNLSDAWDPYKAAKTALNNTLTPQNVKELAQKHRKSVQKLLQELQ  319 (1081)
T ss_pred             eechHHhcCCchHHHHHHHHhCccceEEEeecceEEehhhhhcchHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhccCCCccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHh
Q psy7356         327 QLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHTSSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEF  406 (1083)
Q Consensus       327 ~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt~~~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taql  406 (1083)
                      ++|+||+|||||||||+++|++|+|+|||||||+||||+++    .....++++|+++++|.++++++++|+|||+||||
T Consensus       320 ~~L~EG~lte~~vLdn~~~ll~~ir~~Nv~lRWl~LHt~~~----~~~~~~~~~~~~~~~v~~~~~~~~l~~LLL~taql  395 (1081)
T PF10266_consen  320 QVLKEGVLTEEFVLDNIPKLLNLIRECNVTLRWLLLHTSRS----PGSSSSKKSKQLRDLVIQKFSDDDLFQLLLNTAQL  395 (1081)
T ss_pred             HHHHhccchHHHHHhhhHHHHHHHHHhhHHHHHHHhccccc----ccccccchhHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999887    44456899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHHhHHHhHHHHHHHHHHHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCCcchhhHHHHH
Q psy7356         407 ELKIKELLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSDEMGSVQKIVQ  486 (1083)
Q Consensus       407 E~~lk~~~~~lL~~K~~~W~~~K~e~~erm~eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d~~~agRkI~q  486 (1083)
                      |+++|+||+++|++|+++|+++|++|+|||+||||+|||++||+|++||+||++||++|++||++|||+|+++|||||+|
T Consensus       396 E~~lk~~~~~lL~~K~~~w~~~k~~~~~~m~eLa~~Fsg~~~L~~~~~n~~L~~Wf~~~~~~i~~Ld~~~~~~agrkI~q  475 (1081)
T PF10266_consen  396 EFELKEMFKTLLEEKEERWEECKKEASERMQELAEFFSGTKPLTRIEKNENLQQWFREMSKQIESLDYEDSTKAGRKIQQ  475 (1081)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccchhHHHHHHHHHHHHHhccccccchHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhCcccchHHHHHHHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCchHH
Q psy7356         487 FIQALDSVKEFHGLSSNAQVEQWIDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLI  566 (1083)
Q Consensus       487 LiqALeeVqefhql~~nlqVkQ~L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~~v~  566 (1083)
                      ||||||||||||||++||||||||+|||++||+|+|++||+|+++++|++|||+||||++|++||+.||++||+||++|+
T Consensus       476 liqaLeeV~efhql~~nlqvkq~l~etr~~L~~M~r~~ni~e~~l~~l~~i~D~SYaW~li~~~~~~mQ~~Ik~~P~~v~  555 (1081)
T PF10266_consen  476 LIQALEEVQEFHQLSSNLQVKQFLQETRQLLHQMIRTINIKEEVLITLQIISDFSYAWELIDSYTPIMQQRIKKDPSTVI  555 (1081)
T ss_pred             HHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHhCCcHHHHhHhHhhhhhhHHHHHHHHHHHHHHHHHhcCChHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccccccccccccCcchhHHHHHhHHHHHHHHHHHHhhcchHHHHHHHHHHHhhccccccCCCccchhH
Q psy7356         567 KLRALFLKLSTSLEIPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIPQTMFTLMADITNLQTNVMLEVPTRLDKDK  646 (1083)
Q Consensus       567 kLRa~FLKLaS~L~lPLlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLqIIP~smF~iL~~Ii~lqT~~ike~PtrleK~~  646 (1083)
                      ||||+||||||+||+||+|||||+|+|++|||+|||+|||+|||+||||||+|||+||++||++||+++||+||||||++
T Consensus       556 ~lRa~FlKLaS~L~~pl~Ri~Q~~s~Dl~sVS~yYS~eLv~~vR~VLqiIP~smF~il~~ii~l~t~~~ke~P~rl~K~~  635 (1081)
T PF10266_consen  556 KLRATFLKLASALELPLLRINQAESPDLSSVSQYYSSELVKYVRKVLQIIPESMFEILAQIIDLQTNVLKELPTRLEKDE  635 (1081)
T ss_pred             HHHHHHHHHHHHhccHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccccCCCccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhchhhHHHHHHHHHHHHHHhHHHhhhhcccceeEEeChhhhhHhHHHHHHHHHHHHHHhccccccCCCCCchhhHH
Q psy7356         647 LKDYAQLDTRFEIAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKTNKTDLM  726 (1083)
Q Consensus       647 Lk~yAQl~eR~~lA~lT~~ISvfTeGIL~M~~TlvGvIevDPkqLLEDGIRKELV~~ia~alh~~LiF~~k~~~~~~el~  726 (1083)
                      ||||||||+|+|+|++||+||+||+||||||+|+|||||||||||||||||||||+||++|||++|+|+.|.+.++++++
T Consensus       636 lk~~Aql~~R~~lA~~T~~is~ft~GIl~M~~T~vGvi~vdP~qLLedGIRkeLv~~i~~~l~~~L~F~~~~~~~~~~l~  715 (1081)
T PF10266_consen  636 LKDYAQLDERYQLAKLTHSISVFTEGILAMKTTLVGVIEVDPKQLLEDGIRKELVKQIAKALHEGLIFNEKPKPKASELQ  715 (1081)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhceeEecCHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999965555568999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhcc--------C----------------CCC
Q psy7356         727 TKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLS--------S----------------TSG  782 (1083)
Q Consensus       727 ~~L~~L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~Fl--------S----------------~~s  782 (1083)
                      ++|.+||++|+||||||||||||||||||||||||++||||||||||||+|+        |                ++|
T Consensus       716 ~~L~~L~~~~~g~R~SFEYIQDYvnI~GLrIW~EE~sRIInynVEqECn~Flr~kv~~w~S~yQs~~IPIP~f~p~~~~s  795 (1081)
T PF10266_consen  716 EKLQKLAARMDGFRRSFEYIQDYVNIHGLRIWQEEFSRIINYNVEQECNAFLRKKVQDWQSQYQSRAIPIPRFPPVDDNS  795 (1081)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999        1                349


Q ss_pred             CCchHHHHHHHHhhcCCCcceeecCcccccccCCCccccchHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHH-
Q psy7356         783 CTFVGRLADELVSMTDPKQSMYVENTTAWYNVKTQKEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLF-  861 (1083)
Q Consensus       783 ~nFiGRLa~eil~iTDPk~T~Yi~~~~~WyD~kt~~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f~iv~eLq~~~~~~~-  861 (1083)
                      +|||||||||||++||||+|+|+++++||||.||++||+|+++|++|++|+|++||+|||||+||||++|||++++.++ 
T Consensus       796 ~nFiGRLa~eiLriTDPk~T~Y~~~~~~WyD~kt~~EVlg~~~Fs~l~~aig~~GL~GLDrLlsfmi~keLq~~~~~~~~  875 (1081)
T PF10266_consen  796 VNFIGRLAREILRITDPKTTIYLEQMNGWYDKKTHKEVLGTKTFSRLQEAIGTFGLTGLDRLLSFMIVKELQNFLSTIQK  875 (1081)
T ss_pred             ccHHHHHHHHHHhhcCCCeeEeecccCceecCCCcchhhCHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hhcCCCchHHHHHHHhhhcCCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCchHH
Q psy7356         862 NYSNDKPCQDILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLH  941 (1083)
Q Consensus       862 ~~~~~~~~~~~l~~l~~~l~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia~eL~~s~K~~s~~L~  941 (1083)
                      ++.++++|.+++++|.++++|.+++|+|++|+|++++++++|.|+++++++++|||+||||+|||+||+++||+||++|+
T Consensus       876 ~l~~d~~~~~~L~~L~~~l~p~~~~p~n~~K~Y~~~~~~~~k~~~~ll~~i~~IGQ~QLLR~qIa~eL~~scK~dS~~L~  955 (1081)
T PF10266_consen  876 NLQKDKMWRDVLASLQKALTPESSIPENPSKVYEQAVKKISKSWPPLLDWILKIGQLQLLRRQIANELNSSCKFDSKSLF  955 (1081)
T ss_pred             HHhhhhhHHHHHHHHHHHhCCCccCcccchHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCchHHH
Confidence            77789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHhhhcCC-CCCCCCCchHHHHHHHHHHHHhcccCccccceeccCCCCChhHHHHHHHHHhcccccc
Q psy7356         942 LCLETLDKSLLNDLRLYYSKE-GMSLPTDNQELMTSICAYLKWIGQDNPYHKIYVTSRNIPYFPLFLFLYSLSVLSKVTY 1020 (1083)
Q Consensus       942 ~aL~tlN~all~di~~h~~dp-~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~kIYitt~~~~~l~l~lflf~ls~l~k~~y 1020 (1083)
                      +||+|||+|+|+|+++||+|| ++|+|+++  +++||++||++|||+||++|||||++|+|++|+++|+|+|+|||||+|
T Consensus       956 ~aL~tlN~ALL~Di~~hy~~p~s~p~P~e~--LL~eLs~yL~~~Gi~dPl~KIYittkplp~~~llLfLftIsqLpkl~y 1033 (1081)
T PF10266_consen  956 AALETLNKALLNDIEAHYRDPDSKPYPSED--LLPELSKYLEAAGISDPLRKIYITTKPLPNFPLLLFLFTISQLPKLQY 1033 (1081)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCCChHH--HHHHHHHHHHHhcCCCHHHhhcccCCCCcccHHHHHHHHHHhcchhcc
Confidence            999999999999999999999 67999877  999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccCCCCCCCCchhHHHHHHHHHhhcCcchHHHHHHHHHHHH
Q psy7356        1021 SSSQDLFLTKKGYEYCHTDCVVVLVGLHTLFHQFHKDIGEQYLVYLCQYI 1070 (1083)
Q Consensus      1021 ~~~l~~L~~k~~~d~~~~D~~p~vvG~~TlL~QFh~~~~~~fl~~l~qyi 1070 (1083)
                      |+++|+|++||++|+  +||+||+||++|+|||||++++++||+||||||
T Consensus      1034 ~~~lgsLv~kk~~d~--iD~~pfvvGi~TlLrQFH~~~t~~fL~yLgQYV 1081 (1081)
T PF10266_consen 1034 DKNLGSLVSKKKKDP--IDGTPFVVGILTLLRQFHSSHTELFLSYLGQYV 1081 (1081)
T ss_pred             cccccccccCCCCCC--CCcHhHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence            999999999999999  999999999999999999999999999999997

The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.

>KOG3666\|consensus	Back alignment and domain information

>PF09735 Nckap1: Membrane-associated apoptosis protein; InterPro: IPR019137 Nck-associated protein 1 is part of lamellipodial complex that controls Rac-dependent actin remodeling	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1083
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 88.4 bits (218), Expect = 8e-18
 Identities = 103/636 (16%), Positives = 197/636 (30%), Gaps = 163/636 (25%)

Query: 98  YK--FAINLNQYVENLENNVYIQESIESVFLDEEGCQLMCE------ALYLYGVMLL--- 146
           YK   ++  + +V+N +    +Q+  +S+   EE   ++         L L+  +L    
Sbjct: 18  YKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 147 -VTELYVPGAIRE--KLLVSYYRY-----SLNKSQNFDEVCQLFSSSKKGNGYPENVFSR 198
            + + +V   +R   K L+S  +      S+      ++  +L++ ++    Y  NV SR
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NV-SR 133

Query: 199 IPINENLVNMILGKLRTDDIYHSIVAYPLPQHRSTALANQASMLFVCLY----FDTSVLH 254
           +          L KLR                   AL        V +        + + 
Sbjct: 134 LQ-------PYL-KLRQ------------------ALLELRPAKNVLIDGVLGSGKTWVA 167

Query: 255 NNTANMREVVDKFFPDN--WIVSIYMGITVQLIDAWEP--YRAAKLALSNSLETSNVKQY 310
            +     +V  K       W+          +++  +   Y+      S S  +SN+K  
Sbjct: 168 LDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 311 STFHTD---RIIKLTSQTNQLLKDGALTEENVLDN--TNKILN-LARECNVTIRWLVLHT 364
                    R++K     N LL         VL N    K  N     C +    L+  T
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL---------VLLNVQNAKAWNAFNLSCKI----LL--T 271

Query: 365 SSNHETISGVAASKKSKQIKDIVSNNINMS-------DVFQLILNTSEFELKIKE----- 412
           +        V     +     I  ++ +M+        +    L+    +L  +E     
Sbjct: 272 TRF----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-REVLTTN 326

Query: 413 -----LLKALLEDKQNKWNSCKQECNERLNYLIELFSGAKPLPKVHKNQQLEKWFSEINS 467
                ++   + D    W++ K    ++L  +IE                LE   +E   
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-----------NVLE--PAEYRK 373

Query: 468 HLESLN-FSDEMGSVQKI-VQFIQAL----------DSVKEFHGLSSNAQVEQWIDESIK 515
             + L+ F     S   I    +  +            V + H  S    VE+   ES  
Sbjct: 374 MFDRLSVFPP---SA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL---VEKQPKESTI 426

Query: 516 YLN--IMVRSVNVKDKVMIHLQIIADLSYAWKL---IDQFTPLMQD----------AIKN 560
            +    +   V ++++  +H  I+    Y        D   P   D              
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 561 EPSLLIKL-RALFLKLSTSLE--IPLLRINQAESEDLISVSQYYSNELVTYMQHVLQIIP 617
           E    + L R +FL     LE  I         S  +++  Q    +L  Y  ++    P
Sbjct: 485 EHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQ----QLKFYKPYICDNDP 539

Query: 618 QTMFTLMADITNLQTNVMLEVPTRLDKDKLKDYAQL 653
                L+  I +     + ++   L   K  D  ++
Sbjct: 540 -KYERLVNAILDF----LPKIEENLICSKYTDLLRI 570

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1083
3p8c_B		1128	NCK-associated protein 1; actin polymerization, pr	97.5

>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}	Back alignment and structure

Probab=97.50  E-value=0.49  Score=60.09  Aligned_cols=887  Identities=15%  Similarity=0.213  Sum_probs=433.8

Q ss_pred             HHHHhhhhhHHHHHHHhhhc------cCCCCcccccccccccceeecccCCCCchHHHhhhhcCcchHHhHHHHHHhHHH
Q psy7356          12 ILELVSRGNAIIAELLRLKD------HIPSIFQQTDVNKQYSDLIIDFSYFSQNETVDNKIEGSQQLQELDEKIRDTYLE   85 (1083)
Q Consensus        12 lL~lVsrGnAIiAEllRLsd------~iP~~f~~~~~~~ky~~Ii~DFsYfk~~e~~E~kIe~~~~L~~LDeefr~~~~~   85 (1083)
                      |.-|-.||.-+++=|.+++.      --|..|.+..-.+-.+.|+=.   |.+.+.-.+ +.+   ++.+ -+.++.+.+
T Consensus        17 l~iLn~r~~g~LtrlYnikk~~~~~k~kp~fl~dk~~e~~iK~i~kK---FP~id~~~~-~~~---~~~~-~~~~~ei~~   88 (1128)
T 3p8c_B           17 LTILNDRGVGMLTRLYNIKKACGDPKAKPSYLIDKNLESAVKFIVRK---FPAVETRNN-NQQ---LAQL-QKEKSEILK   88 (1128)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTSCGGGTCTTTHHHHHHHHHH---TTCCC-----CCT---THHH-HHTHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcCChhhhHHHHHHHHhc---CCCCCcccc-ccc---chHH-HHHHHHHHH
Confidence            45677899999999998874      345544331100111222212   222221111 121   2222 245666788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHhhcCCcchhhhhhhhh
Q psy7356          86 ILVRFYVVFENIYKFAINLNQYVENLENN-VYIQESIESVFLDEEGCQLMCEALYLYGVMLLVTELYVPGAIREKLLVSY  164 (1083)
Q Consensus        86 il~RFy~lFesI~~Y~~dl~~yleel~~g-~yiq~t~e~vl~d~~GkQLlcEalyLyGvmLL~lD~~i~G~vRERllVay  164 (1083)
                      .++-+|..|--+..|-.-..+-+-++... ..+.     +=.|.+=-...++-+--|.-+.+++.+--+    .|++++-
T Consensus        89 ~L~~yY~tf~Dl~dfrd~~~elL~~i~s~~~~ld-----i~~N~~lT~~yLdL~v~yvkv~lllsri~d----rK~ll~l  159 (1128)
T 3p8c_B           89 NLALYYFTFVDVMEFKDHVCELLNTIDVCQVFFD-----ITVNFDLTKNYLDLIITYTTLMILLSRIEE----RKAIIGL  159 (1128)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-----TTTSHHHHHHHHHHHHHHHHHHHHHHTCTT----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeec-----cccCHHHHHHHHHHHHHHHHHHHHHHhhch----HHHHHHH
Confidence            88888888877777766555555555421 1111     112334455667778888888888877433    3556655


Q ss_pred             eec-----CCCCCCCHHHHHHHhhcCCCCCCC-hhhhhcCCCCCHHHHHHHHH--------------Hhccccccccccc
Q psy7356         165 YRY-----SLNKSQNFDEVCQLFSSSKKGNGY-PENVFSRIPINENLVNMILG--------------KLRTDDIYHSIVA  224 (1083)
Q Consensus       165 yR~-----~~~~~sn~d~vc~Llr~~~~p~~Y-Pe~yF~Rvp~~~~~V~~vig--------------rLrsDDiy~q~~~  224 (1083)
                      |.+     +|.+++++..+.+++-.-..|-.. .|++-   |+.+ .|..++.              .+|++...+-++.
T Consensus       160 yn~a~~~~~~~~epsy~RL~q~i~~yd~PlkkL~eef~---p~~~-~I~~aL~Sl~~~~~~r~~~a~~wR~~~~LSl~~~  235 (1128)
T 3p8c_B          160 YNYAHEMTHGASDREYPRLGQMIVDYENPLKKMMEEFV---PHSK-SLSDALISLQMVYPRRNLSADQWRNAQLLSLISA  235 (1128)
T ss_dssp             HHHHHHTTSSSCCTTHHHHHHHHHHTSSHHHHHHHHTT---TTHH-HHHHHHHGGGGTHHHHSCCHHHHHHTTTTCSSSS
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHHHhhhHHHHHHHHHH---HHHH-HHHHHHHHhHHHHHHccCcHHHHhhcCcCCCcCC
Confidence            553     355557788888887642111111 02211   3333 2222222              3555554444432


Q ss_pred             ---CCCCCcch-hh--hhccccc---eeeeeeeccccccccchhhhhhhhhhcCCccEEeeccceeeeccccccccHHHH
Q psy7356         225 ---YPLPQHRS-TA--LANQASM---LFVCLYFDTSVLHNNTANMREVVDKFFPDNWIVSIYMGITVQLIDAWEPYRAAK  295 (1083)
Q Consensus       225 ---yP~p~HRs-~a--la~Qasm---LyV~L~F~P~~L~~~~a~MREIVDk~F~DnWVi~~ymG~~vnL~~~W~~ykAA~  295 (1083)
                         -++|.|=- .|  +..=..|   .....-.+|+.|.++ +..-+|+.---.+||||++|=-.++++-+.-+.+-.-.
T Consensus       236 P~~~~~pa~~d~~~~ells~e~m~~WIifg~L~cp~~L~~~-~~~~~l~~~aL~~~~vl~LfRdevi~iH~~~q~~~~s~  314 (1128)
T 3p8c_B          236 PSTMLNPAQSDTMPCEYLSLDAMEKWIIFGFILCHGILNTD-ATALNLWKLALQSSSCLSLFRDEVFHIHKAAEDLFVNI  314 (1128)
T ss_dssp             GGGTTSCCCCTTHHHHHSCHHHHHHHHHHHHHHTTHHHHHC-HHHHHHHHHHHTTCSEEEEETTEEEEHHHHHHHHHTTC
T ss_pred             hhhhCCcccccchhHHHHhHHHHHHHHeeeeeecchhhccC-hhHHHHHHHHhccCCEEEEecceeeeHHHHHHHHHHHH
Confidence               23333310 00  1111111   111222358888653 34458888899999999999999999988766221100


Q ss_pred             HHhhhccchhhHHHHH--------HHHHHHHH---HHHHHHHHHhhhcccchhhhccCcHHHHHHHhhhhhhhhhhhhcc
Q psy7356         296 LALSNSLETSNVKQYS--------TFHTDRII---KLTSQTNQLLKDGALTEENVLDNTNKILNLARECNVTIRWLVLHT  364 (1083)
Q Consensus       296 ~AL~ntl~~~~vk~~~--------~~~~~~~~---~~~~~~~~~l~EG~L~ee~vLdni~~l~~~iR~~Nv~lRWl~LHt  364 (1083)
                      .  +..-..+.||+..        ..|++.-.   ..+.++-.+++.   .-..+--+++-++..+.=+.-=+-|++=|+
T Consensus       315 K--~y~K~v~~ikE~~~~A~~~a~~~HreRR~~LR~~Lkel~~i~~D---qPgLLgPK~~~v~~aLs~ArdEV~W~~rH~  389 (1128)
T 3p8c_B          315 R--GYNKRINDIRECKEAAVSHAGSMHRERRKFLRSALKELATVLSD---QPGLLGPKALFVFMALSFARDEIIWLLRHA  389 (1128)
T ss_dssp             G--GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CGGGGTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             H--hhhhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHhc---CCcccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            0  0011112233322        12222222   222222222221   111223455556666667777889999997


Q ss_pred             CCCccccccccchhhhHHHHHHHhhCCChhHHHHHHHhhhHh-------HHHHHHHHHHHHHhHHHhHHHhHHHHHHHHH
Q psy7356         365 SSNHETISGVAASKKSKQIKDIVSNNINMSDVFQLILNTSEF-------ELKIKELLKALLEDKQNKWNSCKQECNERLN  437 (1083)
Q Consensus       365 ~~~~~~~~~~~~~k~~r~l~~~v~~~~~~~~l~~LLL~taql-------E~~lk~~~~~lL~~K~~~W~~~K~e~~erm~  437 (1083)
                      ...       |  ||.       ..++.+..+-.||--..++       ...++.-|-+-|.+=+.-          -++
T Consensus       390 ~~~-------p--kk~-------~~d~~D~~i~eLLf~m~eLr~Lv~k~~~vIqrYy~qyLs~~Da~----------~L~  443 (1128)
T 3p8c_B          390 DNM-------P--KKS-------ADDFIDKHIAELIFYMEELRAHVRKYGPVMQRYYVQYLSGFDAV----------VLN  443 (1128)
T ss_dssp             HHS-------C--CSS-------TTTTCCTTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTHHH----------HHH
T ss_pred             ccC-------C--CCC-------cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH----------HHH
Confidence            433       1  220       1123444444444332222       122222222222221111          111


Q ss_pred             HHHHHccCCCCCCccccchhHHHHHHHHHHhhhhcccCC---c---c-hhhHHHHHHHHHHHHHHhh-hCcccchHHHHH
Q psy7356         438 YLIELFSGAKPLPKVHKNQQLEKWFSEINSHLESLNFSD---E---M-GSVQKIVQFIQALDSVKEF-HGLSSNAQVEQW  509 (1083)
Q Consensus       438 eLae~FsG~~pL~r~~kne~L~~WF~~is~~I~~Ld~~d---~---~-~agRkI~qLiqALeeVqef-hql~~nlqVkQ~  509 (1083)
                      +.-..-+|   +     .+....=+..+.+++++|+.+.   +   . .+=|.=-==+||.-.|..- .++..+=.+-.+
T Consensus       444 ~~iq~l~~---~-----p~ees~i~ss~~~tl~~L~~~q~e~~~~~Df~~lRlDW~Rlqa~~S~~~~~l~l~~~~~l~~~  515 (1128)
T 3p8c_B          444 ELVQNLSV---C-----PEDESIIMSSFVNTMTSLSVKQVEDGEVFDFRGMRLDWFRLQAYTSVSKASLGLADHRELGKM  515 (1128)
T ss_dssp             HHHTTCSC---C-----CHHHHHHHHHHHHHHHTCCHHHHHTTCCCCCHHHHHHHHHHHHHHHSTTCSSCGGGCHHHHHH
T ss_pred             HHHHHhcc---C-----CHHHHHHHHHHHHHHHcCChhhhccCCCCCcHHHHHHHHHHHHHHHccccCcCcchhHHHHHH
Confidence            11111110   1     1111122444444444444311   0   0 1112111112333333211 111111111111


Q ss_pred             HHHHHHHHHHHHHHccccchhhhhhhhhcccchhhhhhhhhHHHHHHHhhhCCchHHHHHHHHHHHHhhccc------c-
Q psy7356         510 IDESIKYLNIMVRSVNVKDKVMIHLQIIADLSYAWKLIDQFTPLMQDAIKNEPSLLIKLRALFLKLSTSLEI------P-  582 (1083)
Q Consensus       510 L~etr~~L~~M~r~inike~vl~~i~~i~D~SYAW~lid~yt~~mQ~~Ik~~P~~v~kLRa~FLKLaS~L~l------P-  582 (1083)
                      +..+ -+-.+|+      |++-..+.=.||+|=.|-.-..|+.....-+. .|+- ..--..|.+++|..=-      | 
T Consensus       516 mN~~-~fhsk~V------D~lde~L~e~sdLs~l~FY~~~~~~~F~~cl~-~p~q-~ry~~af~~ics~F~~~~h~~cPE  586 (1128)
T 3p8c_B          516 MNTI-IFHTKMV------DSLVEMLVETSDLSIFCFYSRAFEKMFQQCLE-LPSQ-SRYSIAFPLLCTHFMSCTHELCPE  586 (1128)
T ss_dssp             HHHH-HHHHHHH------HCHHHHHHHHHCCGGGGGCHHHHHHHHHHHHH-SHHH-HTTTTHHHHHGGGGGGGCCTTCGG
T ss_pred             HHHH-HHHHHHH------hhHHHHHHHhcchhheeehhHHHHHHHHHHhc-Cccc-chHHHHHHHHHhchhccCCccChh
Confidence            1111 0111111      12222334456777666655555555555543 3442 2233467777765411      2 


Q ss_pred             -ccccccccCcchhHHHHHhHHHHHHHHHHHHh------------hcchHHHHHHHHHHHhhccccccCCCc--cchhHH
Q psy7356         583 -LLRINQAESEDLISVSQYYSNELVTYMQHVLQ------------IIPQTMFTLMADITNLQTNVMLEVPTR--LDKDKL  647 (1083)
Q Consensus       583 -LlRI~Qa~S~Dl~sVS~yYS~eLv~~vR~VLq------------IIP~smF~iL~~Ii~lqT~~ike~Ptr--leK~~L  647 (1083)
                       -..|.    ++-.+..+-+=+|+.+.++.++.            .-|+.--..+.+...-  ..-|.-|+|  .++++=
T Consensus       587 E~~~i~----~~sl~~~~~fLe~ia~~~~~~i~~i~~~~~~l~~qLlP~~aA~~i~~~~~~--k~kk~~~~k~~~~~~~P  660 (1128)
T 3p8c_B          587 ERHHIG----DRSLSLCNMFLDEMAKQARNLITDICTEQCTLSDQLLPKHCAKTISQAVNK--KSKKQTGKKGEPEREKP  660 (1128)
T ss_dssp             GHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGGHHHHHHHTTC----------------CCT
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCHHHHHHHHHHHHHH--hcccccCccCCCCCCCC
Confidence             11122    34667777777889999999883            3333333333321111  101111211  001000


Q ss_pred             hhhhchhhHHH---HHHHHHHHHHHhHHHhhhhcccceeEEeChhhhhHhHHHHHHHHHHHHHHhccccccCCCCC--ch
Q psy7356         648 KDYAQLDTRFE---IAHLTHSISVFTQGILRMKSTLVGIVCIDPKQLLHNGIKKQLAETILTELNKGLTFNTKSKT--NK  722 (1083)
Q Consensus       648 k~yAQl~eR~~---lA~lT~~ISvfTeGIL~M~~TlvGvIevDPkqLLEDGIRKELV~~ia~alh~~LiF~~k~~~--~~  722 (1083)
                      =.=++...|..   +=++--.+.-+-.-|--|++--|==-..-|++-|-+.+    -.++++.++....||+....  -+
T Consensus       661 G~ES~r~~r~~~t~~dkl~~~LteLc~aln~~~~i~V~dh~f~PrEyL~~~L----e~~f~~~l~~~~~~~~~~~~i~RP  736 (1128)
T 3p8c_B          661 GVESMRKNRLVVTNLDKLHTALSELCFSINYVPNMVVWEHTFTPREYLTSHL----EIRFTKSIVGMTMYNQATQEIAKP  736 (1128)
T ss_dssp             TGGGCCSCTTSCCHHHHHHHHHHHHHHHHTSCSCEEETTEEECHHHHHHHHH----HHHHHHHHHHHTTCBTTTTBCCCH
T ss_pred             CccccccChHHHhhHHHHHHHHHHHHHHhccCCCeeEEeeeeccHHHHHHHH----HHHHHHHHHHHhccCCCccccCCh
Confidence            00011111111   11111111122222333555444444567999985554    44445555545567653110  12


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHhhhhHHhhhccCCCCC----CchHHHHHHHHhhcC
Q psy7356         723 TDLMTKLGQLAVVMDGHKRSFEYIQDYVGIYGLKVWYEVLNQVIEETVSSEIDSLSSTSGC----TFVGRLADELVSMTD  798 (1083)
Q Consensus       723 ~el~~~L~~L~~~~~g~rrSFEYIQDYvnI~GLkIW~eE~sRIInynVE~Ecn~FlS~~s~----nFiGRLa~eil~iTD  798 (1083)
                      +++.       ..+..|.....=+.-||+|+        ++|+|+--.=|||..+=|.+..    ++..--..-|+|--.
T Consensus       737 Sell-------~~l~a~m~vlq~~e~~v~iD--------vt~~i~~vLLqqtq~~D~~G~~tit~~yt~WYle~llr~~s  801 (1128)
T 3p8c_B          737 SELL-------TSVRAYMTVLQSIENYVQID--------ITRVFNNVLLQQTQHLDSHGEPTITSLYTNWYLETLLRQVS  801 (1128)
T ss_dssp             HHHH-------HHHHHHHHHHHHGGGTSSCC--------HHHHHHHHHHHTTSSBCTTSCBCHHHHHHHHHHHTHHHHHH
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHhcch--------HHHHHHHHHHHhCCccccCCCccHHHHHHHHHHHHHHHhcc
Confidence            4555       45556777777788899999        4566666666888776553322    344444455776666


Q ss_pred             CCcceeecCcccccccCC-C------ccccchHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHhhcCCCchHH
Q psy7356         799 PKQSMYVENTTAWYNVKT-Q------KEIFNMKIFSLIIKAIGISGLVGLDNVLGFRIVKNIQSVFSQLFNYSNDKPCQD  871 (1083)
Q Consensus       799 Pk~T~Yi~~~~~WyD~kt-~------~Ev~~~~~fs~l~~alg~~GL~gLDrL~~f~iv~eLq~~~~~~~~~~~~~~~~~  871 (1083)
                      ....+|.+...+.....+ |      +|..+..-...+.+-+||+|+--||+-+-.+|+..++.+-+.+.    ...  +
T Consensus       802 ~~~iv~sp~~~~Fvs~~~~g~~~f~AE~~tD~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~elk~~v~----~N~--~  875 (1128)
T 3p8c_B          802 NGHIAYFPAMKAFVNLPTENELTFNAEEYSDISEMRSLSELLGPYGMKFLSESLMWHISSQVAELKKLVV----ENV--D  875 (1128)
T ss_dssp             TTSEEEETTTTEEEECSSSCCCCSCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----TTH--H
T ss_pred             CCceEEccHHHHhhcCCCCCCCCcCHHhcCCHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhH--H
Confidence            679999999999977542 2      34556677778889999999999999988888776665544433    334  7


Q ss_pred             HHHHHhhhcCCCCCCCCCCcCcHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCchHHHHHHHHhHHH
Q psy7356         872 ILAQMSKELSPNTNPISNPTKLYPQYLSKMNKYLMGVNDSLIQIGQLQILRQLLRHELSSCAQFESKNLHLCLETLDKSL  951 (1083)
Q Consensus       872 ~l~~l~~~l~p~~~~~~~~~k~Y~~~~~~~~~~~~~~~~~i~~IGQ~QLLR~~Ia~eL~~s~K~~s~~L~~aL~tlN~al  951 (1083)
                      +|..+......+        ..-+++.+++ ...-.++.....||++==.|+++...|+.--+-+...|.++++.+    
T Consensus       876 ~L~~lr~~~~~~--------~~m~~~lk~l-~~~d~~l~r~~~iG~iL~FR~ll~eAl~~Vl~~~~Pfl~s~i~~~----  942 (1128)
T 3p8c_B          876 VLTQMRTSFDKP--------DQMAALFKRL-SSVDSVLKRMTIIGVILSFRSLAQEALRDVLSYHIPFLVSSIEDF----  942 (1128)
T ss_dssp             HHHHHHHCTTCH--------HHHHHHHTTC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH----
T ss_pred             HHHHHHHhcCCH--------HHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH----
Confidence            788777755321        1224444443 336689999999999999999999999888877888887665554    


Q ss_pred             HHHHHhhhcCCCCCCCCCchHHHHHHHHHHHHhcccCccc---cceeccC-----CCC---ChhHHHHHHHHHhcccccc
Q psy7356         952 LNDLRLYYSKEGMSLPTDNQELMTSICAYLKWIGQDNPYH---KIYVTSR-----NIP---YFPLFLFLYSLSVLSKVTY 1020 (1083)
Q Consensus       952 l~di~~h~~dp~~p~p~~~~~ll~eL~~~L~~~Gi~dPl~---kIYitt~-----~~~---~l~l~lflf~ls~l~k~~y 1020 (1083)
                          ..|+.. +.|.  ....-+.+|   =.++|+.-+..   +--+...     .++   .++.++..|+-..+|+...
T Consensus       943 ----~~~~~~-~~~~--k~~l~v~~l---A~~aG~~~~vD~~L~~al~~~~~~~~~~d~~~~~~~lLlv~~Avsl~~~~~ 1012 (1128)
T 3p8c_B          943 ----KDHIPR-ETDM--KVAMNVYEL---SSAAGLPCEIDPALVVALSSQKSENISPEEEYKIACLLMVFVAVSLPTLAS 1012 (1128)
T ss_dssp             ----HHC------CC--SSHHHHHHH---HHHTTCCCSSCHHHHHHHTC------CHHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             ----HHhCCC-cCcc--hhhhhHHHH---HHhcCCCCCCCHHHHHHHHhhccCCCCChHHHHHHHHHHHHHHHHhhhhhc
Confidence                445432 2221  111112344   46778774432   2222211     122   2577777888888888766


Q ss_pred             cc
Q psy7356        1021 SS 1022 (1083)
Q Consensus      1021 ~~ 1022 (1083)
                      ++
T Consensus      1013 ~~ 1014 (1128)
T 3p8c_B         1013 NV 1014 (1128)
T ss_dssp             CG
T ss_pred             CC
Confidence            54

PyMOL of 3p8c

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00