Psyllid ID: psy7369

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MSDMAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLAIA
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHccccEEEEEEcccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccHHHHHHHHHHHHHccEEEEEEEEcccccccccccccEEEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHcHHHHHccccHHHHHHHcccccccccccEEEEEEcccccccEEEcc
Coil and Loop (DISEMBL)
msdmavqydrltDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGdtyisdrfytldprsrplydlkYITFGFAYLQDMVEQSIIQehtgrestpgivlqqfpypcyiedqFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGlsngvhwtAWFIDSIVVMIITAVLLSLLLVCIdfnkivpyndsataendAFLRMDNNTLWALInftqpgydklkptltysirgncncntlaia
Flexible Loop (DISEMBL)
MSDMAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTltysirgncncntlaia
Low Complexity Region (SEG)
MSDMAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLAIA
Disordered region (IsUnstruct)
******QYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLA**
Disordered Region (DISOPRED)
***MAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLAIA
Disordered Region (DISEMBL)
MSDMAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLAIA
Disordered Region (DISPRO)
***MAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLAIA
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDMAVQYDRLTDVTGNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSIRGNCNCNTLAIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
P41233	2261	ATP-binding cassette sub-	yes	N/A	0.558	0.065	0.456	2e-40
O95477	2261	ATP-binding cassette sub-	yes	N/A	0.558	0.065	0.450	2e-39
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.550	0.063	0.442	6e-35
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.550	0.064	0.449	6e-35
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.460	0.056	0.434	3e-32
Q8IZY2	2146	ATP-binding cassette sub-	no	N/A	0.460	0.056	0.426	7e-31
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.460	0.056	0.418	3e-30
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.441	0.048	0.449	1e-26
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.441	0.048	0.449	2e-26
P41234	2434	ATP-binding cassette sub-	no	N/A	0.441	0.048	0.440	1e-24

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 110/151 (72%), Gaps = 3/151 (1%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct: 569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGSEKKTGVYVQQMPYPCYV 628

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLKE MR+MGL NG+ W +WF+ 
Sbjct: 629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFVS 688

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           S++ ++++A    LL+V +    ++PY+D +
Sbjct: 689 SLIPLLVSA---GLLVVILKLGNLLPYSDPS 716

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.
Mus musculus (taxid: 10090)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score =  162 bits (410), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 68/151 (45%), Positives = 108/151 (71%), Gaps = 3/151 (1%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct: 569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYMQQMPYPCYV 628

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL N + W +WFI 
Sbjct: 629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFIS 688

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           S++ ++++A    LL+V +    ++PY+D +
Sbjct: 689 SLIPLLVSA---GLLVVILKLGNLLPYSDPS 716

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 3/149 (2%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DR++   PR+ P+ D +YI  GFAYLQDMVEQ I++     E   G+ LQQ PYPC++
Sbjct: 584 IKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGIVKSQMQAEPPIGVYLQQMPYPCFV 643

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F+  +++ FP+FMVL+W+++ SM  K IV EK+ RLKE ++  G+SN V W  WF+D
Sbjct: 644 DDSFMIILNRCFPIFMVLAWIYSVSMTVKGIVLEKELRLKETLKNQGVSNAVIWCTWFLD 703

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
           S  +M ++  LL+L ++     +I+ Y+D
Sbjct: 704 SFSIMALSIFLLTLFIM---HGRILHYSD 729

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 3/149 (2%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DR++   PR+ P+ D +YI  GFAYLQDMVEQ I +     E+  GI LQQ PYPC++
Sbjct: 584 IKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQVQAEAPVGIYLQQMPYPCFV 643

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F+  +++ FP+FMVL+W+++ SM  KSIV EK+ RLKE ++  G+SN V W  WF+D
Sbjct: 644 DDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLD 703

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
           S  +M ++  LL++ ++     +I+ Y+D
Sbjct: 704 SFSIMSMSIFLLTIFIM---HGRILHYSD 729

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/122 (43%), Positives = 87/122 (71%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D+F+   P + PL DL+Y+  GF YLQD++EQ+ ++  +GR+S  G+ LQQ P+PCY+
Sbjct: 477 IRDKFWDPGPSADPLMDLRYVWGGFVYLQDLLEQAAVRVLSGRDSRAGLYLQQMPHPCYV 536

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLF+ L+W+++ ++  K++V EK+ RL+E MR MGLS  V W  WF+ 
Sbjct: 537 DDVFLRVLSRSLPLFLTLAWIYSVALTVKAVVREKETRLRETMRAMGLSRAVLWLGWFLS 596

Query: 186 SI 187
            +
Sbjct: 597 CL 598

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3

 Score =  134 bits (337), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 52/122 (42%), Positives = 84/122 (68%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DRF+   P + PL DL+Y+  GF YLQD+VE++ ++  +G     G+ LQQ PYPCY+
Sbjct: 479 IRDRFWDPGPAADPLTDLRYVWGGFVYLQDLVERAAVRVLSGANPRAGLYLQQMPYPCYV 538

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLF+ L+W+++ ++  K++V EK+ RL++ MR MGLS  V W  WF+ 
Sbjct: 539 DDVFLRVLSRSLPLFLTLAWIYSVTLTVKAVVREKETRLRDTMRAMGLSRAVLWLGWFLS 598

Query: 186 SI 187
            +
Sbjct: 599 CL 600

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Homo sapiens (taxid: 9606)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 83/122 (68%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D+F+   P + P  DL+Y+  GF YLQD++EQ+ ++   G  S  G+ LQQ P+PCY+
Sbjct: 476 IRDKFWDPGPSADPFMDLRYVWGGFVYLQDLLEQAAVRVLGGGNSRTGLYLQQMPHPCYV 535

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLF+ L+W+++ ++  K++V EK+ RL+E MR MGLS  V W  WF+ 
Sbjct: 536 DDVFLRVLSRSLPLFLTLAWIYSVALTVKAVVREKETRLRETMRAMGLSRAVLWLGWFLS 595

Query: 186 SI 187
            +
Sbjct: 596 CL 597

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 85  YITFGFAYLQDMVEQSIIQEHTGREST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVL 143
           Y  +GF ++QDM+E++II    G +   PG  +Q FPYPCY  D F+  +    PL MV+
Sbjct: 654 YFLYGFVWIQDMIERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVI 713

Query: 144 SWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201
           SWV++ +M  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L
Sbjct: 714 SWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAIL 771

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 76/118 (64%), Gaps = 1/118 (0%)

Query: 85  YITFGFAYLQDMVEQSIIQEHTGREST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVL 143
           Y  +GF ++QDM+E++II    G +   PG  +Q FPYPCY  D F+  +    PL MV+
Sbjct: 654 YFLYGFVWIQDMMERAIIDTFVGHDVVEPGSYVQMFPYPCYTRDDFLFVIEHMMPLCMVI 713

Query: 144 SWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201
           SWV++ +M  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L
Sbjct: 714 SWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAIL 771

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|P41234|ABCA2_MOUSE ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 85  YITFGFAYLQDMVEQSIIQEHTGREST-PGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVL 143
           Y  +G    QDM+E++II    G +   PG  +Q FPYPCY  D F+  +    PL MV+
Sbjct: 653 YFLYGLRLDQDMMERAIINTFVGHDVVEPGNYVQMFPYPCYTRDDFLFVIEHMMPLCMVI 712

Query: 144 SWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL 201
           SWV++ +M  + IV EK+ RLKE+M+ MGL+N VHW AWFI   V + I+   L+ +L
Sbjct: 713 SWVYSVAMTIQHIVAEKEHRLKEVMKTMGLNNAVHWVAWFITGFVQLSISVTALTAIL 770

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
391346004	2232	PREDICTED: ATP-binding cassette sub-fami	0.550	0.065	0.604	7e-46
427784385	2338	Putative lipid exporter abca1 [Rhipiceph	0.547	0.062	0.58	2e-43
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.550	0.064	0.503	4e-43
427795723	1079	hypothetical protein, partial [Rhipiceph	0.547	0.134	0.58	4e-43
405952754	2469	ATP-binding cassette sub-family A member	0.509	0.054	0.566	5e-41
405950989	2208	ATP-binding cassette sub-family A member	0.543	0.065	0.496	4e-40
395515458	2261	PREDICTED: ATP-binding cassette sub-fami	0.558	0.065	0.483	4e-39
296190476	2261	PREDICTED: LOW QUALITY PROTEIN: ATP-bind	0.558	0.065	0.476	6e-39
432095079	2355	ATP-binding cassette sub-family A member	0.558	0.062	0.463	8e-39
149738947	2261	PREDICTED: ATP-binding cassette sub-fami	0.558	0.065	0.463	9e-39

>gi|391346004|ref|XP_003747270.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Metaseiulus occidentalis]

 Score =  189 bits (481), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 115/149 (77%), Gaps = 3/149 (2%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DR Y   PR RP  DLKYITFGFAYLQD+VEQ+II  HTG  +  G+ LQQFPYPCYI
Sbjct: 600 IEDRVYHPGPRRRPAIDLKYITFGFAYLQDLVEQAIISLHTGWTNNTGVYLQQFPYPCYI 659

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
            DQFI  ++++FP+FMVLSWV++ SMI K+IV EK+ RLKE M+VMGL+N V WTAWFI+
Sbjct: 660 FDQFIVTIAESFPMFMVLSWVYSFSMIIKTIVREKELRLKEAMKVMGLNNSVLWTAWFIN 719

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
           S + M +++VLL+L+L    F KI+ ++D
Sbjct: 720 SFLFMFLSSVLLTLIL---KFGKILEHSD 745

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784385|gb|JAA57644.1| Putative lipid exporter abca1 [Rhipicephalus pulchellus]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 112/150 (74%), Gaps = 5/150 (3%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DR +   PR RP  DLKY+TFGFAYLQD+VE SII   TG E T G+ LQQFPYPCYI
Sbjct: 603 IEDRIFRPGPRRRPTIDLKYLTFGFAYLQDLVEHSIIALQTGWEKTTGVYLQQFPYPCYI 662

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
            DQFI  ++++FP+FMVLSWV++ +M+ KSIV EK+ RLKE+MRVMGL +GV W +WFID
Sbjct: 663 FDQFIVTIAESFPMFMVLSWVYSFAMLIKSIVREKELRLKEVMRVMGLGSGVLWLSWFID 722

Query: 186 SIVVMIITAVLLSLLLVCI-DFNKIVPYND 214
           +   M+I+    SLLL CI  F +++ ++D
Sbjct: 723 AFGFMLIS----SLLLTCILKFGQVLDHSD 748

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 116/151 (76%), Gaps = 5/151 (3%)

Query: 68  DRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGR--ESTPGIVLQQFPYPCYI 125
           DRF+T  PR++PL D+KY+ +GF+Y+QDMVE +II+EHTG   +   G+ +QQFPYPCYI
Sbjct: 562 DRFWTPGPRAKPLPDMKYVVYGFSYIQDMVEHAIIREHTGDSLDEDIGMTVQQFPYPCYI 621

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
            D+F  A+S++ PLFM+LSW++A S++ K+IVYEK++RLKE+M+ MGL+N VHW AWFI 
Sbjct: 622 NDKFTMAISRSLPLFMILSWIYAVSILVKAIVYEKEQRLKEVMKTMGLTNAVHWCAWFIT 681

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           + V+M+++     LLL+ +    ++ ++D +
Sbjct: 682 AFVMMLLSVF---LLLIVLKVGTVLEHSDGS 709

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427795723|gb|JAA63313.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score =  181 bits (458), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 112/150 (74%), Gaps = 5/150 (3%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DR +   PR RP  DLKY+TFGFAYLQD+VE SII   TG E T G+ LQQFPYPCYI
Sbjct: 200 IEDRIFRPGPRRRPTIDLKYLTFGFAYLQDLVEHSIIALQTGWEKTTGVYLQQFPYPCYI 259

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
            DQFI  ++++FP+FMVLSWV++ +M+ KSIV EK+ RLKE+MRVMGL +GV W +WFID
Sbjct: 260 FDQFIVTIAESFPMFMVLSWVYSFAMLIKSIVREKELRLKEVMRVMGLGSGVLWLSWFID 319

Query: 186 SIVVMIITAVLLSLLLVCI-DFNKIVPYND 214
           +   M+I+    SLLL CI  F +++ ++D
Sbjct: 320 AFGFMLIS----SLLLTCILKFGQVLDHSD 345

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405952754|gb|EKC20528.1| ATP-binding cassette sub-family A member 1 [Crassostrea gigas]

 Score =  174 bits (440), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 77/136 (56%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 56  MSTALIGDT-YISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGI 114
           M TA I  T  I D+++   PR+ P  D KYIT+GFAY+QDMV+ +II   T ++   G+
Sbjct: 679 MDTAKIDKTTKIQDKYWRPGPRANPGTDTKYITYGFAYIQDMVDHAIINVQTQKQVEIGV 738

Query: 115 VLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLS 174
             QQFPYPCY  D+FI A+S++ PLF+VL+WV + +MICKSIVYEK+ RLKE+M++MGLS
Sbjct: 739 ETQQFPYPCYTRDRFIYAISRSLPLFLVLAWVLSVAMICKSIVYEKENRLKEVMKIMGLS 798

Query: 175 NGVHWTAWFIDSIVVM 190
           NGVHW AWFI++ V+M
Sbjct: 799 NGVHWVAWFINAFVMM 814

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|405950989|gb|EKC18939.1| ATP-binding cassette sub-family A member 1 [Crassostrea gigas]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 73/147 (49%), Positives = 106/147 (72%), Gaps = 3/147 (2%)

Query: 68  DRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIED 127
           D+ Y   PR  P  + K++++GFAYLQDMVE +II+  TG +   G++++QFPYPCYI D
Sbjct: 501 DQVYKPGPRRTPGKETKFLSYGFAYLQDMVEHAIIKLQTGSDKDVGVMVEQFPYPCYIRD 560

Query: 128 QFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSI 187
            F  A+    PL +VL+W+   +M+CK+IVYEK++RLKE+MR+MGL NGVHW AWFI++ 
Sbjct: 561 SFTYAIEIVLPLLLVLAWILPVAMLCKNIVYEKEKRLKEVMRMMGLGNGVHWLAWFINAF 620

Query: 188 VVMIITAVLLSLLLVCIDFNKIVPYND 214
           VVM+ T   + LL+V + + K++ Y D
Sbjct: 621 VVMMFT---MGLLVVLLTYGKVIQYTD 644

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|395515458|ref|XP_003761921.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Sarcophilus harrisii]

 Score =  167 bits (423), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 109/151 (72%), Gaps = 3/151 (1%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D ++   PR+ P  DL+YI  GFAYLQD+VEQ+II+  TG E   GI +QQ PYPCY+
Sbjct: 570 IKDAYWDPGPRADPFEDLRYIWGGFAYLQDVVEQAIIRTLTGSEENTGIYVQQMPYPCYV 629

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct: 630 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWFSWFIS 689

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           S++ ++++A LL L+L       ++PY+D +
Sbjct: 690 SLIPLLVSAGLLVLIL---KLGNLLPYSDPS 717

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296190476|ref|XP_002806552.1| PREDICTED: LOW QUALITY PROTEIN: ATP-binding cassette sub-family A member 1 [Callithrix jacchus]

 Score =  167 bits (422), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 109/151 (72%), Gaps = 3/151 (1%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D ++   PR+ P  D++YI  GFAYLQD+VEQ II+  TG E   G+ +QQ PYPCY+
Sbjct: 569 IKDGYWDPGPRADPFEDMRYIWGGFAYLQDVVEQGIIRVLTGTEKKTGVYVQQMPYPCYV 628

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct: 629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWFSWFIS 688

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           S+V ++++A   SLL+V +    ++PY+D +
Sbjct: 689 SLVPLLVSA---SLLVVILKLGNLLPYSDPS 716

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|432095079|gb|ELK26467.1| ATP-binding cassette sub-family A member 1 [Myotis davidii]

 Score =  166 bits (421), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 110/151 (72%), Gaps = 3/151 (1%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct: 709 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQMPYPCYV 768

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct: 769 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWFSWFIS 828

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           S++ ++++A   SLL+V +    ++PY+D +
Sbjct: 829 SLIPLLVSA---SLLVVILKLGNLLPYSDPS 856

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149738947|ref|XP_001493840.1| PREDICTED: ATP-binding cassette sub-family A member 1 [Equus caballus]

 Score =  166 bits (420), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 70/151 (46%), Positives = 110/151 (72%), Gaps = 3/151 (1%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct: 569 IKDAYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQMPYPCYV 628

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct: 629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFIS 688

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYNDSA 216
           S++ ++++A    LL+V +    ++PY+D +
Sbjct: 689 SLIPLLVSA---GLLVVILKLGNLLPYSDPS 716

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
MGI|MGI:99607	2261	Abca1 "ATP-binding cassette, s	0.550	0.064	0.463	2.8e-36
RGD|631344	2201	Abca1 "ATP-binding cassette, s	0.550	0.066	0.463	3.5e-36
UNIPROTKB|F1LNL3	2258	Abca1 "Protein Abca1" [Rattus	0.550	0.064	0.463	3.6e-36
UNIPROTKB|F1LRX9	2258	Abca1 "Protein Abca1" [Rattus	0.550	0.064	0.463	3.6e-36
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.550	0.064	0.463	4.6e-36
UNIPROTKB|F1SP55	1293	ABCA1 "Uncharacterized protein	0.550	0.112	0.456	8.7e-36
UNIPROTKB|E1C619	2225	E1C619 "Uncharacterized protei	0.550	0.065	0.463	1.5e-35
UNIPROTKB|E1C2W8	2255	E1C2W8 "Uncharacterized protei	0.550	0.064	0.463	1.6e-35
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.550	0.064	0.456	2e-35
UNIPROTKB|E2QUX2	2262	ABCA1 "Uncharacterized protein	0.550	0.064	0.456	2.5e-35

MGI|MGI:99607 Abca1 "ATP-binding cassette, sub-family A (ABC1), member 1" [Mus musculus (taxid:10090)]

 Score = 407 (148.3 bits), Expect = 2.8e-36, P = 2.8e-36
 Identities = 69/149 (46%), Positives = 109/149 (73%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGSEKKTGVYVQQMPYPCYV 628

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLKE MR+MGL NG+ W +WF+ 
Sbjct:   629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFVS 688

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL+V +    ++PY+D
Sbjct:   689 SLIPLLVSA---GLLVVILKLGNLLPYSD 714

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO;IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006497 "protein lipidation" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008203 "cholesterol metabolic process" evidence=ISO;IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0009986 "cell surface" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0015914 "phospholipid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO;IMP;IDA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IDA;IMP

GO:0033700 "phospholipid efflux" evidence=ISO;IMP;IDA

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034364 "high-density lipoprotein particle" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=IMP

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISO;IMP

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IMP

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

GO:0071300 "cellular response to retinoic acid" evidence=IDA

RGD|631344 Abca1 "ATP-binding cassette, subfamily A (ABC1), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 69/149 (46%), Positives = 109/149 (73%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   509 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQMPYPCYV 568

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   569 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFIS 628

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL++ +    ++PY+D
Sbjct:   629 SLIPLLVSA---GLLVIILKLGDLLPYSD 654

GO:0002790 "peptide secretion" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006497 "protein lipidation" evidence=ISO

GO:0006911 "phagocytosis, engulfment" evidence=ISO

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0008509 "anion transmembrane transporter activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0015914 "phospholipid transport" evidence=IDA;TAS

GO:0016197 "endosomal transport" evidence=ISO

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=IMP;IDA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0034616 "response to laminar fluid shear stress" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=ISO

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042493 "response to drug" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IDA;TAS

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=ISO

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0071397 "cellular response to cholesterol" evidence=IEP

GO:0034364 "high-density lipoprotein particle" evidence=IDA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=ISO

UNIPROTKB|F1LNL3 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 3.6e-36, P = 3.6e-36
 Identities = 69/149 (46%), Positives = 109/149 (73%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQMPYPCYV 628

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFIS 688

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL++ +    ++PY+D
Sbjct:   689 SLIPLLVSA---GLLVIILKLGDLLPYSD 714

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LRX9 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 406 (148.0 bits), Expect = 3.6e-36, P = 3.6e-36
 Identities = 69/149 (46%), Positives = 109/149 (73%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYVQQMPYPCYV 628

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I KSIVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKSIVYEKEARLKETMRIMGLDNGILWFSWFIS 688

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL++ +    ++PY+D
Sbjct:   689 SLIPLLVSA---GLLVIILKLGDLLPYSD 714

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 405 (147.6 bits), Expect = 4.6e-36, P = 4.6e-36
 Identities = 69/149 (46%), Positives = 108/149 (72%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYMQQMPYPCYV 628

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWFSWFIS 688

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL+V +    ++PY+D
Sbjct:   689 SLIPLLVSA---GLLVVILKLGNLLPYSD 714

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1SP55 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 8.7e-36, P = 8.7e-36
 Identities = 68/149 (45%), Positives = 107/149 (71%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GF YLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   572 IKDGYWDPGPRADPFEDMRYVWGGFTYLQDVVEQAIIRVLTGVEKKTGVYMQQMPYPCYV 631

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   632 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWFSWFIS 691

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL+V +    ++PY+D
Sbjct:   692 SLIPLLVSA---GLLVVILKLGNLLPYSD 717

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E1C619 E1C619 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 400 (145.9 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 69/149 (46%), Positives = 107/149 (71%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GF YLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   572 IKDGYWDPGPRADPFEDMRYVWGGFTYLQDVVEQAIIRVQTGTEKKTGVYVQQMPYPCYV 631

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   632 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWLSWFIS 691

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A LL L+L       ++PY+D
Sbjct:   692 SLIPLLMSAGLLVLIL---KVRNLLPYSD 717

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1C2W8 E1C2W8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 400 (145.9 bits), Expect = 1.6e-35, P = 1.6e-35
 Identities = 69/149 (46%), Positives = 107/149 (71%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GF YLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   572 IKDGYWDPGPRADPFEDMRYVWGGFTYLQDVVEQAIIRVQTGTEKKTGVYVQQMPYPCYV 631

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL NG+ W +WFI 
Sbjct:   632 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWLSWFIS 691

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A LL L+L       ++PY+D
Sbjct:   692 SLIPLLMSAGLLVLIL---KVRNLLPYSD 717

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 2.0e-35, P = 2.0e-35
 Identities = 68/149 (45%), Positives = 107/149 (71%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   569 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTEKKTGVYMQQMPYPCYV 628

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL N + W +WFI 
Sbjct:   629 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNSILWFSWFIS 688

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL+V +    ++PY+D
Sbjct:   689 SLIPLLVSA---GLLVVILKLGNLLPYSD 714

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

UNIPROTKB|E2QUX2 ABCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 398 (145.2 bits), Expect = 2.5e-35, P = 2.5e-35
 Identities = 68/149 (45%), Positives = 108/149 (72%)

Query:    66 ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
             I D ++   PR+ P  D++Y+  GFAYLQD+VEQ+II+  TG E   G+ +QQ PYPCY+
Sbjct:   570 IKDGYWDPGPRADPFEDMRYVWGGFAYLQDVVEQAIIRVLTGTERKTGVYVQQMPYPCYV 629

Query:   126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
             +D F++ +S++ PLFM L+W+++ ++I K IVYEK+ RLKE MR+MGL +G+ W +WFI 
Sbjct:   630 DDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDSGILWFSWFIS 689

Query:   186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
             S++ ++++A    LL+V +    ++PY+D
Sbjct:   690 SLIPLLVSA---GLLVVILKLGNLLPYSD 715

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	265
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	4e-42
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	1e-05

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  153 bits (387), Expect = 4e-42
 Identities = 67/149 (44%), Positives = 100/149 (67%), Gaps = 3/149 (2%)

Query: 66  ISDRFYTLDPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYI 125
           I DR++   PR+ P+ D +YI  GFAYLQDMVEQ I +     E   GI LQQ PYPC++
Sbjct: 584 IKDRYWDSGPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQMPYPCFV 643

Query: 126 EDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFID 185
           +D F+  +++ FP+FMVL+W+++ SM  KSIV EK+ RLKE ++  G+SN V W  WF+D
Sbjct: 644 DDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLD 703

Query: 186 SIVVMIITAVLLSLLLVCIDFNKIVPYND 214
           S  +M ++  LL++ ++     +I+ Y+D
Sbjct: 704 SFSIMSMSIFLLTIFIM---HGRILHYSD 729

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 34/66 (51%)

Query: 137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVL 196
             L + L  +    +I  SIV EK+ R+KE + V G+S   +     +  ++V +I  ++
Sbjct: 98  LGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLI 157

Query: 197 LSLLLV 202
           + LLL 
Sbjct: 158 ILLLLF 163

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.21
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.97
KOG0059|consensus	885		98.89
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	95.76
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	95.58
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	95.36
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	94.91
TIGR01248	152	drrC daunorubicin resistance protein C. The model	94.26
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	93.05
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	92.71
COG0842	286	ABC-type multidrug transport system, permease comp	91.93
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	88.98
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	87.19
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	86.1
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	85.08
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	84.61
PLN03211	659	ABC transporter G-25; Provisional	83.76
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	80.99

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=3.1e-49  Score=422.54  Aligned_cols=239  Identities=32%  Similarity=0.570  Sum_probs=222.2

Q ss_pred             cccccccccch-------hhhhhhccCceEEEEEecCC----CCCCCcceEEEEecCCccCccccccCCccccccCCCCC
Q psy7369           5 AVQYDRLTDVT-------GNLTRMEQAFFTVLQFFCGN----TSARHTLEEYKNSQMFGAKLMSTALIGDTYISDRFYTL   73 (265)
Q Consensus         5 ~~~~~~~~~~~-------~~~~~~~~~~~~agVvF~~~----~~~p~~~~~YtIR~~~~~~~~~~~~~~T~~~~~~~~~~   73 (265)
                      ||++||++++.       +|++++++++++|||+|+++    +++|.+ ++|+||+|.+      ..++|++..+.+|.+
T Consensus       519 c~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~-v~y~IR~~~~------~~~~t~~~~~~~w~~  591 (2272)
T TIGR01257       519 CLVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPH-VKYKIRMDID------VVEKTNKIKDRYWDS  591 (2272)
T ss_pred             HeeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCc-eEEEEecCcc------ccCcchhhccccccC
Confidence            99999999887       79999999999999999872    457888 9999999988      457788877888999


Q ss_pred             CCCCCCCCCcchhhccHHHHHHHHHHHHHHHHhCCCCCcceeeeecCCCccchhHHHHHHhhhhhHHHHHHHHHHHHHHH
Q psy7369          74 DPRSRPLYDLKYITFGFAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMIC  153 (265)
Q Consensus        74 gp~~~~~~d~~Y~~~GFl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~~~f~~~~~~~~~~~~~l~~l~~v~~~v  153 (265)
                      ||+.++..|+.|+.+||++||++||++|++..++....+++++|+||||+|.+|.++..++..+|++++++|++++..++
T Consensus       592 g~~~~~~~~~~Y~~~GFl~lQ~ai~~aii~~~~~~~~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv  671 (2272)
T TIGR01257       592 GPRADPVEDFRYIWGGFAYLQDMVEQGITRSQMQAEPPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTV  671 (2272)
T ss_pred             CCCCCccccccHHHhhHHHHHHHHHHHHHHhhcCCCcccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987666789999999999999999999998776667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHH
Q psy7369         154 KSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWA  233 (265)
Q Consensus       154 ~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~  233 (265)
                      +.||.|||+|+||+||||||++++||+|||+.+++..++++++++++++.   +.+|++||++++|+++++|+++.+.||
T Consensus       672 ~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~---~~~~~~s~~~~lfl~~~~y~~s~I~~~  748 (2272)
T TIGR01257       672 KSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH---GRILHYSDPFILFLFLLAFSTATIMQC  748 (2272)
T ss_pred             HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CceeecCChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999888877   689999999999999999999999999


Q ss_pred             H---HhcCCCcccccccceEEEE
Q psy7369         234 L---INFTQPGYDKLKPTLTYSI  253 (265)
Q Consensus       234 ~---sfF~~~r~a~~~~~~~~~~  253 (265)
                      |   +||+|+|+|+++++++|++
T Consensus       749 fliS~fFska~~A~~~~~li~f~  771 (2272)
T TIGR01257       749 FLLSTFFSKASLAAACSGVIYFT  771 (2272)
T ss_pred             HHHHHHhCchHHHHHHHHHHHHH
Confidence            9   9999999999999999754

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.21  E-value=5.6e-12  Score=113.22  Aligned_cols=154  Identities=16%  Similarity=0.203  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHhCCC--------CCcceeeeecCCCccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369          91 AYLQDMVEQSIIQEHTGRE--------STPGIVLQQFPYPCYIEDQFIKAVSKTFPLFMVLSWVFACSMICKSIVYEKQE  162 (265)
Q Consensus        91 l~LQ~~Id~aii~~~~~~~--------~~~~v~~~~fP~p~~~~~~f~~~~~~~~~~~~~l~~l~~v~~~v~~IV~EKE~  162 (265)
                      ..+|+.+++ +.+......        ...++..+..|......    .......++++.+.++..+......+++|||+
T Consensus       114 ~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~  188 (344)
T PF12698_consen  114 QIIQNALSS-LLQQLNASSEGKSAIQSSNSPIPVESIPLSNPSS----SFASYLIPFILFFILLIGFSFIAMSIVEEKES  188 (344)
T ss_dssp             HHHHHHHHH-HHHHHHHCCCGCCCCHHHT--EEEEEEEECCCHH----HCHTT---------------------------
T ss_pred             hhhhccccc-cchhhhhhhhhhhhhccccccccccccccccccc----cccccccccchhHHHHHHHHhhchhhhhHhhh
Confidence            557777777 555433211        12334455544422221    22334556666666666666678899999999


Q ss_pred             hHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHHH---HhcCC
Q psy7369         163 RLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWAL---INFTQ  239 (265)
Q Consensus       163 ~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~~---sfF~~  239 (265)
                      |++|.|+++|++.+.+|++|++..++..++.++++.++ ..  +...++..++..+++++++++.+.+++++   ++|++
T Consensus       189 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~i-~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~  265 (344)
T PF12698_consen  189 GTRERLLSSGVSPWSYWLSKFLAYFLVSLIQSLIIIII-IF--GISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKN  265 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhHhhhcccCCHHHHHHHHHHHHhhHHHHHHHHHHHH-Hh--ccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999988777664 22  00135666888888888999999888877   89999


Q ss_pred             CcccccccceEEE
Q psy7369         240 PGYDKLKPTLTYS  252 (265)
Q Consensus       240 ~r~a~~~~~~~~~  252 (265)
                      ++.+..+.+++..
T Consensus       266 ~~~~~~~~~~~~~  278 (344)
T PF12698_consen  266 SSTAISVASIIIL  278 (344)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHHHH
Confidence            9888776665543

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.97  E-value=6.5e-09  Score=114.09  Aligned_cols=151  Identities=11%  Similarity=0.128  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHhCCCC-----CcceeeeecCCCccchhHH--H-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7369          92 YLQDMVEQSIIQEHTGRES-----TPGIVLQQFPYPCYIEDQF--I-KAVSKTFPLFMVLSWVFACSMICKSIVYEKQER  163 (265)
Q Consensus        92 ~LQ~~Id~aii~~~~~~~~-----~~~v~~~~fP~p~~~~~~f--~-~~~~~~~~~~~~l~~l~~v~~~v~~IV~EKE~~  163 (265)
                      ..-+.+++|+++...++..     .+.+.-.++|.+.......  . ......+++++++++.+..+.++..+|.|||.|
T Consensus      1629 ~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER~sk 1708 (2272)
T TIGR01257      1629 SFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQERVNK 1708 (2272)
T ss_pred             HHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHHhhh
Confidence            4568899999987644321     2334445666554332111  1 122334577788888888899999999999999


Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cceeecCChhHHHHHHHHHHHHHHHHHH---HhcCC
Q psy7369         164 LKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDF-NKIVPYNDSATAENDAFLRMDNNTLWAL---INFTQ  239 (265)
Q Consensus       164 lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~-~~vf~~s~~~vlf~~~~l~~~~~~~~~~---sfF~~  239 (265)
                      .|.++.++|++..+||+|.|++-++.++++++++.+++.. ++ ..+....++..+++++++||++.+.++.   -+|++
T Consensus      1709 aK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~-f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF~~ 1787 (2272)
T TIGR01257      1709 AKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIG-FQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLFDV 1787 (2272)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999999999999999999999999998888777654 22 1233446777889999999999999877   55666


Q ss_pred             Cccc
Q psy7369         240 PGYD  243 (265)
Q Consensus       240 ~r~a  243 (265)
                      +..|
T Consensus      1788 ~~~A 1791 (2272)
T TIGR01257      1788 PSTA 1791 (2272)
T ss_pred             chhH
Confidence            6655

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059|consensus

Probab=98.89  E-value=5.1e-08  Score=100.77  Aligned_cols=154  Identities=13%  Similarity=0.210  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCcceeeeecCCCccchhHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy7369          90 FAYLQDMVEQSIIQEHTGRESTPGIVLQQFPYPCYIEDQFIKA-VSKTFPLFMVLSWVFACSMICKSIVYEKQERLKEMM  168 (265)
Q Consensus        90 Fl~LQ~~Id~aii~~~~~~~~~~~v~~~~fP~p~~~~~~f~~~-~~~~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~m  168 (265)
                      +-.+....++++.+...+..    +..+.-|.|.......... .....++++.+.+.+.....+...+.||+.|.|..|
T Consensus       256 ~~~~~~~~~n~l~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~  331 (885)
T KOG0059|consen  256 LPFLLGLGSNALRRALNLSG----ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQ  331 (885)
T ss_pred             HHHhcchHHHHHHHhhcccc----ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHH
Confidence            44558888888887665443    4444334444333322222 345667788888888888899999999999999999


Q ss_pred             hhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHHH---HhcCCCccccc
Q psy7369         169 RVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWAL---INFTQPGYDKL  245 (265)
Q Consensus       169 kiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~~---sfF~~~r~a~~  245 (265)
                      +++|+++++||++|+++-.+.+++..+++.+++..   +..+...+..++++++++|+.+.+.+.+   .+|+++..+..
T Consensus       332 ~i~G~~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~---f~~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v  408 (885)
T KOG0059|consen  332 LIAGLSPSTYWLFALVWDLLLYLLILLILLIFVLI---FGFFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASV  408 (885)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhe---eecccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcee
Confidence            99999999999999999999999998888777765   3357777888999999999999888877   88999998887


Q ss_pred             ccceE
Q psy7369         246 KPTLT  250 (265)
Q Consensus       246 ~~~~~  250 (265)
                      ...+.
T Consensus       409 ~~~i~  413 (885)
T KOG0059|consen  409 ILSIY  413 (885)
T ss_pred             ehhhH
Confidence            75544

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=95.76  E-value=0.1  Score=45.30  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLV  202 (265)
Q Consensus       137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~  202 (265)
                      .|-.+..+.+.........+..|||++.-+-+.....+.+.++++..+...+..++..+++.++..
T Consensus        51 ~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~  116 (236)
T TIGR01247        51 VPGIVAMTVFNMSFFSGISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSF  116 (236)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344344433333333456788999999888888889999999999999998888877666555543

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=95.58  E-value=0.17  Score=44.70  Aligned_cols=44  Identities=14%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHH
Q psy7369         152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAV  195 (265)
Q Consensus       152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~i  195 (265)
                      ..+.+++|||+|--|.+....++.+...++-++...+..++..+
T Consensus        69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~  112 (240)
T TIGR03518        69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALL  112 (240)
T ss_pred             HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999988877665443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=95.36  E-value=0.52  Score=40.84  Aligned_cols=62  Identities=6%  Similarity=0.001  Sum_probs=46.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS  198 (265)
Q Consensus       137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~  198 (265)
                      .|...+...+.........+++|||+|.-|-++.+.++.+.+.++..+...+..++..++..
T Consensus        40 ~~~~~~~~~~~~~~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~  101 (232)
T TIGR00025        40 PVLMALAAISTAFTGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILL  101 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555666778899999999999999999999999999997776666555544433

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=94.91  E-value=0.4  Score=45.73  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=50.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         137 FPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL  201 (265)
Q Consensus       137 ~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil  201 (265)
                      .++++++.+++........++.|||+|.-|.+-.+.++...+..+-.+...++.+....+..+.+
T Consensus       191 ~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~  255 (407)
T COG1668         191 IFLLFFIPLSYAGQMVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLAL  255 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555889999999999999999999999999999999988877776644444333

>TIGR01248 drrC daunorubicin resistance protein C

Probab=94.26  E-value=1.1  Score=36.61  Aligned_cols=50  Identities=14%  Similarity=0.181  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL  201 (265)
Q Consensus       152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil  201 (265)
                      .-..++.|||+|.-|-++..-++.+.+.++..+...+..++..+++.++.
T Consensus         8 ~~~~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~   57 (152)
T TIGR01248         8 NAIDITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIA   57 (152)
T ss_pred             HHHHHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44578999999999999999999999999999999888888776665554

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=93.05  E-value=2.2  Score=37.45  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         136 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL  201 (265)
Q Consensus       136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil  201 (265)
                      ..|-++.++.+.........++.|||++.-+.++.+.++...+.++..+...+..++..+++.++.
T Consensus        62 l~pGi~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~  127 (253)
T TIGR03861        62 IVPGLCCMILLFNGMQSSLSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIA  127 (253)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444333445678999999999999999999999999999999888888765544443

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=92.71  E-value=2.9  Score=36.87  Aligned_cols=98  Identities=8%  Similarity=-0.090  Sum_probs=58.3

Q ss_pred             hhhhhHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceee
Q psy7369         134 SKTFPLFMVLSWVFAC--SMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVP  211 (265)
Q Consensus       134 ~~~~~~~~~l~~l~~v--~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~  211 (265)
                      +...|-++.++.+...  ......+.+|||+|.-|.+...-++...+-++..+...+..++..+++.++...   ....+
T Consensus        58 ~f~~pg~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~---~g~~~  134 (253)
T TIGR01291        58 AFLAAGMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTAT---LGYIE  134 (253)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhch
Confidence            3445555555444332  222346789999999999999999999999999988777666655544433322   12223


Q ss_pred             cCChhHHHHHHHHHHHHHHHHHH
Q psy7369         212 YNDSATAENDAFLRMDNNTLWAL  234 (265)
Q Consensus       212 ~s~~~vlf~~~~l~~~~~~~~~~  234 (265)
                      ..++..++...++++.+...+++
T Consensus       135 ~~~~l~~~~~~ll~~l~~~~lg~  157 (253)
T TIGR01291       135 WWSLIYILPVIALTGLAFASLSM  157 (253)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHH
Confidence            33343333444445544444443

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=91.93  E-value=3.6  Score=35.50  Aligned_cols=97  Identities=14%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             hhhHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCC
Q psy7369         136 TFPLFMVLSWVFA-CSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYND  214 (265)
Q Consensus       136 ~~~~~~~l~~l~~-v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~  214 (265)
                      ..|-.+.+..++. .......+.+|||.+..|.+..+.++...+.++..+...+...+...++.++.....  ++-...+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--g~~~~~~  167 (286)
T COG0842          90 IVPGVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLL--GVPFLGS  167 (286)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCc
Confidence            3344333443333 333334444469999999999999996665665555555555444444444433311  2223344


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q psy7369         215 SATAENDAFLRMDNNTLWAL  234 (265)
Q Consensus       215 ~~vlf~~~~l~~~~~~~~~~  234 (265)
                      +........++....+.+++
T Consensus       168 ~~~~~~~~~~~~~~~~~lg~  187 (286)
T COG0842         168 LLLLLLLLLLLLLATVALGL  187 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444433333

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=88.98  E-value=1.8  Score=37.87  Aligned_cols=43  Identities=16%  Similarity=0.148  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHH
Q psy7369         148 ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVM  190 (265)
Q Consensus       148 ~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~  190 (265)
                      ....-...+..|||+|--|.+-...++.+.+.++-++...+..
T Consensus        82 ~~~l~~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~  124 (277)
T PF12679_consen   82 AIILASDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFS  124 (277)
T ss_pred             HHHHHHHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            4445677899999999999999999999999999999887773

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=87.19  E-value=8.2  Score=32.55  Aligned_cols=96  Identities=13%  Similarity=0.024  Sum_probs=56.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCCh
Q psy7369         136 TFPLFMVLSWVFACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDS  215 (265)
Q Consensus       136 ~~~~~~~l~~l~~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~  215 (265)
                      +.|.++.++..+ .......+..+||.|.    +....+.+.++++-.+...+..++.++++.++.....  ++ +..++
T Consensus        25 ~~p~~~~~~l~~-ga~~~~~~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~--g~-~~~~~   96 (208)
T TIGR03062        25 LAPYFLSLALFV-GALVLNMIIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGL--GL-DPAHP   96 (208)
T ss_pred             hHHHHHHHHHHH-HHHHHHHHhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CC-ccCCH
Confidence            456665555332 3333444556666544    3566888889999999988888887777666554311  11 22355


Q ss_pred             hHHHHHHHHHHHHHHHHHH---HhcCC
Q psy7369         216 ATAENDAFLRMDNNTLWAL---INFTQ  239 (265)
Q Consensus       216 ~vlf~~~~l~~~~~~~~~~---sfF~~  239 (265)
                      ..+++..++.+.+..+.+.   +.+++
T Consensus        97 ~~~~l~~~l~~~~~~~lg~~l~~~~~~  123 (208)
T TIGR03062        97 PATFGFAILTSLTFMAIIQFLVALFGN  123 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            5555555666666555444   55543

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=86.10  E-value=7.5  Score=39.03  Aligned_cols=95  Identities=15%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHHhHHHHhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC--ChhHHHHHHHHHHH
Q psy7369         151 MICKSIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN--DSATAENDAFLRMD  227 (265)
Q Consensus       151 ~~v~~IV~EKE~~lkE~mkiMGL-~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s--~~~vlf~~~~l~~~  227 (265)
                      ..+..+..||..=.||.-  .|+ +..+|++|..+..+...++..++.+++..+-   .=++.+  .+...++..++..+
T Consensus       410 ~~~~~f~~er~v~~rE~~--~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~---~gl~~~~~~f~~f~l~~~l~~~  484 (617)
T TIGR00955       410 PVINVFTAELPVFLRETR--SGLYRVSAYFLAKTIAELPLFIILPALFTSITYWM---IGLRSGATHFLTFLFLVTLVAN  484 (617)
T ss_pred             HHHHHHHHHHHHHHHhhc--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhee---ccCCccHHHHHHHHHHHHHHHH
Confidence            345567788887777764  454 7789999999999888888777777776551   112222  11221222222333


Q ss_pred             HHHHHHH---HhcCCCcccccccceE
Q psy7369         228 NNTLWAL---INFTQPGYDKLKPTLT  250 (265)
Q Consensus       228 ~~~~~~~---sfF~~~r~a~~~~~~~  250 (265)
                      +..+++.   +++.+...|..+++++
T Consensus       485 ~~~s~~~~i~~~~~~~~~a~~~~~~~  510 (617)
T TIGR00955       485 VATSFGYLISCAFSSTSMALTVGPPF  510 (617)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            3333333   7778888888877765

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=85.08  E-value=12  Score=30.58  Aligned_cols=47  Identities=11%  Similarity=0.105  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         152 ICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLS  198 (265)
Q Consensus       152 ~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~  198 (265)
                      ....+.+|+|+|.-+.+...+.+...++.+-++...+..++..++..
T Consensus        66 ~~~~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~  112 (232)
T PF12730_consen   66 AALLFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISF  112 (232)
T ss_pred             HHHHHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567899999999999999999999999999988887777666543

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=84.61  E-value=10  Score=32.77  Aligned_cols=54  Identities=7%  Similarity=0.156  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7369         148 ACSMICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLL  201 (265)
Q Consensus       148 ~v~~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil  201 (265)
                      ....+-|...+|+|+|--|.+++-+.+..+.+++-.+...+...+..++...+.
T Consensus        60 ~~l~~~r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~  113 (215)
T PF03379_consen   60 SLLGLNRSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLF  113 (215)
T ss_pred             HHHHhhHhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344456789999999999999999999999999999988888877666555444

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>PLN03211 ABC transporter G-25; Provisional

Probab=83.76  E-value=6.9  Score=39.72  Aligned_cols=96  Identities=9%  Similarity=-0.071  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhHHHHhhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecC--ChhHHHHHHHHHHHH
Q psy7369         151 MICKSIVYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYN--DSATAENDAFLRMDN  228 (265)
Q Consensus       151 ~~v~~IV~EKE~~lkE~mkiMGL~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s--~~~vlf~~~~l~~~~  228 (265)
                      ..+.....||.-=.||.-.-| .+..+|++|+.+.-+-..++.+++++++.++-   .=++.+  .+...++..++..++
T Consensus       456 ~~~~~f~~er~v~~rE~~~~~-Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m---~Gl~~~~~~F~~f~li~~l~~~~  531 (659)
T PLN03211        456 NSVFVFPQERAIFVKERASGM-YTLSSYFMARIVGDLPMELILPTIFLTVTYWM---AGLKPELGAFLLTLLVLLGYVLV  531 (659)
T ss_pred             HHHHHHHHhhHHHHHhhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHhheeEc---CCCcCCHHHHHHHHHHHHHHHHH
Confidence            455667889998889985444 57799999999999888888888877776651   112322  223333333444555


Q ss_pred             HHHHHH---HhcCCCcccccccceE
Q psy7369         229 NTLWAL---INFTQPGYDKLKPTLT  250 (265)
Q Consensus       229 ~~~~~~---sfF~~~r~a~~~~~~~  250 (265)
                      ..+++.   +.+.+...|..+++++
T Consensus       532 ~~s~g~~i~a~~~~~~~a~~~~~~~  556 (659)
T PLN03211        532 SQGLGLALGAAIMDAKKASTIVTVT  556 (659)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            555544   7778888888777765

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=80.99  E-value=0.11  Score=43.33  Aligned_cols=93  Identities=14%  Similarity=0.080  Sum_probs=61.1

Q ss_pred             HHHHHHHHhHHHHhhhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceeecCChhHHHHHHHHHHHHHHHHH
Q psy7369         155 SIVYEKQERLKEMMRVMGL-SNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFNKIVPYNDSATAENDAFLRMDNNTLWA  233 (265)
Q Consensus       155 ~IV~EKE~~lkE~mkiMGL-~~~~~wlSW~l~~~i~~li~~ii~~iil~~~~~~~vf~~s~~~vlf~~~~l~~~~~~~~~  233 (265)
                      ....|||++.-+..+..|+ +...+.++..+..++..++..+++.++.....  ++ +..++...++..++..+.....+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~~~~~~g  148 (210)
T PF01061_consen   72 SISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLF--GL-DFESFFLFLLILLLSILCSSGLG  148 (210)
T ss_pred             hhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhh--cc-ccccchheecccccccccccccc
Confidence            3788999999999999999 99999999999998888887777766554411  11 11133333333334333333333


Q ss_pred             H---HhcCCCcccccccceE
Q psy7369         234 L---INFTQPGYDKLKPTLT  250 (265)
Q Consensus       234 ~---sfF~~~r~a~~~~~~~  250 (265)
                      .   +++.+.+.+....+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~  168 (210)
T PF01061_consen  149 LLLAALFPSFRDASAISSLI  168 (210)
T ss_pred             cccccchhhhhhhhhhhhhc
Confidence            3   6666777777666655

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 50/286 (17%), Positives = 94/286 (32%), Gaps = 76/286 (26%)

Query: 7   QYDRL-TDVT----GNLTRMEQAFFTVLQFFCGNTSARHTLEEYKNSQ------MFGA-K 54
           Q DRL  D       N++R++   +  L         R  L E + ++      + G+ K
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQP--YLKL---------RQALLELRPAKNVLIDGVLGSGK 163

Query: 55  LMSTALIGDTYISDRFYTLDPRSRPLYDLKYITFG--------FAYLQDMVEQSIIQEHT 106
              T +  D  +S +          ++   ++              LQ ++ Q I    T
Sbjct: 164 ---TWVALDVCLSYKV--QCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQ-IDPNWT 214

Query: 107 GRESTPGIVLQQFPYPCYIEDQFIKA--VSKTFP--LFMVL-----SWVF-ACSMICKSI 156
            R               +     ++    SK +   L +VL     +  + A ++ CK +
Sbjct: 215 SRSDHS----SNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKIL 269

Query: 157 VYEKQERLKEMMRVMGLSNGVHWTAWFIDSIVVMIITAVLLSLLLVCIDFN--------- 207
           +     R K++   +  +   H +   +D   + +    + SLLL  +D           
Sbjct: 270 L---TTRFKQVTDFLSAATTTHIS---LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 208 KIVPYNDSATAENDAFLRMDNNTLWALINFTQPGYDKLKPTLTYSI 253
              P   S  A     +R D    W   N+     DKL   +  S+
Sbjct: 324 TTNPRRLSIIA---ESIR-DGLATW--DNWKHVNCDKLTTIIESSL 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00