Psyllid ID: psy7393

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
Protein Sequence
MGSSNDEPIEDEEEEGARINFVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTGHVCKRNDSSITQSRSFSIPGAVPIPQIYTMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLVDEPGDTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLLRNEEQV
Secondary Structure (PSIPRED)
cccccccccccHHHHccccHHHHHHHHHHHccEEEEcccccccccccccccccEEEccccccccccccEEEEEEccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHcccEEccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHcccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccHHHcccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHccHEHHHHHHHHHHHHHHHHHcccHHHccccccccccccEcccccccccccccEHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcHHHHccccEEHHHHHHHccHHHHHHccccccHHHHHHHHccccccccccccEEEcccccEEEcccccccccccHHHHccccccccccccccccccHHHHHcccccHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHcHHHHHHcccEEEccccccccccHHHccccccccccEEEEcccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcccHHHHHHHcHHHHHHHHcccEEEcccccccccccHcccHHHcccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcHHcc
Coil and Loop (DISEMBL)
mgssndepiedeeeegARINFVALKRAVLRSRVEMMKGSfflgafstdaagqldvlghdghslgvdgAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATdlteshragTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLAsgllrtghvckrndssitqsrsfsipgavpipqiytmsgrgkggkakaksktrssraglqfpvgrIHRLLRkgnyaervgagAPVYLAAVMEYLAAEVLELAGnaardnkktriiPRHLQLAIRNDEELNKLLSgvtiaqggvlpniqaGLKAEFSITISLFsfvfdneavpiqqnytmsgrgkggktktksktrssraglqfpvgrIHRLLRkgnyaervgagAPVYLAAVMEYLAAEVLELAGNaardnkkthsWWCLTAETVQGAAltfervddvhggdglslgvlgvgdgVADHVLEEHLENatgllvdepgdtldststrqttdgglgdsldvvteyfpvplgtsfseslsslttAGHDELVLLLLLLRNEEQV
Flexible Loop (DISEMBL)
mgssndepiedeeeegarinfvALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTGHVCkrndssitqsrsfsipgavpipqiytmsgrgkggkakaksktrssraglqfpvgrihrllrkgnyaerVGAGAPVYLAAVMEYLAAEVLELAGnaardnkktriiPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQqnytmsgrgkggktktksktrssraglqfpvgrihrllrkgnyaerVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAtgllvdepgdtLDSTStrqttdgglgdsLDVVTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLLRNEEQV
Low Complexity Region (SEG)
MGSSNdepiedeeeeGARINFVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVgllhaaggrralagclrrqllPrglasgrlasgllrTGHVCKRNDSSITQSRSFSIPGAVPIPQIYTMsgrgkggkakaksktrssragLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMsgrgkggktktksktrssrAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERvddvhggdglslgvlgvgdgvadhvlEEHLENATGLLVDEPGDTLDSTSTRQTTDGGLGDSLDVVTEYFPVPlgtsfseslsslttAGHDElvllllllRNEEQV
Disordered region (IsUnstruct)
******************INFVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTGHVCK****************AVPIPQIY***********************LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQN************************LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLV********************GDSLDVVTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLL******
Disordered Region (DISOPRED)
********************FVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLV***************GLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTG****************************************************QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKA****************AVPI**************************GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADH****************************************VTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLLRN****
Disordered Region (DISEMBL)
**************EGARINFVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTGHVCKRNDSSITQSRSFSIPGAVPIPQIYTMS*******************GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMS******************AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLVDEPGDTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLLRNEEQV
Disordered Region (DISPRO)
*********EDE*EEGARINFVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTGHVCKRNDSSITQSRS***********************************GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNE******************************GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLE**T************************GDSLDVVTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLLRNE***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSSNDEPIEDEEEEGARINFVALKRAVLRSRVEMMKGSFFLGAFSTDAAGQLDVLGHDGHSLGVDGAQVRVLEQTHQVGLASLLQGHHGRALEAQVGLEVLGDLTHQTLERQLADQQLGALLVATDLTESHRAGTVTVGLLHAAGGRRALAGCLRRQLLPRGLASGRLASGLLRTGHVCKRNDSSITQSRSFSIPGAVPIPQIYTMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGLLVDEPGDTLDSTSTRQTTDGGLGDSLDVVTEYFPVPLGTSFSESLSSLTTAGHDELVLLLLLLRNEEQV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	549	2.2.26 [Sep-21-2011]
P02269	125	Histone H2A OS=Asterias r	N/A	N/A	0.209	0.92	0.930	8e-56
P02264	128	Histone H2A OS=Oncorhynch	N/A	N/A	0.209	0.898	0.913	3e-54
Q96QV6	131	Histone H2A type 1-A OS=H	yes	N/A	0.209	0.877	0.913	4e-54
Q7ZUY3	142	Histone H2A.x OS=Danio re	no	N/A	0.209	0.809	0.913	4e-54
P16886	126	Late histone H2A.L3 OS=St	yes	N/A	0.209	0.912	0.896	6e-54
Q8IUE6	130	Histone H2A type 2-B OS=H	yes	N/A	0.209	0.884	0.905	1e-53
Q99878	128	Histone H2A type 1-J OS=H	yes	N/A	0.209	0.898	0.913	1e-53
P27661	143	Histone H2A.x OS=Mus musc	yes	N/A	0.256	0.986	0.769	1e-53
P06897	130	Histone H2A type 1 OS=Xen	N/A	N/A	0.209	0.884	0.896	1e-53
Q96KK5	128	Histone H2A type 1-H OS=H	yes	N/A	0.209	0.898	0.913	1e-53

>sp|P02269|H2A_ASTRU Histone H2A OS=Asterias rubens PE=1 SV=2

 Score =  218 bits (556), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 107/115 (93%), Positives = 112/115 (97%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGKA+AK+K+RSSRAGLQFPVGR+HR LRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGKGGKARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           E+LELAGNAARDNKKTRI PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Asterias rubens (taxid: 7604)

>sp|P02264|H2A_ONCMY Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2

 Score =  213 bits (543), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 106/116 (91%), Positives = 112/116 (96%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVL 116

The secreted form has antibacterial activity against Gram-positive bacteria and antifungal activity against S.cerevisiae.

Oncorhynchus mykiss (taxid: 8022)

>sp|Q96QV6|H2A1A_HUMAN Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/116 (91%), Positives = 112/116 (96%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AKSK+RSSRAGLQFPVGRIHRLLRKGNYAER+GAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNA+RDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVL 116

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Homo sapiens (taxid: 9606)

>sp|Q7ZUY3|H2AX_DANRE Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3

 Score =  213 bits (541), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 106/116 (91%), Positives = 112/116 (96%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKTGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVL 116

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low doses of ionizing radiation and for efficient repair of DNA double strand breaks (DSBs) specifically when modified by C-terminal phosphorylation.

Danio rerio (taxid: 7955)

>sp|P16886|H2AL_STRPU Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2

 Score =  212 bits (540), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 104/116 (89%), Positives = 113/116 (97%), Gaps = 1/116 (0%)

Query: 207 MSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGKG GKA+AK+K+RS+RAGLQFPVGR+HR LRKGNYA+RVGAGAPVYLAAV+EYLA
Sbjct: 1   MSGRGKGAGKARAKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLA 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVL 116

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Strongylocentrotus purpuratus (taxid: 7668)

>sp|Q8IUE6|H2A2B_HUMAN Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/116 (90%), Positives = 112/116 (96%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVL 116

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Homo sapiens (taxid: 9606)

>sp|Q99878|H2A1J_HUMAN Histone H2A type 1-J OS=Homo sapiens GN=HIST1H2AJ PE=1 SV=3

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/116 (91%), Positives = 111/116 (95%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 116

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Homo sapiens (taxid: 9606)

>sp|P27661|H2AX_MOUSE Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 110/143 (76%), Positives = 121/143 (84%), Gaps = 2/143 (1%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+K+RSSRAGLQFPVGR+HRLLRKG+YAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAG-LKAE 324
           AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA  L  +
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 325 FSITISLFSFVFDNEAVPIQQNY 347
            S T+   +     +A    Q Y
Sbjct: 121 SSATVGPKAPAVGKKASQASQEY 143

Variant histone H2A which replaces conventional H2A in a subset of nucleosomes. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. Required for checkpoint-mediated arrest of cell cycle progression in response to low doses of ionizing radiation and for efficient repair of DNA double strand breaks (DSBs) specifically when modified by C-terminal phosphorylation.

Mus musculus (taxid: 10090)

>sp|P06897|H2A1_XENLA Histone H2A type 1 OS=Xenopus laevis PE=1 SV=2

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 104/116 (89%), Positives = 111/116 (95%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGK +AK+KTRSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLL GVTIAQGGVLPNIQ+ L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQSVL 116

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Xenopus laevis (taxid: 8355)

>sp|Q96KK5|H2A1H_HUMAN Histone H2A type 1-H OS=Homo sapiens GN=HIST1H2AH PE=1 SV=3

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/116 (91%), Positives = 111/116 (95%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 116

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
157137737	124	histone h2a [Aedes aegypti] gi|108880814	0.209	0.927	0.956	7e-55
405975240	133	Histone H2A [Crassostrea gigas]	0.209	0.864	0.947	9e-55
162319741	123	histone H2A [Penaeus monodon]	0.209	0.934	0.956	1e-54
395736870	612	PREDICTED: uncharacterized protein LOC10	0.227	0.204	0.849	5e-54
122044770	125	RecName: Full=Histone H2A	0.209	0.92	0.930	5e-54
358255301	215	histone H2A [Clonorchis sinensis]	0.214	0.548	0.900	6e-54
195371155	124	GM13182 [Drosophila sechellia] gi|194122	0.209	0.927	0.939	7e-54
256087701	125	histone H2A [Schistosoma mansoni] gi|353	0.209	0.92	0.930	1e-53
195562366	124	GD12842 [Drosophila simulans] gi|1942026	0.209	0.927	0.939	1e-53
196012824	137	conserved hypothetical protein [Trichopl	0.209	0.839	0.904	2e-53

>gi|157137737|ref|XP_001657157.1| histone h2a [Aedes aegypti] gi|108880814|gb|EAT45039.1| AAEL003669-PA [Aedes aegypti]

 Score =  221 bits (563), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 110/115 (95%), Positives = 112/115 (97%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGK +AK+KTRSSRAGLQFPVGR HRLLRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGKGGKVRAKAKTRSSRAGLQFPVGRTHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405975240|gb|EKC39821.1| Histone H2A [Crassostrea gigas]

 Score =  221 bits (562), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 109/115 (94%), Positives = 113/115 (98%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGK K+K+K+RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAV+EYLAA
Sbjct: 1   MSGRGKGGKTKSKAKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVLEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|162319741|gb|ABX84387.1| histone H2A [Penaeus monodon]

 Score =  220 bits (561), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 110/115 (95%), Positives = 111/115 (96%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRG GGK K KSK+RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGNGGKVKGKSKSRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395736870|ref|XP_002816564.2| PREDICTED: uncharacterized protein LOC100439702 [Pongo abelii]

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/126 (84%), Positives = 117/126 (92%), Gaps = 1/126 (0%)

Query: 197 GAVPIPQIYTMSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPV 255
           G + +P+ + MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNY+ERVGAGAPV
Sbjct: 170 GCLDLPRDFKMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPV 229

Query: 256 YLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLP 315
           YLAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  VTIAQGGVLP
Sbjct: 230 YLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLP 289

Query: 316 NIQAGL 321
           NIQA L
Sbjct: 290 NIQAVL 295

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|122044770|sp|P02269.2|H2A_ASTRU RecName: Full=Histone H2A

 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 107/115 (93%), Positives = 112/115 (97%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGKA+AK+K+RSSRAGLQFPVGR+HR LRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGKGGKARAKAKSRSSRAGLQFPVGRVHRFLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           E+LELAGNAARDNKKTRI PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EILELAGNAARDNKKTRINPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Asterias rubens

Species: Asterias rubens

Genus: Asterias

Family: Asteriidae

Order: Forcipulatida

Class: Asteroidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|358255301|dbj|GAA57014.1| histone H2A [Clonorchis sinensis]

 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 109/121 (90%), Positives = 116/121 (95%), Gaps = 3/121 (2%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGK++AK+KTRS+RAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYLAA
Sbjct: 91  MSGRGKGGKSRAKAKTRSARAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLAA 150

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL---KA 323
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQ+ L   KA
Sbjct: 151 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQSVLLPKKA 210

Query: 324 E 324
           E
Sbjct: 211 E 211

Source: Clonorchis sinensis

Species: Clonorchis sinensis

Genus: Clonorchis

Family: Opisthorchiidae

Order: Opisthorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|195371155|ref|XP_002045914.1| GM13182 [Drosophila sechellia] gi|194122083|gb|EDW44126.1| GM13182 [Drosophila sechellia]

 Score =  218 bits (555), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 108/115 (93%), Positives = 111/115 (96%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGK GK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGKSGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|256087701|ref|XP_002580003.1| histone H2A [Schistosoma mansoni] gi|353231318|emb|CCD77736.1| putative histone H2A [Schistosoma mansoni]

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/115 (93%), Positives = 113/115 (98%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGK++AK+KTRS+RAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYLAA
Sbjct: 1   MSGRGKGGKSRAKAKTRSARAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL GVTIAQGGVLPNIQA L
Sbjct: 61  EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVL 115

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|195562366|ref|XP_002077504.1| GD12842 [Drosophila simulans] gi|194202619|gb|EDX16195.1| GD12842 [Drosophila simulans]

 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/115 (93%), Positives = 111/115 (96%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGK GK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGKDGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|196012824|ref|XP_002116274.1| conserved hypothetical protein [Trichoplax adhaerens] gi|190581229|gb|EDV21307.1| conserved hypothetical protein [Trichoplax adhaerens]

 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 104/115 (90%), Positives = 112/115 (97%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MSGRGKGGKA+ K+K+RS+RAGLQFPVGR+HR+LRKGNYAERVGAGAPVYLAAVMEYLAA
Sbjct: 1   MSGRGKGGKARNKAKSRSTRAGLQFPVGRVHRMLRKGNYAERVGAGAPVYLAAVMEYLAA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           E+LELAGNAARDNKK RI+PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  EILELAGNAARDNKKQRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	549
FB|FBgn0051618	124	His2A:CG31618 "His2A:CG31618"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053808	124	His2A:CG33808 "His2A:CG33808"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053814	124	His2A:CG33814 "His2A:CG33814"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053817	124	His2A:CG33817 "His2A:CG33817"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053820	124	His2A:CG33820 "His2A:CG33820"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053823	124	His2A:CG33823 "His2A:CG33823"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053826	124	His2A:CG33826 "His2A:CG33826"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053829	124	His2A:CG33829 "His2A:CG33829"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053832	124	His2A:CG33832 "His2A:CG33832"	0.169	0.75	0.989	7.3e-43
FB|FBgn0053835	124	His2A:CG33835 "His2A:CG33835"	0.169	0.75	0.989	7.3e-43

FB|FBgn0051618 His2A:CG31618 "His2A:CG31618" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0000786 "nucleosome" evidence=ISS

GO:0006334 "nucleosome assembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0051298 "centrosome duplication" evidence=IMP

FB|FBgn0053808 His2A:CG33808 "His2A:CG33808" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053814 His2A:CG33814 "His2A:CG33814" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053817 His2A:CG33817 "His2A:CG33817" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053820 His2A:CG33820 "His2A:CG33820" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053823 His2A:CG33823 "His2A:CG33823" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053826 His2A:CG33826 "His2A:CG33826" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053829 His2A:CG33829 "His2A:CG33829" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053832 His2A:CG33832 "His2A:CG33832" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053835 His2A:CG33835 "His2A:CG33835" [Drosophila melanogaster (taxid:7227)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 92/93 (98%), Positives = 92/93 (98%)

Query:   229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
             LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct:    23 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 82

Query:   289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
             LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct:    83 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 115

GO:0005634 "nucleus" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96KK5	H2A1H_HUMAN	No assigned EC number	0.9137	0.2094	0.8984	yes	N/A
Q93077	H2A1C_HUMAN	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
Q3ZBX9	H2AJ_BOVIN	No assigned EC number	0.8965	0.2094	0.8914	yes	N/A
P20671	H2A1D_HUMAN	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
P16886	H2AL_STRPU	No assigned EC number	0.8965	0.2094	0.9126	yes	N/A
P35062	H2A3_CHICK	No assigned EC number	0.8965	0.2094	0.8914	yes	N/A
P70082	H2AJ_CHICK	No assigned EC number	0.8879	0.2094	0.8914	yes	N/A
P0C169	H2A1C_RAT	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
P22752	H2A1_MOUSE	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
Q8CGP6	H2A1H_MOUSE	No assigned EC number	0.9051	0.2094	0.8984	no	N/A
P13912	H2A_CAIMO	No assigned EC number	0.9051	0.2094	0.8914	N/A	N/A
A1A4R1	H2A2C_BOVIN	No assigned EC number	0.8965	0.2094	0.8914	yes	N/A
Q8IUE6	H2A2B_HUMAN	No assigned EC number	0.9051	0.2094	0.8846	yes	N/A
Q96QV6	H2A1A_HUMAN	No assigned EC number	0.9137	0.2094	0.8778	yes	N/A
P27661	H2AX_MOUSE	No assigned EC number	0.7692	0.2568	0.9860	yes	N/A
Q99878	H2A1J_HUMAN	No assigned EC number	0.9137	0.2094	0.8984	yes	N/A
P0C0S8	H2A1_HUMAN	No assigned EC number	0.9137	0.2094	0.8846	no	N/A
P0C0S9	H2A1_BOVIN	No assigned EC number	0.9137	0.2094	0.8846	no	N/A
A9UMV8	H2AJ_RAT	No assigned EC number	0.8965	0.2094	0.8914	yes	N/A
P16104	H2AX_HUMAN	No assigned EC number	0.9051	0.2094	0.8041	no	N/A
Q8CGP7	H2A1K_MOUSE	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
Q7ZUY3	H2AX_DANRE	No assigned EC number	0.9137	0.2094	0.8098	no	N/A
P04908	H2A1B_HUMAN	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
P0C170	H2A1E_RAT	No assigned EC number	0.9137	0.2094	0.8846	no	N/A
P02269	H2A_ASTRU	No assigned EC number	0.9304	0.2094	0.92	N/A	N/A
P02262	H2A1_RAT	No assigned EC number	0.9051	0.2094	0.8846	no	N/A
P02263	H2A4_CHICK	No assigned EC number	0.9051	0.2094	0.8914	yes	N/A
P02264	H2A_ONCMY	No assigned EC number	0.9137	0.2094	0.8984	N/A	N/A
Q8CGP5	H2A1F_MOUSE	No assigned EC number	0.9051	0.2094	0.8846	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	549
PTZ00017	134	PTZ00017, PTZ00017, histone H2A; Provisional	5e-66
cd00074	115	cd00074, H2A, Histone 2A; H2A is a subunit of the	2e-64
PLN00157	132	PLN00157, PLN00157, histone H2A; Provisional	8e-62
smart00414	106	smart00414, H2A, Histone 2A	1e-58
PLN00156	139	PLN00156, PLN00156, histone H2AX; Provisional	6e-53
COG5262	132	COG5262, HTA1, Histone H2A [Chromatin structure an	3e-52
PLN00153	129	PLN00153, PLN00153, histone H2A; Provisional	3e-49
PLN00154	136	PLN00154, PLN00154, histone H2A; Provisional	3e-38
PTZ00017	134	PTZ00017, PTZ00017, histone H2A; Provisional	4e-38
cd00074	115	cd00074, H2A, Histone 2A; H2A is a subunit of the	3e-37
PLN00157	132	PLN00157, PLN00157, histone H2A; Provisional	2e-36
smart00414	106	smart00414, H2A, Histone 2A	7e-33
PLN00156	139	PLN00156, PLN00156, histone H2AX; Provisional	9e-31
PLN00153	129	PLN00153, PLN00153, histone H2A; Provisional	8e-29
PTZ00252	134	PTZ00252, PTZ00252, histone H2A; Provisional	3e-28
COG5262	132	COG5262, HTA1, Histone H2A [Chromatin structure an	5e-28
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	1e-23
PLN00154	136	PLN00154, PLN00154, histone H2A; Provisional	3e-21
PLN00155	58	PLN00155, PLN00155, histone H2A; Provisional	1e-19
PLN00155	58	PLN00155, PLN00155, histone H2A; Provisional	2e-19
PTZ00252	134	PTZ00252, PTZ00252, histone H2A; Provisional	1e-16
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	2e-16
COG5247	113	COG5247, BUR6, Class 2 transcription repressor NC2	1e-05
pfam00808	65	pfam00808, CBFD_NFYB_HMF, Histone-like transcripti	0.001

>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional

 Score =  210 bits (536), Expect = 5e-66
 Identities = 88/118 (74%), Positives = 99/118 (83%), Gaps = 3/118 (2%)

Query: 207 MSGRGKGGKAKAKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEY 263
             G+GK G  KA  K   +RS++AGLQFPVGR+HR L+KG YA+RVGAGAPVYLAAV+EY
Sbjct: 1   KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEY 60

Query: 264 LAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           L AEVLELAGNAA+DNKK RI PRH+QLAIRNDEELNKLL+GVTIA GGVLPNI   L
Sbjct: 61  LTAEVLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVL 118

Length = 134

>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome

 Score =  205 bits (523), Expect = 2e-64
 Identities = 90/109 (82%), Positives = 97/109 (88%)

Query: 213 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 272
           GGK K+K ++RS+RAGLQFPVGRIHR L+KG YAERVGAGAPVYLAAV+EYL AEVLELA
Sbjct: 3   GGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELA 62

Query: 273 GNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           GNAARDNKK RI PRHLQLA+RNDEELNKLL GVTIA GGVLPNI   L
Sbjct: 63  GNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKVL 111

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins. Length = 115

>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional

 Score =  199 bits (507), Expect = 8e-62
 Identities = 89/117 (76%), Positives = 101/117 (86%), Gaps = 2/117 (1%)

Query: 207 MSGRGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264
           MSGRGK  GG    K+ +RS++AGLQFPVGRI R L+ G YA RVGAGAPVYLAAV+EYL
Sbjct: 1   MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYL 60

Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AAEVLELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLL GVTIA GGVLPNI + L
Sbjct: 61  AAEVLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVL 117

Length = 132

>gnl|CDD|197711 smart00414, H2A, Histone 2A

 Score =  189 bits (483), Expect = 1e-58
 Identities = 88/100 (88%), Positives = 92/100 (92%)

Query: 222 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 281
           +RS+RAGLQFPVGRIHRLLRKG YA+RVGAGAPVYLAAV+EYL AEVLELAGNAARDNKK
Sbjct: 1   SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60

Query: 282 TRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
            RI PRHLQLAIRNDEELNKLL GVTIAQGGVLPNI   L
Sbjct: 61  RRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHKVL 100

Length = 106

>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional

 Score =  176 bits (447), Expect = 6e-53
 Identities = 87/117 (74%), Positives = 99/117 (84%), Gaps = 1/117 (0%)

Query: 206 TMSGRGKGGKAKA-KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264
           + + +G  GK KA KS +RSS+AGLQFPVGRI R L+ G YAERVGAGAPVYL+AV+EYL
Sbjct: 4   SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 63

Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AAEVLELAGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   L
Sbjct: 64  AAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQTL 120

Length = 139

>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics]

 Score =  173 bits (441), Expect = 3e-52
 Identities = 90/115 (78%), Positives = 99/115 (86%), Gaps = 2/115 (1%)

Query: 209 GRGKGGKAKA--KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
             GKGGKA     S++RS++AGL FPVGR+ RLL+KGNY  R+GAGAPVYLAAV+EYLAA
Sbjct: 3   SGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAA 62

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           E+LELAGNAARDNKK RIIPRHLQLAIRNDEELNKLL  VTIAQGGVLPNI  GL
Sbjct: 63  EILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINPGL 117

Length = 132

>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional

 Score =  166 bits (420), Expect = 3e-49
 Identities = 88/115 (76%), Positives = 99/115 (86%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           M+GRGKG  +  K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL A
Sbjct: 1   MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTA 60

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           EVLELAGNAARDNKK RI+PRH+QLAIRNDEEL KLL  VTIA GGVLPNI A L
Sbjct: 61  EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVL 115

Length = 129

>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional

 Score =  136 bits (344), Expect = 3e-38
 Identities = 73/117 (62%), Positives = 85/117 (72%), Gaps = 2/117 (1%)

Query: 206 TMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYL 264
           T +   K  K K K  +RSSRAGLQFPVGRIHR L++   A  RVGA A VY AA++EYL
Sbjct: 14  TTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYL 73

Query: 265 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
            AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+ G TIA GGV+P+I   L
Sbjct: 74  TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSL 129

Length = 136

>gnl|CDD|185399 PTZ00017, PTZ00017, histone H2A; Provisional

 Score =  136 bits (344), Expect = 4e-38
 Identities = 55/79 (69%), Positives = 64/79 (81%), Gaps = 3/79 (3%)

Query: 349 MSGRGKGGKTKTKSK---TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEY 405
             G+GK G  K   K   +RS++AGLQFPVGR+HR L+KG YA+RVGAGAPVYLAAV+EY
Sbjct: 1   KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEY 60

Query: 406 LAAEVLELAGNAARDNKKT 424
           L AEVLELAGNAA+DNKK 
Sbjct: 61  LTAEVLELAGNAAKDNKKK 79

Length = 134

>gnl|CDD|238029 cd00074, H2A, Histone 2A; H2A is a subunit of the nucleosome

 Score =  133 bits (337), Expect = 3e-37
 Identities = 58/70 (82%), Positives = 64/70 (91%)

Query: 355 GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 414
           GGK K+K ++RS+RAGLQFPVGRIHR L+KG YAERVGAGAPVYLAAV+EYL AEVLELA
Sbjct: 3   GGKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELA 62

Query: 415 GNAARDNKKT 424
           GNAARDNKK 
Sbjct: 63  GNAARDNKKK 72

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins. Length = 115

>gnl|CDD|177758 PLN00157, PLN00157, histone H2A; Provisional

 Score =  131 bits (331), Expect = 2e-36
 Identities = 59/78 (75%), Positives = 66/78 (84%), Gaps = 2/78 (2%)

Query: 349 MSGRGK--GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
           MSGRGK  GG    K+ +RS++AGLQFPVGRI R L+ G YA RVGAGAPVYLAAV+EYL
Sbjct: 1   MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYL 60

Query: 407 AAEVLELAGNAARDNKKT 424
           AAEVLELAGNAARDNKK+
Sbjct: 61  AAEVLELAGNAARDNKKS 78

Length = 132

>gnl|CDD|197711 smart00414, H2A, Histone 2A

 Score =  120 bits (304), Expect = 7e-33
 Identities = 54/61 (88%), Positives = 58/61 (95%)

Query: 364 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
           +RS+RAGLQFPVGRIHRLLRKG YA+RVGAGAPVYLAAV+EYL AEVLELAGNAARDNKK
Sbjct: 1   SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKK 60

Query: 424 T 424
            
Sbjct: 61  R 61

Length = 106

>gnl|CDD|215080 PLN00156, PLN00156, histone H2AX; Provisional

 Score =  116 bits (292), Expect = 9e-31
 Identities = 58/78 (74%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 348 TMSGRGKGGKTK-TKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
           + + +G  GK K TKS +RSS+AGLQFPVGRI R L+ G YAERVGAGAPVYL+AV+EYL
Sbjct: 4   SGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYL 63

Query: 407 AAEVLELAGNAARDNKKT 424
           AAEVLELAGNAARDNKK 
Sbjct: 64  AAEVLELAGNAARDNKKN 81

Length = 139

>gnl|CDD|165721 PLN00153, PLN00153, histone H2A; Provisional

 Score =  110 bits (276), Expect = 8e-29
 Identities = 57/75 (76%), Positives = 66/75 (88%)

Query: 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 408
           M+GRGKG  +  K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL A
Sbjct: 1   MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTA 60

Query: 409 EVLELAGNAARDNKK 423
           EVLELAGNAARDNKK
Sbjct: 61  EVLELAGNAARDNKK 75

Length = 129

>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional

 Score =  108 bits (272), Expect = 3e-28
 Identities = 54/109 (49%), Positives = 75/109 (68%), Gaps = 2/109 (1%)

Query: 215 KAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGN 274
           KA      RS++AGL FPVGR+  LLR+G YA R+GA   VY+AAV+EYL AE+LEL+  
Sbjct: 10  KASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVK 69

Query: 275 AARDN--KKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AA     K  R+ PR + LA+R+D++L  LL  VT+++GGV+P++   L
Sbjct: 70  AAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKAL 118

Length = 134

>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics]

 Score =  108 bits (271), Expect = 5e-28
 Identities = 54/76 (71%), Positives = 63/76 (82%), Gaps = 2/76 (2%)

Query: 351 GRGKGGKT--KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 408
             GKGGK      S++RS++AGL FPVGR+ RLL+KGNY  R+GAGAPVYLAAV+EYLAA
Sbjct: 3   SGGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAA 62

Query: 409 EVLELAGNAARDNKKT 424
           E+LELAGNAARDNKK 
Sbjct: 63  EILELAGNAARDNKKK 78

Length = 132

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 94.2 bits (235), Expect = 1e-23
 Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 223 RSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 281
            S    L+ P  R+ R L++G YAE R+ + APV L   +E L  E+LE AG  AR  K+
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 282 TRIIPRHLQLAIRND 296
             I PR +QLA+R D
Sbjct: 61  KTITPRDIQLAVRLD 75

Length = 75

>gnl|CDD|177756 PLN00154, PLN00154, histone H2A; Provisional

 Score = 89.6 bits (222), Expect = 3e-21
 Identities = 47/76 (61%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 348 TMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYL 406
           T +   K  K K K  +RSSRAGLQFPVGRIHR L++   A  RVGA A VY AA++EYL
Sbjct: 14  TTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYL 73

Query: 407 AAEVLELAGNAARDNK 422
            AEVLELAGNA++D K
Sbjct: 74  TAEVLELAGNASKDLK 89

Length = 136

>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional

 Score = 82.1 bits (202), Expect = 1e-19
 Identities = 41/58 (70%), Positives = 50/58 (86%)

Query: 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
           M+GRGKG  +  K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL
Sbjct: 1   MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58

Length = 58

>gnl|CDD|165723 PLN00155, PLN00155, histone H2A; Provisional

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 41/58 (70%), Positives = 50/58 (86%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 264
           M+GRGKG  +  K+ +RS++AGLQFPVGRI R L+KG YAER+GAGAPVYLAAV+EYL
Sbjct: 1   MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL 58

Length = 58

>gnl|CDD|240330 PTZ00252, PTZ00252, histone H2A; Provisional

 Score = 76.5 bits (188), Expect = 1e-16
 Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 4/84 (4%)

Query: 357 KTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGN 416
           K       RS++AGL FPVGR+  LLR+G YA R+GA   VY+AAV+EYL AE+LEL+  
Sbjct: 10  KASKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVK 69

Query: 417 AA-RDNKKTHSWWCLTAETVQGAA 439
           AA +  KK      LT  TV  A 
Sbjct: 70  AAAQQAKKPKR---LTPRTVTLAV 90

Length = 134

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 73.7 bits (182), Expect = 2e-16
 Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 365 RSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
            S    L+ P  R+ R L++G YAE R+ + APV L   +E L  E+LE AG  AR  K+
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 424 T 424
            
Sbjct: 61  K 61

Length = 75

>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 18/82 (21%), Positives = 37/82 (45%)

Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
           +FP+ R+ ++++      +VG   PV  +  +E    E++ L+   AR     R+    L
Sbjct: 23  RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFL 82

Query: 290 QLAIRNDEELNKLLSGVTIAQG 311
           + A  +DE+ + L +       
Sbjct: 83  KRATESDEKFDFLKNMEQFKNR 104

Length = 113

>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) and archaeal histone

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 8/67 (11%)

Query: 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVME----YLAAEVLELAGNAARDNKKTRIIP 286
            P+ R+ R+++    A R+   A   +A  +E    ++A+E  E+     ++ +KT I  
Sbjct: 3   LPIARVKRIMKSDPDAGRISQDAKELIAECVEEFIEFIASEAAEICK---KEKRKT-INA 58

Query: 287 RHLQLAI 293
            H++LA+
Sbjct: 59  EHIKLAV 65

This family includes archaebacterial histones and histone like transcription factors from eukaryotes. Length = 65

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	549
PLN00153	129	histone H2A; Provisional	100.0
PLN00157	132	histone H2A; Provisional	100.0
PTZ00017	134	histone H2A; Provisional	100.0
PLN00156	139	histone H2AX; Provisional	100.0
PLN00153	129	histone H2A; Provisional	100.0
PTZ00252	134	histone H2A; Provisional	100.0
PLN00157	132	histone H2A; Provisional	100.0
KOG1756|consensus	131		100.0
PLN00154	136	histone H2A; Provisional	100.0
smart00414	106	H2A Histone 2A.	100.0
PLN00156	139	histone H2AX; Provisional	100.0
PTZ00017	134	histone H2A; Provisional	100.0
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	100.0
KOG1756|consensus	131		100.0
PTZ00252	134	histone H2A; Provisional	100.0
PLN00154	136	histone H2A; Provisional	100.0
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	100.0
smart00414	106	H2A Histone 2A.	100.0
COG5262	132	HTA1 Histone H2A [Chromatin structure and dynamics	100.0
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	100.0
KOG1757|consensus	131		99.97
KOG1757|consensus	131		99.97
PLN00155	58	histone H2A; Provisional	99.83
PLN00155	58	histone H2A; Provisional	99.8
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.18
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.15
COG5247	113	BUR6 Class 2 transcription repressor NC2, alpha su	98.95
KOG1659|consensus	224		98.5
COG5247	113	BUR6 Class 2 transcription repressor NC2, alpha su	98.44
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	98.23
PLN00035	103	histone H4; Provisional	98.04
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	97.92
KOG1659|consensus	224		97.89
PLN00035	103	histone H4; Provisional	97.84
PTZ00015	102	histone H4; Provisional	97.36
PTZ00015	102	histone H4; Provisional	97.26
smart00803	65	TAF TATA box binding protein associated factor. TA	97.01
smart00803	65	TAF TATA box binding protein associated factor. TA	96.76
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	96.5
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	96.4
cd00076	85	H4 Histone H4, one of the four histones, along wit	96.29
KOG1657|consensus	236		95.92
cd00076	85	H4 Histone H4, one of the four histones, along wit	95.85
smart00417	74	H4 Histone H4.	95.41
smart00417	74	H4 Histone H4.	95.33
COG5208	286	HAP5 CCAAT-binding factor, subunit C [Transcriptio	95.17
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	94.76
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	94.59
cd08048	85	TAF11 TATA Binding Protein (TBP) Associated Factor	94.53
KOG1657|consensus	236		93.72
smart00427	89	H2B Histone H2B.	92.82
PLN00158	116	histone H2B; Provisional	92.11
PF04719	90	TAFII28: hTAFII28-like protein conserved region; I	90.95
PTZ00463	117	histone H2B; Provisional	90.67
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	90.66
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	90.57
COG5208	286	HAP5 CCAAT-binding factor, subunit C [Transcriptio	90.35
PLN00158	116	histone H2B; Provisional	90.27
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	90.19
PTZ00463	117	histone H2B; Provisional	89.8
KOG3219|consensus	195		89.38
PF02969	66	TAF: TATA box binding protein associated factor (T	89.34
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	88.78
cd08048	85	TAF11 TATA Binding Protein (TBP) Associated Factor	88.18
PF04719	90	TAFII28: hTAFII28-like protein conserved region; I	88.16
KOG3219|consensus	195		86.76
PF02969	66	TAF: TATA box binding protein associated factor (T	86.47
smart00427	89	H2B Histone H2B.	85.17
PF09415	72	CENP-X: CENP-S associating Centromere protein X; I	82.6
smart00428	105	H3 Histone H3.	80.99
smart00428	105	H3 Histone H3.	80.01

>PLN00153 histone H2A; Provisional

Probab=100.00  E-value=4.2e-44  Score=324.65  Aligned_cols=122  Identities=72%  Similarity=1.074  Sum_probs=116.8

Q ss_pred             ccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccch
Q psy7393         207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP  286 (549)
Q Consensus       207 MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITP  286 (549)
                      |||+|++++.+++..|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++||+|
T Consensus         1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItP   80 (129)
T PLN00153          1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVP   80 (129)
T ss_pred             CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCh
Confidence            89998866656678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         287 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       287 rHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      +||++||+||+||++||+++||++|||+|+||++|++||+..
T Consensus        81 rHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~~  122 (129)
T PLN00153         81 RHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKG  122 (129)
T ss_pred             HHHHhhccCcHHHHHHHCCCccCCCccCCCcchhhcCcccCC
Confidence            999999999999999999999999999999999999998643

>PLN00157 histone H2A; Provisional

Probab=100.00  E-value=1.9e-43  Score=321.49  Aligned_cols=121  Identities=74%  Similarity=1.109  Sum_probs=115.9

Q ss_pred             ccCCCC--CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q psy7393         207 MSGRGK--GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI  284 (549)
Q Consensus       207 MSgrgk--~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRI  284 (549)
                      |||+|+  +++++++..|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++||
T Consensus         1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RI   80 (132)
T PLN00157          1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRI   80 (132)
T ss_pred             CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            899887  446667889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhcCcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393         285 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI  327 (549)
Q Consensus       285 TPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~  327 (549)
                      +|+||++||+||+||+.||+++||++|||+|+||++|++||+.
T Consensus        81 tPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~~  123 (132)
T PLN00157         81 VPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSVLLPKKSG  123 (132)
T ss_pred             cHHHHhhcccCcHHHHHHHcCceecCCccCCCcchhhcCCCCC
Confidence            9999999999999999999999999999999999999999864

>PTZ00017 histone H2A; Provisional

Probab=100.00  E-value=3.5e-42  Score=314.01  Aligned_cols=122  Identities=72%  Similarity=1.078  Sum_probs=112.8

Q ss_pred             ccCCCCC-CC--CCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy7393         207 MSGRGKG-GK--AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR  283 (549)
Q Consensus       207 MSgrgk~-gk--~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkR  283 (549)
                      |||+++. ++  ++++..|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++|
T Consensus         1 ~~~~~~~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R   80 (134)
T PTZ00017          1 KGGKGKTGGGKAGKKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR   80 (134)
T ss_pred             CCCCCcCCCCcccCcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence            4566552 22  25567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         284 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       284 ITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      |+|+||++||+||+||+.||+++||++|||+|+||++|++||+..
T Consensus        81 ItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~~  125 (134)
T PTZ00017         81 ITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHKVLLPKKSKP  125 (134)
T ss_pred             ecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccHhhccCCCCc
Confidence            999999999999999999999999999999999999999998643

>PLN00156 histone H2AX; Provisional

Probab=100.00  E-value=4.1e-42  Score=314.71  Aligned_cols=115  Identities=72%  Similarity=1.055  Sum_probs=110.8

Q ss_pred             CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393         213 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA  292 (549)
Q Consensus       213 ~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA  292 (549)
                      +++++++.+|||+||||||||+||+|||++++|+.||+++|||||+||||||++||||||+|+|++++++||+|+||++|
T Consensus        12 g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lA   91 (139)
T PLN00156         12 GKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLA   91 (139)
T ss_pred             CcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhh
Confidence            44566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393         293 IRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI  327 (549)
Q Consensus       293 I~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~  327 (549)
                      |+||+||+.||+++||++|||+|+||++|++||+.
T Consensus        92 IrnDeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~  126 (139)
T PLN00156         92 VRNDEELSKLLGSVTIAAGGVLPNIHQTLLPKKVG  126 (139)
T ss_pred             ccCcHHHHHHHCCCccCCCccCCCccHhhcccccc
Confidence            99999999999999999999999999999999875

>PLN00153 histone H2A; Provisional

Probab=100.00  E-value=1.5e-41  Score=308.08  Aligned_cols=120  Identities=55%  Similarity=0.805  Sum_probs=114.6

Q ss_pred             cccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCccc
Q psy7393         349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWW  428 (549)
Q Consensus       349 msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~  428 (549)
                      |||+||+++.++|++|+|+|||||||||||||+|++++|+.||+++||||||||||||++||||||+|+|+|+|++|   
T Consensus         1 m~g~~~~~~~~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~R---   77 (129)
T PLN00153          1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNR---   77 (129)
T ss_pred             CCCCCCCCccccCccCcccccCcccchHHHHHHHhcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Confidence            89999977777789999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             ccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhcc
Q psy7393         429 CLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAT  478 (549)
Q Consensus       429 ~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t  478 (549)
                       |+|+|+++||+||+|||.+++      +|+|++|||+||||+.++++++
T Consensus        78 -ItPrHi~lAI~nDeEL~~Ll~------~vTIa~GGV~P~i~~~l~~kk~  120 (129)
T PLN00153         78 -IVPRHIQLAIRNDEELGKLLG------EVTIASGGVLPNIHAVLLPKKT  120 (129)
T ss_pred             -cChHHHHhhccCcHHHHHHHC------CCccCCCccCCCcchhhcCccc
Confidence             999999999999999999999      4677789999999999999886

>PTZ00252 histone H2A; Provisional

Probab=100.00  E-value=1.8e-41  Score=308.54  Aligned_cols=108  Identities=50%  Similarity=0.878  Sum_probs=103.0

Q ss_pred             CccCC-ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhh--cCCcccchhhhhhhhc
Q psy7393         218 AKSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTRIIPRHLQLAIR  294 (549)
Q Consensus       218 ~k~~S-rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~--~kkkRITPrHI~lAI~  294 (549)
                      ++..+ ||+|||||||||||+|||++++|+.||+++||||||||||||++||||||+|+|++  ++++||+|+||++||+
T Consensus        12 ~~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr   91 (134)
T PTZ00252         12 SKSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR   91 (134)
T ss_pred             cccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence            34455 99999999999999999999999999999999999999999999999999999965  7889999999999999


Q ss_pred             CcHHHHhhhcCceeccccccCCccccccccc
Q psy7393         295 NDEELNKLLSGVTIAQGGVLPNIQAGLKAEF  325 (549)
Q Consensus       295 NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK  325 (549)
                      ||+|||+||+++||++|||+|+||++|++||
T Consensus        92 NDeEL~~Ll~~vTIa~GGVlP~i~~~l~~k~  122 (134)
T PTZ00252         92 HDDDLGSLLKNVTLSRGGVMPSLNKALAKKH  122 (134)
T ss_pred             ChHHHHHHHcCCccCCCccCCCccHhhcccc
Confidence            9999999999999999999999999999984

>PLN00157 histone H2A; Provisional

Probab=100.00  E-value=1.1e-40  Score=303.45  Aligned_cols=121  Identities=57%  Similarity=0.845  Sum_probs=114.7

Q ss_pred             cccCCC--CCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCc
Q psy7393         349 MSGRGK--GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHS  426 (549)
Q Consensus       349 msg~gK--~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~  426 (549)
                      |||+||  +++.++|+.|+|+|||||||||||||+|++++|+.||+++||||||||||||++||||||+|+|+|++++| 
T Consensus         1 ms~~g~~~~~~~~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~R-   79 (132)
T PLN00157          1 MSGRGKRKGGGGGKKATSRSAKAGLQFPVGRIARYLKAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSR-   79 (132)
T ss_pred             CCCCCCCCCCccCcCCcCcccccCcccchHHHHHHHhcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCcc-
Confidence            889987  55667789999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             ccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         427 WWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       427 ~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                         |+|+|+++||+||+||+.+++      +++|++|||+||||+.+|++++.
T Consensus        80 ---ItPrHi~lAI~nDeEL~~Ll~------~vtIa~GGV~P~i~~~ll~kk~~  123 (132)
T PLN00157         80 ---IVPRHIQLAVRNDEELSKLLG------GVTIAAGGVLPNIHSVLLPKKSG  123 (132)
T ss_pred             ---ccHHHHhhcccCcHHHHHHHc------CceecCCccCCCcchhhcCCCCC
Confidence               999999999999999999999      57788899999999999999875

>KOG1756|consensus

Probab=100.00  E-value=1.5e-40  Score=299.33  Aligned_cols=122  Identities=82%  Similarity=1.153  Sum_probs=114.8

Q ss_pred             ccCCCCCCCC---CCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy7393         207 MSGRGKGGKA---KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR  283 (549)
Q Consensus       207 MSgrgk~gk~---~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkR  283 (549)
                      ||+++++||.   ++++.++|.|+|||||||||+|+||+++|++||+.+|||||+||||||++||+|+|+|+|+++++.|
T Consensus         1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r   80 (131)
T KOG1756|consen    1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR   80 (131)
T ss_pred             CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence            6777775543   3566799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         284 IIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       284 ITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      |+|+||++||+||+||++|+++|||++|||+|+||+.+++||+.+
T Consensus        81 i~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~~~  125 (131)
T KOG1756|consen   81 ITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAILLPKKTGK  125 (131)
T ss_pred             cChHHHHHHHhCcHHHHHHhccceeccCCcccccchhhccccccc
Confidence            999999999999999999999999999999999999999999765

>PLN00154 histone H2A; Provisional

Probab=100.00  E-value=2.6e-40  Score=301.80  Aligned_cols=111  Identities=61%  Similarity=0.872  Sum_probs=106.1

Q ss_pred             CCCccCCccccccccccchhhhhhhhcCC-cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         216 AKAKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       216 ~~~k~~SrSsRAGLqFPVsRI~RlLke~~-ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+++..|||+||||||||+||+|+||+++ |++||+++|||||+||||||++||||||+|+|++++++||+|+||++||+
T Consensus        24 ~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr  103 (136)
T PLN00154         24 DKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR  103 (136)
T ss_pred             CCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence            45578999999999999999999999997 67899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393         295 NDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI  327 (549)
Q Consensus       295 NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~  327 (549)
                      ||+||++||+ +||++|||+|+||++|++||++
T Consensus       104 nDeEL~~Ll~-~TIa~GGVlP~i~~~l~~k~~~  135 (136)
T PLN00154        104 GDEELDTLIK-GTIAGGGVIPHIHKSLINKSTK  135 (136)
T ss_pred             CcHHHHHHhc-CCccCCccCCCcchhhcccccC
Confidence            9999999997 6999999999999999999865

>smart00414 H2A Histone 2A

Probab=100.00  E-value=3.6e-40  Score=291.04  Aligned_cols=105  Identities=84%  Similarity=1.211  Sum_probs=103.5

Q ss_pred             CccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHh
Q psy7393         222 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNK  301 (549)
Q Consensus       222 SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~  301 (549)
                      |||+||||||||+||+||||+++|++||+++|+|||+||||||++||||+|+|+|++++++||||+||++||+||+|||+
T Consensus         1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~   80 (106)
T smart00414        1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELNK   80 (106)
T ss_pred             CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCceeccccccCCcccccccccc
Q psy7393         302 LLSGVTIAQGGVLPNIQAGLKAEFS  326 (549)
Q Consensus       302 Lfk~vtIs~GGVlP~I~~~ll~kK~  326 (549)
                      ||+++||++|||+|+||+++++||+
T Consensus        81 L~~~vti~~ggv~p~i~~~l~~~~~  105 (106)
T smart00414       81 LLKGVTIAQGGVLPNIHKVLLPKKT  105 (106)
T ss_pred             HHcCcccCCCccCCCcchhhcccCC
Confidence            9999999999999999999999986

>PLN00156 histone H2AX; Provisional

Probab=100.00  E-value=1.1e-39  Score=298.73  Aligned_cols=118  Identities=55%  Similarity=0.802  Sum_probs=111.1

Q ss_pred             CCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccC
Q psy7393         352 RGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLT  431 (549)
Q Consensus       352 ~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~IT  431 (549)
                      .|+|+++++|++|+|+||||||||+||||+|++++|+.||+++||||||||||||++||||||+|+|+|++++|    |+
T Consensus         9 ~~~g~~~~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~R----It   84 (139)
T PLN00156          9 GGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNR----IV   84 (139)
T ss_pred             CCCCcccccCCcCcccccCcccchHHHHHHHhcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----Cc
Confidence            34566677789999999999999999999999999999999999999999999999999999999999999998    99


Q ss_pred             hHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         432 AETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       432 PehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      |+|+++||+||+|||.+++      +++|++|||+||||+.++++++.
T Consensus        85 PrHi~lAIrnDeEL~~Ll~------~vTIa~GGV~P~i~~~l~~kk~~  126 (139)
T PLN00156         85 PRHIQLAVRNDEELSKLLG------SVTIAAGGVLPNIHQTLLPKKVG  126 (139)
T ss_pred             HHHHHhhccCcHHHHHHHC------CCccCCCccCCCccHhhcccccc
Confidence            9999999999999999999      46777799999999999999986

>PTZ00017 histone H2A; Provisional

Probab=100.00  E-value=2.8e-39  Score=295.08  Aligned_cols=110  Identities=55%  Similarity=0.808  Sum_probs=105.4

Q ss_pred             CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393         359 KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA  438 (549)
Q Consensus       359 k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA  438 (549)
                      ++|+.|+|+||||||||+||||+|++++|+.||+++||||||||||||++||||||+|+|+|++++|    |||+||++|
T Consensus        14 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~R----ItPrHi~lA   89 (134)
T PTZ00017         14 KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKR----ITPRHIQLA   89 (134)
T ss_pred             CcCcccccccCCcccchHHHHHHHhccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCe----ecHHHHHhh
Confidence            5578999999999999999999999999999999999999999999999999999999999999998    999999999


Q ss_pred             HhCCcccccccCCCCcccceeecCCccccccchhhhhhcc
Q psy7393         439 ALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAT  478 (549)
Q Consensus       439 I~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t  478 (549)
                      |+||+|||.+++      +++|++|||+||||++++++++
T Consensus        90 I~nDeEL~~Ll~------~vtIa~GGV~P~i~~~l~~k~~  123 (134)
T PTZ00017         90 IRNDEELNKLLA------GVTIASGGVLPNIHKVLLPKKS  123 (134)
T ss_pred             ccCcHHHHHHHc------CCcccCCccCCCccHhhccCCC
Confidence            999999999998      4677889999999999999887

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=100.00  E-value=4.1e-39  Score=287.88  Aligned_cols=112  Identities=79%  Similarity=1.169  Sum_probs=108.5

Q ss_pred             CCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhh
Q psy7393         214 GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI  293 (549)
Q Consensus       214 gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI  293 (549)
                      +|++++.+|||+||||+|||+||+|||++++|+.||+++|+|||+||||||++||||+|+|.|+++++++|+|+||++||
T Consensus         4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi   83 (115)
T cd00074           4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAV   83 (115)
T ss_pred             CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence            36667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHhhhcCceeccccccCCccccccccc
Q psy7393         294 RNDEELNKLLSGVTIAQGGVLPNIQAGLKAEF  325 (549)
Q Consensus       294 ~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK  325 (549)
                      +||+||++||+++||++|||+|+||++|++||
T Consensus        84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~  115 (115)
T cd00074          84 RNDEELNKLLKGVTIASGGVLPNIHKVLLPKK  115 (115)
T ss_pred             hccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence            99999999999999999999999999999886

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>KOG1756|consensus

Probab=100.00  E-value=7.1e-39  Score=288.50  Aligned_cols=122  Identities=61%  Similarity=0.873  Sum_probs=114.2

Q ss_pred             cccCCCCCCC---CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy7393         349 MSGRGKGGKT---KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH  425 (549)
Q Consensus       349 msg~gK~gK~---k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR  425 (549)
                      |++++|+||.   ++++.++|.|+|||||||||+|+||+++|++||+++||||++||||||++||||+|+|+|+|++|+|
T Consensus         1 ~s~~~k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~r   80 (131)
T KOG1756|consen    1 MSGRGKGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR   80 (131)
T ss_pred             CCccCCCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccc
Confidence            6777777765   3456888999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhcccc
Q psy7393         426 SWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATGL  480 (549)
Q Consensus       426 ~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~l  480 (549)
                          |+|+|+++||+||+||+.+++      +|+|++|||+|+|++.+|+|+++-
T Consensus        81 ----i~PrH~~lAI~NDeEL~~lL~------~vtIa~GGvlPnI~~~lLpKk~~~  125 (131)
T KOG1756|consen   81 ----ITPRHLQLAIRNDEELNKLLG------KVTIAQGGVLPNIQAILLPKKTGK  125 (131)
T ss_pred             ----cChHHHHHHHhCcHHHHHHhc------cceeccCCcccccchhhccccccc
Confidence                999999999999999999999      689999999999999999998864

>PTZ00252 histone H2A; Provisional

Probab=100.00  E-value=1.7e-38  Score=289.10  Aligned_cols=106  Identities=42%  Similarity=0.595  Sum_probs=99.6

Q ss_pred             cCCC-cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhh--cCCCCcccccChHHHHH
Q psy7393         361 KSKT-RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD--NKKTHSWWCLTAETVQG  437 (549)
Q Consensus       361 k~~S-rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd--~kkkR~~~~ITPehLql  437 (549)
                      |..+ ||+|||||||||||||+|++++|+.||+++||||||||||||++||||||||+|+|  +|++|    |+|+||++
T Consensus        13 ~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~R----ItPrHi~l   88 (134)
T PTZ00252         13 KSGSGRSAKAGLIFPVGRVGSLLRRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKR----LTPRTVTL   88 (134)
T ss_pred             ccccccccccCccCchHHHHHHHHcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccHHHHHh
Confidence            4555 99999999999999999999999999999999999999999999999999999976  67776    99999999


Q ss_pred             HHhCCcccccccCCCCcccceeecCCccccccchhhhhh
Q psy7393         438 AALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLEN  476 (549)
Q Consensus       438 AI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~  476 (549)
                      ||+||+|||.++++      ++|++|||+||||++++++
T Consensus        89 AIrNDeEL~~Ll~~------vTIa~GGVlP~i~~~l~~k  121 (134)
T PTZ00252         89 AVRHDDDLGSLLKN------VTLSRGGVMPSLNKALAKK  121 (134)
T ss_pred             hccChHHHHHHHcC------CccCCCccCCCccHhhccc
Confidence            99999999999984      6777799999999999998

>PLN00154 histone H2A; Provisional

Probab=100.00  E-value=2.6e-38  Score=288.66  Aligned_cols=121  Identities=45%  Similarity=0.579  Sum_probs=108.8

Q ss_pred             ccccCCC------CCCCCCcCCCcCcccccccchhhhhHhhhcCC-ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhh
Q psy7393         348 TMSGRGK------GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGN-YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD  420 (549)
Q Consensus       348 ~msg~gK------~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~-ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd  420 (549)
                      +|+|+++      .++.++|+.|||+||||||||+||||+||+++ |++||+++||||||||||||++||||||||+|+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d   87 (136)
T PLN00154          8 GLLAAKTTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKD   87 (136)
T ss_pred             ccccCCcCCcccccccCCcCCcCcccccCccCchHHHHHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666542      12345678999999999999999999999997 5789999999999999999999999999999999


Q ss_pred             cCCCCcccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         421 NKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       421 ~kkkR~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      +|++|    |||+||++||+||+||+.+++       ++|++|||+||||+++++++++
T Consensus        88 ~kk~R----ItPrHi~lAIrnDeEL~~Ll~-------~TIa~GGVlP~i~~~l~~k~~~  135 (136)
T PLN00154         88 LKVKR----ITPRHLQLAIRGDEELDTLIK-------GTIAGGGVIPHIHKSLINKSTK  135 (136)
T ss_pred             hCCce----ecHHHhhhhccCcHHHHHHhc-------CCccCCccCCCcchhhcccccC
Confidence            99998    999999999999999999996       3677799999999999999874

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-38  Score=281.56  Aligned_cols=120  Identities=76%  Similarity=1.104  Sum_probs=110.8

Q ss_pred             CCCCC--CCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhh
Q psy7393         211 GKGGK--AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH  288 (549)
Q Consensus       211 gk~gk--~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrH  288 (549)
                      ||++|  .-+...|+|.++||+|||+||+|+|++++|.+||++.|+||++||||||++||+|+|+|+|++++++||+|+|
T Consensus         5 GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrH   84 (132)
T COG5262           5 GKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRH   84 (132)
T ss_pred             CcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHH
Confidence            45555  2234579999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCcHHHHhhhcCceeccccccCCccccccccccccee
Q psy7393         289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITIS  330 (549)
Q Consensus       289 I~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~~s  330 (549)
                      |++||+||+||++|+++|||++|||+|||++.+++|..++.+
T Consensus        85 lqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~skK~s  126 (132)
T COG5262          85 LQLAIRNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSKKGS  126 (132)
T ss_pred             HHHHhcCcHHHHHHhhhheeecCCcccccChhhhhhhhccCC
Confidence            999999999999999999999999999999999997665544

>smart00414 H2A Histone 2A

Probab=100.00  E-value=3.1e-37  Score=272.35  Aligned_cols=106  Identities=61%  Similarity=0.866  Sum_probs=102.0

Q ss_pred             CcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393         364 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE  443 (549)
Q Consensus       364 SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe  443 (549)
                      |||+|||||||||||||+||+++|+.||+++|+||||||||||++||||||+|+|+|+|++|    |||+|+++||+||+
T Consensus         1 srS~ragL~fPVgRi~r~Lk~~~~~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~r----Itp~hi~lAi~nD~   76 (106)
T smart00414        1 SRSARAGLQFPVGRIHRLLRKGTYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRR----ITPRHLQLAIRNDE   76 (106)
T ss_pred             CccccCCccCchHHHHHHHHcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cchHHHhhhccCCH
Confidence            68999999999999999999999999999999999999999999999999999999999987    99999999999999


Q ss_pred             ccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         444 RVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       444 EL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      |||.++++      ++|++|||+||||++++++++|
T Consensus        77 EL~~L~~~------vti~~ggv~p~i~~~l~~~~~~  106 (106)
T smart00414       77 ELNKLLKG------VTIAQGGVLPNIHKVLLPKKTG  106 (106)
T ss_pred             HHHHHHcC------cccCCCccCCCcchhhcccCCC
Confidence            99999994      7778899999999999999875

>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]

Probab=100.00  E-value=1.2e-36  Score=271.01  Aligned_cols=118  Identities=53%  Similarity=0.784  Sum_probs=109.3

Q ss_pred             CCCCCC-CCC-cCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccc
Q psy7393         352 RGKGGK-TKT-KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWC  429 (549)
Q Consensus       352 ~gK~gK-~k~-k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~  429 (549)
                      .||||| ... ...++|.++||+||||||+|+||+++|.+||+++|+||++||||||++||||+|+|+|+|+|+||    
T Consensus         4 ~GKGgK~a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkr----   79 (132)
T COG5262           4 GGKGGKAADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKR----   79 (132)
T ss_pred             CCcCcccccchhccchhhhcCccccHHHHHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcce----
Confidence            457777 333 35899999999999999999999999999999999999999999999999999999999999998    


Q ss_pred             cChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         430 LTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       430 ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      |+|+|+|+||+||+||+.+.+      .|+|++|||.|||.+.+|.+++.
T Consensus        80 i~PrHlqlAIrnD~EL~~l~~------~~tIa~GGvlp~I~~~ll~k~sk  123 (132)
T COG5262          80 IIPRHLQLAIRNDEELNKLLG------DVTIAQGGVLPNINPGLLPKSSK  123 (132)
T ss_pred             echHHHHHHhcCcHHHHHHhh------hheeecCCcccccChhhhhhhhc
Confidence            999999999999999999998      59999999999999999988753

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=100.00  E-value=3e-36  Score=269.49  Aligned_cols=112  Identities=59%  Similarity=0.851  Sum_probs=106.1

Q ss_pred             CCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHH
Q psy7393         356 GKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETV  435 (549)
Q Consensus       356 gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehL  435 (549)
                      ||+++|++|+|+|+||||||+||+|+||+++|+.||+++|+|||+||||||++||||+|+|+|++++++|    |+|+||
T Consensus         4 ~k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~kr----Itp~hi   79 (115)
T cd00074           4 GKKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKR----ITPRHL   79 (115)
T ss_pred             CccCcCccccccccCccCcHHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----EcHHHH
Confidence            4777789999999999999999999999999999999999999999999999999999999999999997    999999


Q ss_pred             HHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhc
Q psy7393         436 QGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENA  477 (549)
Q Consensus       436 qlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~  477 (549)
                      ++||+||+|||.+|++      ++|++|||+||||+++++++
T Consensus        80 ~lAi~nD~EL~~L~~~------vtI~~ggv~p~i~~~l~~~~  115 (115)
T cd00074          80 QLAVRNDEELNKLLKG------VTIASGGVLPNIHKVLLPKK  115 (115)
T ss_pred             HHHHhccHHHHHHHcC------CcccCCccCCCcchhhcCCC
Confidence            9999999999999994      67777999999999998764

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>KOG1757|consensus

Probab=99.97  E-value=2e-33  Score=249.01  Aligned_cols=111  Identities=61%  Similarity=0.883  Sum_probs=103.7

Q ss_pred             CCccCCccccccccccchhhhhhhhcCCc-ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         217 KAKSKTRSSRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       217 ~~k~~SrSsRAGLqFPVsRI~RlLke~~y-a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      +.+.+|+|+|+||||||+||||+|+.... ..||++.++||.+|+|||||+|+||||+|++++.+.+||||+|+|+||+.
T Consensus        17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRG   96 (131)
T KOG1757|consen   17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG   96 (131)
T ss_pred             hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecC
Confidence            35678999999999999999999999654 47999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         296 DEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       296 DeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      |+||+.|++. ||++|||+||||++++.|+...
T Consensus        97 DeELDtLIk~-TiagGgViPhihk~l~~k~~~~  128 (131)
T KOG1757|consen   97 DEELDTLIKA-TIAGGGVIPHIHKSLINKKGKK  128 (131)
T ss_pred             cHHHHHHHHH-hhccCccccchHHHHhcccccc
Confidence            9999999966 8999999999999999887654

>KOG1757|consensus

Probab=99.97  E-value=7e-33  Score=245.52  Aligned_cols=109  Identities=47%  Similarity=0.635  Sum_probs=101.9

Q ss_pred             CCcCCCcCcccccccchhhhhHhhhcCCc-cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHH
Q psy7393         359 KTKSKTRSSRAGLQFPVGRIHRLLRKGNY-AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQG  437 (549)
Q Consensus       359 k~k~~SrSsRAgLqFPVgRI~R~Lk~g~y-a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLql  437 (549)
                      +.+.+|+|+|+||||||+||||+||.... +.||+++|.||++|||||||+||||||||+++|.|.||    |||+|+|+
T Consensus        17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKR----itprHlqL   92 (131)
T KOG1757|consen   17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKR----ITPRHLQL   92 (131)
T ss_pred             hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeee----ccchhhee
Confidence            46789999999999999999999999654 58999999999999999999999999999999999998    99999999


Q ss_pred             HHhCCcccccccCCCCcccceeecCCccccccchhhhhhcc
Q psy7393         438 AALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENAT  478 (549)
Q Consensus       438 AI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t  478 (549)
                      ||+.||||+.+++       .+|+||||+|||++.++-|++
T Consensus        93 AiRGDeELDtLIk-------~TiagGgViPhihk~l~~k~~  126 (131)
T KOG1757|consen   93 AIRGDEELDTLIK-------ATIAGGGVIPHIHKSLINKKG  126 (131)
T ss_pred             eecCcHHHHHHHH-------HhhccCccccchHHHHhcccc
Confidence            9999999999996       579999999999999887764

>PLN00155 histone H2A; Provisional

Probab=99.83  E-value=1.9e-21  Score=155.31  Aligned_cols=58  Identities=71%  Similarity=1.185  Sum_probs=54.9

Q ss_pred             cccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHH
Q psy7393         349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL  406 (549)
Q Consensus       349 msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYL  406 (549)
                      |||+||+++.+++++|+|+||||||||+||||+|++++|+.||+++||||||||||||
T Consensus         1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL   58 (58)
T PLN00155          1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL   58 (58)
T ss_pred             CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence            8899887776778899999999999999999999999999999999999999999997

>PLN00155 histone H2A; Provisional

Probab=99.80  E-value=3.3e-20  Score=148.26  Aligned_cols=58  Identities=71%  Similarity=1.180  Sum_probs=54.0

Q ss_pred             ccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHH
Q psy7393         207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL  264 (549)
Q Consensus       207 MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYL  264 (549)
                      |||+|++++.+++.+|+|+||||||||+||+|+|++++|+.||+++||||||||||||
T Consensus         1 msg~g~g~~~~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~Rvga~apVYlAAVLEYL   58 (58)
T PLN00155          1 MAGRGKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYL   58 (58)
T ss_pred             CCCCCCCCccccCccCcccccccccchHHHHHHHhcCChhhcccCCcHHHHHHHHHhC
Confidence            8898876665667899999999999999999999999999999999999999999997

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.18  E-value=1.2e-11  Score=101.17  Aligned_cols=73  Identities=41%  Similarity=0.607  Sum_probs=68.5

Q ss_pred             cccccccccchhhhhhhhcCCccc-ccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         224 SSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       224 SsRAGLqFPVsRI~RlLke~~ya~-RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      +.+..+.||+.|+.|-+.++.+.. ||++.|.+||.+++||++.+|++.|++.|..+++++|+|+||+.|+++|
T Consensus         2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~   75 (75)
T PF00125_consen    2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID   75 (75)
T ss_dssp             HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred             cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence            457788999999999999988774 9999999999999999999999999999999999999999999999875

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.15  E-value=3.7e-11  Score=98.26  Aligned_cols=73  Identities=34%  Similarity=0.447  Sum_probs=67.2

Q ss_pred             CcccccccchhhhhHhhhcCCccc-cccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393         366 SSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF  442 (549)
Q Consensus       366 SsRAgLqFPVgRI~R~Lk~g~ya~-RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND  442 (549)
                      +.+..+.||+.|+.+-+..+.+.. ||++.|.+||.+++||++.+|+|.|++.|..+|+++    |+|+|++.|+++|
T Consensus         2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~t----I~~~DI~~A~r~~   75 (75)
T PF00125_consen    2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKT----ITPRDIQLAVRID   75 (75)
T ss_dssp             HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSE----EGHHHHHHHHHHT
T ss_pred             cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcE----ecHHHHHHHHhcC
Confidence            345778999999999999987774 999999999999999999999999999999999987    9999999999865

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

Probab=98.95  E-value=7.8e-10  Score=97.84  Aligned_cols=79  Identities=23%  Similarity=0.423  Sum_probs=74.3

Q ss_pred             cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCc
Q psy7393         228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGV  306 (549)
Q Consensus       228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~v  306 (549)
                      .-.||++|++++|+-.....+|++.+||.....||+++.+|+.+++.+||..+.+|||.+||..|+.+|+.+++|-...
T Consensus        21 ktrFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~~~   99 (113)
T COG5247          21 KTRFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKNME   99 (113)
T ss_pred             hhcCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHHHH
Confidence            3469999999999999999999999999999999999999999999999999999999999999999999999886433

>KOG1659|consensus

Probab=98.50  E-value=1e-07  Score=93.79  Aligned_cols=76  Identities=20%  Similarity=0.391  Sum_probs=72.7

Q ss_pred             cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      .-.||++||+++||......+|...+||.+.-.||.++.+|+..++.+++..+.++++|+||..||.+|+.+++|-
T Consensus        11 ~trfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk   86 (224)
T KOG1659|consen   11 KTRFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLK   86 (224)
T ss_pred             hccCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHH
Confidence            3469999999999999999999999999999999999999999999999999999999999999999999998875

>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

Probab=98.44  E-value=2.2e-07  Score=82.57  Aligned_cols=75  Identities=23%  Similarity=0.438  Sum_probs=70.8

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHG  450 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~g  450 (549)
                      .||++||+++|+-......|++.+||...-.||++..+|+.+++..|+....+|    ||.++|..|+.+|+.++.+-.
T Consensus        23 rFP~ar~KkIMQ~deDiGKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR----~t~e~lk~a~~sdekFdFL~~   97 (113)
T COG5247          23 RFPIARLKKIMQLDEDIGKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKR----MTSEFLKRATESDEKFDFLKN   97 (113)
T ss_pred             cCCHHHHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchh----hHHHHHHHHHhhhHHHHHHHH
Confidence            499999999999988889999999999999999999999999999999888887    999999999999999888764

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=98.23  E-value=1.5e-06  Score=69.99  Aligned_cols=64  Identities=20%  Similarity=0.288  Sum_probs=57.8

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhh
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAI  293 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI  293 (549)
                      .||.++|+|+||......+|+..|..+++-+.|.++.+|...|...|..++++.|+++||..||
T Consensus         2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen    2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            5999999999999867789999999999999999999999999999999999999999999885

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>PLN00035 histone H4; Provisional

Probab=98.04  E-value=7.1e-06  Score=73.31  Aligned_cols=86  Identities=28%  Similarity=0.353  Sum_probs=70.6

Q ss_pred             cccCCCCCCC-------CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393         349 MSGRGKGGKT-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN  421 (549)
Q Consensus       349 msg~gK~gK~-------k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~  421 (549)
                      ||++||+||.       +.++..+.+-++  +|..-|.|+.+++. ..|||.++...+..+||.+..+|+.-|...|+..
T Consensus         1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA   77 (103)
T PLN00035          1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA   77 (103)
T ss_pred             CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7888876653       222333444556  78889999999975 7899999999999999999999999999999988


Q ss_pred             CCCCcccccChHHHHHHHhC
Q psy7393         422 KKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       422 kkkR~~~~ITPehLqlAI~N  441 (549)
                      ++|.    |+.++|.+|+..
T Consensus        78 ~RKT----V~~~DV~~Alkr   93 (103)
T PLN00035         78 RRKT----VTAMDVVYALKR   93 (103)
T ss_pred             CCCc----CcHHHHHHHHHH
Confidence            8776    999999999864

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=97.92  E-value=2.4e-05  Score=63.04  Aligned_cols=64  Identities=23%  Similarity=0.314  Sum_probs=55.9

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHH
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAA  439 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI  439 (549)
                      .||+++|+|++|...-..+|+.+|..+++-..|.+..++..-|...|..++++.    |+++|+..|+
T Consensus         2 ~lP~a~vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkt----i~~~Dv~~Av   65 (65)
T PF00808_consen    2 SLPLARVKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKT----ITYEDVAKAV   65 (65)
T ss_dssp             SS-HHHHHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSE----E-HHHHHHHH
T ss_pred             CCChHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHC
Confidence            599999999999975567999999999999999999999999999999888776    9999999885

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>KOG1659|consensus

Probab=97.89  E-value=1.7e-05  Score=78.41  Aligned_cols=75  Identities=16%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHG  450 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~g  450 (549)
                      .||++||+++|+...-..+|...+||.+.-.||.+..+|+..++.+++...-|+    ++|+|+..||.+|+.++.+-.
T Consensus        13 rfp~aRiKKIMQ~dEdIGKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt----~s~~hlkq~v~~~~~FdFLk~   87 (224)
T KOG1659|consen   13 RFPPARIKKIMQSDEDIGKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKT----VSSSHLKQAVESDPKFDFLKE   87 (224)
T ss_pred             cCCHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccc----cCHHHHHHHHhccchhHHHHH
Confidence            499999999999988889999999999999999999999999999999888777    999999999999999888764

>PLN00035 histone H4; Provisional

Probab=97.84  E-value=1.4e-05  Score=71.36  Aligned_cols=86  Identities=27%  Similarity=0.389  Sum_probs=70.4

Q ss_pred             ccCCCCCCCC----CCcc---CCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393         207 MSGRGKGGKA----KAKS---KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN  279 (549)
Q Consensus       207 MSgrgk~gk~----~~k~---~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~  279 (549)
                      |||+||++|.    ..++   ..+.+-++  +|..-|.|+.+.+. ..|||..+-..+..+||.+..+|+.-|...|...
T Consensus         1 m~~~~k~~~g~g~~g~kr~~k~~~d~i~~--ipk~~IrRLARr~G-vkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA   77 (103)
T PLN00035          1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKIFLENVIRDAVTYTEHA   77 (103)
T ss_pred             CCCCCCCCCCCCCCcchHHHHHHHhhhcc--CCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888885432    1122   23334455  77778999999976 7899999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhhcC
Q psy7393         280 KKTRIIPRHLQLAIRN  295 (549)
Q Consensus       280 kkkRITPrHI~lAI~N  295 (549)
                      +++.|+.++|.+|++.
T Consensus        78 ~RKTV~~~DV~~Alkr   93 (103)
T PLN00035         78 RRKTVTAMDVVYALKR   93 (103)
T ss_pred             CCCcCcHHHHHHHHHH
Confidence            9999999999998763

>PTZ00015 histone H4; Provisional

Probab=97.36  E-value=0.00062  Score=60.95  Aligned_cols=72  Identities=21%  Similarity=0.245  Sum_probs=60.8

Q ss_pred             CCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         363 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       363 ~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ..+.+-.|  +|..-|.|+.+++. ..|||.++...+..+||.+..+|+.-|...|+..++|.    |+.++|.+|+..
T Consensus        23 ~~r~~i~g--I~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKT----Vt~~DV~~AlKr   94 (102)
T PTZ00015         23 VLRDNIRG--ITKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKT----VTAMDVVYALKR   94 (102)
T ss_pred             HHhhcccC--CCHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccHHHHHHHHHh
Confidence            34444556  55568999999963 78999999999999999999999999999999888776    999999999754

>PTZ00015 histone H4; Provisional

Probab=97.26  E-value=0.00041  Score=62.08  Aligned_cols=69  Identities=17%  Similarity=0.310  Sum_probs=59.9

Q ss_pred             ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         223 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       223 rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      +.+-.|  +|..-|.|+.+.+. +.|||..+-..+..+||.+..+|+.-|...|...+++.|+.++|.+|++
T Consensus        25 r~~i~g--I~k~~IrRLarr~G-vkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK   93 (102)
T PTZ00015         25 RDNIRG--ITKGAIRRLARRGG-VKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALK   93 (102)
T ss_pred             hhcccC--CCHHHHHHHHHHcC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence            344445  45556999999964 6899999999999999999999999999999999999999999999875

>smart00803 TAF TATA box binding protein associated factor

Probab=97.01  E-value=0.0012  Score=54.38  Aligned_cols=64  Identities=22%  Similarity=0.267  Sum_probs=58.8

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+|..-|+|+.+.... .||+..+...|+-.+||...+|+.-|.+.++..++++++++||..|++
T Consensus         2 ~~p~~~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803        2 WLPKETIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             CCCHHHHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            4788889999999764 599999999999999999999999999999999999999999999864

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>smart00803 TAF TATA box binding protein associated factor

Probab=96.76  E-value=0.004  Score=51.29  Aligned_cols=64  Identities=23%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .+|..-|.|+.+.+. ..||+..+...|+-.+||...||++-|.+.++..|+++    ++++||..|++
T Consensus         2 ~~p~~~i~ria~~~G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRkt----lt~~DI~~Alk   65 (65)
T smart00803        2 WLPKETIKDVAESLG-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTT----LTTSDIDSALR   65 (65)
T ss_pred             CCCHHHHHHHHHHCC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe----ecHHHHHHHhC
Confidence            478889999999965 45999999999999999999999999999999999887    99999998863

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=96.50  E-value=0.0027  Score=55.86  Aligned_cols=66  Identities=30%  Similarity=0.418  Sum_probs=59.6

Q ss_pred             cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+-+|+.=|.|+||+.. ..||+.+|-..|.-++|-+..+|.+.|...|...|++.|++++|++|+.
T Consensus        17 ~~~Lp~apv~Ri~r~~~-~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~   82 (91)
T COG2036          17 DLLLPKAPVRRILRKAG-AERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK   82 (91)
T ss_pred             hhhcCchHHHHHHHHHh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence            45677777999999943 4599999999999999999999999999999999999999999999975

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=96.40  E-value=0.004  Score=54.84  Aligned_cols=67  Identities=31%  Similarity=0.333  Sum_probs=59.2

Q ss_pred             ccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         370 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       370 gLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      .+-+|+-=|.|++|+. -..||+++|...|.-++|-+..+|.|.|...|..-++|.    |++++|++|+..
T Consensus        17 ~~~Lp~apv~Ri~r~~-~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKT----V~~~DI~la~~~   83 (91)
T COG2036          17 DLLLPKAPVRRILRKA-GAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKT----VKAEDIKLALKR   83 (91)
T ss_pred             hhhcCchHHHHHHHHH-hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----ecHHHHHHHHHH
Confidence            4567888899999994 345999999999999999999999999999999888776    999999999853

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=96.29  E-value=0.0082  Score=52.22  Aligned_cols=70  Identities=24%  Similarity=0.277  Sum_probs=60.9

Q ss_pred             cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      +.+-+|  +|..-|.|+.+++. ..|||.++-.-+..++|.+..+|+.-|...|+..++|.    |+++++.+|+..
T Consensus         8 ~~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKT----Vt~~DV~~alkr   77 (85)
T cd00076           8 RDNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKT----VTAMDVVYALKR   77 (85)
T ss_pred             HHhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CcHHHHHHHHHH
Confidence            344455  66778999999975 78999999999999999999999999999999888886    999999999854

>KOG1657|consensus

Probab=95.92  E-value=0.0067  Score=61.41  Aligned_cols=79  Identities=19%  Similarity=0.287  Sum_probs=72.6

Q ss_pred             ccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcC
Q psy7393         227 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSG  305 (549)
Q Consensus       227 AGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~  305 (549)
                      ....||.+||+++||......-|+..|||.++-+.|++..|+-..+...+..++++.+.-.||..|+.+.+-+++|.-.
T Consensus        71 ~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~Di  149 (236)
T KOG1657|consen   71 KNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLRDI  149 (236)
T ss_pred             hhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccceecc
Confidence            3567999999999999999999999999999999999999999999999999988888889999999999998888743

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=95.85  E-value=0.013  Score=51.02  Aligned_cols=69  Identities=19%  Similarity=0.300  Sum_probs=61.0

Q ss_pred             cccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         224 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       224 SsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      .+-+|  +|..-|.|+.+.+. ..|||..+-.-+..+||.+..+|+.-|...|...+++.|++++|.+|++.
T Consensus         9 ~~~~g--i~k~~I~RLarr~G-vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr   77 (85)
T cd00076           9 DNIKG--ITKPAIRRLARRGG-VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR   77 (85)
T ss_pred             Hhhcc--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            34455  56667999999976 78999999999999999999999999999999999999999999998763

>smart00417 H4 Histone H4

Probab=95.41  E-value=0.022  Score=48.45  Aligned_cols=66  Identities=17%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             cccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393         224 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA  292 (549)
Q Consensus       224 SsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA  292 (549)
                      .+-.|  +|..-|.|+.+.+. +.|||..+-..+..+||.+..+|+..|...|...+++.|+.+++..|
T Consensus         9 d~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a   74 (74)
T smart00417        9 DNIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA   74 (74)
T ss_pred             hhhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence            34446  45556999999975 68999999999999999999999999999999999999999998654

>smart00417 H4 Histone H4

Probab=95.33  E-value=0.026  Score=47.99  Aligned_cols=66  Identities=21%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHH
Q psy7393         365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQG  437 (549)
Q Consensus       365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLql  437 (549)
                      +.+-.|  +|..-|.|+++++. ..|||.++...+..+||.+..+|+.-|...|+..++|.    |+.+++..
T Consensus         8 ~d~i~g--I~k~~IrRLaRr~G-vkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKT----V~~~DV~~   73 (74)
T smart00417        8 RDNIQG--ITKPAIRRLARRGG-VKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKT----VTAMDVVY   73 (74)
T ss_pred             HhhhcC--CCHHHHHHHHHHcC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccHHHhee
Confidence            334445  55668999999974 67999999999999999999999999999999888776    89888754

>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]

Probab=95.17  E-value=0.028  Score=56.63  Aligned_cols=75  Identities=23%  Similarity=0.391  Sum_probs=69.8

Q ss_pred             ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      +.+|..||+++||.....+-|++.|||.++-+-|-+++|+--.|--.|..|++..+.-.+|..||...+-+++|+
T Consensus       108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLi  182 (286)
T COG5208         108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLI  182 (286)
T ss_pred             ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHh
Confidence            459999999999999888899999999999999999999999998888888888889999999999999888887

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.76  E-value=0.098  Score=43.66  Aligned_cols=66  Identities=18%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             chhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393         374 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE  443 (549)
Q Consensus       374 PVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe  443 (549)
                      +-..+..++++..-..|++.+|...|..+.|-+..+|++.|...|+..+++.    |.++++++++....
T Consensus         3 ~k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~t----v~~~Di~l~l~r~~   68 (72)
T cd07981           3 TKRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDT----LEVKDVQLHLERNW   68 (72)
T ss_pred             cHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHHhc
Confidence            3456788888876678999999999999999999999999999999988876    99999999987643

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.59  E-value=0.063  Score=44.83  Aligned_cols=64  Identities=17%  Similarity=0.278  Sum_probs=57.3

Q ss_pred             chhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         233 VGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       233 VsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      -..+..++++..-..|++..|...|..+.|-+..+|++.|...|+..|++.|.+++|++++..+
T Consensus         4 k~~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~   67 (72)
T cd07981           4 KRKLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN   67 (72)
T ss_pred             HHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence            3457778888666689999999999999999999999999999999999999999999998765

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.53  E-value=0.071  Score=46.33  Aligned_cols=63  Identities=25%  Similarity=0.419  Sum_probs=54.6

Q ss_pred             ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcC---Ccccchhhhhhhhc
Q psy7393         231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK---KTRIIPRHLQLAIR  294 (549)
Q Consensus       231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~k---kkRITPrHI~lAI~  294 (549)
                      ||-..++|++.. ...+.++....+.|+++-.-++.||+|.|...-...+   ...|.|+||+.|.+
T Consensus        17 f~k~~iKr~~~~-~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r   82 (85)
T cd08048          17 FPKAAIKRLIQS-VTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR   82 (85)
T ss_pred             ccHHHHHHHHHH-HcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence            777789999987 3458999999999999999999999999988865544   47899999999875

The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes

>KOG1657|consensus

Probab=93.72  E-value=0.1  Score=53.04  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=68.6

Q ss_pred             cccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccc
Q psy7393         369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDV  448 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L  448 (549)
                      ....||++||+++||......-|.+.|||.++-..|++..|+-..+...+.+++++-    +.=.|+..++.+.+-++.+
T Consensus        71 ~~~~lPlaRiKkimK~dedv~mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrt----l~~sdia~av~~s~~fdFL  146 (236)
T KOG1657|consen   71 KNHILPLARIKKIMKSDEDVSMITAEAPVLFAKACELFITELTLRSWVHTEENKRRT----LQKSDIAAAVTQSETFDFL  146 (236)
T ss_pred             hhccCcHhhccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhhccccccc----chHHHHHHHhccCCCccce
Confidence            456899999999999988888999999999999999999999888888888887774    5668888899988888877


Q ss_pred             cCC
Q psy7393         449 HGG  451 (549)
Q Consensus       449 ~gg  451 (549)
                      .--
T Consensus       147 ~Di  149 (236)
T KOG1657|consen  147 RDI  149 (236)
T ss_pred             ecc
Confidence            753

>smart00427 H2B Histone H2B

Probab=92.82  E-value=0.17  Score=44.66  Aligned_cols=60  Identities=22%  Similarity=0.282  Sum_probs=53.7

Q ss_pred             hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .|+|.||+-....-|++.|.-.|...+..+...|-.-|..-++.++++.|++++|+.|++
T Consensus         6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr   65 (89)
T smart00427        6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR   65 (89)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence            689999997777788899998899999999999998998989999999999999999987

>PLN00158 histone H2B; Provisional

Probab=92.11  E-value=0.24  Score=45.67  Aligned_cols=61  Identities=23%  Similarity=0.295  Sum_probs=54.6

Q ss_pred             hhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         234 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       234 sRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      ..|+|.|++-....-|++.|.-.|...+..++..|...|...|+-+++..|++++||.||+
T Consensus        31 ~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr   91 (116)
T PLN00158         31 IYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR   91 (116)
T ss_pred             HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence            4799999997777788888988899999999999998999999999999999999999987

>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex

Probab=90.95  E-value=0.22  Score=43.91  Aligned_cols=64  Identities=20%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393         231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR  294 (549)
Q Consensus       231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~  294 (549)
                      ||=+.|+|++..-.-.+-|+....+.++++--.++.||+|.|....... ....|.|.||..|.+
T Consensus        24 ~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r   88 (90)
T PF04719_consen   24 FNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR   88 (90)
T ss_dssp             --HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence            7777899999993322799999999999999999999999998886543 345899999998864

The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.

>PTZ00463 histone H2B; Provisional

Probab=90.67  E-value=0.42  Score=44.15  Aligned_cols=60  Identities=13%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      +|++.|++-....-|++.|.-.|...+.-++..|-..|...|+-+++..|++++||.|++
T Consensus        33 YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr   92 (117)
T PTZ00463         33 YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR   92 (117)
T ss_pred             HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence            699999997777788888888888888888888888888888889999999999999987

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=90.66  E-value=0.58  Score=49.48  Aligned_cols=78  Identities=22%  Similarity=0.224  Sum_probs=58.8

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHH--hCCcccccccCCCCcccceeecCCcc
Q psy7393         388 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAA--LTFERVDDVHGGDGLSLGVLGVGDGV  465 (549)
Q Consensus       388 a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI--~NDeEL~~L~gg~s~Sl~~li~ggGV  465 (549)
                      ..|++.+|...|+..+||-..+|++.|.+.++..|+++    ++++||..|+  .|.+.+.......++...+...+|+.
T Consensus        14 i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~----l~~~Di~~Al~~~n~eplyG~~~~~~~~~~~~~~~~~~   89 (343)
T cd08050          14 IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRK----LTTSDVNHALRLRNVEPLYGFSSSEPLPFRVSTGGGQE   89 (343)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----CCHHHHHHHHHHhCCCcccCCCCCccccceeccCCCce
Confidence            56999999999999999999999999999999999987    9999999997  44454444443344433333444444


Q ss_pred             cccc
Q psy7393         466 ADHV  469 (549)
Q Consensus       466 ~p~I  469 (549)
                      +-++
T Consensus        90 l~~~   93 (343)
T cd08050          90 LYYV   93 (343)
T ss_pred             EeeC
Confidence            4443

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=90.57  E-value=0.74  Score=42.05  Aligned_cols=60  Identities=17%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      -|+++|++. -..+++..++..|.-.++-.+.+|+.-|...|+..+++.    |+.++|.+||..
T Consensus         6 ~v~~iLk~~-Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~t----V~~eDV~lAi~~   65 (117)
T cd07979           6 VIAAILKSM-GITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKAN----IDADDVKLAIQS   65 (117)
T ss_pred             HHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHH
Confidence            588999984 256999999999999999999999999999999888876    999999999976

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]

Probab=90.35  E-value=0.33  Score=49.14  Aligned_cols=75  Identities=24%  Similarity=0.329  Sum_probs=63.4

Q ss_pred             cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccccc
Q psy7393         371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVH  449 (549)
Q Consensus       371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~  449 (549)
                      +.+|..||++.||...-..=|++.|||.+|-+-|-+++|+--.|--.|+.||+..    +.-.+|.-|+..-+-++.++
T Consensus       108 h~LPlARIkkvMKtdedVkMisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRt----LQksDia~Av~kSeMfDFLi  182 (286)
T COG5208         108 HNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRT----LQKSDIAAAVKKSEMFDFLI  182 (286)
T ss_pred             ccCcHHHHHHHHhcccchhheecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhH----HHHHHHHHHHHHHHHHhHHh
Confidence            4589999999999876677899999999999999999999888977788777664    67788888988877666655

>PLN00158 histone H2B; Provisional

Probab=90.27  E-value=1  Score=41.67  Aligned_cols=65  Identities=20%  Similarity=0.272  Sum_probs=51.5

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      .|.+ .|++.||.-.....|++.|--.+...+..+...|-.-|...++.++++.    |++++||-|++-
T Consensus        28 sy~~-YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~T----ltsrEIqtAvrL   92 (116)
T PLN00158         28 TYKI-YIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPT----VTSREIQTAVRL   92 (116)
T ss_pred             cHHH-HHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc----CCHHHHHHHHHH
Confidence            3443 7999999866566777777777888888888888888888888887775    999999999864

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=90.19  E-value=0.48  Score=43.27  Aligned_cols=61  Identities=18%  Similarity=0.129  Sum_probs=54.4

Q ss_pred             hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      -|+++|++.. ..+++..++..|.-.++-.+.+|+.-|...|+..+++.|+.++|++||..-
T Consensus         6 ~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r   66 (117)
T cd07979           6 VIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSR   66 (117)
T ss_pred             HHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4788999843 458999999999999999999999999999999999999999999999754

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>PTZ00463 histone H2B; Provisional

Probab=89.80  E-value=1.2  Score=41.28  Aligned_cols=64  Identities=9%  Similarity=0.143  Sum_probs=47.9

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      |.+ .|++.||.-....-|+..|--.+...+.=+...|-..|...|+.+++..    |++++||-|++-
T Consensus        30 y~~-YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~T----ltsrEIQtAvrL   93 (117)
T PTZ00463         30 YGL-YIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDT----LSSREIQTAIRL   93 (117)
T ss_pred             HHH-HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CCHHHHHHHHhh
Confidence            443 6999999865556777777666666666666666667777778777776    999999999864

>KOG3219|consensus

Probab=89.38  E-value=0.28  Score=48.69  Aligned_cols=66  Identities=21%  Similarity=0.371  Sum_probs=55.3

Q ss_pred             cccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393         228 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR  294 (549)
Q Consensus       228 GLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~  294 (549)
                      .--||=+.|+|+|..-. .+-|+..+.|+++++=.-++-||+|.|..+.... ....+.|.||+.|.+
T Consensus       110 rs~f~Ka~iKkL~~~it-g~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~r  176 (195)
T KOG3219|consen  110 RSAFPKAQIKKLMSSIT-GQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYR  176 (195)
T ss_pred             HhcCCHHHHHHHHHHHh-CCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence            34599999999999943 3449999999999999999999999998885443 456799999998875

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=89.34  E-value=0.66  Score=38.77  Aligned_cols=63  Identities=21%  Similarity=0.285  Sum_probs=46.4

Q ss_pred             ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      ||..-|+.+-..-.. ..++..+.-+|+-=+||-..||+.-|.+.++..+++++|+.||+.|++
T Consensus         4 ~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen    4 FSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             --HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             CCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            555555555444332 357888999999999999999999999999999999999999999874

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=88.78  E-value=0.48  Score=50.10  Aligned_cols=57  Identities=23%  Similarity=0.342  Sum_probs=51.2

Q ss_pred             ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc--CcHHHHhh
Q psy7393         246 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR--NDEELNKL  302 (549)
Q Consensus       246 a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~--NDeEL~~L  302 (549)
                      ..|++..|...|+..+||...+|++.|.+.++..|+++++++||+.|++  |.+.+...
T Consensus        14 i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~   72 (343)
T cd08050          14 IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGF   72 (343)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCC
Confidence            4599999999999999999999999999999999999999999999977  55555544

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=88.18  E-value=1.8  Score=37.68  Aligned_cols=66  Identities=18%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      ||-..|+|++..- ..+.++.+..+.++++-.-++.||.|.|..+-....... ..-|.|+||+-|.+
T Consensus        17 f~k~~iKr~~~~~-~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~-~~Pl~P~HireA~r   82 (85)
T cd08048          17 FPKAAIKRLIQSV-TGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEAN-TGPLQPRHLREAYR   82 (85)
T ss_pred             ccHHHHHHHHHHH-cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCCCcHHHHHHHH
Confidence            7777899998873 458999999999999999999999999999876544310 01499999999875

The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes

>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex

Probab=88.16  E-value=0.99  Score=39.87  Aligned_cols=64  Identities=17%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             cchhhhhHhhhcCCcc-ccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         373 FPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya-~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      ||=..|++++..- .. +-|+....+.++++-..+..||.|.|-.+........   .|.|.|+.-|.+
T Consensus        24 ~~k~~ikkli~~~-~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~---pl~P~hlreA~r   88 (90)
T PF04719_consen   24 FNKAAIKKLINQV-LGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETG---PLQPDHLREAYR   88 (90)
T ss_dssp             --HHHHHHHHHHH-HS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--S---S--HHHHHHHHH
T ss_pred             CCHHHHHHHHHHH-cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHHHHHHH
Confidence            7778899999983 34 7899999999999999999999999999877555442   599999998864

The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.

>KOG3219|consensus

Probab=86.76  E-value=0.87  Score=45.33  Aligned_cols=68  Identities=18%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393         371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF  442 (549)
Q Consensus       371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND  442 (549)
                      -.||-+.|++++..- ..+-|+..+.|.++++-.-++.||.|.|..+....+...   -+-|.||..|.+..
T Consensus       111 s~f~Ka~iKkL~~~i-tg~~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~---PLqP~HIREA~rrL  178 (195)
T KOG3219|consen  111 SAFPKAQIKKLMSSI-TGQSVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESG---PLQPKHIREAYRRL  178 (195)
T ss_pred             hcCCHHHHHHHHHHH-hCCccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCC---CCCcHHHHHHHHHH
Confidence            459999999999984 233489999999999999999999999999887555443   59999999998653

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=86.47  E-value=2.5  Score=35.36  Aligned_cols=64  Identities=22%  Similarity=0.258  Sum_probs=46.5

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .||..-|+.+-..-.. ..++..+.-+||-=+||-..||++-|.+..+..|+++    +|+.||..|++
T Consensus         3 ~~~~esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~----Lt~~Di~~ALr   66 (66)
T PF02969_consen    3 VFSQESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTK----LTTDDINSALR   66 (66)
T ss_dssp             ---HHHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS----B-HHHHHHHH-
T ss_pred             cCCHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCHHHHHHHhC
Confidence            3566666655555322 3578899999999999999999999999999999997    99999999864

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>smart00427 H2B Histone H2B

Probab=85.17  E-value=2.7  Score=37.22  Aligned_cols=61  Identities=20%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      .|+|.||.-....-|++.|--.+...+..+...|-.-|..-++.+||+.    |++++||-|++-
T Consensus         6 Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~T----ltsreIqtAvrl   66 (89)
T smart00427        6 YIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKST----LSSREIQTAVRL   66 (89)
T ss_pred             HHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc----CCHHHHHHHHHH
Confidence            5889999865556778888777888888888888888888888887775    999999999864

>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex

Probab=82.60  E-value=3.5  Score=34.99  Aligned_cols=61  Identities=20%  Similarity=0.229  Sum_probs=47.3

Q ss_pred             cchhhhhhhhcC--CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcc-cchhhhhhh
Q psy7393         232 PVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR-IIPRHLQLA  292 (549)
Q Consensus       232 PVsRI~RlLke~--~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkR-ITPrHI~lA  292 (549)
                      |..-|.|+|+..  ...-||+..|--.++..|+-++.|-+-+|...|++.+... |.++||+..
T Consensus         1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki   64 (72)
T PF09415_consen    1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI   64 (72)
T ss_dssp             -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred             ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            344567777752  2446999999999999999999999999999999998888 999999863

The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.

>smart00428 H3 Histone H3

Probab=80.99  E-value=3.5  Score=37.43  Aligned_cols=67  Identities=19%  Similarity=0.177  Sum_probs=54.8

Q ss_pred             ccccchhhhhHhhhcC--Cc----cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         370 GLQFPVGRIHRLLRKG--NY----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       370 gLqFPVgRI~R~Lk~g--~y----a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      +|-+|-.-+.|+.++-  .+    ..|++++|...|-...|....+++|-|...|...|++.    |+|+++++|.+
T Consensus        27 ~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvT----l~~kDi~La~r   99 (105)
T smart00428       27 DLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVT----IMPKDIQLARR   99 (105)
T ss_pred             ccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----CcHhhHHHHHH
Confidence            5667766677777652  22    35999999999999999999999999999888888776    89999999853

>smart00428 H3 Histone H3

Probab=80.01  E-value=2.5  Score=38.39  Aligned_cols=67  Identities=25%  Similarity=0.310  Sum_probs=55.7

Q ss_pred             cccccchhhhhhhhcC--Cc----ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         228 GLQFPVGRIHRLLRKG--NY----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       228 GLqFPVsRI~RlLke~--~y----a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      +|-+|-.-|.|+.++-  .+    ..|++++|...|-.+.|....++.|-|..-|...|+..|+|+++++|.+
T Consensus        27 ~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r   99 (105)
T smart00428       27 DLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR   99 (105)
T ss_pred             ccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence            5667766677776661  12    3599999999999999999999999998889888999999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	549
2nqb_C	123	Drosophila Nucleosome Structure Length = 123		4e-47
2nqb_C	123	Drosophila Nucleosome Structure Length = 123		5e-26
2pyo_C	120	Drosophila Nucleosome Core Length = 120		5e-47
2pyo_C	120	Drosophila Nucleosome Core Length = 120		5e-26
1eqz_A	129	X-Ray Structure Of The Nucleosome Core Particle At		1e-44
1eqz_A	129	X-Ray Structure Of The Nucleosome Core Particle At		9e-25
2hio_A	128	Histone Octamer (Chicken), Chromosomal Protein Leng		1e-44
2hio_A	128	Histone Octamer (Chicken), Chromosomal Protein Leng		9e-25
3c1b_C	129	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		3e-44
3c1b_C	129	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		4e-25
1zbb_C	129	Structure Of The 4_601_167 Tetranucleosome Length =		3e-44
1zbb_C	129	Structure Of The 4_601_167 Tetranucleosome Length =		4e-25
1m18_C	129	Ligand Binding Alters The Structure And Dynamics Of		3e-44
1m18_C	129	Ligand Binding Alters The Structure And Dynamics Of		5e-25
3a6n_C	133	The Nucleosome Containing A Testis-Specific Histone		4e-44
3a6n_C	133	The Nucleosome Containing A Testis-Specific Histone		2e-24
2cv5_C	130	Crystal Structure Of Human Nucleosome Core Particle		4e-44
2cv5_C	130	Crystal Structure Of Human Nucleosome Core Particle		2e-24
2f8n_K	149	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		5e-44
2f8n_K	149	2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nuc		2e-24
1aoi_C	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		1e-43
1aoi_C	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		1e-24
1s32_C	119	Molecular Recognition Of The Nucleosomal 'supergroo		1e-43
1s32_C	119	Molecular Recognition Of The Nucleosomal 'supergroo		1e-24
3kwq_C	107	Structural Characterization Of H3k56q Nucleosomes A		1e-43
3kwq_C	107	Structural Characterization Of H3k56q Nucleosomes A		1e-24
1kx3_C	128	X-Ray Structure Of The Nucleosome Core Particle, Nc		1e-43
1kx3_C	128	X-Ray Structure Of The Nucleosome Core Particle, Nc		1e-24
1zla_C	129	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		7e-43
1zla_C	129	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		1e-23
1hio_A	95	Histone Octamer (Chicken), Chromosomal Protein, Alp		8e-42
1hio_A	95	Histone Octamer (Chicken), Chromosomal Protein, Alp		1e-24
1id3_C	131	Crystal Structure Of The Yeast Nucleosome Core Part		2e-41
1id3_C	131	Crystal Structure Of The Yeast Nucleosome Core Part		7e-23
2xql_A	91	Fitting Of The H2a-H2b Histones In The Electron Mic		2e-39
2xql_A	91	Fitting Of The H2a-H2b Histones In The Electron Mic		1e-24
1u35_C	120	Crystal Structure Of The Nucleosome Core Particle C		1e-29
1u35_C	120	Crystal Structure Of The Nucleosome Core Particle C		2e-14
1f66_C	128	2.6 A Crystal Structure Of A Nucleosome Core Partic		3e-25
1f66_C	128	2.6 A Crystal Structure Of A Nucleosome Core Partic		1e-12
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		2e-24
2jss_A	192	Nmr Structure Of Chaperone Chz1 Complexed With Hist		3e-12
1q9c_A	191	Crystal Structure Of The Histone Domain Of Son Of S		9e-05
1q9c_A	191	Crystal Structure Of The Histone Domain Of Son Of S		4e-04
3ksy_A	1049	Crystal Structure Of The Histone Domain, Dh-Ph Unit		2e-04

>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score =  186 bits (471), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 92/93 (98%), Positives = 92/93 (98%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22  LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 82  LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 114

>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure Length = 123

Iteration: 1
 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/57 (98%), Positives = 56/57 (98%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 
Sbjct: 20  AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 76

>pdb|2PYO|C Chain C, Drosophila Nucleosome Core Length = 120

Iteration: 1
 Score =  185 bits (470), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/93 (98%), Positives = 92/93 (98%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH
Sbjct: 22  LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 81
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 82  LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 114

>pdb|2PYO|C Chain C, Drosophila Nucleosome Core Length = 120

Iteration: 1
 Score =  115 bits (289), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/57 (98%), Positives = 56/57 (98%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 
Sbjct: 20  AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR 76

>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 129

Iteration: 1
 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/93 (92%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 84  LQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 116

>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A Resolution Length = 129

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 22  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 78

>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein Length = 128

Iteration: 1
 Score =  177 bits (449), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 86/93 (92%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 83  LQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 115

>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein Length = 128

Iteration: 1
 Score =  111 bits (278), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 77

>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 129

Iteration: 1
 Score =  176 bits (447), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 83  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 115

>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 129

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 77

>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome Length = 129

Iteration: 1
 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 83  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 115

>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome Length = 129

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 77

>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 129

Iteration: 1
 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 83  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 115

>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 129

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 77

>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 133

Iteration: 1
 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 27  LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 86
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 319
           LQLAIRNDEELNKLL  VTIAQGGVLPNIQA
Sbjct: 87  LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 117

>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 133

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 55/56 (98%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 424
           AGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT
Sbjct: 25  AGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT 80

>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle Length = 130

Iteration: 1
 Score =  176 bits (445), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 85/93 (91%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 24  LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 83
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 84  LQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVL 116

>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle Length = 130

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 55/56 (98%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 424
           AGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT
Sbjct: 22  AGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT 77

>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 149

Iteration: 1
 Score =  175 bits (444), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 88/91 (96%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 43  LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 102
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQA 319
           LQLAIRNDEELNKLL  VTIAQGGVLPNIQA
Sbjct: 103 LQLAIRNDEELNKLLGRVTIAQGGVLPNIQA 133

>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a Nucleosomes Length = 149

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 55/56 (98%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 424
           AGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT
Sbjct: 41  AGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKT 96

>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 20  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 79
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 80  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 112

>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 18  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 74

>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 119

Iteration: 1
 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 83  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 115

>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove' Length = 119

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 77

>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 107

Iteration: 1
 Score =  174 bits (442), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 10  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 69
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 70  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 102

>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 107

Iteration: 1
 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 8   AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 64

>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 128

Iteration: 1
 Score =  174 bits (441), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/93 (90%), Positives = 89/93 (95%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 83  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 115

>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 128

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 77

>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 129

Iteration: 1
 Score =  171 bits (434), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/93 (88%), Positives = 87/93 (93%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGN  RDNKKTRIIPRH
Sbjct: 23  LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNWERDNKKTRIIPRH 82
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLA+RNDEELNKLL  VTIAQGGVLPNIQ+ L
Sbjct: 83  LQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVL 115

>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 129

Iteration: 1
 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 53/57 (92%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGN  RDNKKT 
Sbjct: 21  AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNWERDNKKTR 77

>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 95

Iteration: 1
 Score =  168 bits (425), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 81/87 (93%), Positives = 84/87 (96%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9   LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLP 315
           LQLAIRNDEELNKLL  VTIAQGGVLP
Sbjct: 69  LQLAIRNDEELNKLLGKVTIAQGGVLP 95

>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 95

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 7   AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 63

>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 131

Iteration: 1
 Score =  166 bits (421), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 86/93 (92%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           L FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAAE+LELAGNAARDNKKTRIIPRH
Sbjct: 24  LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRH 83
Query: 289 LQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           LQLAIRND+ELNKLL  VTIAQGGVLPNI   L
Sbjct: 84  LQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNL 116

>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 131

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 47/56 (83%), Positives = 54/56 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 424
           AGL FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAAE+LELAGNAARDNKKT
Sbjct: 22  AGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKT 77

>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 91

Iteration: 1
 Score =  160 bits (404), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/83 (92%), Positives = 80/83 (96%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           LQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKTRIIPRH
Sbjct: 9   LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRH 68
Query: 289 LQLAIRNDEELNKLLSGVTIAQG 311
           LQLAIRNDEELNKLL  VTIAQG
Sbjct: 69  LQLAIRNDEELNKLLGKVTIAQG 91

>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b Histones (1:5). Length = 91

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/57 (91%), Positives = 55/57 (96%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH 425
           AGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARDNKKT 
Sbjct: 7   AGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR 63

>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 120

Iteration: 1
 Score =  128 bits (321), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/94 (67%), Positives = 76/94 (80%)
Query: 231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQ 290
           FPVGR+ R ++KG+   R+G GAPVY+AAV+EYL AE+LELA NAARDNKK R+ PRH+ 
Sbjct: 23  FPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHIL 82
Query: 291 LAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAE 324
           LA+ NDEELN+LL GVTIA GGVLPNI   L A+
Sbjct: 83  LAVANDEELNQLLKGVTIASGGVLPNIHPELLAK 116

>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle Containing The Histone Domain Of Macroh2a Length = 120

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 46/55 (83%)
Query: 369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
           AG+ FPVGR+ R ++KG+   R+G GAPVY+AAV+EYL AE+LELA NAARDNKK
Sbjct: 19  AGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKK 73

>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 128

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 70/94 (74%), Gaps = 2/94 (2%)
Query: 229 LQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 287
           LQFPVGRIHR L+    +  RVGA A VY AA++EYL AEVLELAGNA++D K  RI PR
Sbjct: 26  LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR 85
Query: 288 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           HLQLAIR DEEL+ L+   TIA GGV+P+I   L
Sbjct: 86  HLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSL 118

>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 128

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Query: 369 AGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 422
           AGLQFPVGRIHR L+    +  RVGA A VY AA++EYL AEVLELAGNA++D K
Sbjct: 24  AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 78

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 68/90 (75%), Gaps = 2/90 (2%)
Query: 229 LQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR 287
           LQFPVGRI R L++      RVG+ A +YL AV+EYL AEVLELAGNAA+D K  RI PR
Sbjct: 104 LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPR 163
Query: 288 HLQLAIRNDEELNKLLSGVTIAQGGVLPNI 317
           HLQLAIR D+EL+ L+   TIA GGVLP+I
Sbjct: 164 HLQLAIRGDDELDSLIRA-TIASGGVLPHI 192

>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone H2a.Z-H2b Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
Query: 369 AGLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 422
           AGLQFPVGRI R L++      RVG+ A +YL AV+EYL AEVLELAGNAA+D K
Sbjct: 102 AGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLK 156

>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of Sevenless Length = 191

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           L  PV +IH LL++     ++     VY+ AV+EY++A++L+LAGN  R+ +   I  + 
Sbjct: 103 LSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQD 161
Query: 289 LQLAIRNDEEL 299
           +++A   D+ L
Sbjct: 162 IKVAXCADKVL 172

>pdb|1Q9C|A Chain A, Crystal Structure Of The Histone Domain Of Son Of Sevenless Length = 191

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 420
           L  PV +IH LL++     ++     VY+ AV+EY++A++L+LAGN  R+
Sbjct: 103 LSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRN 151

>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRH 288
           L  PV +IH LL++     ++     VY+ AV+EY++A++L+L GN  R+ +   I  + 
Sbjct: 103 LSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQD 161
Query: 289 LQLAIRNDEEL 299
           +++A+  D+ L
Sbjct: 162 IKVAMCADKVL 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	549
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	1e-50
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	3e-25
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	6e-50
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	2e-25
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	2e-48
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	2e-26
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	2e-45
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	5e-22
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	3e-43
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	2e-20
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	5e-39
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	5e-19
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	6e-27
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	3e-22
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	1e-14
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	7e-10
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	2e-04
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	2e-08
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	1e-05
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	2e-05

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Length = 149

 Score =  170 bits (430), Expect = 1e-50
 Identities = 105/125 (84%), Positives = 114/125 (91%), Gaps = 1/125 (0%)

Query: 198 AVPIPQIYTMSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVY 256
           +  +    +MSGRGK GGKA+AK+KTRSSRAGLQFPVGR+HRLLRKGNY+ERVGAGAPVY
Sbjct: 11  SSGLVPRGSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVY 70

Query: 257 LAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPN 316
           LAAV+EYL AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  VTIAQGGVLPN
Sbjct: 71  LAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPN 130

Query: 317 IQAGL 321
           IQA L
Sbjct: 131 IQAVL 135

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Length = 149

 Score =  100 bits (250), Expect = 3e-25
 Identities = 67/79 (84%), Positives = 74/79 (93%), Gaps = 1/79 (1%)

Query: 348 TMSGRGK-GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYL 406
           +MSGRGK GGK + K+KTRSSRAGLQFPVGR+HRLLRKGNY+ERVGAGAPVYLAAV+EYL
Sbjct: 19  SMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYL 78

Query: 407 AAEVLELAGNAARDNKKTH 425
            AE+LELAGNAARDNKKT 
Sbjct: 79  TAEILELAGNAARDNKKTR 97

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Length = 129

 Score =  167 bits (423), Expect = 6e-50
 Identities = 105/116 (90%), Positives = 111/116 (95%), Gaps = 1/116 (0%)

Query: 207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 265
           MSGRGK GGKA+AK+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 266 AEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           AE+LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 116

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Length = 129

 Score =  100 bits (249), Expect = 2e-25
 Identities = 67/78 (85%), Positives = 73/78 (93%), Gaps = 1/78 (1%)

Query: 349 MSGRGK-GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLA 407
           MSGRGK GGK + K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL 
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 408 AEVLELAGNAARDNKKTH 425
           AE+LELAGNAARDNKKT 
Sbjct: 61  AEILELAGNAARDNKKTR 78

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Length = 123

 Score =  163 bits (412), Expect = 2e-48
 Identities = 108/114 (94%), Positives = 111/114 (97%)

Query: 208 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 267
           SGRGKGGK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE
Sbjct: 1   SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 60

Query: 268 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQA L
Sbjct: 61  VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVL 114

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Length = 123

 Score =  103 bits (256), Expect = 2e-26
 Identities = 70/76 (92%), Positives = 73/76 (96%)

Query: 350 SGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 409
           SGRGKGGK K K+K+RS+RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE
Sbjct: 1   SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAE 60

Query: 410 VLELAGNAARDNKKTH 425
           VLELAGNAARDNKKT 
Sbjct: 61  VLELAGNAARDNKKTR 76

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Length = 120

 Score =  155 bits (391), Expect = 2e-45
 Identities = 73/115 (63%), Positives = 90/115 (78%), Gaps = 2/115 (1%)

Query: 207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
           MS RG  GK K+   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAV+EYL A
Sbjct: 1   MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTA 58

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           E+LELA NAARDNKK R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI   L
Sbjct: 59  EILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPEL 113

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Length = 120

 Score = 90.7 bits (224), Expect = 5e-22
 Identities = 46/77 (59%), Positives = 59/77 (76%), Gaps = 2/77 (2%)

Query: 349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 408
           MS RG  GK K+   +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAV+EYL A
Sbjct: 1   MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTA 58

Query: 409 EVLELAGNAARDNKKTH 425
           E+LELA NAARDNKK  
Sbjct: 59  EILELAVNAARDNKKGR 75

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Length = 131

 Score =  149 bits (376), Expect = 3e-43
 Identities = 88/115 (76%), Positives = 101/115 (87%), Gaps = 1/115 (0%)

Query: 208 SGRG-KGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 266
            G+G K G A   S++RS++AGL FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAA
Sbjct: 2   GGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAA 61

Query: 267 EVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           E+LELAGNAARDNKKTRIIPRHLQLAIRND+ELNKLL  VTIAQGGVLPNI   L
Sbjct: 62  EILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNL 116

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Length = 131

 Score = 86.9 bits (214), Expect = 2e-20
 Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 1/77 (1%)

Query: 350 SGRG-KGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAA 408
            G+G K G     S++RS++AGL FPVGR+HRLLR+GNYA+R+G+GAPVYL AV+EYLAA
Sbjct: 2   GGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAA 61

Query: 409 EVLELAGNAARDNKKTH 425
           E+LELAGNAARDNKKT 
Sbjct: 62  EILELAGNAARDNKKTR 78

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Length = 128

 Score =  138 bits (347), Expect = 5e-39
 Identities = 72/119 (60%), Positives = 85/119 (71%), Gaps = 5/119 (4%)

Query: 207 MSGRGKG---GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVME 262
           M+G   G   GKAK K+ +RS RAGLQFPVGRIHR L+    +   VGA A VY AA++E
Sbjct: 1   MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60

Query: 263 YLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           YL AEVLELAGNA++D K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I   L
Sbjct: 61  YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSL 118

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Length = 128

 Score = 82.3 bits (202), Expect = 5e-19
 Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 4/81 (4%)

Query: 349 MSGRGKG---GKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVME 404
           M+G   G   GK KTK+ +RS RAGLQFPVGRIHR L+    +   VGA A VY AA++E
Sbjct: 1   MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60

Query: 405 YLAAEVLELAGNAARDNKKTH 425
           YL AEVLELAGNA++D K   
Sbjct: 61  YLTAEVLELAGNASKDLKVKR 81

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Length = 192

 Score =  106 bits (265), Expect = 6e-27
 Identities = 61/116 (52%), Positives = 79/116 (68%), Gaps = 2/116 (1%)

Query: 203 QIYTMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAER-VGAGAPVYLAAVM 261
            +   +       +  ++++ S+RAGLQFPVGRI R L++       VG+ A +YL AV+
Sbjct: 78  AVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVL 137

Query: 262 EYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI 317
           EYL AEVLELAGNAA+D K  RI PRHLQLAIR D+EL+ L+   TIA GGVLP+I
Sbjct: 138 EYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLI-RATIASGGVLPHI 192

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 98

 Score = 90.3 bits (224), Expect = 3e-22
 Identities = 14/77 (18%), Positives = 33/77 (42%)

Query: 222 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 281
           ++  +   +FP  RI ++++      +V A  PV ++  +E     +L+ A    +    
Sbjct: 3   SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNA 62

Query: 282 TRIIPRHLQLAIRNDEE 298
             +   HL+  I  + +
Sbjct: 63  KTMTTSHLKQCIELEGD 79

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 98

 Score = 69.2 bits (169), Expect = 1e-14
 Identities = 11/60 (18%), Positives = 26/60 (43%)

Query: 364 TRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
           ++  +   +FP  RI ++++      +V A  PV ++  +E     +L+ A    +    
Sbjct: 3   SKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNA 62

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 97

 Score = 55.0 bits (132), Expect = 7e-10
 Identities = 15/70 (21%), Positives = 31/70 (44%)

Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
           + P+ RI ++++     + + A APV  A   +    E+   A     DNK+  +    +
Sbjct: 19  ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDI 78

Query: 290 QLAIRNDEEL 299
            +AI   ++ 
Sbjct: 79  AMAITKFDQF 88

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 97

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 13/52 (25%), Positives = 24/52 (46%)

Query: 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKK 423
           + P+ RI ++++     + + A APV  A   +    E+   A     DNK+
Sbjct: 19  ELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 70

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score = 56.0 bits (134), Expect = 2e-08
 Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 216 AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNA 275
           A++  + R  R  L  PV +IH LL++     ++     VY+ AV+EY++A++L+L GN 
Sbjct: 90  AQSAIEKRKRRNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNY 148

Query: 276 ARDNKKTRIIPRHLQLAIRNDEEL 299
            R+ +   I  + +++A+  D+ L
Sbjct: 149 VRNIRHYEITKQDIKVAMCADKVL 172

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score = 47.1 bits (111), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAAR 419
           R  R  L  PV +IH LL++     ++     VY+ AV+EY++A++L+L GN  R
Sbjct: 97  RKRRNPLSLPVEKIHPLLKEVL-GYKIDHQVSVYIVAVLEYISADILKLVGNYVR 150

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Length = 140

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 8/88 (9%), Positives = 25/88 (28%), Gaps = 2/88 (2%)

Query: 214 GKAKAKSKTRSSRAG-LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELA 272
           G+ +++             P+ R+  +++       +       +    E     +   A
Sbjct: 2   GEPRSQPPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAA 61

Query: 273 GNAARDNKKTRII-PRHLQLAIRNDEEL 299
                  +    +   HL   +  ++ L
Sbjct: 62  YTEEFGQRPGEALKYEHLSQVVNKNKNL 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	549
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	100.0
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	100.0
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	100.0
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	100.0
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	100.0
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	100.0
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	100.0
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	100.0
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	100.0
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	100.0
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	100.0
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	100.0
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	100.0
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	99.97
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	99.83
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	99.83
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	99.75
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	99.71
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	99.57
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	99.54
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	99.52
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	99.48
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	99.46
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	99.42
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	99.42
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	99.4
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	99.37
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	99.36
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	99.25
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.76
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.33
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	98.14
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	98.14
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	98.06
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	97.85
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	97.78
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	97.72
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	97.68
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.52
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	97.41
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	97.31
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	97.14
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.07
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	96.79
1taf_B	70	TFIID TBP associated factor 62; transcription init	96.61
1taf_B	70	TFIID TBP associated factor 62; transcription init	96.33
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	96.31
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	96.29
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	95.45
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	95.45
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	95.41
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	95.34
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	95.31
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	95.31
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	95.06
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	94.98
1taf_A	68	TFIID TBP associated factor 42; transcription init	94.7
1taf_A	68	TFIID TBP associated factor 42; transcription init	94.6
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	93.24
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	93.24
1bh9_B	89	TAFII28; histone fold, tata binding protein, trans	91.56
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	91.12
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	90.47
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	89.97
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	89.87
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	89.67
3b0b_C	81	CENP-X, centromere protein X; histone fold, DNA bi	89.35
4dra_E	84	Centromere protein X; DNA binding complex, DNA dam	89.2
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	88.97
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	88.81
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	88.02
3r45_A	156	Histone H3-like centromeric protein A; histone fol	87.85
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	87.57
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	87.37
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	87.14
3r45_A	156	Histone H3-like centromeric protein A; histone fol	86.83
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	86.44
1bh9_B	89	TAFII28; histone fold, tata binding protein, trans	86.16
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	85.83
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	84.9
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	84.63
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	83.94
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	83.73
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	82.57
4dra_E	84	Centromere protein X; DNA binding complex, DNA dam	81.63
3b0b_C	81	CENP-X, centromere protein X; histone fold, DNA bi	80.77

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=100.00  E-value=4.2e-41  Score=301.21  Aligned_cols=119  Identities=62%  Similarity=0.949  Sum_probs=106.6

Q ss_pred             ccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccch
Q psy7393         207 MSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIP  286 (549)
Q Consensus       207 MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITP  286 (549)
                      |||+|  +|++++++|||+||||||||+||+||||+++|+.||+++|||||+||||||++||+|+|+|+|+++++++|+|
T Consensus         1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp   78 (120)
T 2f8n_G            1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTP   78 (120)
T ss_dssp             -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECH
T ss_pred             CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcH
Confidence            88876  5666788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCcHHHHhhhcCceeccccccCCccccccccccc
Q psy7393         287 RHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSI  327 (549)
Q Consensus       287 rHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~  327 (549)
                      +||++||+||+|||+||+++||++|||+|+||++|++||+.
T Consensus        79 ~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~  119 (120)
T 2f8n_G           79 RHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRG  119 (120)
T ss_dssp             HHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred             HHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence            99999999999999999999999999999999999999864

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=100.00  E-value=6.3e-41  Score=301.19  Aligned_cols=121  Identities=89%  Similarity=1.246  Sum_probs=105.2

Q ss_pred             cCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchh
Q psy7393         208 SGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR  287 (549)
Q Consensus       208 Sgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPr  287 (549)
                      ||+||++|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||+|+|+|+|+++++++|+|+
T Consensus         1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~   80 (123)
T 2nqb_C            1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPR   80 (123)
T ss_dssp             ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHH
T ss_pred             CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHH
Confidence            56777788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         288 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       288 HI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      ||++||+||+|||+||+++||++|||+|+||++|++||+..
T Consensus        81 hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~~  121 (123)
T 2nqb_C           81 HLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTEK  121 (123)
T ss_dssp             HHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSSCC---
T ss_pred             HHHHHHhccHHHHHHhcCceeCCCCcCCCccHHHcCccccc
Confidence            99999999999999999999999999999999999998753

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=100.00  E-value=7.5e-41  Score=302.88  Aligned_cols=122  Identities=86%  Similarity=1.224  Sum_probs=105.2

Q ss_pred             ccCCCC-CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Q psy7393         207 MSGRGK-GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRII  285 (549)
Q Consensus       207 MSgrgk-~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRIT  285 (549)
                      |||+|+ ++|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||||+|+|+|+++++++|+
T Consensus         1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krIt   80 (129)
T 1tzy_A            1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII   80 (129)
T ss_dssp             -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEc
Confidence            888887 6777788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         286 PRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       286 PrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      |+||++||+||+|||+||+++||++|||+|+||+++++||+..
T Consensus        81 p~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~~  123 (129)
T 1tzy_A           81 PRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDS  123 (129)
T ss_dssp             HHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGGGSCC----
T ss_pred             HHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHHHcCccccc
Confidence            9999999999999999999999999999999999999998653

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=100.00  E-value=3.3e-40  Score=304.97  Aligned_cols=124  Identities=84%  Similarity=1.184  Sum_probs=104.4

Q ss_pred             cccCCCCC-CCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCccc
Q psy7393         206 TMSGRGKG-GKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRI  284 (549)
Q Consensus       206 ~MSgrgk~-gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRI  284 (549)
                      +|||+|++ +|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||||+|+|+|+++++++|
T Consensus        19 ~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrI   98 (149)
T 2f8n_K           19 SMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRI   98 (149)
T ss_dssp             ---------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             ccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence            69998874 77778889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccce
Q psy7393         285 IPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITI  329 (549)
Q Consensus       285 TPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~~  329 (549)
                      +|+||++||+||+|||+||+++||++|||+|+||++|++||+...
T Consensus        99 tprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~~~  143 (149)
T 2f8n_K           99 IPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESH  143 (149)
T ss_dssp             CHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC-----
T ss_pred             cHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHHHcCcccccc
Confidence            999999999999999999999999999999999999999987543

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=100.00  E-value=2.9e-39  Score=293.18  Aligned_cols=117  Identities=74%  Similarity=1.120  Sum_probs=106.4

Q ss_pred             CCCCCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393         213 GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA  292 (549)
Q Consensus       213 ~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA  292 (549)
                      ++|.+++.+|||+||||||||+||+||||+++|+.||+++|||||+||||||++||||+|+|+|+++++++|+|+||++|
T Consensus         8 ~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lA   87 (131)
T 1id3_C            8 AGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLA   87 (131)
T ss_dssp             --------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred             CCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHH
Confidence            45666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHhhhcCceeccccccCCcccccccccccce
Q psy7393         293 IRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSITI  329 (549)
Q Consensus       293 I~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~~  329 (549)
                      |+||+|||+||+++||++|||+|+||++|++||+...
T Consensus        88 I~nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~~~  124 (131)
T 1id3_C           88 IRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKA  124 (131)
T ss_dssp             HHTCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCCSC
T ss_pred             HhccHHHHHHhcCceecCCccCCCccHHHcCcccccc
Confidence            9999999999999999999999999999999987643

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=100.00  E-value=3e-39  Score=292.09  Aligned_cols=121  Identities=60%  Similarity=0.871  Sum_probs=99.7

Q ss_pred             ccCCCC---CCCCCCccCCccccccccccchhhhhhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy7393         207 MSGRGK---GGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT  282 (549)
Q Consensus       207 MSgrgk---~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya-~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkk  282 (549)
                      |||+..   +++.+++.+|||+||||||||+||+||||+++|+ .||+++|||||+||||||++||||+|+|+|++++++
T Consensus         1 m~~~~~~~~~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~k   80 (128)
T 1f66_C            1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVK   80 (128)
T ss_dssp             ----------------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             CCCCCCCCCCCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            665433   3455667899999999999999999999999987 599999999999999999999999999999999999


Q ss_pred             ccchhhhhhhhcCcHHHHhhhcCceeccccccCCcccccccccccc
Q psy7393         283 RIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGLKAEFSIT  328 (549)
Q Consensus       283 RITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I~~~ll~kK~~~  328 (549)
                      +|+|+||++||+||+||++||+. ||++|||+|+||++|++||+..
T Consensus        81 rItprhi~lAI~nDeEL~~Ll~~-tia~ggv~P~i~~~l~~k~~~~  125 (128)
T 1f66_C           81 RITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGQQ  125 (128)
T ss_dssp             EECHHHHHHHHHHSHHHHHHCCS-EETTCCCCCCCCGGGC------
T ss_pred             eEcHHHHHHHHhccHHHhhhhcc-eecCCccCCCCCHHhcCccccc
Confidence            99999999999999999999964 9999999999999999998653

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=100.00  E-value=2.4e-38  Score=284.43  Aligned_cols=120  Identities=66%  Similarity=0.906  Sum_probs=103.6

Q ss_pred             ccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccc
Q psy7393         350 SGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWC  429 (549)
Q Consensus       350 sg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~  429 (549)
                      ||+||+||.+++++|+|+|+||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|++++++|    
T Consensus         1 ~~~~~~~~~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr----   76 (123)
T 2nqb_C            1 SGRGKGGKVKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTR----   76 (123)
T ss_dssp             ------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----
T ss_pred             CCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----
Confidence            4778889988899999999999999999999999999999999999999999999999999999999999999997    


Q ss_pred             cChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         430 LTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       430 ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      |+|+||++||+||+|||.+++      +++|++|||+||||+++++|++.
T Consensus        77 Itp~hi~lAI~nDeEL~~Ll~------~vtia~ggvlp~i~~~l~~k~~~  120 (123)
T 2nqb_C           77 IIPRHLQLAIRNDEELNKLLS------GVTIAQGGVLPNIQAVLLPKKTE  120 (123)
T ss_dssp             ECHHHHHHHHHTSHHHHHHTT------TEEETTCCCCCCCCGGGSSCC--
T ss_pred             ccHHHHHHHHhccHHHHHHhc------CceeCCCCcCCCccHHHcCcccc
Confidence            999999999999999999998      58889999999999999999864

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=100.00  E-value=2.2e-38  Score=283.68  Aligned_cols=119  Identities=47%  Similarity=0.708  Sum_probs=105.3

Q ss_pred             cccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCccc
Q psy7393         349 MSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWW  428 (549)
Q Consensus       349 msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~  428 (549)
                      |||+|  ||++++++|+|+|+||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|++++++|   
T Consensus         1 m~~~~--~~~~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~r---   75 (120)
T 2f8n_G            1 MSSRG--GKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGR---   75 (120)
T ss_dssp             -----------CCCCCHHHHHTCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE---
T ss_pred             CCCCC--CCCCcCCcCcccccCccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCce---
Confidence            78765  7778889999999999999999999999999999999999999999999999999999999999999997   


Q ss_pred             ccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         429 CLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       429 ~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                       |+|+||++||+||+|||.+++      +++|++|||+||||+++++|+++
T Consensus        76 -Itp~hi~lAI~nDeEL~~Ll~------~vtia~ggv~p~i~~~l~~k~~~  119 (120)
T 2f8n_G           76 -VTPRHILLAVANDEELNQLLK------GVTIASGGVLPNIHPELLAKKRG  119 (120)
T ss_dssp             -ECHHHHHHHHHTSHHHHHHTT------TEEETTCCCCCCCCGGGSCCC--
T ss_pred             -EcHHHHHHHHhcCHHHHHHhC------CceECCCCcCCCcCHHHcCCccC
Confidence             999999999999999999998      58899999999999999999864

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=100.00  E-value=3.5e-38  Score=285.43  Aligned_cols=121  Identities=63%  Similarity=0.905  Sum_probs=103.6

Q ss_pred             cccCCC-CCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcc
Q psy7393         349 MSGRGK-GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSW  427 (549)
Q Consensus       349 msg~gK-~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~  427 (549)
                      |||+|| +||.+++++|+|+|+||||||+||+|+||+++|+.||+++|||||+||||||++||||+|+|+|++++++|  
T Consensus         1 m~~~~~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr--   78 (129)
T 1tzy_A            1 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR--   78 (129)
T ss_dssp             -------------CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE--
T ss_pred             CCCCCCCCCCCCCCCCCccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--
Confidence            788887 77888899999999999999999999999999999999999999999999999999999999999999997  


Q ss_pred             cccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         428 WCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       428 ~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                        |+|+||++||+||+|||.+|+      +++|++|||+||||+++++|++.
T Consensus        79 --Itp~hi~lAI~nDeEL~~L~~------~vtIa~ggvlP~i~~~l~~k~~~  122 (129)
T 1tzy_A           79 --IIPRHLQLAIRNDEELNKLLG------KVTIAQGGVLPNIQAVLLPKKTD  122 (129)
T ss_dssp             --ECHHHHHHHHHTSHHHHHHTT------TEEETTCCCCCCCCGGGSCC---
T ss_pred             --EcHHHHHHHHhccHHHHHHhC------CCeecCCCcCCCCCHHHcCcccc
Confidence              999999999999999999998      68888999999999999999875

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=100.00  E-value=1.8e-37  Score=286.68  Aligned_cols=123  Identities=61%  Similarity=0.860  Sum_probs=102.8

Q ss_pred             cccccCCCC-CCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCC
Q psy7393         347 YTMSGRGKG-GKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTH  425 (549)
Q Consensus       347 ~~msg~gK~-gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR  425 (549)
                      ..|||+||+ ||.+++++|+|+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|+|+|++++++|
T Consensus        18 ~~~~~~~~~~~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkr   97 (149)
T 2f8n_K           18 GSMSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR   97 (149)
T ss_dssp             ----------------CCCHHHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             cccccCCCCCCCCCCCCCCccccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            468998876 7778889999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             cccccChHHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         426 SWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       426 ~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                          |+|+||++||+||+|||.+|+      +++|++|||+|||++++++|++.
T Consensus        98 ----ItprhI~lAI~nDeEL~~Ll~------~vtIa~gGVlP~i~~~l~~k~~~  141 (149)
T 2f8n_K           98 ----IIPRHLQLAIRNDEELNKLLG------RVTIAQGGVLPNIQAVLLPKKTE  141 (149)
T ss_dssp             ----ECHHHHHHHHHHSHHHHHHTT------TEEETTCCCCCCCCGGGSCC---
T ss_pred             ----CcHHHHHHHHhccHHHHHHhc------CceEcCCCCCCCccHHHcCcccc
Confidence                999999999999999999998      68899999999999999999875

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=100.00  E-value=8.7e-37  Score=276.95  Aligned_cols=117  Identities=51%  Similarity=0.821  Sum_probs=104.1

Q ss_pred             CCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccCh
Q psy7393         353 GKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTA  432 (549)
Q Consensus       353 gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITP  432 (549)
                      ||++|.+++++|+|+|+||||||+||+|+||+++|+.||+++|||||+||||||++||||+|+|+|++++++|    |+|
T Consensus         6 ~~~~~~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr----Itp   81 (131)
T 1id3_C            6 GKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTR----IIP   81 (131)
T ss_dssp             ----------CCTTGGGTCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECH
T ss_pred             CCCCCCCCCCCCccccCCeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCce----EcH
Confidence            4566777789999999999999999999999999999999999999999999999999999999999999997    999


Q ss_pred             HHHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         433 ETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       433 ehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      +||++||+||+|||.+++      +++|++|||+||||+.+|+|++.
T Consensus        82 ~hI~lAI~nDeEL~~Ll~------~vtIa~ggvlP~i~~~l~~k~~~  122 (131)
T 1id3_C           82 RHLQLAIRNDDELNKLLG------NVTIAQGGVLPNIHQNLLPKKSA  122 (131)
T ss_dssp             HHHHHHHHTCHHHHHHTT------TEEETTCCCCCCCCGGGSCCSCC
T ss_pred             HHHHHHHhccHHHHHHhc------CceecCCccCCCccHHHcCcccc
Confidence            999999999999999998      68889999999999999999875

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=100.00  E-value=2.4e-36  Score=273.13  Aligned_cols=114  Identities=47%  Similarity=0.641  Sum_probs=98.4

Q ss_pred             CCCCCCcCCCcCcccccccchhhhhHhhhcCCcc-ccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChH
Q psy7393         355 GGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE  433 (549)
Q Consensus       355 ~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya-~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPe  433 (549)
                      +++.+++++|+|+||||||||+||+|+||+++|+ .||+++|||||+||||||++||||+|+|+|++++++|    |+|+
T Consensus        10 ~~~~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~kr----Itpr   85 (128)
T 1f66_C           10 SGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKR----ITPR   85 (128)
T ss_dssp             -------CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE----ECHH
T ss_pred             CCCcCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCe----EcHH
Confidence            3456678899999999999999999999999987 5999999999999999999999999999999999997    9999


Q ss_pred             HHHHHHhCCcccccccCCCCcccceeecCCccccccchhhhhhccc
Q psy7393         434 TVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENATG  479 (549)
Q Consensus       434 hLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~t~  479 (549)
                      ||++||+||+|||.+++       .+|++|||+||||+++|+|++.
T Consensus        86 hi~lAI~nDeEL~~Ll~-------~tia~ggv~P~i~~~l~~k~~~  124 (128)
T 1f66_C           86 HLQLAIRGDEELDSLIK-------ATIAGGGVIPHIHKSLIGKKGQ  124 (128)
T ss_dssp             HHHHHHHHSHHHHHHCC-------SEETTCCCCCCCCGGGC-----
T ss_pred             HHHHHHhccHHHhhhhc-------ceecCCccCCCCCHHhcCcccc
Confidence            99999999999999995       3788999999999999999875

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=100.00  E-value=2e-34  Score=275.15  Aligned_cols=183  Identities=36%  Similarity=0.494  Sum_probs=153.0

Q ss_pred             hhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC--cHHHHhhhcCceeccc
Q psy7393         234 GRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN--DEELNKLLSGVTIAQG  311 (549)
Q Consensus       234 sRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N--DeEL~~Lfk~vtIs~G  311 (549)
                      ..|+|.|++..-...|+..|..+|...+..++..|..-|...++.++++.||+++|+.|++-  ..||    ..+.++.|
T Consensus         7 ~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeL----ak~Av~eG   82 (192)
T 2jss_A            7 SYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGEL----AKHAVSEG   82 (192)
T ss_dssp             HHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHH----HHHHHHHH
T ss_pred             HHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH----HHHHHHHH
Confidence            36899999976667899999999999999999999999999999999999999999999972  1222    12233333


Q ss_pred             cccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCcc-cc
Q psy7393         312 GVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ER  390 (549)
Q Consensus       312 GVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya-~R  390 (549)
                      +            |              ++..   ..|+         ++++|+|+|+||||||+||+|+||+++|+ .|
T Consensus        83 ~------------k--------------Av~k---~~~s---------k~~~s~s~ragl~fPv~ri~R~lk~~~~a~~R  124 (192)
T 2jss_A           83 T------------R--------------AVTK---YSSS---------TQAQSSSARAGLQFPVGRIKRYLKRHATGRTR  124 (192)
T ss_dssp             H------------H--------------HHHH---HHHH---------CSSSCHHHHSSCCSCHHHHHHHHHHTTCSSCC
T ss_pred             H------------H--------------HHHh---hccc---------cccccccccCCCcCCHHHHHHHHHhcCccccc
Confidence            1            0              0100   1111         14569999999999999999999999886 69


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccccCCCCcccceeecCCcccccc
Q psy7393         391 VGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVLGVGDGVADHV  469 (549)
Q Consensus       391 Vsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~gg~s~Sl~~li~ggGV~p~I  469 (549)
                      |+++|||||+||||||++||||+|+|+|+++++++    |+|+|+++||+||+|||++++       .+|++|||+|||
T Consensus       125 v~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~----I~p~~i~lAi~nD~eL~~L~~-------~ti~~ggv~p~i  192 (192)
T 2jss_A          125 VGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKR----ITPRHLQLAIRGDDELDSLIR-------ATIASGGVLPHI  192 (192)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS----CCHHHHHHHHHTSHHHHHHHC-------SCCTTTCCSSCC
T ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCHHHHHHHHhccHHHHHHHh-------hhhcCCCcCCCC
Confidence            99999999999999999999999999999999998    999999999999999999995       367889999997

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=99.97  E-value=7.6e-33  Score=264.32  Aligned_cols=115  Identities=56%  Similarity=0.865  Sum_probs=107.3

Q ss_pred             cCcCCCCCCcccccccCCCCCCCCCCccCCccccccccccchhhhhhhhcCCcc-cccCCChhHHHHHHHHHHHHHHHHH
Q psy7393         193 FSIPGAVPIPQIYTMSGRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLEL  271 (549)
Q Consensus       193 ~~~~a~~~a~s~~~MSgrgk~gk~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya-~RIsssApVYLAAVLEYLtaEILEL  271 (549)
                      +|+..+.+|.+.|+|++         +.+|+|+||||||||+||+||||+++++ .||+++|||||+||||||++||+|+
T Consensus        77 ~Av~eG~kAv~k~~~sk---------~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlel  147 (192)
T 2jss_A           77 HAVSEGTRAVTKYSSST---------QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLEL  147 (192)
T ss_dssp             HHHHHHHHHHHHHHHHC---------SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccc---------ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHH
Confidence            56777788888888875         3469999999999999999999999887 6999999999999999999999999


Q ss_pred             HHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCceeccccccCCc
Q psy7393         272 AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNI  317 (549)
Q Consensus       272 AGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~vtIs~GGVlP~I  317 (549)
                      |+|+|+++++++|+|+||++||+||+||++||+ +||++|||+|||
T Consensus       148 A~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~-~ti~~ggv~p~i  192 (192)
T 2jss_A          148 AGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHI  192 (192)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC-SCCTTTCCSSCC
T ss_pred             HHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh-hhhcCCCcCCCC
Confidence            999999999999999999999999999999996 699999999997

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=99.83  E-value=6.2e-22  Score=226.77  Aligned_cols=100  Identities=27%  Similarity=0.465  Sum_probs=82.7

Q ss_pred             ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHH
Q psy7393         219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE  298 (549)
Q Consensus       219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeE  298 (549)
                      +..+||+|||||||||||||+| +++|++||+++||||||||||||++||||||||+|+++++++|+|+||++||+||+|
T Consensus        93 ~~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e  171 (1049)
T 3ksy_A           93 AIEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV  171 (1049)
T ss_dssp             HHTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred             hhhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence            4579999999999999999999 989999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeccccccCCcccc
Q psy7393         299 LNKLLSGVTIAQGGVLPNIQAG  320 (549)
Q Consensus       299 L~~Lfk~vtIs~GGVlP~I~~~  320 (549)
                      |..+|.+. ...+|++|.....
T Consensus       172 L~~l~~~d-ee~~~~lp~~~~~  192 (1049)
T 3ksy_A          172 LMDMFHQD-VEDINILSLTDEE  192 (1049)
T ss_dssp             HHHHCC----------------
T ss_pred             HHHHHhhc-cccccCCCCcccc
Confidence            99999765 3566788876654

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=99.83  E-value=1.7e-21  Score=223.21  Aligned_cols=86  Identities=30%  Similarity=0.490  Sum_probs=81.4

Q ss_pred             CCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         362 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       362 ~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ..++|+|||||||||||||+| +|+|+.|||++||||||||||||++||||||||+|++++++|    |+|+|+++|++|
T Consensus        94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~----i~p~~~~~ai~~  168 (1049)
T 3ksy_A           94 IEKRKRRNPLSLPVEKIHPLL-KEVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYE----ITKQDIKVAMCA  168 (1049)
T ss_dssp             HTTCCCSSSCSSCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCB----CCHHHHHHHHHH
T ss_pred             hhcccccCCccccHHHHHHHh-hcccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCce----ecCccccccccC
Confidence            468889999999999999999 889999999999999999999999999999999999999997    999999999999


Q ss_pred             CcccccccCCC
Q psy7393         442 FERVDDVHGGD  452 (549)
Q Consensus       442 DeEL~~L~gg~  452 (549)
                      |+||+++++++
T Consensus       169 d~eL~~l~~~d  179 (1049)
T 3ksy_A          169 DKVLMDMFHQD  179 (1049)
T ss_dssp             CSSHHHHCC--
T ss_pred             CHHHHHHHhhc
Confidence            99999999864

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=99.75  E-value=5.8e-19  Score=152.57  Aligned_cols=81  Identities=17%  Similarity=0.345  Sum_probs=62.5

Q ss_pred             ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhh
Q psy7393         223 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKL  302 (549)
Q Consensus       223 rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~L  302 (549)
                      ++.+++++|||+||+|+||.+.+..||++.|+||+++++|||+.||+++|++.|+++++++|+|+||..||++|++|++|
T Consensus         4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL   83 (98)
T 1jfi_A            4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAAN   83 (98)
T ss_dssp             ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC--------
T ss_pred             cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h
Q psy7393         303 L  303 (549)
Q Consensus       303 f  303 (549)
                      +
T Consensus        84 ~   84 (98)
T 1jfi_A           84 K   84 (98)
T ss_dssp             -
T ss_pred             H
Confidence            8

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=99.71  E-value=5.9e-18  Score=146.31  Aligned_cols=82  Identities=15%  Similarity=0.280  Sum_probs=62.1

Q ss_pred             cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcc
Q psy7393         365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFER  444 (549)
Q Consensus       365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeE  444 (549)
                      ++.+++++|||+||+|+||.+.+..|||++|+||+++++||++.||+++|+|.|+++++++    |+|+||+.||.+|++
T Consensus         4 ~~kk~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krkt----I~~~di~~av~~~e~   79 (98)
T 1jfi_A            4 KKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT----MTTSHLKQCIELEGD   79 (98)
T ss_dssp             ------CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C----BCHHHHHTTCC----
T ss_pred             cccccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----ecHHHHHHHHhcCch
Confidence            4567899999999999999999999999999999999999999999999999999999887    999999999999999


Q ss_pred             cccccC
Q psy7393         445 VDDVHG  450 (549)
Q Consensus       445 L~~L~g  450 (549)
                      ++.+..
T Consensus        80 l~FL~d   85 (98)
T 1jfi_A           80 PAANKA   85 (98)
T ss_dssp             ------
T ss_pred             hhHHHh
Confidence            999883

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=99.57  E-value=6.4e-15  Score=137.06  Aligned_cols=144  Identities=21%  Similarity=0.240  Sum_probs=127.3

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCceec
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIA  309 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~vtIs  309 (549)
                      -+|..-|.|+||+.--..|||..|...|+.++|.+..+|...|.+.|+..|+|.|+++||..|+.      .|       
T Consensus         4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~------~l-------   70 (154)
T 1f1e_A            4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD------VL-------   70 (154)
T ss_dssp             CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH------HH-------
T ss_pred             cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH------hc-------
Confidence            47889999999998445999999999999999999999999999999999999999999999881      11       


Q ss_pred             cccccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccc
Q psy7393         310 QGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE  389 (549)
Q Consensus       310 ~GGVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~  389 (549)
                                                 +-+.|.                        .+.++.||++.|.|++|++ +..
T Consensus        71 ---------------------------g~~~v~------------------------d~~~l~lP~a~V~Ri~k~~-g~~   98 (154)
T 1f1e_A           71 ---------------------------MVEGVE------------------------DYDGELFGRATVRRILKRA-GIE   98 (154)
T ss_dssp             ---------------------------TCTTST------------------------TCCSCCCCHHHHHHHHHHT-TCC
T ss_pred             ---------------------------ccccCC------------------------ccccccCCccHHHHHHHHc-CCc
Confidence                                       001111                        2467889999999999998 789


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393         390 RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF  442 (549)
Q Consensus       390 RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND  442 (549)
                      |||++|.++++.+|||++.+|.+.|.+.|++.++|+    |+|+||+.|+.++
T Consensus        99 RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKT----It~eDV~~Al~~~  147 (154)
T 1f1e_A           99 RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKT----VQGEDVEKAITYS  147 (154)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHhc
Confidence            999999999999999999999999999999999887    9999999999773

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=99.54  E-value=5.7e-15  Score=127.23  Aligned_cols=78  Identities=21%  Similarity=0.323  Sum_probs=71.8

Q ss_pred             cccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         226 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       226 RAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      -.+++||++||+|+||.+.+..||++.|++|+++++|||+.++.+.|++.|+.+++++|+|+||..||++|++|++|.
T Consensus        15 ~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~   92 (97)
T 1n1j_B           15 FRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI   92 (97)
T ss_dssp             -----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred             cCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence            346799999999999999999999999999999999999999999999999999999999999999999999999987

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=99.52  E-value=8.4e-15  Score=130.64  Aligned_cols=75  Identities=21%  Similarity=0.343  Sum_probs=72.3

Q ss_pred             ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      .+||++||+|+||.+.+..+|++.|++|+++++|||+.+|++.|++.|+.+++++|+|+||..||++|++|++|.
T Consensus        40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~  114 (119)
T 4g92_C           40 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI  114 (119)
T ss_dssp             CSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred             CCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence            469999999999999999999999999999999999999999999999999999999999999999999998765

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=99.48  E-value=6.8e-14  Score=120.53  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=70.7

Q ss_pred             cccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccc
Q psy7393         369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDV  448 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L  448 (549)
                      .+++||++||+|+||.+.+..||++.|++|+++++||++.++.+.|++.|+++|+++    |+|+||..||.+|++++.+
T Consensus        16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krkt----I~~~di~~Av~~~e~~~FL   91 (97)
T 1n1j_B           16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRT----LQRNDIAMAITKFDQFDFL   91 (97)
T ss_dssp             ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTCGGGGGG
T ss_pred             CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CCHHHHHHHHhcCcHHHHH
Confidence            468999999999999998889999999999999999999999999999999998887    9999999999999999988


Q ss_pred             c
Q psy7393         449 H  449 (549)
Q Consensus       449 ~  449 (549)
                      .
T Consensus        92 ~   92 (97)
T 1n1j_B           92 I   92 (97)
T ss_dssp             T
T ss_pred             H
Confidence            7

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=99.46  E-value=9.5e-14  Score=123.85  Aligned_cols=75  Identities=23%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccccc
Q psy7393         371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVH  449 (549)
Q Consensus       371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~  449 (549)
                      -+|||+||+|+||.+.+..+|++.|++|+++++||++.+|++.|++.|+++|+++    |+|+||..||.++++++.+.
T Consensus        40 ~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krkt----I~~~di~~Av~~~e~~dFL~  114 (119)
T 4g92_C           40 HQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRT----LQRSDIAAALSKSDMFDFLI  114 (119)
T ss_dssp             CSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTCGGGGGGT
T ss_pred             CCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----cCHHHHHHHHhcCchhhHHH
Confidence            4699999999999998999999999999999999999999999999999999997    99999999999999998765

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=99.42  E-value=1.9e-13  Score=119.01  Aligned_cols=88  Identities=27%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             cccCCCCCCC-------CCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393         349 MSGRGKGGKT-------KTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN  421 (549)
Q Consensus       349 msg~gK~gK~-------k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~  421 (549)
                      |||+||+||.       +.+++++++.++  ||+..|+|+++++.+ .||+.+|..+|+.+|||++.||++.|.+.|++.
T Consensus         1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha   77 (103)
T 2yfw_B            1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA   77 (103)
T ss_dssp             -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7777776663       445667999999  999999999999877 799999999999999999999999999999999


Q ss_pred             CCCCcccccChHHHHHHHhCCc
Q psy7393         422 KKTHSWWCLTAETVQGAALTFE  443 (549)
Q Consensus       422 kkkR~~~~ITPehLqlAI~NDe  443 (549)
                      ++++    |+|+||++|+.+.-
T Consensus        78 kRkt----vt~~DV~~Alr~~g   95 (103)
T 2yfw_B           78 KRKT----VTSLDVVYALKRQG   95 (103)
T ss_dssp             TCSE----ECHHHHHHHHHHHC
T ss_pred             CCCc----CcHHHHHHHHHHcC
Confidence            9987    99999999998653

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=99.42  E-value=2.2e-13  Score=118.59  Aligned_cols=88  Identities=28%  Similarity=0.333  Sum_probs=70.6

Q ss_pred             cccCCCCCC-------CCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy7393         349 MSGRGKGGK-------TKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN  421 (549)
Q Consensus       349 msg~gK~gK-------~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~  421 (549)
                      |||+||+||       ++.++.++++.++  ||+..|+|+++++.+ .||+.+|..+|+.+|||++.||++.|.+.|++.
T Consensus         1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha   77 (103)
T 1tzy_D            1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA   77 (103)
T ss_dssp             --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            677666554       3445679999999  999999999999877 799999999999999999999999999999999


Q ss_pred             CCCCcccccChHHHHHHHhCCc
Q psy7393         422 KKTHSWWCLTAETVQGAALTFE  443 (549)
Q Consensus       422 kkkR~~~~ITPehLqlAI~NDe  443 (549)
                      ++++    |+|+||++|+.+.-
T Consensus        78 kRkt----It~~DV~~Alr~~g   95 (103)
T 1tzy_D           78 KRKT----VTAMDVVYALKRQG   95 (103)
T ss_dssp             TCSE----ECHHHHHHHHHHTT
T ss_pred             CCCc----CCHHHHHHHHHHcC
Confidence            9987    99999999998764

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=99.40  E-value=1.3e-13  Score=126.45  Aligned_cols=85  Identities=13%  Similarity=0.195  Sum_probs=62.6

Q ss_pred             ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHh-hhcCCcccchhhhhhhhcCcH
Q psy7393         219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTRIIPRHLQLAIRNDE  297 (549)
Q Consensus       219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~A-r~~kkkRITPrHI~lAI~NDe  297 (549)
                      +..+++.+.+++||++||+|+||...+..+|++.|++|++.++|||+.++.+.|.+.| ...++++|+++||..||.+++
T Consensus         8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e   87 (140)
T 2byk_A            8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK   87 (140)
T ss_dssp             ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred             CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence            4578888999999999999999999999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHhhh
Q psy7393         298 ELNKLL  303 (549)
Q Consensus       298 EL~~Lf  303 (549)
                      +|.+|.
T Consensus        88 ~~dFL~   93 (140)
T 2byk_A           88 NLEFLL   93 (140)
T ss_dssp             TTGGGT
T ss_pred             hhhhHh
Confidence            999988

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=99.37  E-value=2.9e-13  Score=117.92  Aligned_cols=88  Identities=25%  Similarity=0.378  Sum_probs=63.2

Q ss_pred             ccCCCCCCCC-------CCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393         207 MSGRGKGGKA-------KAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN  279 (549)
Q Consensus       207 MSgrgk~gk~-------~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~  279 (549)
                      |||+||++|.       +.++++|+++++  ||+..|+|+++.+.+ .||+..|..+|+.+|||++.+|++.|.+.|+..
T Consensus         1 m~~~gk~gkg~~~~~~kr~~~~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha   77 (103)
T 2yfw_B            1 MSGRGKGGKGLGKGGAKRHRKILRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHA   77 (103)
T ss_dssp             -------------------------------CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCccchhhhhhhhhcc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7887765442       334566899999  999999999999887 799999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhhcCcH
Q psy7393         280 KKTRIIPRHLQLAIRNDE  297 (549)
Q Consensus       280 kkkRITPrHI~lAI~NDe  297 (549)
                      ++++|+|+||.+|+++..
T Consensus        78 kRktvt~~DV~~Alr~~g   95 (103)
T 2yfw_B           78 KRKTVTSLDVVYALKRQG   95 (103)
T ss_dssp             TCSEECHHHHHHHHHHHC
T ss_pred             CCCcCcHHHHHHHHHHcC
Confidence            999999999999999654

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=99.36  E-value=4.9e-13  Score=116.37  Aligned_cols=87  Identities=25%  Similarity=0.382  Sum_probs=70.3

Q ss_pred             ccCCCCCCC-------CCCccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7393         207 MSGRGKGGK-------AKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN  279 (549)
Q Consensus       207 MSgrgk~gk-------~~~k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~  279 (549)
                      |||+||++|       ++.++++|++.++  ||+..|+|+++.+.+ .||+..+..+|+.+|||++.+|++.|.+.|+..
T Consensus         1 m~g~gk~~kg~~~~~~kr~~k~~r~~~~g--ip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~ha   77 (103)
T 1tzy_D            1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHA   77 (103)
T ss_dssp             --------------------CCCCCGGGG--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCCccccccchhhhccc--CCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            788766443       2334568999999  999999999999887 799999999999999999999999999999999


Q ss_pred             CCcccchhhhhhhhcCc
Q psy7393         280 KKTRIIPRHLQLAIRND  296 (549)
Q Consensus       280 kkkRITPrHI~lAI~ND  296 (549)
                      ++++|+|+||.+|+++.
T Consensus        78 kRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           78 KRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             TCSEECHHHHHHHHHHT
T ss_pred             CCCcCCHHHHHHHHHHc
Confidence            99999999999999865

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=99.25  E-value=4.9e-12  Score=116.02  Aligned_cols=85  Identities=9%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             cCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHH-hhcCCCCcccccChHHHHHHH
Q psy7393         361 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAA-RDNKKTHSWWCLTAETVQGAA  439 (549)
Q Consensus       361 k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaA-kd~kkkR~~~~ITPehLqlAI  439 (549)
                      |+.+++.+..++||++||+|+||......+|++.|++|++.++||++.++.+.|.+.| +.+|+++    |++.||..||
T Consensus         8 k~~s~~~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKt----I~~~Dl~~AV   83 (140)
T 2byk_A            8 PPVERPPTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEA----LKYEHLSQVV   83 (140)
T ss_dssp             ---------------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCE----ECHHHHHHHH
T ss_pred             CCCCCCcccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cCHHHHHHHH
Confidence            4578888999999999999999999888999999999999999999999999999999 8888776    9999999999


Q ss_pred             hCCccccccc
Q psy7393         440 LTFERVDDVH  449 (549)
Q Consensus       440 ~NDeEL~~L~  449 (549)
                      .+++.++.+.
T Consensus        84 ~~~e~~dFL~   93 (140)
T 2byk_A           84 NKNKNLEFLL   93 (140)
T ss_dssp             HTCSTTGGGT
T ss_pred             hcCchhhhHh
Confidence            9999999888

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.76  E-value=4e-09  Score=98.22  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             ccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         225 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       225 sRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      .+.++.||++.|.|+||++ ...|||+.|.++|..||||++.+|.+.|.+.|+..++++|+|+||.+|+.++
T Consensus        77 d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~  147 (154)
T 1f1e_A           77 DYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS  147 (154)
T ss_dssp             TCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             ccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            4789999999999999998 7899999999999999999999999999999999999999999999999876

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.33  E-value=4.5e-07  Score=72.69  Aligned_cols=65  Identities=28%  Similarity=0.413  Sum_probs=61.4

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      .||.++|.|+||+. ...||++.|...|.-++|+++.+|.+-|...|...+++.|+|+||+.|++.
T Consensus         2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~   66 (68)
T 1b67_A            2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM   66 (68)
T ss_dssp             CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred             CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            48999999999998 678999999999999999999999999999999999999999999999863

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=98.14  E-value=2e-06  Score=69.53  Aligned_cols=65  Identities=32%  Similarity=0.468  Sum_probs=61.5

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      .||.+.|+|++|+.. ..|++..+...|..++|+++.+|++-|...|+..|++.|+|+||++|+++
T Consensus         6 ~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~   70 (70)
T 1ku5_A            6 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS   70 (70)
T ss_dssp             CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred             cCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence            589999999999974 68999999999999999999999999999999999999999999999875

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=98.14  E-value=3.5e-06  Score=67.46  Aligned_cols=65  Identities=28%  Similarity=0.394  Sum_probs=60.4

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      .+|..+|.|++|+. ...||++.|...+.-++|++..+|.+-|...|.+.|++.    |+|+|++.|++.
T Consensus         2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkT----I~~~Di~~A~~~   66 (68)
T 1b67_A            2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT----IKAEDIELARKM   66 (68)
T ss_dssp             CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHGGG
T ss_pred             CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHh
Confidence            48999999999998 678999999999999999999999999999999988887    999999999863

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=98.06  E-value=6.7e-06  Score=66.49  Aligned_cols=65  Identities=31%  Similarity=0.386  Sum_probs=60.7

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      .||...|+|++|++ -..|++..+...|.-++|+.+.+|++-|...|+..|++.    |+|+|+++|+++
T Consensus         6 ~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkT----I~~~DV~lA~~~   70 (70)
T 1ku5_A            6 ELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT----VKVEDIKLAIKS   70 (70)
T ss_dssp             CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE----ECHHHHHHHHTC
T ss_pred             cCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHHC
Confidence            58999999999997 468999999999999999999999999999999988887    999999999875

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.85  E-value=3.4e-05  Score=67.22  Aligned_cols=82  Identities=22%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             CCCCCCCcCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChH
Q psy7393         354 KGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE  433 (549)
Q Consensus       354 K~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPe  433 (549)
                      |+|.++.+++.+.+..+  +|..-|.|+++++. ..||+..+..-++-++||...+|++-|...|+..+++.    |+++
T Consensus        12 ~~g~kr~~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKT----Vt~~   84 (102)
T 1id3_B           12 KGGAKRHRKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT----VTSL   84 (102)
T ss_dssp             ------------CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHH
T ss_pred             CCccchHHHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CcHH
Confidence            44545556677887777  78889999999975 47999999999999999999999999999999988887    9999


Q ss_pred             HHHHHHhCC
Q psy7393         434 TVQGAALTF  442 (549)
Q Consensus       434 hLqlAI~ND  442 (549)
                      ||..|+...
T Consensus        85 DV~~ALkr~   93 (102)
T 1id3_B           85 DVVYALKRQ   93 (102)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999999865

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.78  E-value=3.1e-05  Score=67.52  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=63.7

Q ss_pred             ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      +++.+.+..+  +|..-|.|+++... ..||+..+..-|..++||++.+|+.-|...|+..+++.|++++|.+|++..
T Consensus        19 ~k~~r~~i~~--ip~~~I~Rlar~~G-v~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~   93 (102)
T 1id3_B           19 RKILRDNIQG--ITKPAIRRLARRGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ   93 (102)
T ss_dssp             -----CCGGG--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             HHHHHhccCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            4455666666  78888999999975 489999999999999999999999999999999999999999999998844

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.72  E-value=3e-05  Score=65.85  Aligned_cols=67  Identities=10%  Similarity=0.262  Sum_probs=62.4

Q ss_pred             cccccchhhhhhhhcC-CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         228 GLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       228 GLqFPVsRI~RlLke~-~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+.||.++|.|+||+. ....||++.|...|+-+.|.++.+|.+-|...|...+++.|+++||..|++
T Consensus         6 d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A            6 DIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             -CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             cccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            5789999999999997 446899999999999999999999999999999999999999999999997

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=97.68  E-value=4.2e-05  Score=62.93  Aligned_cols=65  Identities=22%  Similarity=0.296  Sum_probs=60.1

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+|.+.|+|+||+..-..+|+..|...+.-+.|-+..+|-.-|...|+..+++.|+++||..|++
T Consensus         4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~   68 (76)
T 3b0c_W            4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK   68 (76)
T ss_dssp             CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            58999999999975446799999999999999999999999999999999999999999999985

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=97.52  E-value=4.9e-05  Score=68.63  Aligned_cols=70  Identities=17%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             cccccchhhhhhhhc-CCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcH
Q psy7393         228 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE  297 (549)
Q Consensus       228 GLqFPVsRI~RlLke-~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDe  297 (549)
                      .+.||.++|.|+||+ .....+|+..|...|+-+.|.++.+|-..|...|...+++.|+++||..|+...+
T Consensus         7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~   77 (128)
T 2byk_B            7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD   77 (128)
T ss_dssp             ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence            468999999999996 5557899999999999999999999999999999999999999999999998754

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.41  E-value=0.0003  Score=59.65  Aligned_cols=68  Identities=10%  Similarity=0.232  Sum_probs=60.8

Q ss_pred             cccccchhhhhHhhhcC-CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         369 AGLQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g-~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      ..+.+|.++|.|++|+. .-..||++.|...++-+.|.+..+|.+-|...|...+++.    |+++|+..|+.
T Consensus         5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkT----I~~~Dv~~Al~   73 (93)
T 1n1j_A            5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT----INGEDILFAMS   73 (93)
T ss_dssp             --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHH
T ss_pred             ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHH
Confidence            35789999999999996 3357999999999999999999999999999999888776    99999999997

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=97.31  E-value=0.00048  Score=56.61  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=58.1

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .+|.+.|.|+||+-.-..+|+.+|...+.-+.|-+..+|-.-|...|+..+++.    |+++||+.|+.
T Consensus         4 ~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKT----I~~~dI~~A~~   68 (76)
T 3b0c_W            4 TVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKI----IKPEHTIAAAK   68 (76)
T ss_dssp             CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS----BCHHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHH
Confidence            589999999999753467999999999999999999999999999999888776    99999999985

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=97.14  E-value=0.00064  Score=56.98  Aligned_cols=71  Identities=18%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             ccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         223 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       223 rSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      |.+..|  +|..-|+|+++.+.. .||+..+..-|..++||++.+|+.-|...++..+++.|++++|..|++..
T Consensus         5 r~~~~~--ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~   75 (84)
T 2hue_C            5 RDNIQG--ITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   75 (84)
T ss_dssp             GGGCCS--SCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             cccCCC--CCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            344555  678889999999764 89999999999999999999999999999999999999999999999864

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=97.07  E-value=0.00075  Score=60.95  Aligned_cols=70  Identities=19%  Similarity=0.205  Sum_probs=59.9

Q ss_pred             ccccchhhhhHhhhc-CCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393         370 GLQFPVGRIHRLLRK-GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE  443 (549)
Q Consensus       370 gLqFPVgRI~R~Lk~-g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe  443 (549)
                      .+.||+++|.|+||+ ..-..+|+..|...++-+.|.++.+|-..|...|+..+++.    |+++||..|+....
T Consensus         7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKT----I~~~Dv~~Al~~l~   77 (128)
T 2byk_B            7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT----ITAKDILQTLTELD   77 (128)
T ss_dssp             ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----CCHHHHHHHHHHTT
T ss_pred             cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHHcC
Confidence            578999999999996 44568999999999999999999999999999998888776    99999999998765

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=96.79  E-value=0.0028  Score=53.13  Aligned_cols=72  Identities=22%  Similarity=0.198  Sum_probs=63.3

Q ss_pred             cCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCc
Q psy7393         365 RSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFE  443 (549)
Q Consensus       365 rSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDe  443 (549)
                      |.+..|  +|..-|+|+++++. ..||+..+..-++-++||...+|++-|...++..++|.    |+++++..|+...-
T Consensus         5 r~~~~~--ip~~~I~Riar~~G-v~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKT----vt~~DV~~Alk~~g   76 (84)
T 2hue_C            5 RDNIQG--ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT----VTAMDVVYALKRQG   76 (84)
T ss_dssp             GGGCCS--SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTTC
T ss_pred             cccCCC--CCHHHHHHHHHHcC-chhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CcHHHHHHHHHHcC
Confidence            344455  68889999999975 48999999999999999999999999999999988887    99999999998753

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.61  E-value=0.0026  Score=52.24  Aligned_cols=65  Identities=9%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      -.||+.-|+++.+.-.. .||+..+...|+--+||-..||++-|.+.++..|+++++++||+.|++
T Consensus         5 s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk   69 (70)
T 1taf_B            5 SSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK   69 (70)
T ss_dssp             CCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence            36899999999999553 699999999999999999999999999999999999999999999975

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=96.33  E-value=0.0092  Score=49.01  Aligned_cols=65  Identities=9%  Similarity=0.068  Sum_probs=59.6

Q ss_pred             cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      -.||+.-|+++.+.-. ..||+..+...|+--+||-..||++-|.+.++..|+++    ++++||..|++
T Consensus         5 s~lp~~~v~~iaes~G-i~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~----Lt~~DI~~Alk   69 (70)
T 1taf_B            5 SSISAESMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQK----LSVRDIDMSLK   69 (70)
T ss_dssp             CCCCHHHHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe----ecHHHHHHHHc
Confidence            3689999999999954 47999999999999999999999999999999999997    99999999874

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=96.31  E-value=0.0032  Score=60.02  Aligned_cols=77  Identities=16%  Similarity=0.225  Sum_probs=65.5

Q ss_pred             cccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         226 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       226 RAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      -..+.+|.+.|.|+||+.--..||+..|...|.-|.+-++.+|-..|...|...+++.|+++||..|+. +-++..+.
T Consensus        11 ~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv   87 (179)
T 1jfi_B           11 DDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI   87 (179)
T ss_dssp             -CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred             hhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence            345689999999999995336799999999999999999999999999999999999999999999998 43444333

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.011  Score=58.40  Aligned_cols=169  Identities=22%  Similarity=0.194  Sum_probs=104.4

Q ss_pred             cccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc-----------------CcHHHHhhhcCce--
Q psy7393         247 ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR-----------------NDEELNKLLSGVT--  307 (549)
Q Consensus       247 ~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~-----------------NDeEL~~Lfk~vt--  307 (549)
                      .|..++|...|--+-|...-.++|-+.--|...++..|.|+++++|-+                 +|.-|...|.+++  
T Consensus        35 lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~~~p~evme~~~~~~~~~k~~~~~i~~k  114 (235)
T 2l5a_A           35 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSNIISK  114 (235)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSCCCCSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            588888888887777877777888887777777888999999999843                 2222222221110  


Q ss_pred             ---eccccccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhc
Q psy7393         308 ---IAQGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRK  384 (549)
Q Consensus       308 ---Is~GGVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~  384 (549)
                         |..-|-.+-            .+...++-||+-.     .+|+..+.. +...++..+.-|.-++  ++ +.|+.++
T Consensus       115 y~~~~~~gd~id------------l~tG~iv~dnGh~-----~~l~~~~~~-~~~~~r~~~vLrD~i~--i~-~~RlaRr  173 (235)
T 2l5a_A          115 YESIEEQGDLVD------------LKTGEIVEDNGHI-----KTLTANNST-KDKRTKYTSVLRDIID--IS-DEEDGDK  173 (235)
T ss_dssp             HTTCCCCSCCCS------------SSSCCCCCCCCCC-----CSCCCCCGG-GCCSSTHHHHHHHHHH--HT-CCTTSCC
T ss_pred             HhcccCCCCccc------------CCCCceeeeCcHH-----HHhhcCCCC-CccchhHHHHHHHhhc--cc-HHHHhhc
Confidence               000010000            0111222233222     133322110 1111111222222333  22 5588888


Q ss_pred             CCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         385 GNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       385 g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      +. ..|||..+...+..+||....+|+.-|...|...++|.    |+++++.+|+..
T Consensus       174 gG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKT----Vta~DV~~ALKr  225 (235)
T 2l5a_A          174 GG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT----VTSLDVVYALKR  225 (235)
T ss_dssp             TT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----CCHHHHHHHHHH
T ss_pred             CC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CcHHHHHHHHHh
Confidence            65 58999999999999999999999999999999888776    999999999863

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=95.45  E-value=0.011  Score=53.58  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=59.1

Q ss_pred             ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      -.|.+ .|+|.|++-.-...|++.|.-.|-..++.++..|..-|...|+-++++.|++++||.|++
T Consensus        36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr  100 (126)
T 1tzy_B           36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR  100 (126)
T ss_dssp             CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            45766 899999996656689999999999999999999999999999999999999999999986

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=95.45  E-value=0.017  Score=50.95  Aligned_cols=70  Identities=9%  Similarity=0.049  Sum_probs=60.5

Q ss_pred             ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHH
Q psy7393         229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL  299 (549)
Q Consensus       229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL  299 (549)
                      +-+|-+-|.|+++++ -..||+..+...|.-+++.++.+|..-|...|+..|++.|+++||.+|++.+..+
T Consensus         6 ~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~   75 (111)
T 3b0c_T            6 PEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV   75 (111)
T ss_dssp             ----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred             CCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence            468899999999997 4579999999999999999999999999999999999999999999999876443

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=95.41  E-value=0.022  Score=51.66  Aligned_cols=66  Identities=14%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             cccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         371 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       371 LqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      -.|.+ .|++.||.-.-..+|++.|--.|...++.+...|-.-|...|+.++++.    |++++||.|++-
T Consensus        36 esy~~-YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~T----itsreIqtAvrL  101 (126)
T 1tzy_B           36 ESYSI-YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST----ITSREIQTAVRL  101 (126)
T ss_dssp             CCCHH-HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHH
T ss_pred             ccHHH-HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHH
Confidence            34666 8999999965456899999999999999999999999999999988886    999999999853

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=95.34  E-value=0.018  Score=50.73  Aligned_cols=74  Identities=9%  Similarity=-0.014  Sum_probs=61.7

Q ss_pred             ccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccccc
Q psy7393         370 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDV  448 (549)
Q Consensus       370 gLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L  448 (549)
                      .+.+|-+-|.|++|++ -..|||..+...+.-+++.++.+|..-|...|+..++|.    |+++|+.+|++....+...
T Consensus         5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKT----V~~eDV~lalrr~g~~~~~   78 (111)
T 3b0c_T            5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKT----VEMADVELLMRRQGLVTDK   78 (111)
T ss_dssp             -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHHTTSSBTT
T ss_pred             CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHHHCCCcccc
Confidence            3468999999999997 467999999999999999999999999999999888876    9999999999887765543

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=95.31  E-value=0.027  Score=50.94  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=55.6

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      |. ..|++.||+-.-..+|++.|--.|...++.+...|-.-|...|+.++++.    |++++||.|++-
T Consensus        35 y~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~T----itsreIqtAvrL   98 (123)
T 2nqb_D           35 YA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRST----ITSREIQTAVRL   98 (123)
T ss_dssp             SH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE----ECHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CCHHHHHHHHHH
Confidence            55 37999999965556899999999999999999999999999999888876    999999999853

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=95.31  E-value=0.013  Score=52.98  Aligned_cols=64  Identities=19%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .|. ..|+|.|++-.-...|++.|.-.|-..++.++..|..-|...|+-++++.|++++||.||+
T Consensus        34 sy~-~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr   97 (123)
T 2nqb_D           34 SYA-IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR   97 (123)
T ss_dssp             CSH-HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence            455 5799999996656689999999999999999999999999999999999999999999986

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=95.06  E-value=0.036  Score=52.83  Aligned_cols=68  Identities=16%  Similarity=0.180  Sum_probs=60.2

Q ss_pred             cccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         369 AGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      ..+.+|++.|.|+||+.--..||+..|...|+-+.+-++.+|--.|...|+..++|.    |+++||..|+.
T Consensus        12 eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKT----I~~eDVl~Al~   79 (179)
T 1jfi_B           12 DDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKT----ISPEHVIQALE   79 (179)
T ss_dssp             CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHH
T ss_pred             hhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHH
Confidence            467899999999999952267999999999999999999999888988898887776    99999999987

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=94.98  E-value=0.029  Score=48.09  Aligned_cols=78  Identities=14%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             cccccccchhhhhhh-hcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393         226 RAGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS  304 (549)
Q Consensus       226 RAGLqFPVsRI~RlL-ke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk  304 (549)
                      |+.|.+-|++|-.-. +++  ...++..+...|+.+++..+.+|.+-+...|+.-|++.|++++|.++++.++.|..+++
T Consensus        11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~   88 (90)
T 3v9r_A           11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERVT   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence            456777787765433 222  23466666666666666666666666666788899999999999999999999999876


Q ss_pred             C
Q psy7393         305 G  305 (549)
Q Consensus       305 ~  305 (549)
                      +
T Consensus        89 ~   89 (90)
T 3v9r_A           89 Q   89 (90)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=94.70  E-value=0.048  Score=44.50  Aligned_cols=60  Identities=18%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      -|+|+|++.. ..|++..++.-|.-.+|-.+.+|+.-|...|+..|++.|+.++|++||+.
T Consensus         6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~   65 (68)
T 1taf_A            6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV   65 (68)
T ss_dssp             HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence            4789999955 47999999999999999999999999999999999999999999999864

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=94.60  E-value=0.098  Score=42.67  Aligned_cols=60  Identities=17%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      -|+++||+.. ..|++..++..|.-.++-.+.+|++-|...|+.-+++.    |+.+++++||..
T Consensus         6 ~i~~iLk~~G-~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrkt----v~~eDVkLAi~~   65 (68)
T 1taf_A            6 VIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKT----IDLDDVRLATEV   65 (68)
T ss_dssp             HHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHHH
T ss_pred             HHHHHHHHCC-CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHHh
Confidence            5889999954 57999999999999999999999999999999888776    999999999964

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=93.24  E-value=0.054  Score=47.76  Aligned_cols=78  Identities=14%  Similarity=0.184  Sum_probs=61.9

Q ss_pred             cccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393         226 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS  304 (549)
Q Consensus       226 RAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk  304 (549)
                      |+.|.|-|+||-+---. ....|++..+...|+-+++..+.+|..-+...|+.-|++.|++++|.+|++.++.|...++
T Consensus        18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~   95 (107)
T 3b0b_B           18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT   95 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence            56778888776553322 1235888888888888888888888888888899999999999999999999999877664

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=93.24  E-value=0.054  Score=48.29  Aligned_cols=80  Identities=15%  Similarity=0.168  Sum_probs=61.2

Q ss_pred             ccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393         225 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS  304 (549)
Q Consensus       225 sRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk  304 (549)
                      =|+.|.+.|+||-+-.-..+ ...|+..+...|+-+++..+.+|.+-+...|+--|++.|++++|.++++.++.|..+++
T Consensus        25 LKaal~y~V~rIvke~gaer-~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~  103 (113)
T 4dra_A           25 LKAAVHYTVGCLCEEVALDK-EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYIT  103 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence            36788899888754332211 22477777777777777777777777777788899999999999999999999988775


Q ss_pred             C
Q psy7393         305 G  305 (549)
Q Consensus       305 ~  305 (549)
                      +
T Consensus       104 ~  104 (113)
T 4dra_A          104 D  104 (113)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*

Probab=91.56  E-value=0.16  Score=43.30  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=53.1

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~  294 (549)
                      .||=..|+|+++. .....|+....+.|+++--.++.||+|.|....... ....|.|.||+.|.+
T Consensus        16 ~f~k~~vKrl~~~-~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r   80 (89)
T 1bh9_B           16 AFPKAAIKRLIQS-ITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR   80 (89)
T ss_dssp             CCCHHHHHHHHHH-HHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence            3666678899877 356789999999999999999999999998886544 456899999998865

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=91.12  E-value=0.13  Score=47.37  Aligned_cols=80  Identities=15%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             ccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhc
Q psy7393         225 SRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS  304 (549)
Q Consensus       225 sRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk  304 (549)
                      =|+.|.|-|++|-.-.-.. ....|+..+...|+-+++..+.+|..-+-..|+.-|++.|++.+|.++++.++.|..+++
T Consensus        17 LKaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~   95 (140)
T 3vh5_A           17 LRAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT   95 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence            3567888888875533221 124677777777777777777777777777788899999999999999999999998886


Q ss_pred             C
Q psy7393         305 G  305 (549)
Q Consensus       305 ~  305 (549)
                      +
T Consensus        96 ~   96 (140)
T 3vh5_A           96 Q   96 (140)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=90.47  E-value=0.33  Score=41.54  Aligned_cols=77  Identities=9%  Similarity=-0.086  Sum_probs=58.5

Q ss_pred             ccccccchhhhhHhh-hcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCcccc
Q psy7393         368 RAGLQFPVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVD  446 (549)
Q Consensus       368 RAgLqFPVgRI~R~L-k~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~  446 (549)
                      |+.|.|-|++|-.-. +++  ...|+..+...|+-+++..+.+|.+=+...|+.-+++.    |+++++.++++.++.|.
T Consensus        11 Kaal~~~V~ki~~e~~~~~--g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkT----I~~eDV~L~~Rrn~~L~   84 (90)
T 3v9r_A           11 KARLWIRVEERLQQVLSSE--DIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGV----VNKSDLMLYLRKQPDLQ   84 (90)
T ss_dssp             HHHHHHHHHHHHHHHSCSS--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc--CceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHhChHHH
Confidence            467788888876433 332  23577777777777777777777777778888888776    99999999999999988


Q ss_pred             cccC
Q psy7393         447 DVHG  450 (549)
Q Consensus       447 ~L~g  450 (549)
                      .++.
T Consensus        85 ~~l~   88 (90)
T 3v9r_A           85 ERVT   88 (90)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            7764

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=89.97  E-value=0.26  Score=41.57  Aligned_cols=64  Identities=22%  Similarity=0.130  Sum_probs=53.1

Q ss_pred             ccchhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         231 FPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       231 FPVsRI~RlLke~~------ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      +|---|.|++|+-.      ...|++++|...|--+.|.....+.|-+..-|...|+..|.|++|++|.+
T Consensus         4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r   73 (82)
T 3nqj_A            4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR   73 (82)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence            44444666666622      35699999999999999999999999998889888999999999999865

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=89.87  E-value=0.31  Score=40.69  Aligned_cols=65  Identities=25%  Similarity=0.251  Sum_probs=53.2

Q ss_pred             cccchhhhhhhhcC----CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~----~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      -+|.-=|.|++|+-    .-..|++++|...|--+.|....++.|-+..-|...|+..|.|++|++|.+
T Consensus         3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r   71 (77)
T 2hue_B            3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR   71 (77)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence            34555556666652    124799999999999999999999999998889889999999999999865

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=89.67  E-value=0.58  Score=39.50  Aligned_cols=64  Identities=20%  Similarity=0.010  Sum_probs=51.7

Q ss_pred             cchhhhhHhhhcCC------ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         373 FPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       373 FPVgRI~R~Lk~g~------ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      +|.--+.|+.|+-.      ...|++++|...|--..|.....+.|-+..-|...|++.    |.|+++++|.+
T Consensus         4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvT----i~~kDiqLa~r   73 (82)
T 3nqj_A            4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT----LFPKDVQLARR   73 (82)
T ss_dssp             SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CcHHHHHHHHH
Confidence            34444556666521      357999999999999999999999999999888878776    99999999964

>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D

Probab=89.35  E-value=0.47  Score=39.90  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=56.5

Q ss_pred             cccccchhhhhhhhcC--CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393         228 GLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA  292 (549)
Q Consensus       228 GLqFPVsRI~RlLke~--~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA  292 (549)
                      +-.||..-|.|+|+..  ....||++.|...++..|+-++.|.+.+|..+|+..+...|..+||+..
T Consensus         6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki   72 (81)
T 3b0b_C            6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV   72 (81)
T ss_dssp             -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence            4579999999999982  2346999999999999999999999999999998888889999999863

>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J

Probab=89.20  E-value=0.57  Score=39.76  Aligned_cols=66  Identities=18%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             ccccccchhhhhhhhcCC--cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhh
Q psy7393         227 AGLQFPVGRIHRLLRKGN--YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLA  292 (549)
Q Consensus       227 AGLqFPVsRI~RlLke~~--ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lA  292 (549)
                      ++..||..-|.|+|+..-  ..-||+..|-..++..|+-++.|.+-+|...|...+...|.++||+..
T Consensus         9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki   76 (84)
T 4dra_E            9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV   76 (84)
T ss_dssp             --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence            466899999999999632  346999999999999999999999999999998877888999999863

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=88.97  E-value=0.72  Score=38.46  Aligned_cols=65  Identities=18%  Similarity=0.114  Sum_probs=52.1

Q ss_pred             ccchhhhhHhhhcC----CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         372 QFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       372 qFPVgRI~R~Lk~g----~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      -+|.--+.|++|+-    ....|++++|...|.-..|....++.|-+..-|..-|++.    |.|+++++|.+
T Consensus         3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvT----i~~kDiqLa~r   71 (77)
T 2hue_B            3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVT----IMPKDIQLARR   71 (77)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CcHhhHHHHHH
Confidence            34555555666652    1357999999999999999888999999999888888776    99999999974

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=88.81  E-value=0.3  Score=43.08  Aligned_cols=77  Identities=13%  Similarity=0.088  Sum_probs=61.0

Q ss_pred             ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccc
Q psy7393         368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDD  447 (549)
Q Consensus       368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~  447 (549)
                      |+.|.|-|+||-+---. ....|++..+...|+-+++..+.+|..-+...|+.-+++.    |+++++.++++.++.+..
T Consensus        18 Kaal~~~V~rI~~~~g~-~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkT----I~~eDV~La~Rrn~~l~~   92 (107)
T 3b0b_B           18 RAAVHYTTGCLCQDVAE-DKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRST----ITSEDVKLLARRSNSLLK   92 (107)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----CCHHHHHHHHHhCHHHHH
Confidence            56788888887654322 1235899999999998888888889888888998888776    999999999999988765


Q ss_pred             cc
Q psy7393         448 VH  449 (549)
Q Consensus       448 L~  449 (549)
                      .+
T Consensus        93 ~l   94 (107)
T 3b0b_B           93 YI   94 (107)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=88.02  E-value=0.41  Score=44.10  Aligned_cols=68  Identities=22%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             ccccccchhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         227 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       227 AGLqFPVsRI~RlLke~~------ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+|-+|.--|.|+++|-.      ...|+.++|...|--+.|.....+.|-+..-|...++..|+|++|++|.+
T Consensus        58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr  131 (140)
T 3nqu_A           58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR  131 (140)
T ss_dssp             -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence            478888888889888733      25799999999999999999999999998888888999999999999865

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=87.85  E-value=0.32  Score=45.51  Aligned_cols=69  Identities=22%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             ccccccchhhhhhhhcCC------cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         227 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       227 AGLqFPVsRI~RlLke~~------ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      .+|-+|.--|.|+++|-.      ...|+.+.|...|--+.|.....++|-|...|...++..|+|++|++|.+=
T Consensus        74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI  148 (156)
T 3r45_A           74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI  148 (156)
T ss_dssp             -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence            468888888889888732      246999999999999999999999999988888889999999999999763

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=87.57  E-value=0.77  Score=41.32  Aligned_cols=49  Identities=12%  Similarity=0.159  Sum_probs=46.5

Q ss_pred             ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         246 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       246 a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      ..|||..+-.-+..+||.+..+|+.-|...+...++|.|+..+|..|++
T Consensus        62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk  110 (121)
T 2ly8_A           62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK  110 (121)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence            4799999999999999999999999999999999999999999999876

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=87.37  E-value=0.56  Score=46.44  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             hhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         236 IHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       236 I~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      +.|+.+.+. ..|||..+..-+..+||.+..+|+.-|...|...++|.|++.+|.+|++.
T Consensus       167 ~~RlaRrgG-VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr  225 (235)
T 2l5a_A          167 DEEDGDKGG-VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR  225 (235)
T ss_dssp             CCTTSCCTT-CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             HHHHhhcCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence            557888865 48999999999999999999999999999999999999999999999874

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=87.14  E-value=0.46  Score=42.36  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=60.0

Q ss_pred             ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccc
Q psy7393         368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDD  447 (549)
Q Consensus       368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~  447 (549)
                      |+.|.|.|+||-+---.. ....|+..+...|+-+++..+.+|..-+...|+.-+++.    |++++|.++++.++.|..
T Consensus        26 Kaal~y~V~rIvke~gae-r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkT----I~~eDV~La~Rr~~~L~~  100 (113)
T 4dra_A           26 KAAVHYTVGCLCEEVALD-KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTT----INTEDVKLLARRSNSLLK  100 (113)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCHHHHHHHHHhCHHHHH
Confidence            577899988876433221 122488888888888888888888888888888888776    999999999999988876


Q ss_pred             ccC
Q psy7393         448 VHG  450 (549)
Q Consensus       448 L~g  450 (549)
                      .+.
T Consensus       101 ~l~  103 (113)
T 4dra_A          101 YIT  103 (113)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=86.83  E-value=0.7  Score=43.29  Aligned_cols=68  Identities=21%  Similarity=0.017  Sum_probs=57.7

Q ss_pred             cccccchhhhhHhhhcCC------ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         369 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g~------ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .+|-+|.--+.|++++-.      ...|+.++|...|.-+.|....+++|-|...|..-|++.    |.|++|++|.+
T Consensus        74 teLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVT----Im~kDIqLArr  147 (156)
T 3r45_A           74 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT----LFPKDVQLARR  147 (156)
T ss_dssp             -CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE----ECHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----ccHHHHHHHHH
Confidence            468888888888888732      246999999999999999999999999988888877776    99999999974

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=86.44  E-value=0.86  Score=41.98  Aligned_cols=68  Identities=21%  Similarity=0.017  Sum_probs=57.6

Q ss_pred             cccccchhhhhHhhhcCC------ccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         369 AGLQFPVGRIHRLLRKGN------YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g~------ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .+|-+|.--+.|++++-.      ...|++++|...|.-+.|....+++|-|..-|..-|++.    |.|+|+++|.+
T Consensus        58 t~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVT----Im~kDiqLArr  131 (140)
T 3nqu_A           58 THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVT----LFPKDVQLARR  131 (140)
T ss_dssp             -CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc----ccHHHHHHHHH
Confidence            467888888888888732      357999999999999999999999999988888877776    99999999974

>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*

Probab=86.16  E-value=1.4  Score=37.53  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=52.6

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      .||=..|+|++..- ....|+.+..+.++++--.++.||.|.|..+........   -|.|+||+-|.+.
T Consensus        16 ~f~k~~vKrl~~~~-~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~---Pl~P~HireA~rr   81 (89)
T 1bh9_B           16 AFPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP---PLQPKHMREAVRR   81 (89)
T ss_dssp             CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCCcHHHHHHHHH
Confidence            36666788888763 466899999999999999999999999999876543321   4999999998753

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=85.83  E-value=0.57  Score=40.83  Aligned_cols=68  Identities=24%  Similarity=0.222  Sum_probs=55.7

Q ss_pred             ccccccchhhhhhhhcCC--c-----ccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         227 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       227 AGLqFPVsRI~RlLke~~--y-----a~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+|-+|..-|.|++++-.  +     ..|+.++|...|.-+.|.....+.|-+..-|...|+..|.|++|++|.+
T Consensus        24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r   98 (100)
T 2yfv_A           24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR   98 (100)
T ss_dssp             ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence            477888888888888732  2     5699999999999999999999999998889889999999999999864

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=84.90  E-value=0.81  Score=41.90  Aligned_cols=68  Identities=25%  Similarity=0.249  Sum_probs=59.0

Q ss_pred             ccccccchhhhhhhhcCC----cccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         227 AGLQFPVGRIHRLLRKGN----YAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       227 AGLqFPVsRI~RlLke~~----ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+|-+|.--|.|+++|-.    -..|+.++|...|.-+.|....++.|-+..-|...++..|.|+||++|.+
T Consensus        59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r  130 (136)
T 1tzy_C           59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR  130 (136)
T ss_dssp             CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence            467788888888888731    24799999999999999999999999998889889999999999999864

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=84.63  E-value=1.2  Score=38.77  Aligned_cols=68  Identities=19%  Similarity=0.121  Sum_probs=54.7

Q ss_pred             cccccchhhhhHhhhcCC--c-----cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         369 AGLQFPVGRIHRLLRKGN--Y-----AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g~--y-----a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .+|-+|.--+.|+.++-.  +     ..|++++|...|.-+.|....+++|-+..-|..-|++.    |.|+|+++|.+
T Consensus        24 t~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvT----i~~kDiqLa~r   98 (100)
T 2yfv_A           24 TDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRIT----IMRKDMQLARR   98 (100)
T ss_dssp             ----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred             chhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CCHHHHHHHHH
Confidence            468888888888888731  2     56999999999999999999999999999888888776    99999999964

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=83.94  E-value=2.2  Score=38.41  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=45.9

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         388 AERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       388 a~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ..|||+.+..-+..+||....+|+.-|...++..++|.    |+.+|+..|++.
T Consensus        62 vkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKT----Vta~DV~~Alkr  111 (121)
T 2ly8_A           62 SKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKT----VTSLDVVYALKR  111 (121)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----BCHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----CcHHHHHHHHHh
Confidence            57999999999999999999999999999999888776    999999999854

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=83.73  E-value=1.7  Score=39.81  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             cccccchhhhhHhhhcC----CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         369 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g----~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .+|-+|.--+.|++++-    ....|++++|...|.-..|....+++|-+..-|..-|++.    |.|+|+++|.+
T Consensus        59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvT----i~~kDiqLa~r  130 (136)
T 1tzy_C           59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVT----IMPKDIQLARR  130 (136)
T ss_dssp             CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred             hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----CcHHhHHHHHH
Confidence            36788888888888874    1257999999999999999999999999999888888776    99999999974

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=82.57  E-value=0.95  Score=41.72  Aligned_cols=78  Identities=14%  Similarity=0.090  Sum_probs=61.3

Q ss_pred             ccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccc
Q psy7393         368 RAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDD  447 (549)
Q Consensus       368 RAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~  447 (549)
                      |+.|.|-|++|-.-.-.. ....|+..+...|+-+++..+.+|..=+-..|+.-+++.    |++++|.++++.++.|..
T Consensus        18 KaAl~y~VgkIvee~~~~-~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKT----I~~eDVkLa~Rrn~~L~~   92 (140)
T 3vh5_A           18 RAAVHYTTGALAQDVAED-KGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRST----ITSEDVKLLARRSNSLLK   92 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----cCHHHHHHHHHhCHHHHH
Confidence            567888888886543221 134688888888888888888888888888888888776    999999999999998887


Q ss_pred             ccC
Q psy7393         448 VHG  450 (549)
Q Consensus       448 L~g  450 (549)
                      .+.
T Consensus        93 ~L~   95 (140)
T 3vh5_A           93 YIT   95 (140)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J

Probab=81.63  E-value=4.2  Score=34.44  Aligned_cols=66  Identities=15%  Similarity=0.209  Sum_probs=53.3

Q ss_pred             cccccchhhhhHhhhcC--CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393         369 AGLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA  438 (549)
Q Consensus       369 AgLqFPVgRI~R~Lk~g--~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA  438 (549)
                      ++..||-.-|.|+|+..  +-.-||+.+|-.-++..|+-++.|-+-.|...|+......    |.++|++..
T Consensus         9 ~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~----le~e~LEki   76 (84)
T 4dra_E            9 AGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALR----VDVDQLEKV   76 (84)
T ss_dssp             --CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----ccHHHHHHH
Confidence            46689999999999963  1346999999999999999999999999998888644443    899999874

>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D

Probab=80.77  E-value=3.7  Score=34.45  Aligned_cols=65  Identities=22%  Similarity=0.256  Sum_probs=53.6

Q ss_pred             ccccchhhhhHhhhcC--CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHH
Q psy7393         370 GLQFPVGRIHRLLRKG--NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGA  438 (549)
Q Consensus       370 gLqFPVgRI~R~Lk~g--~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlA  438 (549)
                      .-.||-.-|+|+|+..  +-.-||+++|-.-++..|+-++.|-+..|...|+......    |.++|++..
T Consensus         6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~----le~~~LEki   72 (81)
T 3b0b_C            6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEK----VDIEHVEKV   72 (81)
T ss_dssp             -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe----ecHHHHHHH
Confidence            3469999999999972  2346999999999999999999999999999887655443    899999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	549
d1tzya_	106	a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus)	1e-56
d1tzya_	106	a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus)	3e-30
d1u35c1	106	a.22.1.1 (C:814-919) macro-H2A.1, histone domain {	4e-55
d1u35c1	106	a.22.1.1 (C:814-919) macro-H2A.1, histone domain {	4e-30
d1f66c_	103	a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), v	1e-46
d1f66c_	103	a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), v	3e-26
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	1e-43
d1q9ca_	172	a.22.1.3 (A:) Histone domain of Son of sevenless p	7e-27
d1jfia_	66	a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai	3e-24
d1jfia_	66	a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai	1e-17
d1n1jb_	78	a.22.1.3 (B:) Nuclear transcription factor Y subun	1e-20
d1n1jb_	78	a.22.1.3 (B:) Nuclear transcription factor Y subun	9e-12
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	4e-14
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	5e-11
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	4e-09
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	5e-08

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 106

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  182 bits (464), Expect = 1e-56
 Identities = 94/103 (91%), Positives = 99/103 (96%)

Query: 219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 278
           K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1   KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60

Query: 279 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           NKKTRIIPRHLQLAIRNDEELNKLL  VTIAQGGVLPNIQA L
Sbjct: 61  NKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVL 103

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 106

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  111 bits (280), Expect = 3e-30
 Identities = 58/64 (90%), Positives = 63/64 (98%)

Query: 361 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD 420
           K+K+RSSRAGLQFPVGR+HRLLRKGNYAERVGAGAPVYLAAV+EYL AE+LELAGNAARD
Sbjct: 1   KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARD 60

Query: 421 NKKT 424
           NKKT
Sbjct: 61  NKKT 64

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (454), Expect = 4e-55
 Identities = 66/101 (65%), Positives = 82/101 (81%)

Query: 221 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 280
            +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2   TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61

Query: 281 KTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
           K R+ PRH+ LA+ NDEELN+LL GVTIA GGVLPNI   L
Sbjct: 62  KGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPEL 102

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 4e-30
 Identities = 43/89 (48%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 363 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNK 422
            +RS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAV+EYL AE+LELA NAARDNK
Sbjct: 2   TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNK 61

Query: 423 KTHSWWCLTAETVQGAALTFERVDDVHGG 451
           K      +T   +  A    E ++ +  G
Sbjct: 62  KG----RVTPRHILLAVANDEELNQLLKG 86

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Length = 103

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

 Score =  156 bits (395), Expect = 1e-46
 Identities = 65/103 (63%), Positives = 77/103 (74%), Gaps = 2/103 (1%)

Query: 220 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 278
           + +RS RAGLQFPVGRIHR L+    +  RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1   AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60

Query: 279 NKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAGL 321
            K  RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I   L
Sbjct: 61  LKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSL 102

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Length = 103

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

 Score =  100 bits (251), Expect = 3e-26
 Identities = 47/99 (47%), Positives = 60/99 (60%), Gaps = 5/99 (5%)

Query: 362 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARD 420
           + +RS RAGLQFPVGRIHR L+    +  RVGA A VY AA++EYL AEVLELAGNA++D
Sbjct: 1   AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKD 60

Query: 421 NKKTHSWWCLTAETVQGAALTFERVDDVHGGDGLSLGVL 459
            K       +T   +Q A    E +D +        GV+
Sbjct: 61  LKVK----RITPRHLQLAIRGDEELDSLIKATIAGGGVI 95

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (381), Expect = 1e-43
 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 209 GRGKGGKAKAKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 268
            +     A++  + R  R  L  PV +IH LL++     ++     VY+ AV+EY++A++
Sbjct: 78  DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136

Query: 269 LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL 303
           L+LAGN  R+ +   I  + +++A+  D+ L  + 
Sbjct: 137 LKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (262), Expect = 7e-27
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 351 GRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEV 410
            +      ++  + R  R  L  PV +IH LL++     ++     VY+ AV+EY++A++
Sbjct: 78  DKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADI 136

Query: 411 LELAGNAARDNKKTHSWWCLTAETVQGA 438
           L+LAGN  R+ +       +T + ++ A
Sbjct: 137 LKLAGNYVRNIRHY----EITKQDIKVA 160

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (233), Expect = 3e-24
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
           +FP  RI ++++      +V A  PV ++  +E     +L+ A    +      +   HL
Sbjct: 2   RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHL 61

Query: 290 QLAI 293
           +  I
Sbjct: 62  KQCI 65

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (184), Expect = 1e-17
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKT 424
           +FP  RI ++++      +V A  PV ++  +E     +L+ A    +     
Sbjct: 2   RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAK 54

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (207), Expect = 1e-20
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 232 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQL 291
           P+ RI ++++     + + A APV  A   +    E+   A     DNK+  +    + +
Sbjct: 2   PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAM 61

Query: 292 AIRNDEELNKLLSGV 306
           AI   ++ + L+  V
Sbjct: 62  AITKFDQFDFLIDIV 76

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 9e-12
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 374 PVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAE 433
           P+ RI ++++     + + A APV  A   +    E+   A     DNK+      L   
Sbjct: 2   PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRR----TLQRN 57

Query: 434 TVQGAALTFERVD 446
            +  A   F++ D
Sbjct: 58  DIAMAITKFDQFD 70

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 67.9 bits (166), Expect = 4e-14
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 220 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 279
            +      G  F    + R+L++    ER  + A      ++     E+ E A   A ++
Sbjct: 69  VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127

Query: 280 KKTRIIPRHLQLAIRN 295
            +  +    ++ AI  
Sbjct: 128 GRKTVQGEDVEKAITY 143

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 13/65 (20%), Positives = 25/65 (38%)

Query: 230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHL 289
           + P   I R+ R+G    R+   A   +   +  +A  V   A +    + K  ++  HL
Sbjct: 1   ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHL 60

Query: 290 QLAIR 294
           +    
Sbjct: 61  KALAD 65

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 362 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN 421
            +      G  F    + R+L++    ER  + A      ++     E+ E A   A ++
Sbjct: 69  VEGVEDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADED 127

Query: 422 KKTHSWWCLTAETVQGA 438
            +      +  E V+ A
Sbjct: 128 GRK----TVQGEDVEKA 140

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 50.2 bits (120), Expect = 5e-08
 Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 22/123 (17%)

Query: 372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAAR-DNKKTHSWWCL 430
           + P   I R+ R+G    R+   A   +   +  +A  V   A +      KKT     L
Sbjct: 1   ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKT-----L 55

Query: 431 TAETVQGAALTFERVDDVHGGDGL------------SLGVLGVGDGVAD---HVLEEHLE 475
             E ++  A     V+ V   DG               G+        D    ++    E
Sbjct: 56  MEEHLKALADVL-MVEGVEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATE 114

Query: 476 NAT 478
              
Sbjct: 115 ELG 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	549
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	100.0
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	100.0
d1tzya_	106	Histone H2A {Chicken (Gallus gallus), erythrocytes	100.0
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	100.0
d1u35c1	106	macro-H2A.1, histone domain {Human (Homo sapiens)	100.0
d1f66c_	103	Histone H2A {Human (Homo sapiens), variant H2A.Z [	100.0
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.9
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	99.88
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.64
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	99.33
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	99.22
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	99.06
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	98.81
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	98.68
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	98.21
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	98.16
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	98.09
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	97.91
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	97.87
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	97.72
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	97.63
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	97.29
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.21
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	97.14
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	96.55
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	95.97
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	95.82
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	94.7
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	94.18
d1bh9b_	89	TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	91.04
d1bh9b_	89	TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}	88.08

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=2.5e-41  Score=294.92  Aligned_cols=106  Identities=89%  Similarity=1.259  Sum_probs=103.8

Q ss_pred             ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHH
Q psy7393         219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE  298 (549)
Q Consensus       219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeE  298 (549)
                      |.+|||+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|||+|++++++||||+||++||+||+|
T Consensus         1 k~~Srs~rAgL~FpV~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~rItPrhi~lAirnDee   80 (106)
T d1tzya_           1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE   80 (106)
T ss_dssp             CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHH
T ss_pred             CCccccccCCccCChHHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCceecchhhhhcccCHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCceeccccccCCcccccccc
Q psy7393         299 LNKLLSGVTIAQGGVLPNIQAGLKAE  324 (549)
Q Consensus       299 L~~Lfk~vtIs~GGVlP~I~~~ll~k  324 (549)
                      |+.||+++||++|||+|+||++|++|
T Consensus        81 L~~L~~~vtI~~GGv~P~Ih~~Llpk  106 (106)
T d1tzya_          81 LNKLLGKVTIAQGGVLPNIQAVLLPK  106 (106)
T ss_dssp             HHHHTTTEEETTCCCCCCCCGGGSCC
T ss_pred             HHHHHcCCeecCCCccCccCHhhcCC
Confidence            99999999999999999999999987

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-41  Score=295.11  Aligned_cols=105  Identities=64%  Similarity=0.989  Sum_probs=103.7

Q ss_pred             CCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHH
Q psy7393         221 KTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN  300 (549)
Q Consensus       221 ~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~  300 (549)
                      .|||+||||||||+||+|+||+++|++||+++|||||+||||||++||||+|||+|++++++||+|+||++||+||+||+
T Consensus         2 ~srs~ragL~FpV~ri~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~rItprhi~lairnD~EL~   81 (106)
T d1u35c1           2 TSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELN   81 (106)
T ss_dssp             CCHHHHHTCSSCHHHHHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHH
T ss_pred             CCccccCCcccCHHHHHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCeeecchhhhcccCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCceeccccccCCccccccccc
Q psy7393         301 KLLSGVTIAQGGVLPNIQAGLKAEF  325 (549)
Q Consensus       301 ~Lfk~vtIs~GGVlP~I~~~ll~kK  325 (549)
                      +||+++||++|||+|+||++|++||
T Consensus        82 ~L~~~vtI~~GGv~p~Ih~~Ll~kk  106 (106)
T d1u35c1          82 QLLKGVTIASGGVLPNIHPELLAKK  106 (106)
T ss_dssp             HHTTTEEETTCCCCCCCCGGGSCCC
T ss_pred             HHHcCCeEeCCcccCCcCHHhcCCC
Confidence            9999999999999999999999997

>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=5.1e-39  Score=280.30  Aligned_cols=106  Identities=62%  Similarity=0.876  Sum_probs=102.2

Q ss_pred             cCCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         361 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       361 k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      |.+|||+|||||||||||+|+||+++|+.||+++||||||||||||++||||||||+|+|+|++|    |||+|+++||+
T Consensus         1 k~~Srs~rAgL~FpV~rv~r~Lk~~~~~~rv~~~apVylaAVLEYLtaEiLELAgn~a~~~k~~r----ItPrhi~lAir   76 (106)
T d1tzya_           1 KAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTR----IIPRHLQLAIR   76 (106)
T ss_dssp             CCCCHHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred             CCccccccCCccCChHHHHHHHHcCccccccCCCchHHHHHHHHHHHHHHHHHhhHHHHhcCCce----ecchhhhhccc
Confidence            56899999999999999999999999999999999999999999999999999999999999997    99999999999


Q ss_pred             CCcccccccCCCCcccceeecCCccccccchhhhhh
Q psy7393         441 TFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLEN  476 (549)
Q Consensus       441 NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~  476 (549)
                      ||+||+++|+      +++|++|||+||||+++|+|
T Consensus        77 nDeeL~~L~~------~vtI~~GGv~P~Ih~~Llpk  106 (106)
T d1tzya_          77 NDEELNKLLG------KVTIAQGGVLPNIQAVLLPK  106 (106)
T ss_dssp             TSHHHHHHTT------TEEETTCCCCCCCCGGGSCC
T ss_pred             CHHHHHHHHc------CCeecCCCccCccCHhhcCC
Confidence            9999999998      57888999999999999876

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=100.00  E-value=5.3e-39  Score=279.06  Aligned_cols=101  Identities=64%  Similarity=0.957  Sum_probs=97.9

Q ss_pred             CCccccccccccchhhhhhhhcCCccc-ccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHH
Q psy7393         221 KTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL  299 (549)
Q Consensus       221 ~SrSsRAGLqFPVsRI~RlLke~~ya~-RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL  299 (549)
                      +|||+|||||||||||+|||++++|++ ||+++|||||+||||||++||||+|+|+|++++++||||+||++||+||+||
T Consensus         2 ~Srs~rAgL~FpVgrv~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~rItpr~l~lai~nD~EL   81 (103)
T d1f66c_           2 VSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL   81 (103)
T ss_dssp             CCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHH
T ss_pred             CCccccCCcccChHHHHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCeeechhhhccccCcHHH
Confidence            689999999999999999999999985 6999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCceeccccccCCcccccc
Q psy7393         300 NKLLSGVTIAQGGVLPNIQAGLK  322 (549)
Q Consensus       300 ~~Lfk~vtIs~GGVlP~I~~~ll  322 (549)
                      |+||+ +||++|||+|+|||+|+
T Consensus        82 ~~L~~-vti~~GGv~p~I~~~Ll  103 (103)
T d1f66c_          82 DSLIK-ATIAGGGVIPHIHKSLI  103 (103)
T ss_dssp             HHHCC-SEETTCCCCCCCCGGGC
T ss_pred             HHHhC-eEeeCCeecccccHhhC
Confidence            99995 99999999999999985

>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: macro-H2A.1, histone domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=277.18  Aligned_cols=106  Identities=45%  Similarity=0.672  Sum_probs=102.1

Q ss_pred             CCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         362 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       362 ~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      +.|||+|||||||||||+|+||+++|+.||+++||||||||||||++||||||||+|+++|++|    |+|+|+++||+|
T Consensus         1 k~srs~ragL~FpV~ri~r~Lk~~~~~~rv~~~apVylaAVLEYL~aEILELAgn~a~~~k~~r----Itprhi~lairn   76 (106)
T d1u35c1           1 KTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGR----VTPRHILLAVAN   76 (106)
T ss_dssp             CCCHHHHHTCSSCHHHHHHHHHHHSTTSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHH
T ss_pred             CCCccccCCcccCHHHHHHHHhCCCCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCe----eecchhhhcccC
Confidence            3689999999999999999999999999999999999999999999999999999999999997    999999999999


Q ss_pred             CcccccccCCCCcccceeecCCccccccchhhhhhc
Q psy7393         442 FERVDDVHGGDGLSLGVLGVGDGVADHVLEEHLENA  477 (549)
Q Consensus       442 DeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l~~~  477 (549)
                      |+||+++++      +++|.+|||+||||+++|+||
T Consensus        77 D~EL~~L~~------~vtI~~GGv~p~Ih~~Ll~kk  106 (106)
T d1u35c1          77 DEELNQLLK------GVTIASGGVLPNIHPELLAKK  106 (106)
T ss_dssp             SHHHHHHTT------TEEETTCCCCCCCCGGGSCCC
T ss_pred             HHHHHHHHc------CCeEeCCcccCCcCHHhcCCC
Confidence            999999998      588889999999999999886

>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2A
species: Human (Homo sapiens), variant H2A.Z [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=261.71  Aligned_cols=102  Identities=48%  Similarity=0.664  Sum_probs=97.0

Q ss_pred             CCCcCcccccccchhhhhHhhhcCCccc-cccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         362 SKTRSSRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       362 ~~SrSsRAgLqFPVgRI~R~Lk~g~ya~-RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      ++|||+|||||||||||+|+||+++|++ ||+++||||||||||||++||||+|||+|+++|++|    |||+|+++||+
T Consensus         1 ~~Srs~rAgL~FpVgrv~r~L~~~~~~~~rv~~~A~VyLaAvLEYL~aEILelagn~a~~~~~~r----Itpr~l~lai~   76 (103)
T d1f66c_           1 AVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKR----ITPRHLQLAIR   76 (103)
T ss_dssp             CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE----ECHHHHHHHHH
T ss_pred             CCCccccCCcccChHHHHHHHhccCccceecCCCceeeHHHHHHHHHHHHHHHhhhhhccCCCCe----eechhhhcccc
Confidence            3689999999999999999999999986 699999999999999999999999999999999997    99999999999


Q ss_pred             CCcccccccCCCCcccceeecCCccccccchhhh
Q psy7393         441 TFERVDDVHGGDGLSLGVLGVGDGVADHVLEEHL  474 (549)
Q Consensus       441 NDeEL~~L~gg~s~Sl~~li~ggGV~p~I~~~~l  474 (549)
                      ||+|||++|+       ++|.+|||+|+||+++|
T Consensus        77 nD~EL~~L~~-------vti~~GGv~p~I~~~Ll  103 (103)
T d1f66c_          77 GDEELDSLIK-------ATIAGGGVIPHIHKSLI  103 (103)
T ss_dssp             HSHHHHHHCC-------SEETTCCCCCCCCGGGC
T ss_pred             CcHHHHHHhC-------eEeeCCeecccccHhhC
Confidence            9999999993       78999999999999875

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.7e-25  Score=205.84  Aligned_cols=85  Identities=31%  Similarity=0.557  Sum_probs=74.3

Q ss_pred             ccCCccccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHH
Q psy7393         219 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEE  298 (549)
Q Consensus       219 k~~SrSsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeE  298 (549)
                      +..|||+|+||+|||+||+|+||++ +++||+++|+|||+||||||++||||+|||+|+++++++|+|+||++||+||+|
T Consensus        88 ~~~srs~ragL~fPV~rv~rlLk~~-~a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~nD~e  166 (172)
T d1q9ca_          88 AIEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMCADKV  166 (172)
T ss_dssp             HHC--------CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHHTCHH
T ss_pred             HHhccccccCceecHHHHHHHHHhc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHhCCHH
Confidence            4578999999999999999999996 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhc
Q psy7393         299 LNKLLS  304 (549)
Q Consensus       299 L~~Lfk  304 (549)
                      |+.||+
T Consensus       167 L~~Lf~  172 (172)
T d1q9ca_         167 LMDMFH  172 (172)
T ss_dssp             HHHHCC
T ss_pred             HHHhhC
Confidence            999984

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.8e-24  Score=199.70  Aligned_cols=84  Identities=30%  Similarity=0.497  Sum_probs=72.9

Q ss_pred             CCCcCcccccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         362 SKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       362 ~~SrSsRAgLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ..|+|.|+||+|||+||+|+||++ |+.||+++|+|||+||||||++||||+|||+|+++|++|    |+|+||++||+|
T Consensus        89 ~~srs~ragL~fPV~rv~rlLk~~-~a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkr----Itp~dI~lAi~n  163 (172)
T d1q9ca_          89 IEKRKRRNPLSLPVEKIHPLLKEV-LGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYE----ITKQDIKVAMCA  163 (172)
T ss_dssp             HC--------CCCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSB----CCHHHHHHHHHT
T ss_pred             HhccccccCceecHHHHHHHHHhc-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCce----ecHHHHHHHHhC
Confidence            357899999999999999999997 899999999999999999999999999999999999997    999999999999


Q ss_pred             CcccccccC
Q psy7393         442 FERVDDVHG  450 (549)
Q Consensus       442 DeEL~~L~g  450 (549)
                      |+||+.+|.
T Consensus       164 D~eL~~Lf~  172 (172)
T d1q9ca_         164 DKVLMDMFH  172 (172)
T ss_dssp             CHHHHHHCC
T ss_pred             CHHHHHhhC
Confidence            999999984

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.64  E-value=3e-16  Score=142.50  Aligned_cols=143  Identities=20%  Similarity=0.265  Sum_probs=126.3

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhhcCceec
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIA  309 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lfk~vtIs  309 (549)
                      .+|.+.|+|+||+.....||+..|...|..+++++..+|-..|.+.|...+++.|+|+||+.|++       ++.     
T Consensus         1 ~lP~a~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~-------~~~-----   68 (151)
T d1f1ea_           1 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALAD-------VLM-----   68 (151)
T ss_dssp             CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH-------HHT-----
T ss_pred             CCCccHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-------hcc-----
Confidence            48999999999997778899999999999999999999999999999999999999999999985       000     


Q ss_pred             cccccCCcccccccccccceeeeeeeecCCCcccccccccccCCCCCCCCCcCCCcCcccccccchhhhhHhhhcCCccc
Q psy7393         310 QGGVLPNIQAGLKAEFSITISLFSFVFDNEAVPIQQNYTMSGRGKGGKTKTKSKTRSSRAGLQFPVGRIHRLLRKGNYAE  389 (549)
Q Consensus       310 ~GGVlP~I~~~ll~kK~~~~s~~sfv~dn~avpiqQ~~~msg~gK~gK~k~k~~SrSsRAgLqFPVgRI~R~Lk~g~ya~  389 (549)
                      .++                                                    .+.++++.||+++|+|++|+.. ..
T Consensus        69 ~~~----------------------------------------------------~~~~~~~~fp~a~IkRi~k~~g-~~   95 (151)
T d1f1ea_          69 VEG----------------------------------------------------VEDYDGELFGRATVRRILKRAG-IE   95 (151)
T ss_dssp             CTT----------------------------------------------------STTCCSCCCCHHHHHHHHHHTT-CC
T ss_pred             ccc----------------------------------------------------ccccccCccCHHHHHHHHHcCC-cc
Confidence            000                                                    0122588999999999999853 67


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         390 RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       390 RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ||+++|..|++.++||++.+|++.|.+.|.+.|++.    |+|+||+.|+..
T Consensus        96 ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkT----I~~~DI~~Av~~  143 (151)
T d1f1ea_          96 RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKT----VQGEDVEKAITY  143 (151)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----CCHHHHHHHHHH
Confidence            999999999999999999999999999999999887    999999999964

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.8e-13  Score=105.26  Aligned_cols=65  Identities=22%  Similarity=0.449  Sum_probs=60.1

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      +||++||+|+||.+.+..+|++.|++|++.++|||+.++.+.|++.|+.+++++|+|+||..||.
T Consensus         2 ~fP~srVkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~ai~   66 (66)
T d1jfia_           2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE   66 (66)
T ss_dssp             CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred             CCChHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhC
Confidence            69999999999999999999999999999999999999999999999999999999999999874

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.5e-12  Score=99.53  Aligned_cols=64  Identities=19%  Similarity=0.409  Sum_probs=58.5

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHH
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAA  439 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI  439 (549)
                      +||++||+|+||......+|+++|++|++.++||++.++.+.|++.|+.+|+++    |+|+||..||
T Consensus         2 ~fP~srVkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt----I~~~dl~~ai   65 (66)
T d1jfia_           2 RFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT----MTTSHLKQCI   65 (66)
T ss_dssp             CCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C----BCHHHHHTTC
T ss_pred             CCChHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----CCHHHHHHHh
Confidence            699999999999988899999999999999999999999999999999998887    9999999876

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=9.3e-11  Score=94.69  Aligned_cols=73  Identities=22%  Similarity=0.377  Sum_probs=69.9

Q ss_pred             ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      +|++||+|+||......+|++.|+++++.+.|+++.++.+.|.+.|+..+++.|+|+||..||.+++++.+|.
T Consensus         1 LP~srVkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~~~~~~FL~   73 (78)
T d1n1jb_           1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI   73 (78)
T ss_dssp             CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred             CCHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhcCChhHHHH
Confidence            5999999999998888999999999999999999999999999999999999999999999999999997764

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=4.8e-09  Score=84.45  Aligned_cols=73  Identities=23%  Similarity=0.351  Sum_probs=68.5

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccccccc
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERVDDVH  449 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL~~L~  449 (549)
                      .|++||+|+||......+|++.|+++++.+.|+++.++.+.|++.|+..++++    |+|+|+..|+.++++++.+.
T Consensus         1 LP~srVkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkt----i~~~dl~~av~~~~~~~FL~   73 (78)
T d1n1jb_           1 LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRT----LQRNDIAMAITKFDQFDFLI   73 (78)
T ss_dssp             CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHTTCGGGGGGT
T ss_pred             CCHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----CCHHHHHHHHhcCChhHHHH
Confidence            49999999999877789999999999999999999999999999999988887    99999999999999987765

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.68  E-value=6.1e-09  Score=93.81  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             cccccccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         224 SSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       224 SsRAGLqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      +.++++.||+++|+|+|++.. ..||++.|.+||+.++||++.+|++.|.+.|...+++.|+|+||+.||..
T Consensus        73 ~~~~~~~fp~a~IkRi~k~~g-~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~  143 (151)
T d1f1ea_          73 EDYDGELFGRATVRRILKRAG-IERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY  143 (151)
T ss_dssp             TTCCSCCCCHHHHHHHHHHTT-CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             cccccCccCHHHHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            456799999999999999854 67999999999999999999999999999999999999999999999864

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=98.21  E-value=6e-07  Score=69.96  Aligned_cols=65  Identities=31%  Similarity=0.445  Sum_probs=61.2

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      ++|.++|.|+||.+.. .||+..|...+.-++|.++.++.+.|...|...+++.|+++||..|+++
T Consensus         2 ~LP~a~I~rI~k~~~~-~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~s   66 (66)
T d1ku5a_           2 ELPIAPVDRLIRKAGA-ERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS   66 (66)
T ss_dssp             CSCHHHHHHHHHHTTC-SEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhCcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhC
Confidence            5899999999999754 6999999999999999999999999999999999999999999999875

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=98.16  E-value=8.1e-07  Score=69.38  Aligned_cols=64  Identities=28%  Similarity=0.454  Sum_probs=60.0

Q ss_pred             cccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         230 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       230 qFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .+|.++|+|+++... ..||+..|...++-++|+++.+|.+-|...|...+++.|+|+||..|++
T Consensus         3 eLP~a~I~ri~k~~~-~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk   66 (68)
T d1htaa_           3 ELPIAPIGRIIKNAG-AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK   66 (68)
T ss_dssp             CSCHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence            379999999999964 4699999999999999999999999999999999999999999999985

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1e-06  Score=72.12  Aligned_cols=72  Identities=10%  Similarity=0.191  Sum_probs=65.7

Q ss_pred             ccccchhhhhhhhcC-CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCcHHHH
Q psy7393         229 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELN  300 (549)
Q Consensus       229 LqFPVsRI~RlLke~-~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~NDeEL~  300 (549)
                      |-+|.++|.|+||+. ....+|+..|+..++.+.|.++.++.+.|.+.|...+++.|+|+||..|+.+.+-++
T Consensus         1 l~LP~a~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~~~~   73 (87)
T d1n1ja_           1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDS   73 (87)
T ss_dssp             CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGG
T ss_pred             CCCcHhHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCcHh
Confidence            568999999999974 457899999999999999999999999999999999999999999999999876443

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=97.91  E-value=1e-05  Score=62.91  Aligned_cols=64  Identities=28%  Similarity=0.414  Sum_probs=59.1

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      +|.++|.|++|+.. ..||+.+|...++-++|++..+|.+-|...|+..|+|.    |+|+|+..|+.-
T Consensus         4 LP~a~I~ri~k~~~-~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT----i~~~DV~~Alk~   67 (68)
T d1htaa_           4 LPIAPIGRIIKNAG-AERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT----IKAEDIELARKM   67 (68)
T ss_dssp             SCHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----CCHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHCC-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----CCHHHHHHHHHh
Confidence            79999999999963 46999999999999999999999999999999988887    999999999863

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=97.87  E-value=1.1e-05  Score=62.57  Aligned_cols=65  Identities=31%  Similarity=0.409  Sum_probs=59.8

Q ss_pred             ccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         372 QFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       372 qFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ++|.++|.|++|++. ..||+++|+..+.-++|++..++.+-|...|...++|.    |+++||..|+.+
T Consensus         2 ~LP~a~I~rI~k~~~-~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT----I~~~Dv~~Al~s   66 (66)
T d1ku5a_           2 ELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT----VKVEDIKLAIKS   66 (66)
T ss_dssp             CSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE----ECHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHhCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCHHHHHHHHhC
Confidence            589999999999974 46999999999999999999999999999999888876    999999999875

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.9e-05  Score=63.29  Aligned_cols=71  Identities=11%  Similarity=0.212  Sum_probs=63.6

Q ss_pred             cccchhhhhHhhhcC-CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCCccc
Q psy7393         371 LQFPVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTFERV  445 (549)
Q Consensus       371 LqFPVgRI~R~Lk~g-~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~NDeEL  445 (549)
                      |-+|.++|.|++|+. ....+|+..|+..++.+.|.+..++.+-|.+.|...++|.    |+|+||..|+.+.+-.
T Consensus         1 l~LP~a~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKT----I~~~dv~~Al~~~~~~   72 (87)
T d1n1ja_           1 IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKT----INGEDILFAMSTLGFD   72 (87)
T ss_dssp             CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHHHTTCG
T ss_pred             CCCcHhHHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHcCcH
Confidence            568999999999974 4567999999999999999999999999999999888886    9999999999887643

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.5e-05  Score=70.24  Aligned_cols=68  Identities=18%  Similarity=0.231  Sum_probs=64.3

Q ss_pred             ccccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         229 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       229 LqFPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      |.||.++|.|+||..-...+|+..|+..++-+.|.++.+|...|...|...+++.|+|.||..|+.+-
T Consensus         3 l~LP~a~I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~   70 (135)
T d1jfib_           3 LTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL   70 (135)
T ss_dssp             CCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc
Confidence            68999999999999776789999999999999999999999999999999999999999999999863

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.29  E-value=9.1e-05  Score=58.73  Aligned_cols=64  Identities=11%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             hhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhh-cCCcccchhhhhhhhcCcHHHHhhh
Q psy7393         240 LRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARD-NKKTRIIPRHLQLAIRNDEELNKLL  303 (549)
Q Consensus       240 Lke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~-~kkkRITPrHI~lAI~NDeEL~~Lf  303 (549)
                      ||.+.....|++.|++.++-..|.++.++.+.|.+.+.. ++++.|++.||..||.+++.+.+|-
T Consensus         1 Mk~d~dv~~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~~~~~f~FL~   65 (72)
T d2byka1           1 MKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL   65 (72)
T ss_dssp             CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred             CCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHccCchhhHHH
Confidence            566667789999999999999999999999999887754 4557899999999999999988775

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.21  E-value=0.00012  Score=59.76  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             cchhhhhhhhcC-CcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcC
Q psy7393         232 PVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN  295 (549)
Q Consensus       232 PVsRI~RlLke~-~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~N  295 (549)
                      |.++|.|+||+. ....+|++.|...++-+.|.++.++-+.|...|..++++.|+|+||..|+.+
T Consensus         1 P~a~i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~   65 (89)
T d2bykb1           1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTE   65 (89)
T ss_dssp             CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred             CccHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence            789999999963 4567999999999999999999999999999999999999999999999974

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00031  Score=61.50  Aligned_cols=69  Identities=16%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             ccccchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393         370 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF  442 (549)
Q Consensus       370 gLqFPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND  442 (549)
                      .|.+|.++|.|++|..--..+|+..|+..++-+.|.++.+|...|.+.|...+++.    |+|.||..|+.+-
T Consensus         2 dl~LP~a~I~kI~K~~~~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkT----i~~~Dv~~Al~~~   70 (135)
T d1jfib_           2 DLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKT----ISPEHVIQALESL   70 (135)
T ss_dssp             CCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----BCHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHhhCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----ccHHHHHHHHHHc
Confidence            36899999999999965567999999999999999999999999999999888776    9999999999863

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.55  E-value=0.0018  Score=52.65  Aligned_cols=65  Identities=18%  Similarity=0.197  Sum_probs=58.2

Q ss_pred             chhhhhHhhhcC-CccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393         374 PVGRIHRLLRKG-NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF  442 (549)
Q Consensus       374 PVgRI~R~Lk~g-~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND  442 (549)
                      |.++|.|++|+. ....+|+..|...++-+.|.+..++-+.|...|..++++.    |+|+|+..|+.+-
T Consensus         1 P~a~i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKt----I~~~dv~~Al~~~   66 (89)
T d2bykb1           1 PNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT----ITAKDILQTLTEL   66 (89)
T ss_dssp             CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS----CCHHHHHHHHHHT
T ss_pred             CccHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----cCHHHHHHHHHHC
Confidence            788999999963 3567999999999999999999999999999999888876    9999999999754

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.97  E-value=0.0066  Score=47.70  Aligned_cols=63  Identities=6%  Similarity=-0.012  Sum_probs=53.0

Q ss_pred             hcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHh-hcCCCCcccccChHHHHHHHhCCccccccc
Q psy7393         383 RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAAR-DNKKTHSWWCLTAETVQGAALTFERVDDVH  449 (549)
Q Consensus       383 k~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAk-d~kkkR~~~~ITPehLqlAI~NDeEL~~L~  449 (549)
                      |...-...|++.|++.++-..|.++.++.+.|.+.+. +++++.    |++.|+..||.+++.++.+.
T Consensus         2 k~d~dv~~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~kt----l~~~dl~~aV~~~~~f~FL~   65 (72)
T d2byka1           2 KSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEA----LKYEHLSQVVNKNKNLEFLL   65 (72)
T ss_dssp             CSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCE----ECHHHHHHHHHTCSTTGGGT
T ss_pred             CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc----ccHHHHHHHHccCchhhHHH
Confidence            3444567899999999999999999999999988775 444454    99999999999999988776

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=95.82  E-value=0.0065  Score=48.93  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhcCc
Q psy7393         231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRND  296 (549)
Q Consensus       231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~ND  296 (549)
                      +|=.-|.|+++... ..||+..+..-|..++||...+|+.-|...++..+++.|++++|..|++..
T Consensus        10 I~k~~i~Riar~~G-v~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~   74 (82)
T d2huec1          10 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   74 (82)
T ss_dssp             SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred             cCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhc
Confidence            34446889999865 469999999999999999999999999999999999999999999999854

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=94.70  E-value=0.04  Score=44.13  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhCC
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALTF  442 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~ND  442 (549)
                      .|=.-|.|+.+++. ..||+.++.--++.++||...+|+.-|...++..+++.    |+++++..|++..
T Consensus        10 I~k~~i~Riar~~G-v~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKT----vt~~DV~~Alkr~   74 (82)
T d2huec1          10 ITKPAIRRLARRGG-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKT----VTAMDVVYALKRQ   74 (82)
T ss_dssp             SCHHHHHHHHHHTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHTTTT
T ss_pred             cCHHHHHHHHHHcC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc----CCHHHHHHHHHhc
Confidence            34457889999864 46999999999999999999999999999999988887    9999999999864

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=94.18  E-value=0.018  Score=47.55  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=56.4

Q ss_pred             hhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCcccchhhhhhhhc
Q psy7393         235 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR  294 (549)
Q Consensus       235 RI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~kkkRITPrHI~lAI~  294 (549)
                      .|+|.||+-.....|++.|.-.|-..+.++...|..-|..-|+-++++.|+.++||.|++
T Consensus         8 Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvr   67 (92)
T d1tzyb_           8 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR   67 (92)
T ss_dssp             HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Confidence            689999997777899999999999999999999999999999999999999999999987

>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.07  Score=43.75  Aligned_cols=63  Identities=22%  Similarity=0.382  Sum_probs=54.7

Q ss_pred             ccchhhhhhhhcCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHhhhc-CCcccchhhhhhhhc
Q psy7393         231 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDN-KKTRIIPRHLQLAIR  294 (549)
Q Consensus       231 FPVsRI~RlLke~~ya~RIsssApVYLAAVLEYLtaEILELAGn~Ar~~-kkkRITPrHI~lAI~  294 (549)
                      ||=+.|+|+|+.- ..+.|+....+.++++=--++.||+|.|.+..... ....+.|+||..|.+
T Consensus        17 ~~K~~vkrl~~~~-~g~sv~~~v~i~v~giaKvFvGEiVE~A~~V~~~~~e~~PL~P~HireA~r   80 (89)
T d1bh9b_          17 FPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR   80 (89)
T ss_dssp             CCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH-cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence            8888899999994 56799999999999999999999999998886543 345899999999876

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=91.04  E-value=0.16  Score=41.82  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             hhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHh
Q psy7393         377 RIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAAL  440 (549)
Q Consensus       377 RI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~  440 (549)
                      .|+|.||+-.....|++.|---+-.++.++...|-.-|..-|+.+|++.    |++++||-|++
T Consensus         8 Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~T----itsreIqtAvr   67 (92)
T d1tzyb_           8 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRST----ITSREIQTAVR   67 (92)
T ss_dssp             HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSE----ECHHHHHHHHH
T ss_pred             HHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CcHHHHHHHHH
Confidence            6899999976677999999999999999999999999999999998887    99999999986

>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.44  Score=38.81  Aligned_cols=65  Identities=18%  Similarity=0.242  Sum_probs=54.9

Q ss_pred             cchhhhhHhhhcCCccccccCchhHHHHHHHHHHHHHHHHHhHHHHhhcCCCCcccccChHHHHHHHhC
Q psy7393         373 FPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTHSWWCLTAETVQGAALT  441 (549)
Q Consensus       373 FPVgRI~R~Lk~g~ya~RVsa~ApVYLAAVLEYLtaEILELAGNaAkd~kkkR~~~~ITPehLqlAI~N  441 (549)
                      ||=..|+|++..- ..+.|+.+..+.++++-.-+..||+|.|-.+..+.+...   -|.|+||..|.+.
T Consensus        17 ~~K~~vkrl~~~~-~g~sv~~~v~i~v~giaKvFvGEiVE~A~~V~~~~~e~~---PL~P~HireA~rr   81 (89)
T d1bh9b_          17 FPKAAIKRLIQSI-TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMP---PLQPKHMREAVRR   81 (89)
T ss_dssp             CCHHHHHHHHHHH-HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS---SCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH-cCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCCcHHHHHHHHH
Confidence            8888999999984 467899999999999999999999999999876544332   4999999999763