Psyllid ID: psy7454

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MHMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEYKT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHcccccccccccccHHHHccccHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccccEccccHHHHHHHHcccccccccccccccEcccccEEEEcEEEccccccccccHccccEccccHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mhmprpnayryKYVCFACKFYtyntgnikrhlgmhlgekpftcnmcefkcrdnrtlkahhinihtgqkpypcrycdykarETQALKVHtkryhpkmydveykt
Flexible Loop (DISEMBL)
mhmprpnaYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHhinihtgqkpypCRYCDYKARETQALkvhtkryhpkmydveykt
Low Complexity Region (SEG)
MHMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEYKT
Disordered region (IsUnstruct)
*******AYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM*******
Disordered Region (DISOPRED)
*HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEY**
Disordered Region (DISEMBL)
MHMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEYKT
Disordered Region (DISPRO)
***PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEYKT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVEYKT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
O13089	522	DNA-binding protein Ikaro	N/A	N/A	0.776	0.153	0.345	2e-10
Q9D0B1	321	Zinc finger protein 524 O	no	N/A	0.805	0.258	0.357	2e-10
Q9Y330	459	Zinc finger and BTB domai	yes	N/A	0.844	0.189	0.318	3e-10
Q2EI21	1501	RE1-silencing transcripti	N/A	N/A	0.825	0.056	0.302	3e-10
A2APF3	636	Transcriptional repressor	no	N/A	0.815	0.132	0.341	3e-10
Q6XDT4	562	Ikaros family zinc finger	N/A	N/A	0.728	0.133	0.355	4e-10
O42410	518	DNA-binding protein Ikaro	yes	N/A	0.776	0.154	0.345	4e-10
Q6DBW0	419	Zinc finger protein Pegas	no	N/A	0.815	0.200	0.364	5e-10
Q13422	519	DNA-binding protein Ikaro	no	N/A	0.776	0.154	0.345	5e-10
Q03267	517	DNA-binding protein Ikaro	no	N/A	0.825	0.164	0.336	6e-10

>sp|O13089|IKZF1_ONCMY DNA-binding protein Ikaros OS=Oncorhynchus mykiss GN=ikzf1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           + C  C       GN+ RH+ +H GEKPF C++C + CR    L   H+  H+  KP+ C
Sbjct: 153 FQCTQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALSG-HLRTHSVGKPHKC 211

Query: 73  RYCDYKARETQALKVHTKRYH 93
            YC    ++  +L+ H +R H
Sbjct: 212 AYCGRSYKQRSSLEEHKERCH 232

Binds and activates the enhancer (delta-A element) of the CD3-delta gene. Functions in the specification and the maturation of the T-lymphocyte. Also interacts with a critical control element in the TDT (terminal deoxynucleotidyltransferase) promoter as well as with the promoters for other genes expressed during early stages of B- and T-cell development.
Oncorhynchus mykiss (taxid: 8022)

>sp|Q9D0B1|ZN524_MOUSE Zinc finger protein 524 OS=Mus musculus GN=Znf524 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 1/84 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           +VC  C      + +++RH  +H G +PF C +C  + R+   L AHH  IH+G++PY C
Sbjct: 137 HVCKDCGKTFKRSSHLRRHCNIHAGLRPFRCVLCPRRFREAGEL-AHHHRIHSGERPYQC 195

Query: 73  RYCDYKARETQALKVHTKRYHPKM 96
             C  +  E   L+ H KR HP++
Sbjct: 196 PSCRVRFTEANTLRRHYKRKHPEL 219

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q9Y330|ZBT12_HUMAN Zinc finger and BTB domain-containing protein 12 OS=Homo sapiens GN=ZBTB12 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 8   AYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ 67
           A  + ++C  C     ++ N+ RH+ +H G K  +C +C  KC   ++    H+N+H+G 
Sbjct: 354 AQHFIFMCPRCGKQFNHSSNLNRHMNVHRGVKSHSCGICG-KCFTQKSTLHDHLNLHSGA 412

Query: 68  KPYPCRYCDYKARETQALKVHTKRYHPK 95
           +PY C YCD +     A++ H K  H K
Sbjct: 413 RPYRCSYCDVRFAHKPAIRRHLKEQHGK 440

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q2EI21|RESTA_XENLA RE1-silencing transcription factor A OS=Xenopus laevis GN=rest-a PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           Y C  C + +    ++ RH+  H GEKPF C  C +   +   +  H   +H G KP  C
Sbjct: 302 YQCIICLYSSSQKTHLTRHMRTHSGEKPFKCEQCSYVASNQHEVTRHARQVHNGPKPLTC 361

Query: 73  RYCDYKARETQALKVHTKRY-HPKMY 97
            +CDYK  +    K H + + +P+ +
Sbjct: 362 PHCDYKTADRSNFKKHVELHVNPRQF 387

Transcriptional repressor which binds neuron-restrictive silencer element (NRSE) and represses neuronal gene transcription in non-neuronal cells (By similarity). Plays a role in the early development of the nervous system and is required for proper patterning of the neuroectoderm during gastrulation. This involves the correct speciation of the neuroepithelial domain and adequate development of the non-neural ectoderm.

Xenopus laevis (taxid: 8355)

>sp|A2APF3|CTCFL_MOUSE Transcriptional repressor CTCFL OS=Mus musculus GN=Ctcfl PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 9   YRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
           Y   + C  CK+ +     +KRH+  H GE+PF C  C +  RD+  LK  H+  H+G+K
Sbjct: 338 YEKPFKCSLCKYASVEASKMKRHIRSHTGERPFQCCQCAYASRDSYKLK-RHMRTHSGEK 396

Query: 69  PYPCRYCDYKARETQALKVHTKRYH 93
           PY C  C  +  ++  +K+H  + H
Sbjct: 397 PYECPTCHVRFTQSGTMKIHIAQKH 421

Testis-specific DNA binding protein responsible for insulator function, nuclear architecture and transcriptional control, which probably acts by recruiting epigenetic chromatin modifiers. Plays a key role in gene imprinting in male germline, by participating in the establishment of differential methylation at the IGF2/H19 imprinted control region (ICR). Directly binds the unmethylated H19 ICR and recruits the PRMT7 methyltransferase, leading to methylate histone H4 'Arg-3' to form H4R3sme2. This probably leads to recruit de novo DNA methyltransferases at these sites. Seems to act as tumor suppressor. In association with DNMT1 and DNMT3B, involved in activation of BAG1 gene expression by binding to its promoter. Required for dimethylation of H3 lysine 4 (H3K4me2) of MYC and BRCA1 promoters.

Mus musculus (taxid: 10090)

>sp|Q6XDT4|IKZF_OIKDI Ikaros family zinc finger protein OS=Oikopleura dioica PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           + C  C       GN++RH  +H  EKPF C +C ++CR    L   H+ IH+  +PY C
Sbjct: 73  FKCHICGVAFTQKGNLRRHYKIHSDEKPFQCPICSYRCRRRDALNG-HMRIHSDMRPYRC 131

Query: 73  RYCDYKARETQALKVH 88
            YC    +  Q++K H
Sbjct: 132 SYCARSYKSRQSMKEH 147

Oikopleura dioica (taxid: 34765)

>sp|O42410|IKZF1_CHICK DNA-binding protein Ikaros OS=Gallus gallus GN=IKZF1 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           + C  C       GN+ RH+ +H GEKPF C++C + CR    L   H+  H+  KP+ C
Sbjct: 145 FQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTG-HLRTHSVGKPHKC 203

Query: 73  RYCDYKARETQALKVHTKRYH 93
            YC    ++  +L+ H +R H
Sbjct: 204 GYCGRSYKQRSSLEEHKERCH 224

Binds and activates the enhancer (delta-A element) of the CD3-delta gene. Functions in the specification and the maturation of the T-lymphocyte. Also interacts with a critical control element in the TDT (terminal deoxynucleotidyltransferase) promoter as well as with the promoters for other genes expressed during early stages of B- and T-cell development.

Gallus gallus (taxid: 9031)

>sp|Q6DBW0|IKZF5_DANRE Zinc finger protein Pegasus OS=Danio rerio GN=ikzf5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 9   YRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
           Y  K  C  C + T  T  +  H+ +H GEKP  C++C F     R L+A H+  HTG+K
Sbjct: 75  YDGKLKCRYCNYATRGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEA-HMRSHTGEK 133

Query: 69  PYPCRYCDYKARETQALKVHTKRYH 93
           PY C  C ++  +   L  H +R H
Sbjct: 134 PYKCELCSFRCSDRSNLSHHRRRRH 158

DNA-binding protein that binds to the 5'GNNTGTNG-3' core sequence. Transcriptional repressor.

Danio rerio (taxid: 7955)

>sp|Q13422|IKZF1_HUMAN DNA-binding protein Ikaros OS=Homo sapiens GN=IKZF1 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           + C  C       GN+ RH+ +H GEKPF C++C + CR    L   H+  H+  KP+ C
Sbjct: 145 FQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTG-HLRTHSVGKPHKC 203

Query: 73  RYCDYKARETQALKVHTKRYH 93
            YC    ++  +L+ H +R H
Sbjct: 204 GYCGRSYKQRSSLEEHKERCH 224

Transcription regulator of hematopoietic cell differentiation. Binds gamma-satellite DNA. Binds with higher affinity to gamma satellite A. Plays a role in the development of lymphocytes, B- and T-cells. Binds and activates the enhancer (delta-A element) of the CD3-delta gene. Repressor of the TDT (terminal deoxynucleotidyltransferase) gene during thymocyte differentiation. Regulates transcription through association with both HDAC-dependent and HDAC-independent complexes. Targets the 2 chromatin-remodeling complexes, NuRD and BAF (SWI/SNF), in a single complex (PYR complex), to the beta-globin locus in adult erythrocytes. Increases normal apoptosis in adult erythroid cells. Confers early temporal competence to retinal progenitor cells (RPCs).

Homo sapiens (taxid: 9606)

>sp|Q03267|IKZF1_MOUSE DNA-binding protein Ikaros OS=Mus musculus GN=Ikzf1 PE=1 SV=2

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 2   HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHI 61
           H  RP      + C  C       GN+ RH+ +H GEKPF C++C + CR    L   H+
Sbjct: 139 HTERP------FQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTG-HL 191

Query: 62  NIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
             H+  KP+ C YC    ++  +L+ H +R H
Sbjct: 192 RTHSVGKPHKCGYCGRSYKQRSSLEEHKERCH 223

Transcription regulator of hematopoietic cell differentiation. Binds gamma-satellite DNA. Binds with higher affinity to gamma satellite A. Plays a role in the development of lymphocytes, B- and T-cells. Binds and activates the enhancer (delta-A element) of the CD3-delta gene. Repressor of the TDT (terminal deoxynucleotidyltransferase) gene during thymocyte differentiation. Regulates transcription through association with both HDAC-dependent and HDAC-independent complexes. Targets the 2 chromatin-remodeling complexes, NuRD and BAF (SWI/SNF), in a single complex (PYR complex), to the beta-globin locus in adult erythrocytes. Increases normal apoptosis in adult erythroid cells (By similarity). Confers early temporal competence to retinal progenitor cells (RPCs).

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
432912303	905	PREDICTED: uncharacterized protein LOC10	0.902	0.102	0.329	2e-12
427782147	974	Putative gonadotropin inducible transcri	0.805	0.085	0.380	2e-12
72028083	939	PREDICTED: uncharacterized protein LOC59	0.834	0.091	0.356	5e-12
18539217	939	enhancer binding protein [Paracentrotus	0.834	0.091	0.356	5e-12
427780001	824	Putative gonadotropin inducible transcri	0.805	0.100	0.380	1e-11
90077898	327	unnamed protein product [Macaca fascicul	0.776	0.244	0.407	1e-11
260819951	463	hypothetical protein BRAFLDRAFT_89065 [B	0.582	0.129	0.402	3e-11
326678104	1219	PREDICTED: zinc finger protein 729 [Dani	0.757	0.063	0.417	3e-11
313229585	445	unnamed protein product [Oikopleura dioi	0.728	0.168	0.394	4e-11
322802269	711	hypothetical protein SINV_04694 [Solenop	0.786	0.113	0.402	5e-11

>gi|432912303|ref|XP_004078864.1| PREDICTED: uncharacterized protein LOC101163766 [Oryzias latipes]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 1/94 (1%)

Query: 4   PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINI 63
           P    +R +++C  C     +  N++ H+ +H GE+PF+C+ C  K   +  LK+H  N+
Sbjct: 802 PGAGLHRKRFICSMCNKTYASAQNLEVHMRIHTGERPFSCSQCGKKFTQSAHLKSHQ-NV 860

Query: 64  HTGQKPYPCRYCDYKARETQALKVHTKRYHPKMY 97
           HTG++PY C+ C        +LK+H K+ HP  +
Sbjct: 861 HTGERPYTCKLCSKSFMIKYSLKLHAKKSHPSSW 894

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427782147|gb|JAA56525.1| Putative gonadotropin inducible transcription factor [Rhipicephalus pulchellus]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           YVC  C   +     ++ HL  H GEKPF CN+CE++  D+ +L+ H +  H+G KPY C
Sbjct: 710 YVCSFCGHMSARKAMLQLHLRQHTGEKPFACNLCEYRTGDHNSLRRHKMR-HSGTKPYKC 768

Query: 73  RYCDYKARETQALKVHTKRYHPKM 96
            +C Y   +  + K+H K  HP +
Sbjct: 769 PHCPYACIQAISYKMHMKNKHPGL 792

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|72028083|ref|XP_797592.1| PREDICTED: uncharacterized protein LOC593001 [Strongylocentrotus purpuratus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 2   HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHI 61
           HM   + +   + C  C + +     IKRH+  H GEKP+ C +CE+   DN  LK  H+
Sbjct: 518 HMKYMHTHEKPHKCPLCDYLSVEASKIKRHMRSHTGEKPYKCTLCEYASTDNYKLK-RHM 576

Query: 62  NIHTGQKPYPCRYCDYKARETQALKVH 88
            +HTG++P+ C  CD    +  +LK H
Sbjct: 577 RVHTGERPFNCSQCDQSFSQKSSLKEH 603

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|18539217|emb|CAD22532.1| enhancer binding protein [Paracentrotus lividus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 2   HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHI 61
           HM   + +   + C  C + +     IKRH+  H GEKP+ C +CE+   DN  LK  H+
Sbjct: 519 HMKYMHTHEKPHKCPLCDYLSVEASKIKRHMRSHTGEKPYKCTLCEYCSTDNYKLK-RHM 577

Query: 62  NIHTGQKPYPCRYCDYKARETQALKVH 88
            +HTG++P+ C  CD    +  +LK H
Sbjct: 578 RVHTGERPFSCSQCDQAFSQKSSLKEH 604

Source: Paracentrotus lividus

Species: Paracentrotus lividus

Genus: Paracentrotus

Family: Echinidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|427780001|gb|JAA55452.1| Putative gonadotropin inducible transcription factor [Rhipicephalus pulchellus]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           YVC  C   +     ++ HL  H GEKPF CN+CE++  D+ +L+ H +  H+G KPY C
Sbjct: 661 YVCSFCGHMSARKAMLQLHLRQHTGEKPFACNLCEYRTGDHNSLRRHKMR-HSGTKPYKC 719

Query: 73  RYCDYKARETQALKVHTKRYHPKM 96
            +C Y   +  + K+H K  HP +
Sbjct: 720 PHCPYACIQAISYKMHMKNKHPGL 743

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90077898|dbj|BAE88629.1| unnamed protein product [Macaca fascicularis]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           + C  C + +     +KRH+  H GE+PF C+ C++ CR  R +  H    HTG+KPY C
Sbjct: 67  FKCSMCDYASVEVSKLKRHIRSHTGERPFQCDQCDYACRQERHMIMHK-RTHTGEKPYAC 125

Query: 73  RYCDYKARETQALKVHTKRYH 93
            +CD   R+ Q L +H KRYH
Sbjct: 126 SHCDKTFRQKQLLDMHFKRYH 146

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260819951|ref|XP_002605299.1| hypothetical protein BRAFLDRAFT_89065 [Branchiostoma floridae] gi|229290631|gb|EEN61309.1| hypothetical protein BRAFLDRAFT_89065 [Branchiostoma floridae]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 45/82 (54%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           Y C AC + +    N+KRH+  H GEKP+ C++C +   D   LK H +  H G+KPY C
Sbjct: 182 YKCDACSYSSAQLSNLKRHMAKHTGEKPYKCDICGYGTADMSNLKRHIMGQHAGEKPYKC 241

Query: 73  RYCDYKARETQALKVHTKRYHP 94
             C Y A +   LK+H K  H 
Sbjct: 242 DICGYSAAQRSNLKLHIKAKHS 263

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326678104|ref|XP_003200983.1| PREDICTED: zinc finger protein 729 [Danio rerio]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)

Query: 12  KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
           +++CFAC       G++KRHL +H GEKP+ C+ CE +     ++KAH   IHTG+KPY 
Sbjct: 900 EFMCFACDKAFLTAGHLKRHLMIHTGEKPYKCSHCEMRFTRTESMKAHE-RIHTGEKPYK 958

Query: 72  CRYCDYKARETQALKVHTK 90
           C +CD     +++LK+H +
Sbjct: 959 CSHCDMGFSRSESLKMHER 977

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|313229585|emb|CBY18400.1| unnamed protein product [Oikopleura dioica]

 Score = 72.0 bits (175), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           Y+C  C F     GN++RH+ +H  EKPF C++C +KCR    L   H+ IH+  +P+ C
Sbjct: 67  YICKICGFGFTQKGNLRRHMKIHSDEKPFECSICSYKCRRRDALNG-HMRIHSDHRPFRC 125

Query: 73  RYCDYKARETQALKVH 88
           +YCD   +  Q++K H
Sbjct: 126 KYCDRSYKSRQSMKEH 141

Source: Oikopleura dioica

Species: Oikopleura dioica

Genus: Oikopleura

Family: Oikopleuridae

Class: Appendicularia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|322802269|gb|EFZ22665.1| hypothetical protein SINV_04694 [Solenopsis invicta]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           YVC  C   +     ++ HL  H G+KPF+C +C++K  D+ TL+  HI  HTG +PY C
Sbjct: 428 YVCNVCGHASARKAMLQMHLRQHTGDKPFSCELCDYKTGDHNTLR-RHIMQHTGFRPYKC 486

Query: 73  RYCDYKARETQALKVHTKRYHP 94
            +C Y A ++ + K H K  HP
Sbjct: 487 PHCPYTAIQSSSYKNHLKAKHP 508

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
ZFIN|ZDB-GENE-070705-205	473	si:ch73-138e16.6 "si:ch73-138e	0.776	0.169	0.426	1.3e-15
ZFIN|ZDB-GENE-050306-3	309	zgc:113407 "zgc:113407" [Danio	0.864	0.288	0.402	1.1e-14
ZFIN|ZDB-GENE-081031-35	242	si:ch73-92e7.6 "si:ch73-92e7.6	0.757	0.322	0.414	1.4e-14
UNIPROTKB|F1NUB6	186	ZNF513 "Uncharacterized protei	0.747	0.413	0.397	7.9e-14
ZFIN|ZDB-GENE-070112-222	274	zgc:158517 "zgc:158517" [Danio	0.747	0.281	0.4	1e-13
ZFIN|ZDB-GENE-060512-206	320	zgc:136308 "zgc:136308" [Danio	0.805	0.259	0.402	1.4e-13
ZFIN|ZDB-GENE-050913-91	309	zgc:113886 "zgc:113886" [Danio	0.766	0.255	0.421	2.7e-13
ZFIN|ZDB-GENE-080219-18	394	zgc:174268 "zgc:174268" [Danio	0.776	0.203	0.414	2.8e-13
ZFIN|ZDB-GENE-050913-148	315	zgc:113377 "zgc:113377" [Danio	0.776	0.253	0.353	4.9e-13
MGI|MGI:3652571	636	Ctcfl "CCCTC-binding factor (z	0.883	0.143	0.326	5.7e-13

ZFIN|ZDB-GENE-070705-205 si:ch73-138e16.6 "si:ch73-138e16.6" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query:    12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
             +++CFAC       G++KRHL +H GEKP+ C+ CE +     ++KAH   IHTG+KPY 
Sbjct:   154 EFMCFACDKAFLTAGHLKRHLMIHTGEKPYKCSHCEMRFTRTESMKAHE-RIHTGEKPYK 212

Query:    72 CRYCDYKARETQALKVHTKRYH 93
             C +CD     +++LK+H +R H
Sbjct:   213 CSHCDMGFSRSESLKMH-ERIH 233

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-050306-3 zgc:113407 "zgc:113407" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 37/92 (40%), Positives = 54/92 (58%)

Query:     2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHI 61
             HM      R +Y+CF C+      G++KRH  +H GEKP+ C  C+ +   +  LKAH +
Sbjct:   214 HMKIHTGVR-EYICFECEKTFITAGDMKRHQRIHTGEKPYKCAHCDKRFNQSVNLKAHEM 272

Query:    62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
              IH+G+KP  C +CD K R+ + LK H +R H
Sbjct:   273 -IHSGKKPCKCSHCDKKFRDLRTLKKH-ERIH 302

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-081031-35 si:ch73-92e7.6 "si:ch73-92e7.6" [Danio rerio (taxid:7955)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 34/82 (41%), Positives = 53/82 (64%)

Query:    13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
             Y C  C K + Y+ G +K+H  +H GEKP+ C+ C+ +  D+  LK H + +HTG+KPY 
Sbjct:    88 YKCSHCDKRFRYS-GQLKKHERIHTGEKPYKCSHCDKRFNDSGRLKTHKM-LHTGEKPYK 145

Query:    72 CRYCDYKARETQALKVHTKRYH 93
             C +CD + R+ + LK+H +R H
Sbjct:   146 CSHCDKRFRDLENLKIH-ERIH 166

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1NUB6 ZNF513 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 31/78 (39%), Positives = 42/78 (53%)

Query:    13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
             Y C  C +   N  N+KRH  +H G+KPF C++C + C  +  LK H +  HTG+KP+ C
Sbjct:    83 YKCQLCDYACGNLANLKRHGRIHSGDKPFQCSLCSYSCNQSMNLKRHMLR-HTGEKPFQC 141

Query:    73 RYCDYKARETQALKVHTK 90
             R C Y        K H K
Sbjct:   142 RDCTYTTGHWDNYKRHQK 159

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070112-222 zgc:158517 "zgc:158517" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/80 (40%), Positives = 50/80 (62%)

Query:    12 KYVCFACKFYTYNTG-NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
             +Y+CF C+  T+ T  +++ H  +H GEKP+ C+ C+ +   +  LK H + IHTG+KPY
Sbjct:   164 EYMCFECE-KTFRTAVHLRTHARIHTGEKPYKCSHCDKRFSQSSHLKKHEM-IHTGEKPY 221

Query:    71 PCRYCDYKARETQALKVHTK 90
              C +CD + R +  LK H K
Sbjct:   222 TCSHCDKRFRRSGHLKTHEK 241

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060512-206 zgc:136308 "zgc:136308" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 35/87 (40%), Positives = 51/87 (58%)

Query:    13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
             Y C  C     + GN+++H  +H GEKP+ C+ C+ +  D  TLK H   IHTG+KPY C
Sbjct:   221 YKCSHCDKRVSDLGNLRKHERIHTGEKPYMCSHCDTRFSDLGTLKRHK-RIHTGEKPYKC 279

Query:    73 RYCDYKARETQALKVHTKRYHP--KMY 97
              +CD + R+   L+ H +R H   K+Y
Sbjct:   280 SHCDRRFRQLGNLQTH-ERIHTRKKLY 305

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050913-91 zgc:113886 "zgc:113886" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 35/83 (42%), Positives = 49/83 (59%)

Query:    12 KYVCFACKFYTYNTG-NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
             +Y+CF C+  T+ T   +KRH   H GEKP+ C+ C  +   +  LK H   IHTG+KPY
Sbjct:   167 EYLCFECE-KTFITAVELKRHQMNHTGEKPYKCSHCNKRFSQSANLKKHE-RIHTGEKPY 224

Query:    71 PCRYCDYKARETQALKVHTKRYH 93
              C +CD +  +T  LK H +R H
Sbjct:   225 KCSHCDKRFSQTGHLKTH-ERIH 246

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-080219-18 zgc:174268 "zgc:174268" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 34/82 (41%), Positives = 46/82 (56%)

Query:    12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
             ++VCF C       G +KRH  +H GEKP+TC+ C+ +     TLK H   IHTG+KPY 
Sbjct:   283 EFVCFGCGKTFMTAGLLKRHQRIHTGEKPYTCSHCDRRFSHLETLKIHE-RIHTGEKPYA 341

Query:    72 CRYCDYKARETQALKVHTKRYH 93
             C +C       + LK H +R H
Sbjct:   342 CSHCGKTFSHLETLKAH-ERIH 362

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050913-148 zgc:113377 "zgc:113377" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 4.9e-13, P = 4.9e-13
 Identities = 29/82 (35%), Positives = 51/82 (62%)

Query:    12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
             +++C  C+      G +K+H  +H GEKP+TC+ C  +   + +LK H + IHTG+KPY 
Sbjct:   201 EHMCLECQQTFVTAGQLKQHQRIHTGEKPYTCSHCNKRFNQSGSLKTHEM-IHTGEKPYK 259

Query:    72 CRYCDYKARETQALKVHTKRYH 93
             C +C+ +  ++ ++K H +R H
Sbjct:   260 CSHCNKRFSQSGSMKAH-ERIH 280

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

MGI|MGI:3652571 Ctcfl "CCCTC-binding factor (zinc finger protein)-like" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
 Identities = 30/92 (32%), Positives = 48/92 (52%)

Query:     2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHI 61
             H    + Y   + C  CK+ +     +KRH+  H GE+PF C  C +  RD+  LK  H+
Sbjct:   331 HRRYKHTYEKPFKCSLCKYASVEASKMKRHIRSHTGERPFQCCQCAYASRDSYKLK-RHM 389

Query:    62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
               H+G+KPY C  C  +  ++  +K+H  + H
Sbjct:   390 RTHSGEKPYECPTCHVRFTQSGTMKIHIAQKH 421

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006349 "regulation of gene expression by genetic imprinting" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0016571 "histone methylation" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0043046 "DNA methylation involved in gamete generation" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051569 "regulation of histone H3-K4 methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
COG5189	423	COG5189, SFP1, Putative transcriptional repressor	0.002

>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 20/78 (25%)

Query: 36  LGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQ------------------KPYPCRYC 75
              KP+ C +  C  K ++   LK H ++ H  Q                  KPY C  C
Sbjct: 345 KDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVC 404

Query: 76  DYKARETQALKVHTKRYH 93
           D + +    LK H K  H
Sbjct: 405 DKRYKNLNGLKYHRKHSH 422

Length = 423

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG2462|consensus	279		99.89
KOG2462|consensus	279		99.89
KOG3623|consensus	1007		99.75
KOG3576|consensus	267		99.72
KOG1074|consensus	958		99.68
KOG1074|consensus	958		99.62
KOG3576|consensus	267		99.62
KOG3623|consensus	1007		99.58
PHA00733	128	hypothetical protein	99.4
KOG3608|consensus	467		99.4
PHA02768	55	hypothetical protein; Provisional	99.23
KOG3608|consensus	467		99.18
PHA02768	55	hypothetical protein; Provisional	99.13
PLN03086	567	PRLI-interacting factor K; Provisional	99.02
PHA00733	128	hypothetical protein	99.02
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.97
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.86
PHA00616	44	hypothetical protein	98.86
PLN03086	567	PRLI-interacting factor K; Provisional	98.84
KOG3993|consensus	500		98.83
PHA00616	44	hypothetical protein	98.79
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.53
PHA00732	79	hypothetical protein	98.44
PHA00732	79	hypothetical protein	98.41
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.38
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.37
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.19
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.13
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.09
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.07
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.98
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	97.98
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.96
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.88
KOG3993|consensus	500		97.86
COG5189	423	SFP1 Putative transcriptional repressor regulating	97.78
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.77
smart00355	26	ZnF_C2H2 zinc finger.	97.62
PRK04860	160	hypothetical protein; Provisional	97.6
smart00355	26	ZnF_C2H2 zinc finger.	97.53
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.48
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.34
PRK04860	160	hypothetical protein; Provisional	97.3
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.3
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.09
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	96.8
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	96.56
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.17
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.0
COG4049	65	Uncharacterized protein containing archaeal-type C	95.83
COG4049	65	Uncharacterized protein containing archaeal-type C	95.6
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	95.4
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	95.34
KOG1146|consensus	1406		95.16
COG5048	467	FOG: Zn-finger [General function prediction only]	94.88
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.68
COG5048	467	FOG: Zn-finger [General function prediction only]	94.67
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	94.5
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	94.11
KOG2186|consensus	276		94.09
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.0
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	93.63
KOG2231|consensus	669		93.47
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.44
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	93.21
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	93.12
KOG2186|consensus	276		92.79
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	92.41
COG1592	166	Rubrerythrin [Energy production and conversion]	92.1
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	92.06
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	92.01
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	91.93
KOG2893|consensus	341		91.7
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	91.24
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	90.76
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	90.61
PRK06266	178	transcription initiation factor E subunit alpha; V	90.42
smart00531	147	TFIIE Transcription initiation factor IIE.	90.38
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	89.75
PF05191	36	ADK_lid: Adenylate kinase, active site lid; InterP	89.71
PF05443	132	ROS_MUCR: ROS/MUCR transcriptional regulator prote	89.36
PHA00626	59	hypothetical protein	89.17
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	88.9
COG5236	493	Uncharacterized conserved protein, contains RING Z	88.53
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	87.89
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	87.31
COG4530	129	Uncharacterized protein conserved in bacteria [Fun	86.76
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	86.27
PF14353	128	CpXC: CpXC protein	86.07
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	85.9
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	85.61
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	85.15
KOG2593|consensus	436		84.59
KOG4173|consensus	253		83.66
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	83.43
COG4957	148	Predicted transcriptional regulator [Transcription	83.33
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	82.62
KOG2893|consensus	341		82.58
KOG4173|consensus	253		82.34
PF13878	41	zf-C2H2_3: zinc-finger of acetyl-transferase ESCO	81.94
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	81.83
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	81.8
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	80.49
KOG1280|consensus	381		80.41
KOG4167|consensus	907		80.3
PF13451	49	zf-trcl: Probable zinc-binding domain	80.13

>KOG2462|consensus

Probab=99.89  E-value=9.1e-24  Score=123.63  Aligned_cols=87  Identities=23%  Similarity=0.456  Sum_probs=69.1

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHH
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT   89 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~   89 (103)
                      ++.+.|+.||+.|.....|..|+++|+  -+.+|.+||+.|..+=.|+.| +++|+|||||.|..|++.|..+++|..|+
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWLLQGH-iRTHTGEKPF~C~hC~kAFADRSNLRAHm  235 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWLLQGH-IRTHTGEKPFSCPHCGKAFADRSNLRAHM  235 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHHhhcc-cccccCCCCccCCcccchhcchHHHHHHH
Confidence            456777777777777777777777775  567788888888887778887 78888888888888888888888888888


Q ss_pred             HhhCCCCCcc
Q psy7454          90 KRYHPKMYDV   99 (103)
Q Consensus        90 ~~~~~~~~~~   99 (103)
                      ++|.+.++|.
T Consensus       236 QTHS~~K~~q  245 (279)
T KOG2462|consen  236 QTHSDVKKHQ  245 (279)
T ss_pred             HhhcCCcccc
Confidence            8888888774

>KOG2462|consensus

Probab=99.89  E-value=4.1e-24  Score=125.06  Aligned_cols=85  Identities=26%  Similarity=0.440  Sum_probs=78.9

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcH
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQ   83 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~   83 (103)
                      .|+|+  -+..|.+||+.|...=-|+.|+|+|+||+||.|..|+++|...++|+.| +.+|.+.++|.|..|++.|...+
T Consensus       181 irTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH-mQTHS~~K~~qC~~C~KsFsl~S  257 (279)
T KOG2462|consen  181 IRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH-MQTHSDVKKHQCPRCGKSFALKS  257 (279)
T ss_pred             hhccC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH-HHhhcCCccccCcchhhHHHHHH
Confidence            44555  6799999999999888899999999999999999999999999999998 89999999999999999999999


Q ss_pred             HHHHHHHh
Q psy7454          84 ALKVHTKR   91 (103)
Q Consensus        84 ~l~~H~~~   91 (103)
                      .|.+|.-.
T Consensus       258 yLnKH~ES  265 (279)
T KOG2462|consen  258 YLNKHSES  265 (279)
T ss_pred             HHHHhhhh
Confidence            99999754

>KOG3623|consensus

Probab=99.75  E-value=2.4e-19  Score=116.52  Aligned_cols=80  Identities=24%  Similarity=0.559  Sum_probs=76.7

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHH
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT   89 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~   89 (103)
                      ...|.|+.|++.|...+.|.+|...|+|.+||.|.+|.++|+.+-.|..| ++.|.|++||.|..|++.|.++..+..||
T Consensus       892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKAFKHKHHLtEH-kRLHSGEKPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKAFKHKHHLTEH-KRLHSGEKPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHhhhhhhhhhhh-hhhccCCCcchhhhhhhhcccccchHhhh
Confidence            45799999999999999999999999999999999999999999999998 99999999999999999999999999987


Q ss_pred             H
Q psy7454          90 K   90 (103)
Q Consensus        90 ~   90 (103)
                      -
T Consensus       971 N  971 (1007)
T KOG3623|consen  971 N  971 (1007)
T ss_pred             c
Confidence            5

>KOG3576|consensus

Probab=99.72  E-value=7.1e-19  Score=99.61  Aligned_cols=87  Identities=28%  Similarity=0.467  Sum_probs=80.9

Q ss_pred             CCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHH
Q psy7454           9 YRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH   88 (103)
Q Consensus         9 ~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H   88 (103)
                      +...|.|.+|++.|.....|.+|++.|...+.+.|..||++|...-.|++| .++|+|-+||+|..|++.|++..+|..|
T Consensus       114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh-~rthtgvrpykc~~c~kaftqrcslesh  192 (267)
T KOG3576|consen  114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRH-TRTHTGVRPYKCSLCEKAFTQRCSLESH  192 (267)
T ss_pred             CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhh-hccccCccccchhhhhHHHHhhccHHHH
Confidence            345799999999999999999999999999999999999999999999998 8999999999999999999999999999


Q ss_pred             HHhhCCCC
Q psy7454          89 TKRYHPKM   96 (103)
Q Consensus        89 ~~~~~~~~   96 (103)
                      ++..+|..
T Consensus       193 l~kvhgv~  200 (267)
T KOG3576|consen  193 LKKVHGVQ  200 (267)
T ss_pred             HHHHcCch
Confidence            99877654

>KOG1074|consensus

Probab=99.68  E-value=2.9e-17  Score=108.10  Aligned_cols=58  Identities=28%  Similarity=0.513  Sum_probs=54.8

Q ss_pred             ecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCccc
Q psy7454          42 TCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        42 ~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      .|.+||+.|...+.|+.| +++|++++||.|.+|++.|....+|+.||.+|.+..|..+
T Consensus       881 ~C~vCgk~FsSSsALqiH-~rTHtg~KPF~C~fC~~aFttrgnLKvHMgtH~w~q~~sr  938 (958)
T KOG1074|consen  881 VCNVCGKQFSSSAALEIH-MRTHTGPKPFFCHFCEEAFTTRGNLKVHMGTHMWVQPPSR  938 (958)
T ss_pred             hhccchhcccchHHHHHh-hhcCCCCCCccchhhhhhhhhhhhhhhhhccccccCCCcc
Confidence            799999999999999998 9999999999999999999999999999999998887643

>KOG1074|consensus

Probab=99.62  E-value=1.2e-16  Score=105.20  Aligned_cols=56  Identities=25%  Similarity=0.459  Sum_probs=40.7

Q ss_pred             ecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          42 TCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        42 ~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .|.+|.+...-.+.|+.| -++|+||+||+|.+||+.|.++.+|+.|+..|....|+
T Consensus       607 qCiiC~rVlSC~saLqmH-yrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~  662 (958)
T KOG1074|consen  607 QCIICLRVLSCPSALQMH-YRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA  662 (958)
T ss_pred             ceeeeeecccchhhhhhh-hhcccCcCccccccccchhccccchhhcccccccCccc
Confidence            677777777777777776 67777777777777777777777777777777554443

>KOG3576|consensus

Probab=99.62  E-value=1.5e-16  Score=90.32  Aligned_cols=95  Identities=25%  Similarity=0.460  Sum_probs=83.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcC----------CCCCeeC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT----------GQKPYPC   72 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~----------~~~~~~c   72 (103)
                      |+.-|+..+.+.|..||+.|.+...|++|+++|+|.+||.|..|+++|.....|..|...+|.          .++.|.|
T Consensus       136 h~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vc  215 (267)
T KOG3576|consen  136 HLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVC  215 (267)
T ss_pred             HhhhccHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeee
Confidence            455677778899999999999999999999999999999999999999999999999666664          3577999


Q ss_pred             CCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          73 RYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        73 ~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      ..||........+..|+..++..-|
T Consensus       216 edcg~t~~~~e~~~~h~~~~hp~Sp  240 (267)
T KOG3576|consen  216 EDCGYTSERPEVYYLHLKLHHPFSP  240 (267)
T ss_pred             cccCCCCCChhHHHHHHHhcCCCCH
Confidence            9999999999999999999886544

>KOG3623|consensus

Probab=99.58  E-value=5.4e-16  Score=101.28  Aligned_cols=80  Identities=24%  Similarity=0.595  Sum_probs=71.1

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCC-------------CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLG-------------EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDY   77 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~-------------~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~   77 (103)
                      ..|.|..|..+|..+..|.+|+.+|..             -+.|+|.+||++|+.+-.|+.| +++|.|++||.|+.|++
T Consensus       239 ~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEH-lRIHSGEKPfeCpnCkK  317 (1007)
T KOG3623|consen  239 PNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEH-LRIHSGEKPFECPNCKK  317 (1007)
T ss_pred             CCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccchhhhhHHHHHhh-heeecCCCCcCCccccc
Confidence            358899999999999999999988742             2458999999999999999998 89999999999999999


Q ss_pred             cccCcHHHHHHHHh
Q psy7454          78 KARETQALKVHTKR   91 (103)
Q Consensus        78 ~f~~~~~l~~H~~~   91 (103)
                      .|.++..+..|+..
T Consensus       318 RFSHSGSySSHmSS  331 (1007)
T KOG3623|consen  318 RFSHSGSYSSHMSS  331 (1007)
T ss_pred             ccccCCcccccccc
Confidence            99999999999764

>PHA00733 hypothetical protein

Probab=99.40  E-value=2.8e-13  Score=73.25  Aligned_cols=82  Identities=21%  Similarity=0.364  Sum_probs=67.8

Q ss_pred             CCceeeCCCCCcccCchhHHHH--H---hhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHH
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRH--L---GMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA   84 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h--~---~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~   84 (103)
                      ++++.|.+|...|.....|..+  .   ..+.+.++|.|..||+.|.....|..| ++.+  +.++.|..|++.|.....
T Consensus        38 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H-~r~h--~~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         38 QKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQH-IRYT--EHSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHH-HhcC--CcCccCCCCCCccCCHHH
Confidence            5678999999888877666554  1   123458899999999999999999998 6655  457999999999999999


Q ss_pred             HHHHHHhhCC
Q psy7454          85 LKVHTKRYHP   94 (103)
Q Consensus        85 l~~H~~~~~~   94 (103)
                      |..|+...++
T Consensus       115 L~~H~~~~h~  124 (128)
T PHA00733        115 TLDHVCKKHN  124 (128)
T ss_pred             HHHHHHHhcC
Confidence            9999998775

>KOG3608|consensus

Probab=99.40  E-value=3.4e-13  Score=82.33  Aligned_cols=95  Identities=20%  Similarity=0.382  Sum_probs=69.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCC----------------------------CCCeecCCCCccccCch
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLG----------------------------EKPFTCNMCEFKCRDNR   54 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~----------------------------~~~~~c~~C~~~~~~~~   54 (103)
                      |.++|++++.--|+.||..|.....|-.|.+..+.                            ...|+|+.|..+....+
T Consensus       198 H~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTeklL~~Hv~rHvn~ykCplCdmtc~~~s  277 (467)
T KOG3608|consen  198 HIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATEKLLKSHVVRHVNCYKCPLCDMTCSSAS  277 (467)
T ss_pred             HHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHHHHHHHHHHHhhhcccccccccCCCChH
Confidence            34566666666666666666666666555432110                            24578999999999999


Q ss_pred             HHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          55 TLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        55 ~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .|..|++..|..++||+|..|+..+...++|.+|...|. +..|
T Consensus       278 sL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y  320 (467)
T KOG3608|consen  278 SLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVY  320 (467)
T ss_pred             HHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccce
Confidence            999986667888999999999999999999999999776 4434

>PHA02768 hypothetical protein; Provisional

Probab=99.23  E-value=4.6e-12  Score=58.12  Aligned_cols=43  Identities=16%  Similarity=0.226  Sum_probs=30.4

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTL   56 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l   56 (103)
                      .|.|+.||+.|...++|..|+++|+  +++.|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceeccccee
Confidence            3677777777777777777777776  567777777776655554

>KOG3608|consensus

Probab=99.18  E-value=3.3e-11  Score=73.87  Aligned_cols=89  Identities=19%  Similarity=0.510  Sum_probs=56.3

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhcCC--CCCeeCCCCCccc
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTG--QKPYPCRYCDYKA   79 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~--~~~~~c~~C~~~f   79 (103)
                      +-.|...+||+|+.|++.|...+.|..|..+|. +..|.|..  |...+.+...+.+|.+..|.|  ..+|.|-.|++.|
T Consensus       284 r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~f  362 (467)
T KOG3608|consen  284 RYRHSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFF  362 (467)
T ss_pred             HhhhccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhh
Confidence            334555666777777766666666776766665 55566655  666666666666664444433  3457777777777


Q ss_pred             cCcHHHHHHHHhhC
Q psy7454          80 RETQALKVHTKRYH   93 (103)
Q Consensus        80 ~~~~~l~~H~~~~~   93 (103)
                      ++-.+|.+|+..-+
T Consensus       363 t~G~~L~~HL~kkH  376 (467)
T KOG3608|consen  363 TSGKSLSAHLMKKH  376 (467)
T ss_pred             ccchhHHHHHHHhh
Confidence            77777777766543

>PHA02768 hypothetical protein; Provisional

Probab=99.13  E-value=3e-11  Score=55.42  Aligned_cols=43  Identities=14%  Similarity=0.331  Sum_probs=38.7

Q ss_pred             CeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHH
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL   85 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l   85 (103)
                      .|.|+.||+.|...+.|..| ++.|+  ++++|..|++.|...+.|
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H-~r~H~--k~~kc~~C~k~f~~~s~l   47 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITH-LRKHN--TNLKLSNCKRISLRTGEY   47 (55)
T ss_pred             ccCcchhCCeeccHHHHHHH-HHhcC--CcccCCcccceeccccee
Confidence            47899999999999999998 89998  689999999999977665

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.02  E-value=1.3e-09  Score=71.19  Aligned_cols=83  Identities=14%  Similarity=0.358  Sum_probs=65.1

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCcccc---------
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR---------   80 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~---------   80 (103)
                      +..+.|+.|+..|. ...|..|+.++.  +++.|+ ||..+ ....|..| +..+..++++.|..|+..+.         
T Consensus       451 ~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H-~~thCp~Kpi~C~fC~~~v~~g~~~~d~~  524 (567)
T PLN03086        451 KNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP-CGVVL-EKEQMVQH-QASTCPLRLITCRFCGDMVQAGGSAMDVR  524 (567)
T ss_pred             ccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-CCCCc-chhHHHhh-hhccCCCCceeCCCCCCccccCccccchh
Confidence            44678999998885 577899988874  788999 99755 56788887 78889999999999998884         


Q ss_pred             -CcHHHHHHHHhhCCCCCcc
Q psy7454          81 -ETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        81 -~~~~l~~H~~~~~~~~~~~   99 (103)
                       ..+.|..|.... |.+++.
T Consensus       525 d~~s~Lt~HE~~C-G~rt~~  543 (567)
T PLN03086        525 DRLRGMSEHESIC-GSRTAP  543 (567)
T ss_pred             hhhhhHHHHHHhc-CCcceE
Confidence             235788888874 666653

>PHA00733 hypothetical protein

Probab=99.02  E-value=7.1e-10  Score=60.09  Aligned_cols=51  Identities=22%  Similarity=0.389  Sum_probs=45.4

Q ss_pred             CCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHH
Q psy7454           8 AYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHH   60 (103)
Q Consensus         8 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~   60 (103)
                      .+..+|.|+.|++.|.....|..|++.+  ..++.|..|++.|.....|..|.
T Consensus        69 ~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~~~~~C~~CgK~F~~~~sL~~H~  119 (128)
T PHA00733         69 KAVSPYVCPLCLMPFSSSVSLKQHIRYT--EHSKVCPVCGKEFRNTDSTLDHV  119 (128)
T ss_pred             CCCCCccCCCCCCcCCCHHHHHHHHhcC--CcCccCCCCCCccCCHHHHHHHH
Confidence            3477999999999999999999999876  45789999999999999999983

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.97  E-value=5.3e-10  Score=44.20  Aligned_cols=23  Identities=39%  Similarity=0.947  Sum_probs=11.6

Q ss_pred             HHHHHhhcCCCCCeecCCCCccc
Q psy7454          28 IKRHLGMHLGEKPFTCNMCEFKC   50 (103)
Q Consensus        28 l~~h~~~h~~~~~~~c~~C~~~~   50 (103)
                      |..|+++|++++||.|+.|++.|
T Consensus         2 l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    2 LRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHSSSSSEEESSSSEEE
T ss_pred             HHHHhhhcCCCCCCCCCCCcCee
Confidence            44455555555555555555444

...

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.86  E-value=2.8e-09  Score=42.10  Aligned_cols=26  Identities=42%  Similarity=0.974  Sum_probs=22.8

Q ss_pred             HHHHHHHHhcCCCCCeeCCCCCccccC
Q psy7454          55 TLKAHHINIHTGQKPYPCRYCDYKARE   81 (103)
Q Consensus        55 ~l~~h~~~~h~~~~~~~c~~C~~~f~~   81 (103)
                      .|..| ++.|++++||.|+.|++.|..
T Consensus         1 ~l~~H-~~~H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRH-MRTHTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHH-HHHHSSSSSEEESSSSEEESS
T ss_pred             CHHHH-hhhcCCCCCCCCCCCcCeeCc
Confidence            36788 889999999999999999863

...

>PHA00616 hypothetical protein

Probab=98.86  E-value=1.4e-09  Score=47.68  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      ||.|+.||+.|...+.|..|++.|++++++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~   31 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT   31 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence            4677777777777777777777777777763

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.84  E-value=7.7e-09  Score=67.66  Aligned_cols=78  Identities=19%  Similarity=0.390  Sum_probs=62.6

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccC----------chHHHHHHHHhcCCCCCeeCCCCCcccc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRD----------NRTLKAHHINIHTGQKPYPCRYCDYKAR   80 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~----------~~~l~~h~~~~h~~~~~~~c~~C~~~f~   80 (103)
                      .++.|+ ||..+ ....|..|+.+|..++++.|..|+..+..          .+.|..| .... +.+++.|..||+.+.
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~H-E~~C-G~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEH-ESIC-GSRTAPCDSCGRSVM  552 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhhhhHHHH-HHhc-CCcceEccccCCeee
Confidence            578999 99755 56889999999999999999999988842          3478887 6664 889999999998766


Q ss_pred             CcHHHHHHHHhhC
Q psy7454          81 ETQALKVHTKRYH   93 (103)
Q Consensus        81 ~~~~l~~H~~~~~   93 (103)
                      . ..+..|+...|
T Consensus       553 l-rdm~~H~~~~h  564 (567)
T PLN03086        553 L-KEMDIHQIAVH  564 (567)
T ss_pred             e-hhHHHHHHHhh
Confidence            4 46677776644

>KOG3993|consensus

Probab=98.83  E-value=5.4e-10  Score=69.89  Aligned_cols=82  Identities=20%  Similarity=0.335  Sum_probs=65.5

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCC--------------------------
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG--------------------------   66 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~--------------------------   66 (103)
                      |.|..|...|.+...|.+|.-.-.-..-|.|++|++.|.-+.+|..| ++.|--                          
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC~RIV~vEYrCPEC~KVFsCPANLASH-RRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRCPRIVHVEYRCPECDKVFSCPANLASH-RRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccCCeeEEeeecCCcccccccCchhhhhh-hcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            78888988888888888886444444568899999999999999888 776621                          


Q ss_pred             -------CCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          67 -------QKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        67 -------~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                             +-.|.|..|++.|++...|+.|+.+|+..
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                   12489999999999999999998887643

>PHA00616 hypothetical protein

Probab=98.79  E-value=1.7e-09  Score=47.45  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=24.9

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      ||.|+.||+.|...+.|..|++.|++++++.|+.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            4677777777777777777777777777766653

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.53  E-value=3.6e-07  Score=42.34  Aligned_cols=50  Identities=26%  Similarity=0.458  Sum_probs=23.6

Q ss_pred             eecCCCCccccCchHHHHHHHHhcCCC-CCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          41 FTCNMCEFKCRDNRTLKAHHINIHTGQ-KPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        41 ~~c~~C~~~~~~~~~l~~h~~~~h~~~-~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |.|+.|++ ......|..|....|..+ +.+.|++|...+.  .+|..|+...+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            45555555 233344555544444433 2355555554322  25555555443

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.44  E-value=2.6e-07  Score=46.02  Aligned_cols=42  Identities=29%  Similarity=0.502  Sum_probs=34.4

Q ss_pred             ceeeCCCCCcccCchhHHHHHhh-cCCCCCeecCCCCccccCchHHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGM-HLGEKPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~-h~~~~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      ||.|+.|++.|.+...|..|++. |.+   +.|+.|++.|..   +..|
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~---~~C~~CgKsF~~---l~~H   43 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHTL---TKCPVCNKSYRR---LNQH   43 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccCC---CccCCCCCEeCC---hhhh
Confidence            57899999999999999999874 553   479999999874   5666

>PHA00732 hypothetical protein

Probab=98.41  E-value=3e-07  Score=45.77  Aligned_cols=46  Identities=30%  Similarity=0.472  Sum_probs=37.6

Q ss_pred             CeecCCCCccccCchHHHHHHHH-hcCCCCCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHIN-IHTGQKPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~-~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      ||.|..|++.|...+.|..| ++ .|.+   +.|..||+.|.   .+..|..+.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H-~r~~H~~---~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQH-ARRNHTL---TKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             CccCCCCCCccCCHHHHHHH-hhcccCC---CccCCCCCEeC---Chhhhhccc
Confidence            57899999999999999998 66 4653   58999999998   477777544

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.38  E-value=2.8e-07  Score=35.15  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=16.0

Q ss_pred             eeeCCCCCcccCchhHHHHHhh
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |.|+.|++.|.....|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            5677777777777777777665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.37  E-value=4e-07  Score=34.69  Aligned_cols=23  Identities=30%  Similarity=0.583  Sum_probs=16.9

Q ss_pred             eeCCCCCccccCcHHHHHHHHhh
Q psy7454          70 YPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      |.|..|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            56777777777777777777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.19  E-value=2.4e-06  Score=32.59  Aligned_cols=24  Identities=25%  Similarity=0.614  Sum_probs=16.7

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |.|+.|++.|.....|..|+.+++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            567788888888888888877664

...

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.13  E-value=7.1e-06  Score=37.96  Aligned_cols=46  Identities=20%  Similarity=0.465  Sum_probs=34.5

Q ss_pred             ceeeCCCCCcccCchhHHHHHh-hcCC-CCCeecCCCCccccCchHHHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLG-MHLG-EKPFTCNMCEFKCRDNRTLKAHH   60 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~-~h~~-~~~~~c~~C~~~~~~~~~l~~h~   60 (103)
                      .|.||.|++ ..+...|..|.. .|.. .+.+.|++|...+.  ..|..|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl   49 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHL   49 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHH
Confidence            589999999 456788999954 4554 35799999997543  4788873

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.09  E-value=3.5e-06  Score=33.30  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=18.2

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      +|.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4677777777777777777776653

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.07  E-value=3.4e-06  Score=33.32  Aligned_cols=25  Identities=24%  Similarity=0.523  Sum_probs=18.1

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      +|.|..|++.|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4677777777777777777776654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.98  E-value=2.4e-06  Score=52.38  Aligned_cols=53  Identities=36%  Similarity=0.763  Sum_probs=38.1

Q ss_pred             CCCeecCC--CCccccCchHHHHHHHHhc------------------CCCCCeeCCCCCccccCcHHHHHHHH
Q psy7454          38 EKPFTCNM--CEFKCRDNRTLKAHHINIH------------------TGQKPYPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        38 ~~~~~c~~--C~~~~~~~~~l~~h~~~~h------------------~~~~~~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      ++||.|++  |.+.|+....|+.|.+..|                  ...+||.|.+|++.+.....|+-|+.
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceeccc
Confidence            46677754  6677777777766633333                  23589999999999999999887765

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=97.98  E-value=7.9e-06  Score=42.16  Aligned_cols=73  Identities=18%  Similarity=0.287  Sum_probs=21.7

Q ss_pred             eeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          14 VCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        14 ~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      .|..|+..|.....|..|+....+...-..    ..+.....+... .... ....+.|..|++.|.....|..|+..+
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~----~~l~~~~~~~~~-~~~~-~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQ----KYLVDPNRLLNY-LRKK-VKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             ------------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             Cccccccccccccccccccccccccccccc----cccccccccccc-cccc-cCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            488999999999999999865433221111    111122222222 2221 223689999999999999999999974

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.96  E-value=7.7e-06  Score=31.09  Aligned_cols=23  Identities=17%  Similarity=0.496  Sum_probs=13.8

Q ss_pred             eeeCCCCCcccCchhHHHHHhhc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      |.|+.|+..|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            46677777777777777766543

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.88  E-value=2.7e-05  Score=35.08  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=11.0

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      |.+|++|+..+.+..+|.+|+....+
T Consensus        24 PatCP~C~a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   24 PATCPICGAVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             -EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred             CCCCCcchhhccchhhHHHHHHHHhc
Confidence            45555555555555555555544333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG3993|consensus

Probab=97.86  E-value=1e-05  Score=51.37  Aligned_cols=53  Identities=26%  Similarity=0.437  Sum_probs=44.2

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCC---------------------------------CCCeecCCCCccccCchHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLG---------------------------------EKPFTCNMCEFKCRDNRTLKA   58 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~---------------------------------~~~~~c~~C~~~~~~~~~l~~   58 (103)
                      -|.|+.|++.|.-..+|..|.|=|..                                 +..|.|..|++.|.....|+.
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK  374 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK  374 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence            49999999999999999999875521                                 123899999999999999999


Q ss_pred             HHHHhcC
Q psy7454          59 HHINIHT   65 (103)
Q Consensus        59 h~~~~h~   65 (103)
                      | +.+|.
T Consensus       375 H-qlthq  380 (500)
T KOG3993|consen  375 H-QLTHQ  380 (500)
T ss_pred             h-HHhhh
Confidence            8 66654

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=97.78  E-value=9.2e-06  Score=49.92  Aligned_cols=50  Identities=26%  Similarity=0.522  Sum_probs=42.0

Q ss_pred             CCceeeCC--CCCcccCchhHHHHHhhcC-------------------CCCCeecCCCCccccCchHHHHH
Q psy7454          10 RYKYVCFA--CKFYTYNTGNIKRHLGMHL-------------------GEKPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        10 ~~~~~C~~--C~~~f~~~~~l~~h~~~h~-------------------~~~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      ++||+|++  |++.+...-.|+.|+.-..                   ..+||.|.+|++.|+....|+.|
T Consensus       347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F~~~~KPYrCevC~KRYKNlNGLKYH  417 (423)
T COG5189         347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCDKRYKNLNGLKYH  417 (423)
T ss_pred             CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccccccCCceeccccchhhccCccceec
Confidence            47999998  9999999989999864311                   24899999999999999999887

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.77  E-value=5e-05  Score=34.24  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             CCCCeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          66 GQKPYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        66 ~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      .+.|-.|++|+..+.+..+|.+|+.+.++.+|
T Consensus        21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence            45577788888888888888888877776665

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.62  E-value=7.2e-05  Score=28.69  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=16.4

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |.|..|++.|.....+..|+..|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            356777777777777777776543

>PRK04860 hypothetical protein; Provisional

Probab=97.60  E-value=8.2e-05  Score=41.96  Aligned_cols=37  Identities=27%  Similarity=0.659  Sum_probs=22.2

Q ss_pred             CeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccC
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARE   81 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~   81 (103)
                      +|.|. |+.   ....+..| .+.+.++++|.|..|+..|..
T Consensus       119 ~Y~C~-C~~---~~~~~rrH-~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRH-NRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEcC-CCC---eeCHHHHH-HHHhcCCccEECCCCCceeEE
Confidence            46665 664   34445555 566666666667666665553

>smart00355 ZnF_C2H2 zinc finger

Probab=97.53  E-value=7.3e-05  Score=28.67  Aligned_cols=23  Identities=26%  Similarity=0.521  Sum_probs=14.3

Q ss_pred             eeeCCCCCcccCchhHHHHHhhc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H   23 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTH   23 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHh
Confidence            35666666666666666666544

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.48  E-value=0.0001  Score=28.35  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=15.3

Q ss_pred             eeeCCCCCcccCchhHHHHHhh
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |.|..|+..|.+...|..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4677777777777777777654

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.34  E-value=0.00022  Score=27.18  Aligned_cols=23  Identities=43%  Similarity=0.833  Sum_probs=15.1

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |.|..|+.... ...|..|++.++
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~H   23 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRHH   23 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhhC
Confidence            56777777776 777777777754

>PRK04860 hypothetical protein; Provisional

Probab=97.30  E-value=0.00033  Score=39.55  Aligned_cols=38  Identities=24%  Similarity=0.498  Sum_probs=28.3

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRD   52 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~   52 (103)
                      .+|.|. |+.   ....+..|.+++.++++|.|..|+..+..
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            468887 875   45567788888888888888888876654

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.30  E-value=0.00024  Score=27.28  Aligned_cols=22  Identities=18%  Similarity=0.546  Sum_probs=14.8

Q ss_pred             eeCCCCCccccCcHHHHHHHHh
Q psy7454          70 YPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      |.|..|+..|.....+..|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            4566777777777777776654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.09  E-value=0.00021  Score=28.13  Aligned_cols=22  Identities=27%  Similarity=0.629  Sum_probs=15.8

Q ss_pred             eeeCCCCCcccCchhHHHHHhh
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |.|..|++.|.+...+..|+++
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            5677777777777777777654

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=96.80  E-value=0.0011  Score=25.15  Aligned_cols=21  Identities=43%  Similarity=0.803  Sum_probs=11.7

Q ss_pred             eeeCCCCCcccCchhHHHHHhh
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |.|+.|+.... ...|..|++.
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHh
Confidence            45666766655 5566666654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=96.56  E-value=0.00069  Score=26.60  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=13.5

Q ss_pred             eeCCCCCccccCcHHHHHHHHh
Q psy7454          70 YPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      |.|..|++.|.....+..|+.+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            4566666666666666665543

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.17  E-value=0.0061  Score=23.50  Aligned_cols=19  Identities=37%  Similarity=0.739  Sum_probs=10.5

Q ss_pred             eCCCCCccccCcHHHHHHHH
Q psy7454          71 PCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        71 ~c~~C~~~f~~~~~l~~H~~   90 (103)
                      .|+.||+.| ....|..|+.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~   22 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEK   22 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHH
Confidence            466666666 4445555543

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.00  E-value=0.0071  Score=24.99  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=16.8

Q ss_pred             ceeeCCCCCcccCchhHHHHHhh
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      +|.|+.|+..|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            47788888888877777777643

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.83  E-value=0.0049  Score=28.38  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=22.8

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      -.||.-+.|+.||..|....++.+|.-..+
T Consensus        12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNKaH   41 (65)
T COG4049          12 RDGEEFLRCPRCGMVFRRRKDYIRHVNKAH   41 (65)
T ss_pred             cCCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence            346777788888888888888888876544

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=95.60  E-value=0.0062  Score=28.04  Aligned_cols=28  Identities=14%  Similarity=0.157  Sum_probs=21.6

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHh
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLG   33 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~   33 (103)
                      +..|+..+.|+.||..|.....+..|..
T Consensus        11 ~RDGE~~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          11 DRDGEEFLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             ccCCceeeeCCchhHHHHHhHHHHHHhh
Confidence            4567777888888888888877877754

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=95.40  E-value=0.012  Score=31.12  Aligned_cols=30  Identities=23%  Similarity=0.588  Sum_probs=19.6

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDN   53 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~   53 (103)
                      -.|+.||..|+.           .+..|.+|+.||..|...
T Consensus        10 R~Cp~CG~kFYD-----------Lnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYD-----------LNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhcc-----------CCCCCccCCCCCCccCcc
Confidence            467777777764           224666777777766655

The function of members of this family is unknown.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=95.34  E-value=0.019  Score=23.60  Aligned_cols=10  Identities=40%  Similarity=1.062  Sum_probs=6.0

Q ss_pred             eeeCCCCCcc
Q psy7454          13 YVCFACKFYT   22 (103)
Q Consensus        13 ~~C~~C~~~f   22 (103)
                      |.|.+||..+
T Consensus         2 ~~C~~CGy~y   11 (33)
T cd00350           2 YVCPVCGYIY   11 (33)
T ss_pred             EECCCCCCEE
Confidence            5666666554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>KOG1146|consensus

Probab=95.16  E-value=0.0098  Score=43.34  Aligned_cols=79  Identities=20%  Similarity=0.416  Sum_probs=47.4

Q ss_pred             CCCCceeeCCCCCcccCchhHHHHHhhcC-CCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHH
Q psy7454           8 AYRYKYVCFACKFYTYNTGNIKRHLGMHL-GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK   86 (103)
Q Consensus         8 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~-~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~   86 (103)
                      .-.+-+.|+.|+..|.....|..|+++-. ..+.   .+|.-+-.... +.+- ...-.+.++|.|..|...+.....|.
T Consensus       461 S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~~gq~~~~-~arg-~~~~~~~~p~~C~~C~~stttng~Ls  535 (1406)
T KOG1146|consen  461 SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCKAGQNHPR-LARG-EVYRCPGKPYPCRACNYSTTTNGNLS  535 (1406)
T ss_pred             cccccccCCccchhhhhHHHhhhcccccccccch---hHhHhcccccc-cccc-ccccCCCCcccceeeeeeeecchHHH
Confidence            33456888888888888888888887632 2221   22211100000 0000 11123457889999999999989999


Q ss_pred             HHHHh
Q psy7454          87 VHTKR   91 (103)
Q Consensus        87 ~H~~~   91 (103)
                      +|+..
T Consensus       536 ihlqS  540 (1406)
T KOG1146|consen  536 IHLQS  540 (1406)
T ss_pred             HHHHH
Confidence            99775

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.88  E-value=0.0067  Score=38.71  Aligned_cols=58  Identities=24%  Similarity=0.464  Sum_probs=33.0

Q ss_pred             CeecCCCCccccCchHHHHHHHH--hcCCC--CCeeCC--CCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHIN--IHTGQ--KPYPCR--YCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~--~h~~~--~~~~c~--~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      ++.|..|...+.....+..| ..  .|.++  +++.|.  .|++.|.+...+..|..++.+..++
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~-~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRH-LRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPA  352 (467)
T ss_pred             CCCCccccCCcccccccccc-ccccccccccCCceeeeccCCCccccccccccCCcccccCCCcc
Confidence            34555566666666555555 44  45555  566665  4666666666666665555554443

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.68  E-value=0.049  Score=27.78  Aligned_cols=25  Identities=24%  Similarity=0.624  Sum_probs=19.7

Q ss_pred             CCeecCCCCccccCchHHHHHHHHhc
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAHHINIH   64 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h~~~~h   64 (103)
                      ..+.|..|+..|.+...|..| ++.+
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~H-m~~~   73 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEH-MRSK   73 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHH-HHHT
T ss_pred             CCCCCCccCCCCcCHHHHHHH-HcCc
Confidence            478999999999999999998 5543

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.67  E-value=0.01  Score=37.87  Aligned_cols=62  Identities=32%  Similarity=0.536  Sum_probs=52.6

Q ss_pred             CceeeCCCCCcccCchhHHHHHh--hcCCC--CCeecC--CCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLG--MHLGE--KPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~--~h~~~--~~~~c~--~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      .++.|..|...|.....+..|.+  .|.++  +++.|+  .|++.+.....+..| ...|.+..+..+.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  355 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRH-ILLHTSISPAKEK  355 (467)
T ss_pred             cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCC-cccccCCCccccc
Confidence            36889999999999999999998  79999  999999  799999999998887 7778776655544

>TIGR00622 ssl1 transcription factor ssl1

Probab=94.50  E-value=0.094  Score=27.94  Aligned_cols=80  Identities=14%  Similarity=0.131  Sum_probs=51.6

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhc-----CCC-------CCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCcc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMH-----LGE-------KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYK   78 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h-----~~~-------~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~   78 (103)
                      -|..|+.||-.......|.+....-     ..+       ....|-.|...|........   ..-.....|.|..|...
T Consensus        14 LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~---~~~~~~~~y~C~~C~~~   90 (112)
T TIGR00622        14 LPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF---DELKDSHRYVCAVCKNV   90 (112)
T ss_pred             CCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc---cccccccceeCCCCCCc
Confidence            4788999998888887777542110     011       11247788877765432111   00122347999999999


Q ss_pred             ccCcHHHHHHHHhhC
Q psy7454          79 ARETQALKVHTKRYH   93 (103)
Q Consensus        79 f~~~~~l~~H~~~~~   93 (103)
                      |-..-+.-.|...|.
T Consensus        91 FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        91 FCVDCDVFVHESLHC  105 (112)
T ss_pred             cccccchhhhhhccC
Confidence            999999889988875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=94.11  E-value=0.079  Score=22.38  Aligned_cols=12  Identities=17%  Similarity=0.390  Sum_probs=6.4

Q ss_pred             CCeeCCCCCccc
Q psy7454          68 KPYPCRYCDYKA   79 (103)
Q Consensus        68 ~~~~c~~C~~~f   79 (103)
                      ....|..|+..|
T Consensus        24 ~~vrC~~C~~~f   35 (37)
T PF13719_consen   24 RKVRCPKCGHVF   35 (37)
T ss_pred             cEEECCCCCcEe
Confidence            344566665554

>KOG2186|consensus

Probab=94.09  E-value=0.036  Score=33.57  Aligned_cols=44  Identities=18%  Similarity=0.398  Sum_probs=30.2

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHH
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      |.|.+||.... +..+..|+....+ .-|.|..|+..|... ....|
T Consensus         4 FtCnvCgEsvK-Kp~vekH~srCrn-~~fSCIDC~k~F~~~-sYknH   47 (276)
T KOG2186|consen    4 FTCNVCGESVK-KPQVEKHMSRCRN-AYFSCIDCGKTFERV-SYKNH   47 (276)
T ss_pred             Eehhhhhhhcc-ccchHHHHHhccC-CeeEEeecccccccc-hhhhh
Confidence            77888887764 3456678766555 668888888888773 34454

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.00  E-value=0.019  Score=34.10  Aligned_cols=44  Identities=16%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhh---c-------CCCCC-----eecCCCCccccCc
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGM---H-------LGEKP-----FTCNMCEFKCRDN   53 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~---h-------~~~~~-----~~c~~C~~~~~~~   53 (103)
                      ++...||+|+..|..+.......+.   .       .+..|     .+|+.||.++...
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence            3468999999999876554444332   1       12333     3788898766544

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=93.63  E-value=0.063  Score=29.14  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=21.7

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchH
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRT   55 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~   55 (103)
                      ..|+.||+.|+.           .++.|..|+.||..+.....
T Consensus        10 r~Cp~cg~kFYD-----------Lnk~p~vcP~cg~~~~~~~~   41 (129)
T TIGR02300        10 RICPNTGSKFYD-----------LNRRPAVSPYTGEQFPPEEA   41 (129)
T ss_pred             ccCCCcCccccc-----------cCCCCccCCCcCCccCcchh
Confidence            478888888764           23467788888877655533

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>KOG2231|consensus

Probab=93.47  E-value=0.12  Score=35.71  Aligned_cols=77  Identities=14%  Similarity=0.086  Sum_probs=43.3

Q ss_pred             cCchhHHHHHh-hcCCCCCe-------ecCCCCccccCchHHHHHHHHhcCCCCC----eeCCCCCccccCcHHHHHHHH
Q psy7454          23 YNTGNIKRHLG-MHLGEKPF-------TCNMCEFKCRDNRTLKAHHINIHTGQKP----YPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        23 ~~~~~l~~h~~-~h~~~~~~-------~c~~C~~~~~~~~~l~~h~~~~h~~~~~----~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      .....|+.|++ .|..-...       .+..+.+. -....|..|++....+++.    -.|..|...|.....+.+|++
T Consensus       125 ~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~-Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~  203 (669)
T KOG2231|consen  125 KSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKL-YTRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLR  203 (669)
T ss_pred             hHHHHHHHHHHHhhhhhccccccccceeeeeeeeh-ehHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhc
Confidence            35677888874 34221111       12222333 3445566664443332221    357788888888888888888


Q ss_pred             hhCCCCCccc
Q psy7454          91 RYHPKMYDVE  100 (103)
Q Consensus        91 ~~~~~~~~~~  100 (103)
                      ..+...-|++
T Consensus       204 ~~h~~chfC~  213 (669)
T KOG2231|consen  204 FDHEFCHFCD  213 (669)
T ss_pred             cceeheeecC
Confidence            7765555554

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.44  E-value=0.12  Score=21.78  Aligned_cols=10  Identities=20%  Similarity=0.351  Sum_probs=4.9

Q ss_pred             eeCCCCCccc
Q psy7454          70 YPCRYCDYKA   79 (103)
Q Consensus        70 ~~c~~C~~~f   79 (103)
                      ..|+.|+..|
T Consensus        26 v~C~~C~~~~   35 (38)
T TIGR02098        26 VRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEE
Confidence            4455555443

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=93.21  E-value=0.1  Score=24.45  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             CCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCc
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDY   77 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~   77 (103)
                      -.|.|+.||........-      .-....+|.|+.||.
T Consensus        26 v~F~CPnCGe~~I~Rc~~------CRk~g~~Y~Cp~CGF   58 (61)
T COG2888          26 VKFPCPNCGEVEIYRCAK------CRKLGNPYRCPKCGF   58 (61)
T ss_pred             eEeeCCCCCceeeehhhh------HHHcCCceECCCcCc
Confidence            347788888554443321      111345788888874

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=93.12  E-value=0.17  Score=21.22  Aligned_cols=12  Identities=33%  Similarity=0.648  Sum_probs=6.1

Q ss_pred             ecCCCCccccCc
Q psy7454          42 TCNMCEFKCRDN   53 (103)
Q Consensus        42 ~c~~C~~~~~~~   53 (103)
                      .|+.|+..|.-.
T Consensus         4 ~Cp~C~~~y~i~   15 (36)
T PF13717_consen    4 TCPNCQAKYEID   15 (36)
T ss_pred             ECCCCCCEEeCC
Confidence            455555555443

>KOG2186|consensus

Probab=92.79  E-value=0.095  Score=31.82  Aligned_cols=54  Identities=22%  Similarity=0.398  Sum_probs=36.1

Q ss_pred             eecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          41 FTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        41 ~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      |.|.+||.....+. +.+| +....+ .-|.|.-|+..|-. -++..|....+....|
T Consensus         4 FtCnvCgEsvKKp~-vekH-~srCrn-~~fSCIDC~k~F~~-~sYknH~kCITEaQKY   57 (276)
T KOG2186|consen    4 FTCNVCGESVKKPQ-VEKH-MSRCRN-AYFSCIDCGKTFER-VSYKNHTKCITEAQKY   57 (276)
T ss_pred             Eehhhhhhhccccc-hHHH-HHhccC-CeeEEeeccccccc-chhhhhhhhcchHHHh
Confidence            67888887666554 4556 555544 56788888888877 6777777766655444

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=92.41  E-value=0.15  Score=21.13  Aligned_cols=11  Identities=27%  Similarity=0.851  Sum_probs=6.9

Q ss_pred             ceeeCCCCCcc
Q psy7454          12 KYVCFACKFYT   22 (103)
Q Consensus        12 ~~~C~~C~~~f   22 (103)
                      .|.|..||..+
T Consensus         2 ~~~C~~CG~i~   12 (34)
T cd00729           2 VWVCPVCGYIH   12 (34)
T ss_pred             eEECCCCCCEe
Confidence            36677777554

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=92.10  E-value=0.13  Score=29.46  Aligned_cols=24  Identities=29%  Similarity=0.917  Sum_probs=15.5

Q ss_pred             CeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCc
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDY   77 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~   77 (103)
                      -++|.+||..              +.++.|..|+.||-
T Consensus       134 ~~vC~vCGy~--------------~~ge~P~~CPiCga  157 (166)
T COG1592         134 VWVCPVCGYT--------------HEGEAPEVCPICGA  157 (166)
T ss_pred             EEEcCCCCCc--------------ccCCCCCcCCCCCC
Confidence            5778888742              22466777888873

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=92.06  E-value=0.072  Score=24.14  Aligned_cols=31  Identities=26%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEF   48 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~   48 (103)
                      +-|.|..||..|.....+      .. .....|+.||.
T Consensus         4 Yey~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (52)
T TIGR02605         4 YEYRCTACGHRFEVLQKM------SD-DPLATCPECGG   34 (52)
T ss_pred             EEEEeCCCCCEeEEEEec------CC-CCCCCCCCCCC
Confidence            347888888777543211      11 34456888875

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=92.01  E-value=0.22  Score=21.94  Aligned_cols=26  Identities=19%  Similarity=0.581  Sum_probs=14.0

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCcc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFK   49 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~   49 (103)
                      |.|..||..|...           ...+..|+.||..
T Consensus         3 Y~C~~Cg~~~~~~-----------~~~~irC~~CG~r   28 (44)
T smart00659        3 YICGECGRENEIK-----------SKDVVRCRECGYR   28 (44)
T ss_pred             EECCCCCCEeecC-----------CCCceECCCCCce
Confidence            5666666655321           2344566666643

present in RNA polymerase I, II and III

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=91.93  E-value=0.22  Score=22.01  Aligned_cols=10  Identities=30%  Similarity=0.640  Sum_probs=6.0

Q ss_pred             eeeCCCCCcc
Q psy7454          13 YVCFACKFYT   22 (103)
Q Consensus        13 ~~C~~C~~~f   22 (103)
                      |.|+.||..|
T Consensus         4 y~C~~CG~~~   13 (46)
T PRK00398          4 YKCARCGREV   13 (46)
T ss_pred             EECCCCCCEE
Confidence            5666666554

>KOG2893|consensus

Probab=91.70  E-value=0.059  Score=32.51  Aligned_cols=47  Identities=23%  Similarity=0.484  Sum_probs=36.3

Q ss_pred             eCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcC
Q psy7454          15 CFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT   65 (103)
Q Consensus        15 C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~   65 (103)
                      |=.|++.|..+..|..|++.    +-|.|-+|.+.+.+-..|..|.+.+|-
T Consensus        13 cwycnrefddekiliqhqka----khfkchichkkl~sgpglsihcmqvhk   59 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLFSGPGLSIHCMQVHK   59 (341)
T ss_pred             eeecccccchhhhhhhhhhh----ccceeeeehhhhccCCCceeehhhhhh
Confidence            66799999988888888653    557899998888887777777666653

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=91.24  E-value=0.17  Score=28.64  Aligned_cols=35  Identities=14%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             cCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccc
Q psy7454          35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKA   79 (103)
Q Consensus        35 h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f   79 (103)
                      .....-|.|+.|+..|.....+.          ..|.|+.||...
T Consensus       104 e~~~~~Y~Cp~c~~r~tf~eA~~----------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       104 ETNNMFFICPNMCVRFTFNEAME----------LNFTCPRCGAML  138 (158)
T ss_pred             ccCCCeEECCCCCcEeeHHHHHH----------cCCcCCCCCCEe
Confidence            34455678888887776644431          247888888643

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=90.76  E-value=0.12  Score=22.03  Aligned_cols=30  Identities=23%  Similarity=0.312  Sum_probs=16.1

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCc
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEF   48 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~   48 (103)
                      -|.|+.||..|......      .. .....|+.||.
T Consensus         5 ~y~C~~Cg~~fe~~~~~------~~-~~~~~CP~Cg~   34 (41)
T smart00834        5 EYRCEDCGHTFEVLQKI------SD-DPLATCPECGG   34 (41)
T ss_pred             EEEcCCCCCEEEEEEec------CC-CCCCCCCCCCC
Confidence            46777777766432221      11 33446777775

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=90.61  E-value=0.31  Score=22.87  Aligned_cols=33  Identities=21%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             CCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCc
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDY   77 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~   77 (103)
                      -.|.|+.||........-      --....+|.|+.||.
T Consensus        24 ~~F~CPnCG~~~I~RC~~------CRk~~~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCEK------CRKQSNPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEeechh------HHhcCCceECCCCCC
Confidence            447888888763332211      111246788888884

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.42  E-value=0.18  Score=29.20  Aligned_cols=33  Identities=15%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             CCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccc
Q psy7454          37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKA   79 (103)
Q Consensus        37 ~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f   79 (103)
                      ...-|.|+.|+..|.....+          +..|.|+.||...
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~----------~~~F~Cp~Cg~~L  146 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAM----------EYGFRCPQCGEML  146 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHh----------hcCCcCCCCCCCC
Confidence            34557777777766554332          1247777777543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=90.38  E-value=0.72  Score=25.79  Aligned_cols=39  Identities=13%  Similarity=0.335  Sum_probs=24.8

Q ss_pred             CCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCcccc
Q psy7454          37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR   80 (103)
Q Consensus        37 ~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~   80 (103)
                      ...-|.|+.|+..|.....+.    .... ...|.|+.||....
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~----~~d~-~~~f~Cp~Cg~~l~  134 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQ----LLDM-DGTFTCPRCGEELE  134 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHH----hcCC-CCcEECCCCCCEEE
Confidence            445689999998887644321    1122 33489999997543

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=89.75  E-value=0.21  Score=21.70  Aligned_cols=30  Identities=20%  Similarity=0.453  Sum_probs=16.8

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCc
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEF   48 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~   48 (103)
                      -|.|..||..|.....      ... ..+..|+.||.
T Consensus         5 ey~C~~Cg~~fe~~~~------~~~-~~~~~CP~Cg~   34 (42)
T PF09723_consen    5 EYRCEECGHEFEVLQS------ISE-DDPVPCPECGS   34 (42)
T ss_pred             EEEeCCCCCEEEEEEE------cCC-CCCCcCCCCCC
Confidence            4777777777643221      111 34456777775

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2

Probab=89.71  E-value=0.24  Score=20.80  Aligned_cols=9  Identities=22%  Similarity=0.556  Sum_probs=5.0

Q ss_pred             eeCCCCCcc
Q psy7454          14 VCFACKFYT   22 (103)
Q Consensus        14 ~C~~C~~~f   22 (103)
                      .|+.||..|
T Consensus         3 ~C~~Cg~~Y   11 (36)
T PF05191_consen    3 ICPKCGRIY   11 (36)
T ss_dssp             EETTTTEEE
T ss_pred             CcCCCCCcc
Confidence            455565554

7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....

>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins

Probab=89.36  E-value=0.21  Score=27.48  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=17.3

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      +....|.+||+.|..   |++|++.|+|-.|
T Consensus        70 ~d~i~clecGk~~k~---LkrHL~~~~gltp   97 (132)
T PF05443_consen   70 PDYIICLECGKKFKT---LKRHLRTHHGLTP   97 (132)
T ss_dssp             SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred             cCeeEEccCCcccch---HHHHHHHccCCCH
Confidence            334689999998886   5899999987654

The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.

>PHA00626 hypothetical protein

Probab=89.17  E-value=0.37  Score=22.34  Aligned_cols=15  Identities=13%  Similarity=0.567  Sum_probs=9.3

Q ss_pred             CCCeecCCCCccccC
Q psy7454          38 EKPFTCNMCEFKCRD   52 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~   52 (103)
                      ...|.|..||..|..
T Consensus        21 snrYkCkdCGY~ft~   35 (59)
T PHA00626         21 SDDYVCCDCGYNDSK   35 (59)
T ss_pred             CcceEcCCCCCeech
Confidence            455677777765544

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=88.90  E-value=0.48  Score=24.98  Aligned_cols=26  Identities=27%  Similarity=0.668  Sum_probs=23.5

Q ss_pred             CeeC----CCCCccccCcHHHHHHHHhhCC
Q psy7454          69 PYPC----RYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        69 ~~~c----~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      .|.|    ..|+....+...+..|.+.+||
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            3889    9999999999999999998875

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.53  E-value=0.72  Score=29.61  Aligned_cols=75  Identities=28%  Similarity=0.599  Sum_probs=51.4

Q ss_pred             eeCCCCCcccCchhHHHHHhhcCCCCCeecCCCC----ccccCchHHHHHHHHhcCCCCCeeCCC--CC----ccccCcH
Q psy7454          14 VCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRY--CD----YKARETQ   83 (103)
Q Consensus        14 ~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~----~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~----~~f~~~~   83 (103)
                      .|..|...|.+...|..|++... ++-+.|+.-+    +-|+.-..|..|     ...-.|.|.+  |-    .+|....
T Consensus       222 ~C~FC~~~FYdDDEL~~HcR~~H-E~ChICD~v~p~~~QYFK~Y~~Le~H-----F~~~hy~ct~qtc~~~k~~vf~~~~  295 (493)
T COG5236         222 LCIFCKIYFYDDDELRRHCRLRH-EACHICDMVGPIRYQYFKSYEDLEAH-----FRNAHYCCTFQTCRVGKCYVFPYHT  295 (493)
T ss_pred             hhhhccceecChHHHHHHHHhhh-hhhhhhhccCccchhhhhCHHHHHHH-----hhcCceEEEEEEEecCcEEEeccHH
Confidence            59999999999999999988743 6666666544    234444555554     3333455542  22    4789999


Q ss_pred             HHHHHHHhhCC
Q psy7454          84 ALKVHTKRYHP   94 (103)
Q Consensus        84 ~l~~H~~~~~~   94 (103)
                      .|..|+...++
T Consensus       296 el~~h~~~~h~  306 (493)
T COG5236         296 ELLEHLTRFHK  306 (493)
T ss_pred             HHHHHHHHHhh
Confidence            99999887654

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.89  E-value=0.58  Score=20.31  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=11.4

Q ss_pred             CCeeCCCCCccccC----cHHHHHHHH
Q psy7454          68 KPYPCRYCDYKARE----TQALKVHTK   90 (103)
Q Consensus        68 ~~~~c~~C~~~f~~----~~~l~~H~~   90 (103)
                      ....|..|++.+..    .+.|..|++
T Consensus        15 ~~a~C~~C~~~~~~~~~~ts~l~~HL~   41 (45)
T PF02892_consen   15 KKAKCKYCGKVIKYSSGGTSNLKRHLK   41 (45)
T ss_dssp             S-EEETTTTEE-----SSTHHHHHHHH
T ss_pred             CeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence            34566666665554    356666664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.31  E-value=0.15  Score=20.23  Aligned_cols=9  Identities=22%  Similarity=0.567  Sum_probs=4.4

Q ss_pred             ecCCCCccc
Q psy7454          42 TCNMCEFKC   50 (103)
Q Consensus        42 ~c~~C~~~~   50 (103)
                      .|..|++.|
T Consensus         2 sCiDC~~~F   10 (28)
T PF08790_consen    2 SCIDCSKDF   10 (28)
T ss_dssp             EETTTTEEE
T ss_pred             eeecCCCCc
Confidence            344555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.76  E-value=0.67  Score=24.60  Aligned_cols=26  Identities=12%  Similarity=0.064  Sum_probs=16.9

Q ss_pred             eeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccc
Q psy7454          14 VCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKC   50 (103)
Q Consensus        14 ~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~   50 (103)
                      .|+.||+.|+.           ....|.+|+.||+.|
T Consensus        11 idPetg~KFYD-----------LNrdPiVsPytG~s~   36 (129)
T COG4530          11 IDPETGKKFYD-----------LNRDPIVSPYTGKSY   36 (129)
T ss_pred             cCccccchhhc-----------cCCCccccCcccccc
Confidence            56777776653           234666777777777

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=86.27  E-value=0.72  Score=20.85  Aligned_cols=11  Identities=27%  Similarity=0.618  Sum_probs=6.2

Q ss_pred             ceeeCCCCCcc
Q psy7454          12 KYVCFACKFYT   22 (103)
Q Consensus        12 ~~~C~~C~~~f   22 (103)
                      .|.|..||+.|
T Consensus         6 ~Y~C~~Cg~~~   16 (49)
T COG1996           6 EYKCARCGREV   16 (49)
T ss_pred             EEEhhhcCCee
Confidence            45566665554

>PF14353 CpXC: CpXC protein

Probab=86.07  E-value=0.11  Score=28.20  Aligned_cols=47  Identities=21%  Similarity=0.157  Sum_probs=25.2

Q ss_pred             eeeCCCCCcccCchhHHHH--------HhhcC-CCCCeecCCCCccccCchHHHHH
Q psy7454          13 YVCFACKFYTYNTGNIKRH--------LGMHL-GEKPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h--------~~~h~-~~~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      .+|+.|+..|.........        .++-. .--.+.|+.||..+.....+..|
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~~p~lY~   57 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLEYPLLYH   57 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecCCCEEEE
Confidence            4688998877542110000        01111 12347899999877666555443

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=85.90  E-value=0.19  Score=28.44  Aligned_cols=15  Identities=13%  Similarity=0.239  Sum_probs=10.3

Q ss_pred             eecCCCCccccCchH
Q psy7454          41 FTCNMCEFKCRDNRT   55 (103)
Q Consensus        41 ~~c~~C~~~~~~~~~   55 (103)
                      +.|+.||..|.....
T Consensus        29 ~~c~~c~~~f~~~e~   43 (154)
T PRK00464         29 RECLACGKRFTTFER   43 (154)
T ss_pred             eeccccCCcceEeEe
Confidence            678888877766543

>smart00614 ZnF_BED BED zinc finger

Probab=85.61  E-value=1.3  Score=19.86  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=11.9

Q ss_pred             eeCCCCCccccCc-----HHHHHHHH
Q psy7454          70 YPCRYCDYKARET-----QALKVHTK   90 (103)
Q Consensus        70 ~~c~~C~~~f~~~-----~~l~~H~~   90 (103)
                      -.|..|++.+...     +.|.+|+.
T Consensus        19 a~C~~C~~~l~~~~~~gTs~L~rHl~   44 (50)
T smart00614       19 AKCKYCGKKLSRSSKGGTSNLRRHLR   44 (50)
T ss_pred             EEecCCCCEeeeCCCCCcHHHHHHHH
Confidence            3566666555443     46666666

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=85.15  E-value=1.1  Score=17.25  Aligned_cols=19  Identities=16%  Similarity=0.396  Sum_probs=11.2

Q ss_pred             eCCCCCccccCcHHHHHHHH
Q psy7454          71 PCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        71 ~c~~C~~~f~~~~~l~~H~~   90 (103)
                      .|++|++.+ ....+..|+.
T Consensus         3 ~CPiC~~~v-~~~~in~HLD   21 (26)
T smart00734        3 QCPVCFREV-PENLINSHLD   21 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHHH
Confidence            466676665 4455566654

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>KOG2593|consensus

Probab=84.59  E-value=0.91  Score=29.88  Aligned_cols=33  Identities=21%  Similarity=0.435  Sum_probs=14.1

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE   47 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~   47 (103)
                      .|.|+.|++.|..   |.+-+..-.....|.|..|+
T Consensus       128 ~Y~Cp~C~kkyt~---Lea~~L~~~~~~~F~C~~C~  160 (436)
T KOG2593|consen  128 GYVCPNCQKKYTS---LEALQLLDNETGEFHCENCG  160 (436)
T ss_pred             cccCCccccchhh---hHHHHhhcccCceEEEecCC
Confidence            4555555554432   33333333333344555554

>KOG4173|consensus

Probab=83.66  E-value=0.32  Score=28.83  Aligned_cols=78  Identities=26%  Similarity=0.463  Sum_probs=49.7

Q ss_pred             eeeCC--CCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcC---------CCCCeeCC--CCCccc
Q psy7454          13 YVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT---------GQKPYPCR--YCDYKA   79 (103)
Q Consensus        13 ~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~---------~~~~~~c~--~C~~~f   79 (103)
                      +.|++  |-..|..-..+..|..+-.+   -.|+.|.+.|.+...|..|+...|.         |.--|.|.  .|+..|
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~dMy~ClvEgCt~KF  156 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYHTLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQDMYQCLVEGCTEKF  156 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhhhccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCccHHHHHHHhhhhhh
Confidence            55666  44555555555555433222   2589999999888888777443332         33347775  488889


Q ss_pred             cCcHHHHHHHHhhC
Q psy7454          80 RETQALKVHTKRYH   93 (103)
Q Consensus        80 ~~~~~l~~H~~~~~   93 (103)
                      .+...-+.|+-..+
T Consensus       157 kT~r~RkdH~I~~H  170 (253)
T KOG4173|consen  157 KTSRDRKDHMIRMH  170 (253)
T ss_pred             hhhhhhhhHHHHhc
Confidence            88888888876543

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=83.43  E-value=1.9  Score=17.60  Aligned_cols=10  Identities=30%  Similarity=0.753  Sum_probs=4.8

Q ss_pred             eeeCCCCCcc
Q psy7454          13 YVCFACKFYT   22 (103)
Q Consensus        13 ~~C~~C~~~f   22 (103)
                      |.|..||..+
T Consensus         1 Y~C~~Cg~~~   10 (32)
T PF03604_consen    1 YICGECGAEV   10 (32)
T ss_dssp             EBESSSSSSE
T ss_pred             CCCCcCCCee
Confidence            3455555443

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>COG4957 Predicted transcriptional regulator [Transcription]

Probab=83.33  E-value=0.77  Score=25.34  Aligned_cols=25  Identities=20%  Similarity=0.001  Sum_probs=19.0

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      ..|.++|+.|.+   |++|+.+|++-.|
T Consensus        77 IicLEDGkkfKS---LKRHL~t~~gmTP  101 (148)
T COG4957          77 IICLEDGKKFKS---LKRHLTTHYGLTP  101 (148)
T ss_pred             EEEeccCcchHH---HHHHHhcccCCCH
Confidence            478888888764   7888888876554

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.62  E-value=1.2  Score=19.33  Aligned_cols=12  Identities=17%  Similarity=0.562  Sum_probs=6.1

Q ss_pred             CCCeecCCCCcc
Q psy7454          38 EKPFTCNMCEFK   49 (103)
Q Consensus        38 ~~~~~c~~C~~~   49 (103)
                      ...+.|..||..
T Consensus        17 ~g~~vC~~CG~V   28 (43)
T PF08271_consen   17 RGELVCPNCGLV   28 (43)
T ss_dssp             TTEEEETTT-BB
T ss_pred             CCeEECCCCCCE
Confidence            344566666644

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>KOG2893|consensus

Probab=82.58  E-value=0.29  Score=29.65  Aligned_cols=41  Identities=27%  Similarity=0.557  Sum_probs=31.9

Q ss_pred             cCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHH
Q psy7454          43 CNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH   88 (103)
Q Consensus        43 c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H   88 (103)
                      |=+|...|.....|.+| +    ..+.|+|-+|-+..-+--.|..|
T Consensus        13 cwycnrefddekiliqh-q----kakhfkchichkkl~sgpglsih   53 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQH-Q----KAKHFKCHICHKKLFSGPGLSIH   53 (341)
T ss_pred             eeecccccchhhhhhhh-h----hhccceeeeehhhhccCCCceee
Confidence            66799999999988887 4    45678999998876666666665

>KOG4173|consensus

Probab=82.34  E-value=0.69  Score=27.47  Aligned_cols=50  Identities=18%  Similarity=0.440  Sum_probs=35.8

Q ss_pred             CCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          39 KPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        39 ~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      ..+.|++  |...+........|....|..    .|.+|.++|++.-.|..|+.--
T Consensus        78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~----sCs~C~r~~Pt~hLLd~HI~E~  129 (253)
T KOG4173|consen   78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN----SCSFCKRAFPTGHLLDAHILEW  129 (253)
T ss_pred             ccccccccchHHHHhhhhhHHHhhhhcccc----hhHHHHHhCCchhhhhHHHHHH
Confidence            3466765  666777766666654344443    7999999999999999997653

>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO

Probab=81.94  E-value=1.3  Score=19.08  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=16.7

Q ss_pred             eeeCCCCCcccC--chhHHHHHhhcC
Q psy7454          13 YVCFACKFYTYN--TGNIKRHLGMHL   36 (103)
Q Consensus        13 ~~C~~C~~~f~~--~~~l~~h~~~h~   36 (103)
                      -+|+.||..|..  ...-..|.+.|.
T Consensus        14 ~~C~~CgM~Y~~~~~eD~~~H~~yH~   39 (41)
T PF13878_consen   14 TTCPTCGMLYSPGSPEDEKLHKKYHD   39 (41)
T ss_pred             cCCCCCCCEECCCCHHHHHHHHHHHh
Confidence            579999988765  345566766653

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=81.83  E-value=0.94  Score=18.22  Aligned_cols=9  Identities=22%  Similarity=0.748  Sum_probs=4.6

Q ss_pred             CCeecCCCC
Q psy7454          39 KPFTCNMCE   47 (103)
Q Consensus        39 ~~~~c~~C~   47 (103)
                      ..++|+.|+
T Consensus        18 ~~~vCp~C~   26 (30)
T PF08274_consen   18 ELLVCPECG   26 (30)
T ss_dssp             SSEEETTTT
T ss_pred             CEEeCCccc
Confidence            345555554

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=81.80  E-value=0.83  Score=17.38  Aligned_cols=9  Identities=33%  Similarity=1.017  Sum_probs=7.3

Q ss_pred             ceeeCCCCC
Q psy7454          12 KYVCFACKF   20 (103)
Q Consensus        12 ~~~C~~C~~   20 (103)
                      .|.|+.||.
T Consensus        16 ~f~CPnCG~   24 (24)
T PF07754_consen   16 PFPCPNCGF   24 (24)
T ss_pred             eEeCCCCCC
Confidence            689999984

It is likely to bind zinc via its four well-conserved cysteine residues.

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=80.49  E-value=1.5  Score=20.15  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=15.9

Q ss_pred             CceeeCC--CCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454          11 YKYVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus        11 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .+..|+.  |...+ .+..|..|....-..++..|..
T Consensus         8 ~~v~C~~~cc~~~i-~r~~l~~H~~~~C~~~~v~C~~   43 (60)
T PF02176_consen    8 RPVPCPNGCCNEMI-PRKELDDHLENECPKRPVPCPY   43 (60)
T ss_dssp             SEEE-TT--S-BEE-ECCCHHHHHHTTSTTSEEE-SS
T ss_pred             CEeeCCCCCcccce-eHHHHHHHHHccCCCCcEECCC
Confidence            3455655  33323 3445666665444455556666

>KOG1280|consensus

Probab=80.41  E-value=2.3  Score=27.34  Aligned_cols=37  Identities=16%  Similarity=0.489  Sum_probs=23.1

Q ss_pred             CceeeCCCCCcccCchhHHHHHh-hcCCC-CCeecCCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLG-MHLGE-KPFTCNMCE   47 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~-~h~~~-~~~~c~~C~   47 (103)
                      ..|.|+.|+..-.....|..|.. .|... -..+|++|+
T Consensus        78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~  116 (381)
T KOG1280|consen   78 QSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA  116 (381)
T ss_pred             ccccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence            36888888877777777777754 34322 223566664

>KOG4167|consensus

Probab=80.30  E-value=0.33  Score=34.03  Aligned_cols=27  Identities=15%  Similarity=0.284  Sum_probs=23.2

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      ...|.|..|++.|....++.+||++|.
T Consensus       790 ~giFpCreC~kvF~KiKSrNAHMK~Hr  816 (907)
T KOG4167|consen  790 TGIFPCRECGKVFFKIKSRNAHMKTHR  816 (907)
T ss_pred             CceeehHHHHHHHHHHhhhhHHHHHHH
Confidence            346999999999988888999999885

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=80.13  E-value=1.6  Score=19.73  Aligned_cols=13  Identities=15%  Similarity=0.181  Sum_probs=6.8

Q ss_pred             ceeeCCCCCcccC
Q psy7454          12 KYVCFACKFYTYN   24 (103)
Q Consensus        12 ~~~C~~C~~~f~~   24 (103)
                      .+.|..||..|..
T Consensus         4 ~l~C~dCg~~Fvf   16 (49)
T PF13451_consen    4 TLTCKDCGAEFVF   16 (49)
T ss_pred             eEEcccCCCeEEE
Confidence            4555555555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
1a1f_A	90	Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc		8e-08
1a1h_A	90	Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		9e-08
2dmd_A	96	Solution Structure Of The N-Terminal C2h2 Type Zinc		2e-07
1a1i_A	90	Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac		3e-07
1jk1_A	90	Zif268 D20a Mutant Bound To Wt Dna Site Length = 90		6e-07
1aay_A	90	Zif268 Zinc Finger-Dna Complex Length = 90		8e-07
1zaa_C	87	Zinc Finger-Dna Recognition: Crystal Structure Of A		9e-07
1p47_A	87	Crystal Structure Of Tandem Zif268 Molecules Comple		9e-07
1g2f_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-06
1ubd_C	124	Co-Crystal Structure Of Human Yy1 Zinc Finger Domai		1e-05
2csh_A	110	Solution Structure Of Tandem Repeat Of The Zf-C2h2		3e-05
2jp9_A	119	Structure Of The Wilms Tumor Suppressor Protein Zin		3e-05
1g2d_C	90	Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX		3e-05
2i13_A	190	Aart, A Six Finger Zinc Finger Designed To Recogniz		3e-05
1mey_C	87	Crystal Structure Of A Designed Zinc Finger Protein		5e-05
3uk3_C	57	Crystal Structure Of Znf217 Bound To Dna Length = 5		6e-05
2wbs_A	89	Crystal Structure Of The Zinc Finger Domain Of Klf4		7e-05
2wbu_A	90	Crystal Structure Of The Zinc Finger Domain Of Klf4		8e-05
2ee8_A	106	Solution Structure Of Three Zf-C2h2 Domains From Mo		1e-04
2ebt_A	100	Solution Structure Of Three Tandem Repeats Of Zf-C2		1e-04
2lce_A	74	Chemical Shift Assignment Of Hr4436b From Homo Sapi		2e-04
2lt7_A	133	Solution Nmr Structure Of Kaiso Zinc Finger Dna Bin		3e-04
1x6h_A	86	Solution Structures Of The C2h2 Type Zinc Finger Do		3e-04

>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site) Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C     ++ N+ RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 11 SCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83

>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C      +G++ RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 11 SCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83

>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type Zinc-Binding Domain Of The Zinc Finger Protein 64, Isoforms 1 And 2 Length = 96

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 28 IKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKV 87
          +K H+  H G KP+ C  C++   D+ +L  H + IH+ ++P+ C+ C Y +R +  L V
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 88 HTKRY 92
          H + +
Sbjct: 83 HLRSH 87

>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site) Length = 90

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C      + ++ RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 11 SCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83

>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C      +  + RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 11 SCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83

>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex Length = 90

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C      +  + RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83

>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A Zif268- Dna Complex At 2.1 Angstroms Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C      +  + RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 11 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 67
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 68 CGRKFARSDERKRHTK 83

>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To Dna Length = 87

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRY 74
          +C      +  + RH+ +H G+KPF C +C   F   D+ T    HI  HTG+KP+ C  
Sbjct: 10 SCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTT---HIRTHTGEKPFACDI 66
Query: 75 CDYKARETQALKVHTK 90
          C  K   +   K HTK
Sbjct: 67 CGRKFARSDERKRHTK 82

>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (Tatazf;clone #6) Length = 90

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
          N+  H+ +H G+KPF C +C        +L A HI  HTG+KP+ C  C  K        
Sbjct: 21 NLDTHIRIHTGQKPFQCRICMRNFSQQASLNA-HIRTHTGEKPFACDICGRK-----FAT 74
Query: 87 VHTKRYHPKMY 97
          +HT+  H K++
Sbjct: 75 LHTRTRHTKIH 85

>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound To The Adeno-Associated Virus P5 Initiator Element Length = 124

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPY 70
           +VC  C      +  +KRH  +H GEKPF C    C  +   +  L+  H+ IHTG +PY
Sbjct: 35  HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRT-HVRIHTGDRPY 93
Query: 71  PCRY--CDYKARETQALKVH 88
            C +  C+ K  ++  LK H
Sbjct: 94  VCPFDGCNKKFAQSTNLKSH 113

>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains Of Human Zinc Finger Protein 297b Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
          Y C   K +T+ +    RH+ MHLG +P+ C +C  K +    L   H+ IHTG KPY C
Sbjct: 11 YPCQCGKSFTHKS-QRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG-HMKIHTGIKPYEC 68
Query: 73 RYC 75
            C
Sbjct: 69 NIC 71

>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc Finger Domain Bound To Dna Length = 119

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 23 YNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR 80
          +   +++ H   H GEKP+ C+   CE +   +  LK H    HTG KP+ C+ C  K  
Sbjct: 19 FKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFS 77
Query: 81 ETQALKVHTK 90
           +  LK HT+
Sbjct: 78 RSDHLKTHTR 87

>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE #2) Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
          N+  H+ +H G+KPF C +C  +     T    HI  HTG+KP+ C  C  K        
Sbjct: 21 NLDTHIRIHTGQKPFQCRIC-MRNFSQHTGLNQHIRTHTGEKPFACDICGRK-----FAT 74
Query: 87 VHTKRYHPKMY 97
          +HT+  H K++
Sbjct: 75 LHTRDRHTKIH 85

>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann Triplets Length = 190

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 13  YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           Y C  C     +  ++ RH   H GEKP+ C  C         L+AH    HTG+KPY C
Sbjct: 50  YKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYAC 108
Query: 73  RYCDYKARETQALKVHTK 90
             C     +   L+ H +
Sbjct: 109 PECGKSFSQLAHLRAHQR 126

>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound To Dna Length = 87

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
          Y C  C      + N+++H   H GEKP+ C  C      +  L+ H    HTG+KPY C
Sbjct: 5  YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQ-RTHTGEKPYKC 63
Query: 73 RYCDYKARETQALKVHTKRYHPK 95
            C      +  L  H + +  K
Sbjct: 64 PECGKSFSRSDHLSRHQRTHQNK 86

>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
          G     C+ C    R N  L  H +  HTG+KPY C +C+Y A +  +L+ H +R+H
Sbjct: 1  GSSSRECSYCGKFFRSNYYLNIH-LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56

>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 89

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 25 TGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
          + ++K HL  H GEKP+ C+   C +K   +  L   H   HTG +P+ C+ CD     +
Sbjct: 20 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDEL-TRHYRKHTGHRPFQCQKCDRAFSRS 78
Query: 83 QALKVHTKRY 92
            L +H KR+
Sbjct: 79 DHLALHMKRH 88

>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound To Its Target Dna Length = 90

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 25 TGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
          + ++K HL  H GEKP+ C+   C +K   +  L   H   HTG +P+ C+ CD     +
Sbjct: 21 SSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDEL-TRHYRKHTGHRPFQCQKCDRAFSRS 79
Query: 83 QALKVHTKRY 92
            L +H KR+
Sbjct: 80 DHLALHMKRH 89

>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse Protein Odd-Skipped-Related 2 Splicing Isoform 2 Length = 106

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 6  PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT 65
          P+  + +++C  C  +   + N+  H   H  E+P+TC++C    R    L+ H   IH+
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHS 69
Query: 66 GQKPYPCRYCDYKARETQALKVH 88
           +KP+ C+ C     +++ L VH
Sbjct: 70 KEKPFKCQECGKGFCQSRTLAVH 92

>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2 Domains From Human Kruppel-Like Factor 5 Length = 100

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 19 KFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
          K YT  + ++K HL  H GEKP+ C    C+++   +  L   H   HTG KP+ C  C+
Sbjct: 25 KVYT-KSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDEL-TRHYRKHTGAKPFQCGVCN 82
Query: 77 YKARETQALKVHTKRY 92
               +  L +H KR+
Sbjct: 83 RSFSRSDHLALHMKRH 98

>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens, Northeast Structural Genomics Consortium Length = 74

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
          Y C  C+      GN+  H  +H GEKP+ CN+C  +      LK  H  IH+G+KP
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKT-HTRIHSGEKP 73

>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding Domain In Complex With Kaiso Binding Site Dna Length = 133

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 10  RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQ 67
           R  Y+C  CK       +++RH  +H  EK + C  CE  F   + RT   H I+ HTG+
Sbjct: 20  RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT--KHEIH-HTGE 76
Query: 68  KPYPCRYCDYKARETQALKVHTKRYHPK 95
           + Y C  C       Q +  H K  H +
Sbjct: 77  RRYQCLACGKSFINYQFMSSHIKSVHSQ 104

>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of Human Transcriptional Repressor Ctcf Length = 86

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
           HTG+KPY C +CD   R+ Q L +H KRYH
Sbjct: 9  THTGEKPYACSHCDKTFRQKQLLDMHFKRYH 39

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	9e-12
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	2e-06
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	9e-11
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	1e-06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-10
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	2e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	3e-09
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-07
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	1e-06
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	7e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	4e-09
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	5e-05
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	6e-05
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	2e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-08
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	6e-06
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	9e-08
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-07
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	1e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	1e-07
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	8e-06
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	3e-04
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-07
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	2e-04
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	2e-07
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	7e-06
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	2e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	4e-07
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	2e-06
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	2e-07
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	2e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	3e-07
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	9e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	3e-07
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	1e-06
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	7e-06
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	3e-07
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	4e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	5e-07
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	3e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	5e-07
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-05
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	1e-04
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	7e-07
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	9e-07
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	1e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	2e-06
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	4e-05
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	6e-04
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	2e-06
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-06
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	2e-06
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	2e-06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-06
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-06
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	3e-06
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	2e-05
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	3e-06
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	4e-06
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-06
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	4e-06
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	4e-06
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	4e-06
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-06
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	5e-06
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	5e-06
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	5e-06
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	5e-06
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	6e-06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	6e-06
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	6e-06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-06
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-06
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	7e-06
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	7e-06
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	7e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	7e-06
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	4e-05
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	1e-04
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	7e-06
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-06
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	8e-06
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	8e-06
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	8e-06
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	8e-06
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	9e-06
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	9e-06
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	9e-06
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	9e-06
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	9e-06
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	1e-05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	1e-05
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	1e-05
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	1e-05
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	1e-05
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	1e-05
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-05
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	1e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	2e-05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	8e-05
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	2e-05
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	2e-05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	2e-05
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	2e-05
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	2e-05
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	2e-05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	2e-05
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	2e-05
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	3e-05
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	3e-05
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	3e-05
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	3e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	4e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-05
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	6e-04
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	4e-05
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	4e-05
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	5e-05
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	6e-05
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	7e-05
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	1e-04
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	1e-04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	1e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	1e-04
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	2e-04
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	1e-04
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	3e-04
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	3e-04
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	6e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 54.7 bits (132), Expect = 9e-12
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHT---GQKPYPCRYCDYKARETQALKVHTKR 91
            G     C +C F CR   +L  H    H        +PC +C  +  +  ++  H  +
Sbjct: 2  SSGSSGLQCEICGFTCRQKASLNWHQ-RKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60

Query: 92 YHPKM 96
           HP +
Sbjct: 61 SHPAL 65

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 41.2 bits (97), Expect = 2e-06
 Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 3/66 (4%)

Query: 13 YVCFACKFYTYNTGNIKRHLGMH---LGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP 69
            C  C F      ++  H   H   +    F C  C  +     ++ AH    H     
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67

Query: 70 YPCRYC 75
           P    
Sbjct: 68 APQESS 73

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 52.1 bits (126), Expect = 9e-11
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG--QKPYPCRYCDYKARETQ 83
          G+       H GEKP+ C +C  +   + T+K  HI          + C +CD       
Sbjct: 1  GSSGSSGRTHSGEKPYECYICHARFTQSGTMKM-HILQKHTENVAKFHCPHCDTVIARKS 59

Query: 84 ALKVHTKRYH 93
           L VH ++ H
Sbjct: 60 DLGVHLRKQH 69

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 41.4 bits (98), Expect = 1e-06
 Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 26 GNIKRHLGMHLGE--KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
          G +K H+     E    F C  C+        L  H    H+   P 
Sbjct: 29 GTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPS 75

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 51.3 bits (124), Expect = 2e-10
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH 88
               P  C+ C + C     L+ H   IH   +P+ C YC +  ++   L  H
Sbjct: 4  GSSGHPEKCSECSYSCSSKAALRIHE-RIHCTDRPFKCNYCSFDTKQPSNLSKH 56

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 70

 Score = 40.9 bits (97), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
            C  C +   +   ++ H  +H  ++PF CN C F  +    L  H      G    P 
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM-KKFHGDMSGPS 68

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 49.4 bits (119), Expect = 3e-09
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 30  RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT 89
               M+  E+ FTC++C+   R    L+ H +  HTG+ PY C  C  +  + + L+ H 
Sbjct: 56  ARNCMNRSEQVFTCSVCQETFRRRMELRLHMV-SHTGEMPYKCSSCSQQFMQKKDLQSHM 114

Query: 90  KRYH 93
            + H
Sbjct: 115 IKLH 118

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHH--INIHTGQKPYPCRYCDYKARETQ 83
            +K H   H GEKPF C  C         L  H     ++  ++ + C  C    R   
Sbjct: 21 YYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRM 80

Query: 84 ALKVH 88
           L++H
Sbjct: 81 ELRLH 85

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH 88
            G     C  C  K      LK H+   HTG+KP+ C  C       + L  H
Sbjct: 2  SSGSSGVECPTCHKKFLSKYYLKVHN-RKHTGEKPFECPKCGKCYFRKENLLEH 54

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 124

 Score = 37.9 bits (89), Expect = 7e-05
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 26  GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK 68
             ++ H+  H GE P+ C+ C  +    + L++H I +H+G  
Sbjct: 80  MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 48.2 bits (116), Expect = 4e-09
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL 85
          G++ RH+ +H G+KPF C +C      +  L  H    HTG+KP+ C  C  K   +   
Sbjct: 20 GSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDER 78

Query: 86 KVHTKRYH 93
          K H  + H
Sbjct: 79 KRH-TKIH 85

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.8 bits (89), Expect = 5e-05
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 38 EKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
          E+P+ C +      F    + T    HI IHTGQKP+ CR C      +  L  H  R H
Sbjct: 2  ERPYACPVESCDRRFSQSGSLT---RHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTH 57

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.4 bits (88), Expect = 6e-05
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 26 GNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQK 68
           ++  H+  H GEKPF C++C  +F   D R     H  IH  QK
Sbjct: 48 DHLTTHIRTHTGEKPFACDICGRKFARSDERK---RHTKIHLRQK 89

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 46.6 bits (112), Expect = 2e-08
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
           +K H+  H G KP+ C  C++   D+ +L  H   IH+ ++P+ C+ C Y +R +  L 
Sbjct: 23 KLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLT 81

Query: 87 VHTKRYH 93
          VH  R H
Sbjct: 82 VH-LRSH 87

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 45.5 bits (109), Expect = 6e-08
 Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 33 GMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK 90
          G      P  C +C   F  +D   LK H    HTG KPY C+ CDY A ++ +L  H  
Sbjct: 1  GSSGSSGPHKCEVCGKCFSRKDK--LKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKH-L 56

Query: 91 RYH 93
          R H
Sbjct: 57 RIH 59

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 40.1 bits (95), Expect = 6e-06
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
          ++ +HL +H  E+PF C +C +  R++  L  H    HTG      
Sbjct: 51 SLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLR-SHTGDSGPSS 95

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 42

 Score = 43.6 bits (104), Expect = 9e-08
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
            G   GEKP+ C +C  + R  +TLK+ H+ IHTG  P 
Sbjct: 2  SSGSSGGEKPYPCEICGTRFRHLQTLKS-HLRIHTGSGPS 40

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 26  GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
             +KRH   H G KPF C  C+ K   +  LK H    HTG+KP+ CR+  
Sbjct: 52  DQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTR-THTGEKPFSCRWPS 101

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A* Length = 119

 Score = 45.2 bits (108), Expect = 1e-07
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARE 81
           +++ H   H GEKP+ C+  +    F   D   LK H    HTG KP+ C+ C  K   
Sbjct: 22 SHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ--LKRHQ-RRHTGVKPFQCKTCQRKFSR 78

Query: 82 TQALKVHTKRYH 93
          +  LK H  R H
Sbjct: 79 SDHLKTH-TRTH 89

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 44.7 bits (107), Expect = 1e-07
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
          RH+ MHLG +P+ C +C  K +    L  H   IHTG KPY C  C
Sbjct: 27 RHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNIC 71

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 40.1 bits (95), Expect = 8e-06
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
          Y C  C K +     ++  H+ +H G KP+ CN+C  +     +    H ++ +  K Y 
Sbjct: 38 YGCGVCGKKFKMKH-HLVGHMKIHTGIKPYECNICAKRFMWRDSF---HRHVTSCTKSYE 93

Query: 72 CRYC 75
              
Sbjct: 94 AAKA 97

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 110

 Score = 35.9 bits (84), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 35 HLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
            G+K + C  C   F  +  R     H+++H G +PY C  C
Sbjct: 5  SSGDKLYPCQ-CGKSFTHKSQRD---RHMSMHLGLRPYGCGVC 43

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 44.0 bits (105), Expect = 2e-07
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
          G+  R        + + C+ C      +  L  H    HTG+KPY C  C
Sbjct: 4  GSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDEC 52

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
          +H   H GEKP+ C+ C         L  HH  +HTG  P 
Sbjct: 36 KHRRTHTGEKPYKCDECGKAFIQRSHLIGHHR-VHTGSGPS 75

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 44.0 bits (105), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK 86
          +   H  M   +KP+ C+ C+   R    L +H   +HTG+KPY C  C  +      LK
Sbjct: 4  HHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLK 62

Query: 87 VHTKRYH 93
           H  R H
Sbjct: 63 TH-TRIH 68

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 74

 Score = 39.7 bits (94), Expect = 7e-06
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
          GN+  H  +H GEKP+ CN+C  +      LK H   IH+G+KPY
Sbjct: 31 GNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR-IHSGEKPY 74

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 43.3 bits (103), Expect = 2e-07
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
                  KP+ C  C         L  H   +HT ++P+ C+  
Sbjct: 3  SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 2e-07
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 13  YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
           Y C  C K ++    N++ H   H GEKP+ C  C         L+AH    HTG+KPY 
Sbjct: 78  YKCPECGKSFSQR-ANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQR-THTGEKPYK 135

Query: 72  CRYC 75
           C  C
Sbjct: 136 CPEC 139

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 45.5 bits (109), Expect = 2e-07
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
          Y C  C K ++ +  ++  H   H GEKP+ C  C     D + L  H    HTG+KPY 
Sbjct: 22 YACPECGKSFSRS-DHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQR-THTGEKPYK 79

Query: 72 CRYC 75
          C  C
Sbjct: 80 CPEC 83

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.7 bits (107), Expect = 4e-07
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 13  YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
           Y C  C K ++    +++ H   H GEKP+ C  C         L  H    HTG+KPY 
Sbjct: 106 YACPECGKSFSQL-AHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQR-THTGEKPYK 163

Query: 72  CRYC 75
           C  C
Sbjct: 164 CPEC 167

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 44.7 bits (107), Expect = 4e-07
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 13  YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP 71
           Y C  C K ++    ++ RH   H GEKP+ C  C         L+AH    HTG+KPY 
Sbjct: 50  YKCPECGKSFSDK-KDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ-RTHTGEKPYA 107

Query: 72  CRYC 75
           C  C
Sbjct: 108 CPEC 111

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C* Length = 190

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPCRYC 75
           +      +  GEKP+ C  C   F   D+  L  H    HTG+KPY C  C
Sbjct: 7  SSSVAQAALEPGEKPYACPECGKSFSRSDH--LAEHQR-THTGEKPYKCPEC 55

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A Length = 89

 Score = 44.1 bits (105), Expect = 2e-07
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 11 YKYVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHT 65
          +      C K YT  + ++K HL  H GEKP+ C+       F   D  T    H   HT
Sbjct: 6  HTCDYAGCGKTYT-KSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELT---RHYRKHT 61

Query: 66 GQKPYPCRYCDYKARETQALKVHTKR 91
          G +P+ C+ CD     +  L +H KR
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKR 87

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens} Length = 100

 Score = 44.2 bits (105), Expect = 2e-07
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 25 TGNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR 80
          + ++K HL  H GEKP+ C        F   D  T    H   HTG KP+ C  C+    
Sbjct: 30 SSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT---RHYRKHTGAKPFQCGVCNRSFS 86

Query: 81 ETQALKVHTKR 91
           +  L +H KR
Sbjct: 87 RSDHLALHMKR 97

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 43.6 bits (104), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 26 GNIKRHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTG--QKPYPCRYCDYKARE 81
           ++ RH   H GEKP++C +C   FK +D  +   +H+  H G   KPY C+ C      
Sbjct: 21 YHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMS---YHVRSHDGSVGKPYICQSCGKGFSR 77

Query: 82 TQALKVHTKRYH 93
             L  H K+ H
Sbjct: 78 PDHLNGHIKQVH 89

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 42.5 bits (101), Expect = 9e-07
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
            G     C +C    RD   L  H +  H+G+KPY C  C
Sbjct: 2  SSGSSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVC 41

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 44.0 bits (105), Expect = 3e-07
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
          N+  H   H  E+P+TC++C    R    L+ H   IH+ +KP+ C+ C
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQEC 79

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 42.4 bits (101), Expect = 1e-06
 Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
                  +K F C  C      +  L  H    HT ++PY C  C
Sbjct: 7  GGRLPSKTKKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDIC 51

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1 Length = 106

 Score = 40.1 bits (95), Expect = 7e-06
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 27  NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           +++ H  +H  EKPF C  C      +RTL  H   +H        
Sbjct: 60  HLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKT-LHMQTSSPTA 104

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 42.9 bits (102), Expect = 3e-07
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 35 HLGEKPFTCNMCE--FKCRDNRTLKAHH-INIHTGQKPYPCRYCDYKARETQALKVHTKR 91
            GE  + C +C   +    N     H+  +     K YPC +C  +      +  H K 
Sbjct: 5  KEGEHTYRCKVCSRVYTHISN--FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62

Query: 92 YHP 94
           H 
Sbjct: 63 IHK 65

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus} Length = 82

 Score = 42.8 bits (102), Expect = 4e-07
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 5/48 (10%)

Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
           HL +H   +P+ C  C   F  + +  +K H   IHTG+KP+ C+ C
Sbjct: 19 THLLIHSDTRPYPCQYCGKRFHQKSD--MKKHTF-IHTGEKPHKCQVC 63

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 42.5 bits (101), Expect = 5e-07
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
             G+H GEKP+ C  C      +  L  H   +HTG+KPY C  C
Sbjct: 4  GSSGIHSGEKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLEC 48

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 72

 Score = 38.2 bits (90), Expect = 3e-05
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
          Y C  C K ++ ++  + +H  +H GEKP+ C  C      N  L  H   IHT     
Sbjct: 15 YGCVECGKAFSRSS-ILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ-RIHTSGPSS 71

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 43.7 bits (104), Expect = 5e-07
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRY 74
            +KRH  +H GEKPF C        F    N      H+ IHTG +PY C +
Sbjct: 48 SKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR---THVRIHTGDRPYVCPF 97

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 39.8 bits (94), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
            +++HL  H G +   C  C     ++  LK H + +HTG+KP+ C
Sbjct: 21 SAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQC 65

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A* Length = 124

 Score = 37.5 bits (88), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 26  GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPY 70
            N++ H+ +H G++P+ C        F    N  LK+H +  H   K  
Sbjct: 78  FNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN--LKSHIL-THAKAKNN 123

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 47

 Score = 41.4 bits (98), Expect = 7e-07
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                G+KP+ C  C      N +L  H    HTG+KP   
Sbjct: 3  SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 41.4 bits (98), Expect = 9e-07
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C      N  L  H   IHTG KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLANHQ-RIHTGVKPSGP 43

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 102

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 3/71 (4%)

Query: 27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG---QKPYPCRYCDYKARETQ 83
          +   +      E  + C  C F+  D      H  + H        Y C  C++  +   
Sbjct: 5  HHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64

Query: 84 ALKVHTKRYHP 94
          AL  H  +YHP
Sbjct: 65 ALSEHNLKYHP 75

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 26  GNIKRHLGMHLGEKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPCRY 74
            N+K HL  H GEKP+ C      C     +      H    H+ +KPY C+ 
Sbjct: 83  ENLKTHLRSHTGEKPYMCE--HEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 26 GNIKRHLG---MHLGEKPFTCNMCEFKCRDNRTLKAH-----HINIHTGQKPYPCRY--C 75
            +  H+    +H   K F C+      R+ R  KA      H+  HTG+KP+ C +  C
Sbjct: 17 EQLVHHINSEHIHGERKEFVCHWGGCS-RELRPFKAQYMLVVHMRRHTGEKPHKCTFEGC 75

Query: 76 DYKARETQALKVHTKRYH 93
                 + LK H  R H
Sbjct: 76 RKSYSRLENLKTH-LRSH 92

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 Length = 155

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAH--HINIHTGQKPYPCRYCD 76
          E     + C  +      L  H    +IH  +K + C +  
Sbjct: 1  ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG 41

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 45

 Score = 40.2 bits (95), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                G+KPF C  C    R    L  H   IHTG+K  P 
Sbjct: 3  SGSSGTGQKPFECTHCGKSFRAKGNLVTHQ-RIHTGEKSGPS 43

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 2e-06
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C    R N  L  H   IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQ-RIHTGEKPSGP 43

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A Length = 46

 Score = 40.2 bits (95), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C  C    R    L  H   +H+G+KP   
Sbjct: 2  SSGSSGTGEKPYNCKECGKSFRWASCLLKHQ-RVHSGEKPSGP 43

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 2e-06
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP  C  C      N  L  H   IHTG+ P   
Sbjct: 2  SSGSSGTGEKPHECRECGKSFSFNSQLIVHQ-RIHTGENPSGP 43

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 40.2 bits (95), Expect = 3e-06
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 G KP+ CN C        +L  H + IHTG+KP   
Sbjct: 2  SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGP 43

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEK + CN C      N  L  H   IHTG+KP   
Sbjct: 2  SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQ-KIHTGEKPSGP 43

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C  C    R N  L +H   IHTG+KP   
Sbjct: 2  SSGSSGSGEKPFKCKECGKAFRQNIHLASHL-RIHTGEKPSGP 43

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C  C  +   N  L +H   +HTG+KP   
Sbjct: 2  SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQ-RVHTGEKPSGP 43

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C+ C  K   +++    H+  H+G+KP   
Sbjct: 2  SSGSSGAGEKPYGCSECG-KAFSSKSYLIIHMRTHSGEKPSGP 43

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C      N  L  H   IHTG+KP   
Sbjct: 2  SSGSSGSGEKPYKCNECGKVFTQNSHLTNHW-RIHTGEKPSGP 43

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C+ C+  F  + N  +   H   HTG+KP   
Sbjct: 2  SSGSSGTGEKPFECSECQKAFNTKSNLIV---HQRTHTGEKPSGP 43

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C  C  K  + R     H  +HTG+KP   
Sbjct: 2  SSGSSGTGEKPFKCGECG-KSYNQRVHLTQHQRVHTGEKPSGP 43

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 40.6 bits (96), Expect = 3e-06
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 27 NIKRHL-GMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYC 75
           +  H    H+ +K F+C        F  + +      H+ +H+  + Y C + 
Sbjct: 24 YLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLK---EHMKLHSDTRDYICEFS 74

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 79

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 10/42 (23%), Positives = 12/42 (28%), Gaps = 6/42 (14%)

Query: 35 HLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPC 72
            G     C+       F  R    L  H    H  QK + C
Sbjct: 2  SSGSSGMPCDFPGCGRIFSNRQY--LNHHKKYQHIHQKSFSC 41

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 3e-06
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C      N  L  H   IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECGKVFTQNSHLVRHR-GIHTGEKPSGP 43

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C++C    R   +L  H   IHTG+KP   
Sbjct: 3  SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQ-RIHTGEKPSGP 43

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.8 bits (94), Expect = 4e-06
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C  K     +  A H  IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECG-KAFSQTSKLARHQRIHTGEKPSGP 43

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A Length = 46

 Score = 39.8 bits (94), Expect = 4e-06
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C  C      +  L  H   IHTG+KP   
Sbjct: 2  SSGSSGTGEKPFECAECGKSFSISSQLATHQ-RIHTGEKPSGP 43

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GE+P+ C +C  K   +R+    H  IHTG+KP   
Sbjct: 2  SSGSSGTGERPYICTVCG-KAFTDRSNLIKHQKIHTGEKPSGP 43

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 4e-06
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C  C  K    +     H  IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYRCGECG-KAFAQKANLTQHQRIHTGEKPSGP 43

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 4e-06
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                G+K F CN C+     + +L  H   IHTG+KP   
Sbjct: 3  SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ-RIHTGEKPSGP 43

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A Length = 46

 Score = 39.4 bits (93), Expect = 4e-06
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C  C         L  HH  +HTG+KP   
Sbjct: 2  SSGSSGTGEKPFKCVECGKGFSRRSALNVHH-KLHTGEKPSGP 43

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.5 bits (93), Expect = 5e-06
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKPF C  C  +   N  L +H   +HTG+KP   
Sbjct: 2  SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQ-RVHTGEKPSGP 43

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-06
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C+ C    R N  L  H + IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGP 43

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-06
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C   F  R + T    H  IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYECNQCGKAFSVRSSLT---THQAIHTGKKPSGP 43

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.4 bits (93), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C  C      +  L+ H   IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQ-RIHTGEKPSGP 43

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 Length = 73

 Score = 40.0 bits (94), Expect = 5e-06
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 26 GNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQ 83
           N+  +  +    +P+ C +  C+ +   +  L   HI IHTGQKP+ CR C      + 
Sbjct: 7  NNLLNY--VVPKMRPYACPVESCDRRFSRSDELT-RHIRIHTGQKPFQCRICMRNFSRSD 63

Query: 84 ALKVHTKR 91
           L  H + 
Sbjct: 64 HLTTHIRT 71

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 6e-06
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKPF C  C     D+  L  H   IHTG+KP   
Sbjct: 3  SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR-RIHTGEKPSGP 43

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 6e-06
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C +C  K    +   A H   HTG+KP   
Sbjct: 2  SSGSSGTGEKPYECKVCS-KAFTQKAHLAQHQKTHTGEKPSGP 43

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 6e-06
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C  K    R+  A H   H+G+KP   
Sbjct: 2  SSGSSGTGEKPYKCNECG-KAFRARSSLAIHQATHSGEKPSGP 43

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A Length = 46

 Score = 39.0 bits (92), Expect = 6e-06
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR 73
                 GEKP+ C  C  K     T    H  +HTG+KP    
Sbjct: 2  SSGSSGTGEKPYECKECG-KAFSQTTHLIQHQRVHTGEKPSGPS 44

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GE+P  CN C  K          H  IHTG+KP   
Sbjct: 2  SSGSSGTGERPHKCNECG-KSFIQSAHLIQHQRIHTGEKPSGP 43

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR 73
                 GEKP+ C+ C      +  L  H   IHTG+KP    
Sbjct: 2  SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQ-RIHTGEKPSGPS 44

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEK + C  C  K          H  +H+G+KP   
Sbjct: 3  SGSSGTGEKLYNCKECG-KSFSRAPCLLKHERLHSGEKPSGP 43

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 44

 Score = 39.1 bits (92), Expect = 7e-06
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
            GEKPF C+ CE K   +++    H   H  +KP   
Sbjct: 5  SSGEKPFGCSCCE-KAFSSKSYLLVHQQTHAEEKPSGP 41

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                 EKP+ C  C   +  R N  +   H  +H G+K    
Sbjct: 3  SGSSGSVEKPYKCEDCGKGYNRRLNLDM---HQRVHMGEKTSGP 43

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 41.1 bits (97), Expect = 7e-06
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 26  GNIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPC 72
            N+K H   H GEKPF C        F    +R     H+++HT  K  P 
Sbjct: 106 ENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDR---KKHMHVHTSDKSGPS 153

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 7/64 (10%), Positives = 15/64 (23%), Gaps = 1/64 (1%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT 89
              +   +       C+        L   H+ +     P    +  Y     +  K   
Sbjct: 15 SCKWIDEAQLSRPKKSCDRTFSTMHELV-THVTMEHVGGPEQNNHVCYWEECPREGKSFK 73

Query: 90 KRYH 93
           +Y 
Sbjct: 74 AKYK 77

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 38.8 bits (91), Expect = 4e-05
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 27  NIKRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRY 74
            +  H+ +H GEKPF C        F   +N      H   HTG+KP+ C +
Sbjct: 77  KLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK---IHKRTHTGEKPFKCEF 125

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens} Length = 155

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKA--------HHINIHTGQKPYPCRYCD 76
            +  H+ M     P   N   +     R  K+        +HI +HTG+KP+PC +  
Sbjct: 39 HELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPG 97

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.1 bits (92), Expect = 7e-06
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C+ C      +  L  H I  HT +KP   
Sbjct: 3  SGSSGEGEKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 39.0 bits (92), Expect = 7e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C +C    R +  L  HH ++H+G++P   
Sbjct: 2  SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHH-SVHSGERPSGP 43

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 8e-06
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GE+PF CN C         L  H   +H+ +K    
Sbjct: 2  SSGSSGSGERPFKCNECGKGFGRRSHLAGHL-RLHSREKSSGP 43

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 8e-06
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ CN C    R +  L  H + IHTG+KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGP 43

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 8e-06
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C  C     DN +   H   +HTGQ+P   
Sbjct: 3  SGSSGTGEKPYKCMECGKAFGDNSSCTQHQ-RLHTGQRPSGP 43

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 8e-06
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C  C   F  R N      H  IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYRCAECGKAFTDRSNLF---THQKIHTGEKPSGP 43

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 9e-06
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP++CN+C   F    +      H+ +HT +     
Sbjct: 2  SSGSSGTGEKPYSCNVCGKAFVLSAHLN---QHLRVHTQETLSGP 43

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 9e-06
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                G  P+ C+ CE K    +     H  +HT +KP   
Sbjct: 3  SGSSGAGVNPYKCSQCE-KSFSGKLRLLVHQRMHTREKPSGP 43

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 38.6 bits (91), Expect = 9e-06
 Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ CN C+        L  H    HTG+     
Sbjct: 3  SGSSGTGEKPYECNECQKAFNTKSNLMVHQ-RTHTGESGPSS 43

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} Length = 46

 Score = 38.7 bits (91), Expect = 9e-06
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 31 HLGMHLGEKPFTCNMCEFKC-RDNRTLKAHHINIHTGQKPYPC 72
               +GEK + C  C+  C     +L+ H  N+H G+KP   
Sbjct: 3  SGSSGMGEKTWKCRECD-MCFSQASSLRLHQ-NVHVGEKPSGP 43

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.7 bits (91), Expect = 9e-06
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C  C         L  H   +HTG++P   
Sbjct: 3  SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQ-KVHTGERPSGP 43

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.6 bits (91), Expect = 1e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKPF C++C         L  H + +HT +KP   
Sbjct: 3  SGSSGTGEKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGP 43

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A Length = 85

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 7/69 (10%)

Query: 29 KRHLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA 84
          K H   H  + P+ C        F           H  +H G        C +  +    
Sbjct: 20 KVHQFSHTQQLPYECPHEGCDKRFSLPSRLK---RHEKVHAGYPCKKDDSCSFVGKTWTL 76

Query: 85 LKVHTKRYH 93
             H    H
Sbjct: 77 YLKHVAECH 85

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                 G KP+ C+ C   F  +    +   H   HTG KP   
Sbjct: 2  SSGSSGTGVKPYGCSQCAKTFSLKSQLIV---HQRSHTGVKPSGP 43

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 G++P+ C  C    +   +L  H    HTG+KP   
Sbjct: 2  SSGSSGTGQRPYECIECGKAFKTKSSLICHR-RSHTGEKPSGP 43

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C+ C         L  H    HTG++    
Sbjct: 2  SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQ-QSHTGERHSGP 43

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 38.2 bits (90), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 G KP+ CN C    R    L  H    HTG+     
Sbjct: 2  SSGSSGTGMKPYVCNECGKAFRSKSYLIIHT-RTHTGESGPSS 43

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C  C   F CR +  L  HH  +HTG+KP   
Sbjct: 3  SGSSGTGEKPYKCEECGKGFICRRD--LYTHH-MVHTGEKPSGP 43

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.2 bits (90), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C+ C  K     T    H  IHTG +P   
Sbjct: 2  SSGSSGSGEKPYKCSECG-KAFHRHTHLNEHRRIHTGYRPSGP 43

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C++C  K   +R   + H  IH+G+KP   
Sbjct: 2  SSGSSGTGEKPYECSVCG-KAFSHRQSLSVHQRIHSGKKPSGP 43

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
               +GEK + C++C  K     +    H  +HTG+KP   
Sbjct: 3  SGSSGMGEKCYKCDVCG-KEFSQSSHLQTHQRVHTGEKPSGP 43

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 38.3 bits (90), Expect = 1e-05
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ CN C      N  L  H   IHTG+KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 39.0 bits (92), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
           ++  H+  H GEKPF C++C  K   +   K H  +I     P      +
Sbjct: 17 DHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR-DIQH-ILPILEDKVE 65

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A Length = 88

 Score = 37.1 bits (87), Expect = 8e-05
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 39 KPFTCNMCE--FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
          KPF C +C   F   D+  L   HI  HTG+KP+ C  C  K   +   K H +   
Sbjct: 2  KPFQCRICMRNFSRSDH--LT-THIRTHTGEKPFACDICGRKFARSDERKRH-RDIQ 54

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 G K F C  C  K    ++  + H  IHTG+KP   
Sbjct: 2  SSGSSGTGGKHFECTECG-KAFTRKSTLSMHQKIHTGEKPSGP 43

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                G KP+ CN C  K     +  A H  +HTG+KP   
Sbjct: 3  SGSSGTGGKPYQCNECG-KAFSQTSKLARHQRVHTGEKPSGP 43

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                G+KP+ CN C      N  L  H   IHTG+KP   
Sbjct: 3  SGSSGTGKKPYKCNECGKVFTQNSHLARHR-GIHTGEKPSGP 43

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GE PF C+ C  K   ++T    H  IHTG++P   
Sbjct: 3  SGSSGTGENPFICSECG-KVFTHKTNLIIHQKIHTGERPSGP 43

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 5/44 (11%)

Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C  C   F  R N      H  IHT QKP   
Sbjct: 3  SGSSGTGEKPYICAECGKAFTIRSNLI---KHQKIHTKQKPSGP 43

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C++C      + +L  H   +H+G+KP   
Sbjct: 3  SGSSGTGEKPYECDVCRKAFSHHASLTQHQ-RVHSGEKPSGP 43

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 13/47 (27%), Gaps = 1/47 (2%)

Query: 29 KRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC 75
          KR+   +     F C+ C        T+  H  +   G         
Sbjct: 36 KRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA-DNCAGPDGVEGENS 81

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 86

 Score = 38.7 bits (91), Expect = 2e-05
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG----QKPYPCRYC 75
          G+       H GEKP+ C+ C+ K    + L   H   +         + C  C
Sbjct: 1  GSSGSSGRTHTGEKPYACSHCD-KTFRQKQLLDMHFKRYHDPNFVPAAFVCSKC 53

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ C++C  K    ++    H  IHTG+KP   
Sbjct: 2  SSGSSGTGEKPYECSICG-KSFTKKSQLHVHQQIHTGEKPSGP 43

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 37.5 bits (88), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
            G   GEKP+ C  C  +      L+AH   IHTG  P 
Sbjct: 2  SSGSSGGEKPYKCETCGARFVQVAHLRAHV-LIHTGSGPS 40

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                   K   C+ C         L  H   IHTG+KP   
Sbjct: 2  SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQ-RIHTGEKPSGP 43

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.9 bits (89), Expect = 2e-05
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C+ C         L+ H    HTG++    
Sbjct: 3  SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQ-KCHTGERHSGP 43

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 2e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ CN C      N  L  H   +HTG KP   
Sbjct: 3  SGSSGTGEKPYKCNECGKVFTQNSHLARHR-RVHTGGKPSGP 43

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 42

 Score = 37.5 bits (88), Expect = 2e-05
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
            G   GEKP+ C+ C  K    +     HI +HTG  P 
Sbjct: 2  SSGSSGGEKPYRCDQCG-KAFSQKGSLIVHIRVHTGSGPS 40

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ CN C         L AH    HTG+KP   
Sbjct: 3  SGSSGSGEKPYGCNECGKTFSQKSILSAHQ-RTHTGEKPSGP 43

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ CN C         L  H   IHTG+KP   
Sbjct: 3  SGSSGTGEKPYICNECGKSFIQKSHLNRHR-RIHTGEKPSGP 43

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C  C  K    R     H  +HTG+K    
Sbjct: 3  SGSSGSGEKPYKCVECG-KGYKRRLDLDFHQRVHTGEKLSGP 43

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GE P+ C+ C   F  +        H   H G+KP   
Sbjct: 2  SSGSSGTGENPYECHECGKAFSRKYQLI---SHQRTHAGEKPSGP 43

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 G+KP+ C  C         L  H   +HTG++    
Sbjct: 2  SSGSSGSGKKPYECKECRKTFIQIGHLNQHK-RVHTGERSSGP 43

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 37.5 bits (88), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKPF C  C      N    +H    H+G+KP   
Sbjct: 3  SGSSGSGEKPFKCEECGKGFYTNSQCYSHQ-RSHSGEKPSGP 43

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKP+ C+ C  K    ++    H  IHTG+ P   
Sbjct: 3  SGSSGTGEKPYECSDCG-KSFIKKSQLHVHQRIHTGENPSGP 43

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 31 HLGMHLGEKPFTCNMCE----FKCRDNRTLKAHHINIHTGQKPYPCRYCD 76
             + +  K + C+  +    +       L+AH    HTG+KP+PC+   
Sbjct: 3  EKALPVVYKRYICSFADCGAAYNKNWK--LQAHLC-KHTGEKPFPCKEEG 49

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 26 GNIKRHLGMHLGEKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPC--RYCDYKA 79
            ++ HL  H GEKPF C   E  C         L  H +  HTG+K + C    CD + 
Sbjct: 28 WKLQAHLCKHTGEKPFPCK--EEGCEKGFTSLHHLTRHSL-THTGEKNFTCDSDGCDLRF 84

Query: 80 RETQALKVHTKRYH 93
               +K H     
Sbjct: 85 TTKANMKKH-FNRF 97

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A Length = 190

 Score = 36.0 bits (84), Expect = 6e-04
 Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 7/71 (9%)

Query: 27  NIKRHLGMHLGEKPFTCNMCEFKC----RDNRTLKAHHINIHTGQKPYPCRYCDYKARET 82
            +K H   H  + P+ C      C         LK H   +H G        C +  +  
Sbjct: 121 QLKVHQFSHTQQLPYECP--HEGCDKRFSLPSRLKRHEK-VHAGYPCKKDDSCSFVGKTW 177

Query: 83  QALKVHTKRYH 93
                H    H
Sbjct: 178 TLYLKHVAECH 188

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GE+ + C+ C  K    ++  + H  IH G+KP   
Sbjct: 3  SGSSGTGERHYECSECG-KAFIQKSTLSMHQRIHRGEKPSGP 43

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 37.1 bits (87), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GE+ + C+ C        TL  H   IHTG+KP   
Sbjct: 2  SSGSSGTGERHYECSECGKAFARKSTLIMHQ-RIHTGEKPSGP 43

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 36.7 bits (86), Expect = 4e-05
 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GE+   C+ C            H   IHTG+KP   
Sbjct: 2  SSGSSGHGERGHRCSDCGKFFLQASNFIQHR-RIHTGEKPSGP 43

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 36.7 bits (86), Expect = 5e-05
 Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 5/45 (11%)

Query: 30 RHLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP+ CN C   F  +    +   H   H G      
Sbjct: 2  SSGSSGSGEKPYECNECGKAFIWKSLLIV---HERTHAGVSGPSS 43

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A Length = 42

 Score = 36.5 bits (85), Expect = 6e-05
 Identities = 11/40 (27%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
            G   GE P+ C  C  K    R   A H    +   P 
Sbjct: 2  SSGSSGGETPYLCGQCG-KSFTQRGSLAVHQRSCSQSGPS 40

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 36.3 bits (85), Expect = 7e-05
 Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 5/44 (11%)

Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                GE+P+ CN C   F    +      H+  H  +K    
Sbjct: 3  SGSSGSGERPYGCNECGKNFGRHSHLI---EHLKRHFREKSSGP 43

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 48

 Score = 36.1 bits (84), Expect = 1e-04
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 31 HLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKPF C    C ++   +  L   H   H+G KP   
Sbjct: 3  SGSSGTGEKPFACTWPGCGWRFSRSDELS-RHRRSHSGVKPSGP 45

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A Length = 42

 Score = 36.0 bits (84), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
            GE P+ C+ C  K  + +     H   H G+     
Sbjct: 5  SSGENPYECSECG-KAFNRKDQLISHQRTHAGESGPSS 41

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEK  TC+ C         L+ H   +H G+K    
Sbjct: 3  SGSSGSGEKSHTCDECGKNFCYISALRIHQ-RVHMGEKCSGP 43

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 35.9 bits (84), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 13 YVCFAC-KFYTYNTGNIKRHLGMHLGEKPFTCNMCE--FKCRDNRTLKAHHINIHTG 66
          +VC  C + +     ++KRH   H  EKP+ C +C   F  RD   L  H   IH+G
Sbjct: 3  FVCEVCTRAFARQE-HLKRHYRSHTNEKPYPCGLCNRAFTRRDL--LIRHAQKIHSG 56

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1 Length = 60

 Score = 35.5 bits (83), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
          + F C +C         LK H+   HT +KPYPC  C+        L  H ++ H
Sbjct: 1  RSFVCEVCTRAFARQEHLKRHY-RSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 35.6 bits (83), Expect = 1e-04
 Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 1/43 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                 GEKP  C  C  K    ++    H   H   K    
Sbjct: 2  SSGSSGTGEKPCKCTECG-KAFCWKSQLIMHQRTHVDDKHSGP 43

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 41

 Score = 34.9 bits (81), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY 70
            G++ + C  C    R   +L  H   IHTG  P 
Sbjct: 5  SSGQRVYECQECGKSFRQKGSLTLHE-RIHTGSGPS 39

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 46

 Score = 34.9 bits (81), Expect = 3e-04
 Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 5/44 (11%)

Query: 31 HLGMHLGEKPFTCNMC--EFKCRDNRTLKAHHINIHTGQKPYPC 72
                GEKPF C  C   F    +      H+  H    P   
Sbjct: 3  SGSSGTGEKPFQCKECGMNFSWSCSLF---KHLRSHERTDPSGP 43

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 Length = 44

 Score = 34.0 bits (79), Expect = 6e-04
 Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
                GE P+ C  C  K    +     H   H+GQ     
Sbjct: 3  SGSSGTGENPYECCECG-KVFSRKDQLVSHQKTHSGQSGPSS 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.97
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.93
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.93
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.93
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.92
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.92
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.91
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.91
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.91
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.91
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.91
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.91
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.91
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.9
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.9
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.89
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.88
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.88
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.87
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.87
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.87
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.86
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.86
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.85
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.85
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.84
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.83
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.83
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.83
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.81
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.8
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.79
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.79
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.79
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.77
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.77
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.77
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.76
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.76
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.76
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.75
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.75
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.74
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.74
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.73
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.73
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.72
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.72
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.71
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.71
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.7
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.7
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.69
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.69
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.68
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.68
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.67
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.67
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.67
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.65
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.64
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.64
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.64
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.64
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.63
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.63
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.62
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.62
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.61
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.61
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.61
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.61
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.61
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.61
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.61
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.61
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.61
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.61
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.61
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.61
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.6
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.6
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.6
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.6
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.6
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.6
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.6
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.6
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.6
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.6
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.6
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.6
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.6
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.59
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.59
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.59
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.59
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.59
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.59
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.59
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.59
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.59
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.59
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.59
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.59
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.59
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.59
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.58
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.58
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.58
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.57
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.57
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.57
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.56
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.56
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.56
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.56
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.55
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.54
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.54
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.53
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.53
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.53
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.52
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.52
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.52
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.52
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.51
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.51
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.51
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.51
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.51
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.51
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.51
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.51
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.51
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.51
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.51
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.51
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.5
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.5
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.5
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.5
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.5
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.5
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.5
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.5
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.5
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.5
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.49
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.49
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.49
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.49
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.49
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.49
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.49
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.49
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.49
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.49
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.49
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.49
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.49
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.49
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.49
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.49
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.49
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.48
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.48
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.48
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.48
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.48
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.48
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.48
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.48
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.48
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.48
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.48
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.47
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.47
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.47
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.47
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.47
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.47
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.47
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.47
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.46
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.46
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.46
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.46
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.46
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.46
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.46
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.45
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.44
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.44
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.43
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.42
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.42
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.4
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.4
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.39
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.39
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.39
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.38
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.38
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.38
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.37
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.37
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.37
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.36
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.36
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.36
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.35
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.34
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.34
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.34
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.33
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.33
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.33
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.33
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.32
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.32
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.32
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.31
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.29
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.29
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.29
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.28
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.28
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.26
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.25
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.25
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.23
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.23
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.22
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.21
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.21
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.19
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.17
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.17
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.16
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.13
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.13
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.13
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.12
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.11
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.08
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.07
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.07
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.06
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.05
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.02
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	99.01
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.99
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.99
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.99
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.98
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.95
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.93
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.91
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.9
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.89
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.88
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.87
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.84
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.84
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.84
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.84
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.83
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.82
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.79
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.79
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.78
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.78
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.78
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.78
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.77
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.76
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.75
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.73
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.19
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.72
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.71
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.17
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.7
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.69
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.68
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.68
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.67
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.67
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.67
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.66
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.65
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.64
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.63
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.59
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.01
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.97
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.95
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.48
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.83
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.38
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.88
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.66
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.61
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.52
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.82
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.77
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.71
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.7
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.38
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	95.82
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	95.61
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.22
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.12
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	94.94
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	94.77
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.42
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	93.4
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	92.07
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	91.07
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	90.24
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	89.49
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	89.26
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	88.14
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	87.26
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	87.13
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	87.12
2k9h_A	57	Glycoprotein; hantavirus, zinc finger, CCHC, metal	86.53
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	85.83
2djr_A	76	Zinc finger BED domain-containing protein 2; C2H2	85.83
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	85.32
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	84.86
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	83.73
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	83.0
2lcq_A	165	Putative toxin VAPC6; PIN domain, Zn ribbon domain	82.26
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	81.43
3sp4_A	204	Aprataxin-like protein; HIT domain, zinc finger, D	81.3

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.97  E-value=1.2e-31  Score=145.59  Aligned_cols=98  Identities=26%  Similarity=0.386  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARE   81 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~   81 (103)
                      |+.++|+|+++|.|++|++.|.....|..|+++|.++++|.|+.|++.|...+.|..| ++.|.+++||.|..||+.|..
T Consensus        12 h~~~~h~Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C~k~F~~   90 (133)
T 2lt7_A           12 HYELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGERRYQCLACGKSFIN   90 (133)
T ss_dssp             EEEEEETTEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHH-HHHHHTCCCEEESSSCCEESS
T ss_pred             hceeecCCCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhh-ccccCCCccccCCCCCCCcCC
Confidence            4567889999999999999999999999999999999999999999999999999998 899999999999999999999


Q ss_pred             cHHHHHHHHhhCCCCCccc
Q psy7454          82 TQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        82 ~~~l~~H~~~~~~~~~~~~  100 (103)
                      .+.|..|++++++++|+..
T Consensus        91 ~~~L~~H~~~hh~~~p~~~  109 (133)
T 2lt7_A           91 YQFMSSHIKSVHSQDPSGD  109 (133)
T ss_dssp             HHHHHHHHHHHTCCCTTSS
T ss_pred             HHHHHHHhHHhcCCCCCCC
Confidence            9999999999999887643

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.93  E-value=1.6e-25  Score=115.17  Aligned_cols=92  Identities=25%  Similarity=0.593  Sum_probs=87.0

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHH
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL   85 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l   85 (103)
                      .+.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..| +..|.++++|.|..|++.|.....|
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l   80 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH-LRIHSDERPFKCQICPYASRNSSQL   80 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHH-HHHSCCCCCEECSSSSCEESSHHHH
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHH-HHHhCCCCCccCCCCCCccCCHHHH
Confidence            356788999999999999999999999999999999999999999999999998 8899999999999999999999999


Q ss_pred             HHHHHhhCCCCCc
Q psy7454          86 KVHTKRYHPKMYD   98 (103)
Q Consensus        86 ~~H~~~~~~~~~~   98 (103)
                      ..|+++|+++.+.
T Consensus        81 ~~H~~~h~~~~~p   93 (96)
T 2dmd_A           81 TVHLRSHTGDSGP   93 (96)
T ss_dssp             HHHHTTCCSCCCC
T ss_pred             HHHHHHhcCCCCC
Confidence            9999999998764

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.93  E-value=1.7e-25  Score=116.93  Aligned_cols=92  Identities=24%  Similarity=0.474  Sum_probs=87.5

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHH
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK   86 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~   86 (103)
                      ..++++|.|+.|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.++++|.|..|++.|.....|.
T Consensus        12 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~L~   90 (106)
T 2ee8_A           12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH-RYIHSKEKPFKCQECGKGFCQSRTLA   90 (106)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHH-GGGSCCCCTTSCSSSCCCCSSHHHHH
T ss_pred             cCCCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHH-HHHhCCCCCeECCCcCCcccCHHHHH
Confidence            34567899999999999999999999999999999999999999999999998 89999999999999999999999999


Q ss_pred             HHHHhhCCCCCcc
Q psy7454          87 VHTKRYHPKMYDV   99 (103)
Q Consensus        87 ~H~~~~~~~~~~~   99 (103)
                      .|+++|++++||.
T Consensus        91 ~H~~~H~~~~~~~  103 (106)
T 2ee8_A           91 VHKTLHMQTSSPT  103 (106)
T ss_dssp             HHHHHTTSCCCCC
T ss_pred             HHHHHhCCCCCCc
Confidence            9999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.93  E-value=1.1e-26  Score=132.46  Aligned_cols=92  Identities=28%  Similarity=0.520  Sum_probs=55.5

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHH
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL   85 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l   85 (103)
                      +|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|.....|..| ++.|.++++|.|..|++.|.....|
T Consensus        99 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~~~~C~~C~~~f~~~~~L  177 (190)
T 2i13_A           99 THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTH-QRTHTGEKPYKCPECGKSFSRRDAL  177 (190)
T ss_dssp             HHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH-HHHHHCCCCEECTTTCCEESSHHHH
T ss_pred             hcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHHHHH-HHhcCCCCCeECCCCCCccCCHHHH
Confidence            344555666666666666666666666666666666666666666666666665 5666666666666666666666666


Q ss_pred             HHHHHhhCCCCCc
Q psy7454          86 KVHTKRYHPKMYD   98 (103)
Q Consensus        86 ~~H~~~~~~~~~~   98 (103)
                      ..|+++|+|++||
T Consensus       178 ~~H~~~H~~~k~~  190 (190)
T 2i13_A          178 NVHQRTHTGKKTS  190 (190)
T ss_dssp             HHHHTTC------
T ss_pred             HHHHHhcCCCCCC
Confidence            6666666666654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.92  E-value=3.1e-25  Score=112.83  Aligned_cols=87  Identities=32%  Similarity=0.653  Sum_probs=80.3

Q ss_pred             CCCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHH
Q psy7454           9 YRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALK   86 (103)
Q Consensus         9 ~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~   86 (103)
                      |+++|.|+  .|++.|.....|..|+++|.++++|.|..|++.|.....|..| +..|.++++|.|..|++.|.....|.
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~   79 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERK   79 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH-HHHHHCCCCEECTTTCCEESSHHHHH
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCcccCCHHHHHHH-HHHcCCCCCccCCCCCchhCCHHHHH
Confidence            46789998  5999999999999999999999999999999999999999998 88999999999999999999999999


Q ss_pred             HHHHhhCCCC
Q psy7454          87 VHTKRYHPKM   96 (103)
Q Consensus        87 ~H~~~~~~~~   96 (103)
                      .|+++|++++
T Consensus        80 ~H~~~H~~~k   89 (90)
T 1a1h_A           80 RHTKIHLRQK   89 (90)
T ss_dssp             HHHGGGGC--
T ss_pred             HHHHHhcccC
Confidence            9999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=2.9e-25  Score=116.33  Aligned_cols=95  Identities=13%  Similarity=0.159  Sum_probs=88.2

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCc
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARET   82 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~   82 (103)
                      .+++|.++++|.|+.|++.|.....|..|+++|  .++|.|.+|++.|.....|..| +. |.++++|.|..|++.|...
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H--~~~~~C~~C~~~f~~~~~l~~H-~~-H~~~~~~~C~~C~~~f~~~   82 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEH-ES-KCEYKKLTCLECMRTFKSS   82 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHHHHHH--HHSBCCTTTCCCBSSHHHHHHH-HH-HCSTGGGEEGGGTEECSSH
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHHHHHC--CCCccCCCCCCccCCHHHHHHH-HH-cCCCCCccCccccchhCCH
Confidence            467899999999999999999999999999998  4799999999999999999998 65 9999999999999999999


Q ss_pred             HHHHHHHH-hhCCCCCcccc
Q psy7454          83 QALKVHTK-RYHPKMYDVEY  101 (103)
Q Consensus        83 ~~l~~H~~-~~~~~~~~~~~  101 (103)
                      ..|..|++ .|.+++||...
T Consensus        83 ~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           83 FSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             HHHHHHHHHTSCCCCCCCCC
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            99999997 89999998653

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.91  E-value=1.4e-24  Score=108.59  Aligned_cols=82  Identities=24%  Similarity=0.553  Sum_probs=78.5

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHh
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      ||.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..| +..|.++++|.|..|++.|.....|..|+++
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~   79 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKCQVCGKAFSQSSNLITHSRK   79 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHH-HHHHHTCCCEECTTTSCEESSHHHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHH-HHHhcCCCCCcCCCcchhhCChHHHHHHHHh
Confidence            689999999999999999999999999999999999999999999998 8899999999999999999999999999999


Q ss_pred             hCC
Q psy7454          92 YHP   94 (103)
Q Consensus        92 ~~~   94 (103)
                      |+|
T Consensus        80 H~g   82 (82)
T 2kmk_A           80 HTG   82 (82)
T ss_dssp             HC-
T ss_pred             hCC
Confidence            975

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.91  E-value=4.9e-25  Score=117.98  Aligned_cols=93  Identities=30%  Similarity=0.535  Sum_probs=73.5

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCC--CCCccc
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCR--YCDYKA   79 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~--~C~~~f   79 (103)
                      +++| ++++|.|+.|++.|.....|..|+++|.++++|.|..  |++.|.....|..| ++.|.++++|.|.  .|++.|
T Consensus        27 ~~~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f  104 (124)
T 1ubd_C           27 LHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH-VRIHTGDRPYVCPFDGCNKKF  104 (124)
T ss_dssp             HGGG-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHH-HHHHHCCCCCCCCSTTCCCCC
T ss_pred             HHHc-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHH-HHHhCCCCceECCCCCCCCcc
Confidence            4456 6678888888888888888888888888888888875  88888888888887 7888888888885  488888


Q ss_pred             cCcHHHHHHHHhhCCCCCc
Q psy7454          80 RETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        80 ~~~~~l~~H~~~~~~~~~~   98 (103)
                      ...+.|..|+++|++++++
T Consensus       105 ~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C          105 AQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             SSTTTTHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHcccccC
Confidence            8888888888888888775

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.91  E-value=7.3e-25  Score=116.05  Aligned_cols=96  Identities=18%  Similarity=0.153  Sum_probs=86.8

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhh--cCCCCCee-cCCCCccc--cCchHHHHHHHHhcCCCCCeeCCCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGM--HLGEKPFT-CNMCEFKC--RDNRTLKAHHINIHTGQKPYPCRYCD   76 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~--h~~~~~~~-c~~C~~~~--~~~~~l~~h~~~~h~~~~~~~c~~C~   76 (103)
                      -|+++|.++++|.|+.|++.|.....|..|+++  |.+.+++. |..|++.|  .....|..| ++.|.+++||.|..|+
T Consensus         9 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H-~~~H~~~~~~~C~~C~   87 (115)
T 2dmi_A            9 LYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEM-EGKEDAQKVLKCMYCG   87 (115)
T ss_dssp             CCCCCCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCC-CCSCCCCSSCBCSSSC
T ss_pred             hheeeeCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHH-hhccCCCcceECCCCC
Confidence            467899999999999999999999999999998  77666654 99999999  888999998 8999999999999999


Q ss_pred             ccccCcHHHHHHHHhhCCCCCc
Q psy7454          77 YKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        77 ~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      +.|.....|..|++.++.....
T Consensus        88 k~f~~~~~L~~H~~~hh~~~~~  109 (115)
T 2dmi_A           88 HSFESLQDLSVHMIKTKHYQKV  109 (115)
T ss_dssp             CBCSSHHHHHHHHHHTTTTTCS
T ss_pred             CccCCHHHHHHHHHHhCCcccC
Confidence            9999999999999998866554

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.91  E-value=6.2e-24  Score=111.66  Aligned_cols=88  Identities=28%  Similarity=0.568  Sum_probs=83.9

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHH
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA   84 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~   84 (103)
                      ..|+++++|.| .|++.|.....|..|++.|.++++|.|..|++.|.....|..| ++.|.++++|.|..|++.|.....
T Consensus         3 ~~h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~   80 (110)
T 2csh_A            3 SGSSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIHTGIKPYECNICAKRFMWRDS   80 (110)
T ss_dssp             CCCCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHH-HTTTCCCCCEECSSSCCEESCHHH
T ss_pred             CCCCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHH-HHHcCCCCCeeCCCCcchhcCHHH
Confidence            46889999999 8999999999999999999999999999999999999999998 899999999999999999999999


Q ss_pred             HHHHHHhhCC
Q psy7454          85 LKVHTKRYHP   94 (103)
Q Consensus        85 l~~H~~~~~~   94 (103)
                      |..|++.++.
T Consensus        81 l~~H~~~~~~   90 (110)
T 2csh_A           81 FHRHVTSCTK   90 (110)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHccc
Confidence            9999998864

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.91  E-value=3.8e-24  Score=113.69  Aligned_cols=92  Identities=28%  Similarity=0.541  Sum_probs=85.4

Q ss_pred             CCCCceeeCC--CCCcccCchhHHHHHhhcCCCCCeecC--CCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcH
Q psy7454           8 AYRYKYVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQ   83 (103)
Q Consensus         8 ~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~   83 (103)
                      +++++|.|+.  |++.|.....|..|+++|.++++|.|.  .|++.|.....|..| +..|.++++|.|..|++.|....
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~   80 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH-QRRHTGVKPFQCKTCQRKFSRSD   80 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHH-HHHHHCCCCEECTTTCCEESCHH
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccCCCCCCcCccCCHHHHHHH-HHHcCCCCCccCCccCchhCCHH
Confidence            5678999987  999999999999999999999999999  799999999999998 88899999999999999999999


Q ss_pred             HHHHHHHhhCCCCCccc
Q psy7454          84 ALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        84 ~l~~H~~~~~~~~~~~~  100 (103)
                      .|..|+++|++++||..
T Consensus        81 ~l~~H~~~h~~~~~~~C   97 (119)
T 2jp9_A           81 HLKTHTRTHTGEKPFSC   97 (119)
T ss_dssp             HHHHHHHHHHTCCCEEC
T ss_pred             HHHHHHHHhcCCCCeeC
Confidence            99999999999998864

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.91  E-value=3.1e-24  Score=122.21  Aligned_cols=94  Identities=28%  Similarity=0.511  Sum_probs=42.9

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcH
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQ   83 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~   83 (103)
                      +++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|.....|..| +..|.++++|.|..|++.|....
T Consensus        41 ~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~  119 (190)
T 2i13_A           41 QRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAH-QRTHTGEKPYACPECGKSFSQLA  119 (190)
T ss_dssp             GGCC---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH-HHHHHTCCCEECTTTCCEESSHH
T ss_pred             HHHcCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHHHH-HHhcCCCCCCcCCCCCCccCCHH
Confidence            33444444555555555555555555555444444444444444444444444444 34444444444444444444444


Q ss_pred             HHHHHHHhhCCCCCc
Q psy7454          84 ALKVHTKRYHPKMYD   98 (103)
Q Consensus        84 ~l~~H~~~~~~~~~~   98 (103)
                      .|..|+++|++++||
T Consensus       120 ~l~~H~~~h~~~~~~  134 (190)
T 2i13_A          120 HLRAHQRTHTGEKPY  134 (190)
T ss_dssp             HHHHHHHHHHCCCCE
T ss_pred             HHHHHHHHhCCCCCe
Confidence            444444444444443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=1.2e-23  Score=112.38  Aligned_cols=91  Identities=22%  Similarity=0.316  Sum_probs=65.3

Q ss_pred             CCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHh---cCCCCCeeCCCCCccccCcHH
Q psy7454           8 AYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINI---HTGQKPYPCRYCDYKARETQA   84 (103)
Q Consensus         8 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~---h~~~~~~~c~~C~~~f~~~~~   84 (103)
                      +++.+|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..| +..   +.++++|.|..|++.|.....
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~~~~C~~C~~~f~~~~~   81 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSEQVFTCSVCQETFRRRME   81 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSCBCTTTCCBCSSHHHHHHH-HHHCCCCSCCCCEECSSSCCEESSHHH
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCeECCCCCchhcCHHHHHHH-HhhhhcCCCCCCeECCCCCCccCCHHH
Confidence            4556777777777777777777777777777777777777777777777776 443   456667777777777777777


Q ss_pred             HHHHHHhhCCCCCcc
Q psy7454          85 LKVHTKRYHPKMYDV   99 (103)
Q Consensus        85 l~~H~~~~~~~~~~~   99 (103)
                      |..|+++|++++||.
T Consensus        82 l~~H~~~h~~~~~~~   96 (124)
T 2dlq_A           82 LRLHMVSHTGEMPYK   96 (124)
T ss_dssp             HHHHHHHHSSSCSEE
T ss_pred             HHHHHHHcCCCCCcc
Confidence            777777777777764

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.90  E-value=2.8e-23  Score=106.52  Aligned_cols=87  Identities=25%  Similarity=0.488  Sum_probs=81.1

Q ss_pred             CCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCC--CCeeCCCCCccccCcHHH
Q psy7454           8 AYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ--KPYPCRYCDYKARETQAL   85 (103)
Q Consensus         8 ~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~--~~~~c~~C~~~f~~~~~l   85 (103)
                      +++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..| ++.|.++  ++|.|..|++.|.....|
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~~~C~~C~~~f~~~~~L   81 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKPYICQSCGKGFSRPDHL   81 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHH-HHHHCCCCCSSBCCSSSCCCBSSHHHH
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHH-HHHhcCCCCCceECCCccchhCCHHHH
Confidence            5778999999999999999999999999999999999999999999999998 8888886  899999999999999999


Q ss_pred             HHHHH-hhCCC
Q psy7454          86 KVHTK-RYHPK   95 (103)
Q Consensus        86 ~~H~~-~~~~~   95 (103)
                      ..|++ .|.++
T Consensus        82 ~~H~~~~H~~~   92 (95)
T 2yt9_A           82 NGHIKQVHSGP   92 (95)
T ss_dssp             HHHHHHTSCCC
T ss_pred             HHHHHHhcCCC
Confidence            99997 56654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.90  E-value=1.8e-24  Score=119.69  Aligned_cols=88  Identities=26%  Similarity=0.445  Sum_probs=80.7

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCC--CCccccCcHHHHHH
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYKARETQALKVH   88 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~~~f~~~~~l~~H   88 (103)
                      |.|+.|++.|.....|..|+++|.++++|.|..  |++.|.....|..| ++.|.++++|.|..  |++.|.....|..|
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H  141 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIH-KRTHTGEKPFKCEFEGCDRRFANSSDRKKH  141 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHHHHHHH-HTTTCSSCSBCCSSTTCCCCBSSHHHHHHS
T ss_pred             cCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHHHHHHH-HHhhCCCCCccCCCCCCCCccCCHHHHHHH
Confidence            789999999999999999999999999999988  99999999999998 88999999999997  99999999999999


Q ss_pred             HHhhCCCCCcccc
Q psy7454          89 TKRYHPKMYDVEY  101 (103)
Q Consensus        89 ~~~~~~~~~~~~~  101 (103)
                      +++|++++||...
T Consensus       142 ~~~H~~~k~~~c~  154 (155)
T 2rpc_A          142 MHVHTSDKSGPSS  154 (155)
T ss_dssp             STTTTSCCCSCSC
T ss_pred             HHHhcCCCCCCCC
Confidence            9999999998653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=1.6e-23  Score=111.90  Aligned_cols=92  Identities=24%  Similarity=0.465  Sum_probs=83.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhh---cCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccc
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGM---HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKA   79 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~---h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f   79 (103)
                      |+++|.++++|.|+.|++.|.....|..|+..   +.++++|.|.+|++.|.....|..| ++.|.++++|.|..|++.|
T Consensus        26 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f  104 (124)
T 2dlq_A           26 HNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQF  104 (124)
T ss_dssp             HHHHHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHH-HHHHSSSCSEECSSSCCEE
T ss_pred             HHHhCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHH-HHHcCCCCCccCCCccchh
Confidence            44567888899999999999999999999885   5788999999999999999999998 8999999999999999999


Q ss_pred             cCcHHHHHHHHh-hCCC
Q psy7454          80 RETQALKVHTKR-YHPK   95 (103)
Q Consensus        80 ~~~~~l~~H~~~-~~~~   95 (103)
                      .....|..|+.. |.++
T Consensus       105 ~~~~~l~~H~~~~H~~~  121 (124)
T 2dlq_A          105 MQKKDLQSHMIKLHSGP  121 (124)
T ss_dssp             SSHHHHHHHHHHTSSCS
T ss_pred             CCHHHHHHHHHHHCCCC
Confidence            999999999986 5544

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.89  E-value=4.1e-24  Score=113.56  Aligned_cols=89  Identities=31%  Similarity=0.571  Sum_probs=83.1

Q ss_pred             CCCCCCCCCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC--CCCCcc
Q psy7454           3 MPRPNAYRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC--RYCDYK   78 (103)
Q Consensus         3 ~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c--~~C~~~   78 (103)
                      |+++|.++++|.|+  .|++.|.....|..|+++|.++++|.|..|++.|.....|..| ++.|.++++|.|  +.|++.
T Consensus        27 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~  105 (119)
T 2jp9_A           27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTH-TRTHTGEKPFSCRWPSCQKK  105 (119)
T ss_dssp             HHHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH-HHHHHTCCCEECCSTTCCCE
T ss_pred             HHHhhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCccCCccCchhCCHHHHHHH-HHHhcCCCCeeCCCCCCccc
Confidence            34567788899999  7999999999999999999999999999999999999999998 899999999999  899999


Q ss_pred             ccCcHHHHHHHHhh
Q psy7454          79 ARETQALKVHTKRY   92 (103)
Q Consensus        79 f~~~~~l~~H~~~~   92 (103)
                      |.....|..|+++|
T Consensus       106 f~~~~~L~~H~~~H  119 (119)
T 2jp9_A          106 FARSDELVRHHNMH  119 (119)
T ss_dssp             ESSHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHhcC
Confidence            99999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.88  E-value=2.8e-23  Score=114.84  Aligned_cols=94  Identities=26%  Similarity=0.380  Sum_probs=70.2

Q ss_pred             CCCCCCceeeCCC-----CCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCC--CC
Q psy7454           6 PNAYRYKYVCFAC-----KFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRY--CD   76 (103)
Q Consensus         6 ~h~~~~~~~C~~C-----~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~   76 (103)
                      +|.++++|.|+.|     ++.|.....|..|+++|.++++|.|..  |++.|.....|..| ++.|.++++|.|..  |+
T Consensus        28 ~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~  106 (155)
T 2gli_A           28 IHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH-LRSHTGEKPYMCEHEGCS  106 (155)
T ss_dssp             SSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCSSHHHHHHH-HHHTTTCCCEECCSTTCC
T ss_pred             cCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCcccCHHHHHHH-HHHcCCCCCeeCCCCCCC
Confidence            5666777777643     377777777888877777777788874  88888888888777 67777777888877  88


Q ss_pred             ccccCcHHHHHHH-HhhCCCCCccc
Q psy7454          77 YKARETQALKVHT-KRYHPKMYDVE  100 (103)
Q Consensus        77 ~~f~~~~~l~~H~-~~~~~~~~~~~  100 (103)
                      +.|.....|..|+ +.|.+++||..
T Consensus       107 ~~f~~~~~L~~H~~~~H~~~~~~~C  131 (155)
T 2gli_A          107 KAFSNASDRAKHQNRTHSNEKPYVC  131 (155)
T ss_dssp             CEESSSSTTHHHHHHTTCSCCCEEC
T ss_pred             CccCCHHHHHHHHHHhcCCCCCeeC
Confidence            8888888888887 67777777643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.88  E-value=2.2e-22  Score=107.58  Aligned_cols=89  Identities=24%  Similarity=0.463  Sum_probs=82.9

Q ss_pred             CCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCC--CCccccCcHHH
Q psy7454          10 RYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYKARETQAL   85 (103)
Q Consensus        10 ~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~~~f~~~~~l   85 (103)
                      .++|.|+  .|++.|.....|..|+++| ++++|.|..|++.|.....|..| +..|.++++|.|..  |++.|.....|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h-~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~l   80 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNL   80 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHGGG-SCCCEECTTTCCEESSHHHHHHH-GGGTSCCCCEECCSTTCCCEESCHHHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHHHc-CCCCeECCCCCchhCCHHHHHHH-HHHcCCCCCeeCCCCCCcCccCCHHHH
Confidence            5689999  8999999999999999999 88999999999999999999998 89999999999986  99999999999


Q ss_pred             HHHHHhhCCCCCccc
Q psy7454          86 KVHTKRYHPKMYDVE  100 (103)
Q Consensus        86 ~~H~~~~~~~~~~~~  100 (103)
                      ..|+++|++++||..
T Consensus        81 ~~H~~~h~~~~~~~C   95 (124)
T 1ubd_C           81 RTHVRIHTGDRPYVC   95 (124)
T ss_dssp             HHHHHHHHCCCCCCC
T ss_pred             HHHHHHhCCCCceEC
Confidence            999999999999864

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.87  E-value=8.9e-22  Score=101.66  Aligned_cols=85  Identities=31%  Similarity=0.609  Sum_probs=79.8

Q ss_pred             CCCceeeCC--CCCcccCchhHHHHHhhcCCCCCeecC--CCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHH
Q psy7454           9 YRYKYVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA   84 (103)
Q Consensus         9 ~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~   84 (103)
                      .+++|.|+.  |++.|.....|..|+++|.++++|.|.  .|++.|.....|..| ++.|.++++|.|..|++.|.....
T Consensus        12 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~   90 (100)
T 2ebt_A           12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH-YRKHTGAKPFQCGVCNRSFSRSDH   90 (100)
T ss_dssp             SCCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHH-HHHHTSCCSCBCSSSCCBCSSHHH
T ss_pred             cCcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHH-HHHhCCCCCeECCCCcCccCCHHH
Confidence            356899996  999999999999999999999999996  699999999999998 899999999999999999999999


Q ss_pred             HHHHHHhhCC
Q psy7454          85 LKVHTKRYHP   94 (103)
Q Consensus        85 l~~H~~~~~~   94 (103)
                      |..|+++|++
T Consensus        91 l~~H~~~H~~  100 (100)
T 2ebt_A           91 LALHMKRHQN  100 (100)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhCC
Confidence            9999999874

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.87  E-value=7.1e-22  Score=100.08  Aligned_cols=83  Identities=31%  Similarity=0.626  Sum_probs=78.3

Q ss_pred             CCceeeCC--CCCcccCchhHHHHHhhcCCCCCeecC--CCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHH
Q psy7454          10 RYKYVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL   85 (103)
Q Consensus        10 ~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l   85 (103)
                      ..+|.|+.  |++.|.....|..|+++|.++++|.|+  .|++.|.....|..| +..|.++++|.|..|++.|.....|
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l   81 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH-YRKHTGHRPFQCQKCDRAFSRSDHL   81 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHH-HHHHHCCCCEECSSSSCEESSHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHH-HHHcCCCCCccCCCCCcccCCHHHH
Confidence            35799999  999999999999999999999999997  699999999999998 8999999999999999999999999


Q ss_pred             HHHHHhhC
Q psy7454          86 KVHTKRYH   93 (103)
Q Consensus        86 ~~H~~~~~   93 (103)
                      ..|+++|.
T Consensus        82 ~~H~~~H~   89 (89)
T 2wbs_A           82 ALHMKRHF   89 (89)
T ss_dssp             HHHGGGGC
T ss_pred             HHHHHhhC
Confidence            99999873

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.87  E-value=8.5e-23  Score=116.28  Aligned_cols=94  Identities=23%  Similarity=0.395  Sum_probs=50.9

Q ss_pred             CCCCCCceee--CCCCCcccCchhHHHHHhhcCCCCCeecC--CCCccccCchHHHHHHHHhc-CCCCCeeC--CCCCcc
Q psy7454           6 PNAYRYKYVC--FACKFYTYNTGNIKRHLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIH-TGQKPYPC--RYCDYK   78 (103)
Q Consensus         6 ~h~~~~~~~C--~~C~~~f~~~~~l~~h~~~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h-~~~~~~~c--~~C~~~   78 (103)
                      +|.++++|.|  +.|++.|.....|..|+++|.++++|.|.  .|++.|.....|..|....| .++++|.|  ..|++.
T Consensus        36 ~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~  115 (190)
T 1tf6_A           36 KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA  115 (190)
T ss_dssp             HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEE
T ss_pred             hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccc
Confidence            3444555555  45555555555555555555555555555  55555555555555521444 24445555  555555


Q ss_pred             ccCcHHHHHHHHhhCCCCCcc
Q psy7454          79 ARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        79 f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      |.....|..|+++|++++||.
T Consensus       116 f~~~~~L~~H~~~H~~~~~~~  136 (190)
T 1tf6_A          116 FKKHNQLKVHQFSHTQQLPYE  136 (190)
T ss_dssp             CSSHHHHHHHHGGGSSSCSSB
T ss_pred             cCCHHHHHHHHHHhCCCCCcc
Confidence            555555555555555555553

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.87  E-value=2.5e-22  Score=94.94  Aligned_cols=58  Identities=33%  Similarity=0.580  Sum_probs=43.7

Q ss_pred             CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      |+||.|.+||+.|...+.|..| +++|++++||.|.+||+.|...+.|..|+++|+||.
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H-~~~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRH-RRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHH-HHHHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHH-HHHhCCCcCeECCCCCCCcCCHHHHHHHhCccCCCC
Confidence            5777777777777777777776 677777777777777777777777777777777653

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.86  E-value=1.4e-21  Score=111.30  Aligned_cols=91  Identities=25%  Similarity=0.440  Sum_probs=83.5

Q ss_pred             CCCCCCCCCceeeC--CCCCcccCchhHHHHH-hhc-CCCCCeec--CCCCccccCchHHHHHHHHhcCCCCCeeCCC--
Q psy7454           3 MPRPNAYRYKYVCF--ACKFYTYNTGNIKRHL-GMH-LGEKPFTC--NMCEFKCRDNRTLKAHHINIHTGQKPYPCRY--   74 (103)
Q Consensus         3 ~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~-~~h-~~~~~~~c--~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--   74 (103)
                      |+++|.++++|.|+  .|++.|.....|..|+ +.| .++++|.|  ..|++.|.....|..| ++.|.++++|.|..  
T Consensus        63 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~~~  141 (190)
T 1tf6_A           63 HSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEG  141 (190)
T ss_dssp             HHTTTTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHH-HGGGSSSCSSBCCSSS
T ss_pred             HHHHccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHH-HHHhCCCCCccCCCCC
Confidence            56788999999999  8999999999999998 677 46789999  8899999999999998 89999999999988  


Q ss_pred             CCccccCcHHHHHHHHhhCC
Q psy7454          75 CDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        75 C~~~f~~~~~l~~H~~~~~~   94 (103)
                      |++.|...+.|..|+++|++
T Consensus       142 C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          142 CDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             CCCBCSSHHHHHHHHTSSCS
T ss_pred             CCchhcCHHHHHHHHHHhCC
Confidence            99999999999999999987

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=6.5e-22  Score=109.32  Aligned_cols=92  Identities=27%  Similarity=0.516  Sum_probs=81.2

Q ss_pred             CCCCCCCCCceeeCC--CCCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCC--CC
Q psy7454           3 MPRPNAYRYKYVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRY--CD   76 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~   76 (103)
                      |+++|.++++|.|+.  |++.|.....|..|+++|.++++|.|+.  |++.|...+.|..|..+.|.++++|.|..  |+
T Consensus        58 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~  137 (155)
T 2gli_A           58 HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCT  137 (155)
T ss_dssp             HTHHHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTC
T ss_pred             HHHhcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCc
Confidence            455677788999985  9999999999999999999999999998  99999999999998337899999999988  99


Q ss_pred             ccccCcHHHHHHHHhhCC
Q psy7454          77 YKARETQALKVHTKRYHP   94 (103)
Q Consensus        77 ~~f~~~~~l~~H~~~~~~   94 (103)
                      +.|...+.|..|+++|+|
T Consensus       138 ~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          138 KRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CEESSHHHHHHHHHHSCC
T ss_pred             cccCCHHHHHHHHHhhcC
Confidence            999999999999998875

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.85  E-value=2.5e-21  Score=107.06  Aligned_cols=93  Identities=22%  Similarity=0.359  Sum_probs=84.7

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhh-cCCCCC--------eecCCCCccccCchHHHHHHHHhcCCCCCeeCCC--C
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGM-HLGEKP--------FTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRY--C   75 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~-h~~~~~--------~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C   75 (103)
                      ..++.+|.|..|++.|.....|..|++. |.++.+        |.|..|++.|.....|..| ++.|.++++|.|..  |
T Consensus        20 ~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C   98 (155)
T 2rpc_A           20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRVHTGEKPFPCPFPGC   98 (155)
T ss_dssp             CTTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHH-THHHHCCCSEECSCTTT
T ss_pred             chhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHH-HHhcCCCCcccCCcCCC
Confidence            3456789999999999999999999987 776654        7899999999999999998 88999999999998  9


Q ss_pred             CccccCcHHHHHHHHhhCCCCCccc
Q psy7454          76 DYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        76 ~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      ++.|.....|..|+++|++++||..
T Consensus        99 ~~~f~~~~~L~~H~~~h~~~~~~~C  123 (155)
T 2rpc_A           99 GKIFARSENLKIHKRTHTGEKPFKC  123 (155)
T ss_dssp             CCEESCHHHHHHHHTTTCSSCSBCC
T ss_pred             CCccCCHHHHHHHHHhhCCCCCccC
Confidence            9999999999999999999999854

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.85  E-value=1.4e-21  Score=92.36  Aligned_cols=58  Identities=24%  Similarity=0.523  Sum_probs=55.2

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCC
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK   68 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~   68 (103)
                      ++||.|++||+.|.....|..|+++|++++||.|.+||+.|...+.|..| +++|++++
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~~L~~H-~~~Htgep   59 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH-LKVHQNKP   59 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHHHH-GGGGSCC-
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHHHHHHH-hCccCCCC
Confidence            68999999999999999999999999999999999999999999999998 89999874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=8.2e-22  Score=106.84  Aligned_cols=79  Identities=20%  Similarity=0.277  Sum_probs=71.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCC------CCeeCCCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ------KPYPCRYCD   76 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~------~~~~c~~C~   76 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|++++||.|++|++.|...+.|..| ++.+.++      ++|.|..|+
T Consensus        41 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~hh~~~p~~~~k~~~C~~C~  119 (133)
T 2lt7_A           41 HFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSH-IKSVHSQDPSGDSKLYRLHPCR  119 (133)
T ss_dssp             HHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESSHHHHHHH-HHHHTCCCTTSSSCCEEECCCC
T ss_pred             HHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCCHHHHHHH-hHHhcCCCCCCCCCCeecCCCC
Confidence            456788999999999999999999999999999999999999999999999999998 7776554      468999999


Q ss_pred             ccccCc
Q psy7454          77 YKARET   82 (103)
Q Consensus        77 ~~f~~~   82 (103)
                      +.|...
T Consensus       120 k~~~~~  125 (133)
T 2lt7_A          120 SLQIRQ  125 (133)
T ss_dssp             SSCCCC
T ss_pred             chhhhc
Confidence            988754

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.84  E-value=1.6e-22  Score=102.47  Aligned_cols=83  Identities=22%  Similarity=0.351  Sum_probs=76.9

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHH
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT   89 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~   89 (103)
                      +++|.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|..| +..+.+ .+|.|..|++.|.....|..|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~h~~-~~~~c~~C~~~f~~~~~L~~H~   78 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-RDIQHI-LPILEDKVEELLSKNYHLENEV   78 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH-HHHHTH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCHHHHHHH-HHHhCC-CcchHHHHHHHHHHHhhhHHHH
Confidence            46899999999999999999999999999999999999999999999998 777764 7899999999999999999999


Q ss_pred             HhhCC
Q psy7454          90 KRYHP   94 (103)
Q Consensus        90 ~~~~~   94 (103)
                      +.+++
T Consensus        79 ~~~h~   83 (88)
T 1llm_C           79 ARLKK   83 (88)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98653

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.83  E-value=1.6e-20  Score=94.19  Aligned_cols=78  Identities=27%  Similarity=0.554  Sum_probs=73.9

Q ss_pred             ceee--CCCCCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCC---CCccccCcHH
Q psy7454          12 KYVC--FACKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRY---CDYKARETQA   84 (103)
Q Consensus        12 ~~~C--~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~---C~~~f~~~~~   84 (103)
                      ||.|  +.|++.|.....|..|+++|.++++|.|+.  |++.|.....|..| ++.|.+   |.|..   |++.|...+.
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H-~~~h~~---~~C~~~~~C~~~f~~~~~   76 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH-EKVHAG---YPCKKDDSCSFVGKTWTL   76 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTTCCEECCSTTCCCEESSHHHHHHH-HHHHHS---EECCSCSSCCCEESSHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCCCCeeCCCCCCcCccCCHHHHHHH-HHHhCC---CCCCCCCCCCCccCCHHH
Confidence            6899  999999999999999999999999999988  99999999999998 888887   99999   9999999999


Q ss_pred             HHHHHHhhC
Q psy7454          85 LKVHTKRYH   93 (103)
Q Consensus        85 l~~H~~~~~   93 (103)
                      |..|+++|+
T Consensus        77 l~~H~~~hh   85 (85)
T 2j7j_A           77 YLKHVAECH   85 (85)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHhcC
Confidence            999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=5.5e-20  Score=92.50  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCC----CCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCc
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE----KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDY   77 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~----~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~   77 (103)
                      -|+++|.++++|.|+.|++.|.....|..|++.+...    ++|.|..|++.|.....|..| ++.|.+++++.|..|+.
T Consensus         5 ~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~~~~~~~~~~   83 (86)
T 1x6h_A            5 SSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH-ADNCAGPDGVEGENSGP   83 (86)
T ss_dssp             CCSTTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHH-HHHCCCCCSCCCCCCCC
T ss_pred             cccceecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHH-HHHccCCCCcccCCCCC
Confidence            3778899999999999999999999999998776554    789999999999999999998 88899999999998887


Q ss_pred             cc
Q psy7454          78 KA   79 (103)
Q Consensus        78 ~f   79 (103)
                      .|
T Consensus        84 ~~   85 (86)
T 1x6h_A           84 SS   85 (86)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=2.8e-20  Score=92.30  Aligned_cols=72  Identities=21%  Similarity=0.418  Sum_probs=67.3

Q ss_pred             CCCCceeeCC--CCCcccCchhHHHHHh-hcCCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCCCCcccc
Q psy7454           8 AYRYKYVCFA--CKFYTYNTGNIKRHLG-MHLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR   80 (103)
Q Consensus         8 ~~~~~~~C~~--C~~~f~~~~~l~~h~~-~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~   80 (103)
                      +++++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..| ++.|.++++|.|..|++.|.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C~k~F~   79 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH-MKLHSDTRDYICEFSGPSSG   79 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHH-HHHHHTSCCCSCCSSSCCCC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHH-HHHhCCCCCeeCCCCCCCCC
Confidence            5678899987  9999999999999998 799999999999  99999999999998 88999999999999999884

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-20  Score=97.59  Aligned_cols=79  Identities=18%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             ccCchhHHHHHhhcCCCCCeecCCCCcccc-CchHHHHHHHHhcCC-CCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          22 TYNTGNIKRHLGMHLGEKPFTCNMCEFKCR-DNRTLKAHHINIHTG-QKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        22 f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~-~~~~l~~h~~~~h~~-~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.....+..|+++|.++++|.|..|++.|. ....|..| ++.|.+ +++|.|.+|++.|.....|..|+++|++++|+.
T Consensus         6 ~~~~~~~~~h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H-~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~kp~~   84 (98)
T 2gqj_A            6 SGPGGPEEQWQRAIHERGEAVCPTCNVVTRKTLVGLKKH-MEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSD   84 (98)
T ss_dssp             CCCCCSCSHHHHTTTTTSCCCCTTTCCCCSSCSHHHHHH-HHHHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCSCSSC
T ss_pred             CCCCCcHHHHHHHhccCCCcCCCCCCCChhhhHHHHHHH-HHHHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCCCCCC
Confidence            444556778999999999999999999999 99999998 788888 899999999999999999999999999999875


Q ss_pred             cc
Q psy7454         100 EY  101 (103)
Q Consensus       100 ~~  101 (103)
                      ..
T Consensus        85 ~~   86 (98)
T 2gqj_A           85 AE   86 (98)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=2.4e-19  Score=88.64  Aligned_cols=64  Identities=22%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             cCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        35 h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.++++|.|.+|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus        13 ~~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~p~~   76 (77)
T 2cot_A           13 QRERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS   76 (77)
T ss_dssp             CCCSCSSBCSSSCCBCSCHHHHHHH-HTTTCCSCSEECSSSCCEESSHHHHHHHGGGSCCCCCCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHH-HHHcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCCCCCC
Confidence            3455666666666666666666665 566666666666666666666666666666666666653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.79  E-value=3.4e-19  Score=87.45  Aligned_cols=64  Identities=31%  Similarity=0.616  Sum_probs=54.4

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .+.++++|.|..|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+++|++++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H-~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASH-KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHH-HHHHCCCCSEECTTTCCEESCHHHHHHHHHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHH-HHHcCCCCCEECCCCCchhCCHHHHHHHHHhcCCCCCC
Confidence            45677888888888888888888887 78888888888888888888888888888888888886

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=3.1e-19  Score=91.78  Aligned_cols=78  Identities=14%  Similarity=0.176  Sum_probs=69.6

Q ss_pred             CcccCchhHHHHHhhcCCCCCeecCCCCccc-cCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHH-HHhhCCCCC
Q psy7454          20 FYTYNTGNIKRHLGMHLGEKPFTCNMCEFKC-RDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVH-TKRYHPKMY   97 (103)
Q Consensus        20 ~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~-~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H-~~~~~~~~~   97 (103)
                      ..|.....|..|++.+.++++|.|..|++.| .....|..| ++.| ++++|.|.+|++.|.....|..| +.+|+++.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~C~~C~k~F~~~~~~L~~H-~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~   91 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLEIVDKGSVSCPTCQAVGRKTIEGLKKH-MENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPS   91 (96)
T ss_dssp             CSSCTTCHHHHHHHHHHHTSCEECTTTCSCEESSHHHHHHH-HHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSS
T ss_pred             CCCCCchHHHHHHHHhcCCCCcCCCCCCCCcccCHHHHHHH-HHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCC
Confidence            3556677888999999999999999999999 999999998 8899 99999999999999999999999 888886655


Q ss_pred             cc
Q psy7454          98 DV   99 (103)
Q Consensus        98 ~~   99 (103)
                      +.
T Consensus        92 ~~   93 (96)
T 2ctd_A           92 GP   93 (96)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.79  E-value=4.1e-19  Score=92.06  Aligned_cols=71  Identities=20%  Similarity=0.433  Sum_probs=59.8

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHh-hc---CCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLG-MH---LGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCD   76 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h---~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~   76 (103)
                      ...|+++|.|+.|++.|.....|..|++ +|   .+++||.|..||+.|...+.|..|.++.|.+++||.|.++.
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C~~~~   86 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVK   86 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEEEECC
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeCCccc
Confidence            3456788999999999999999999987 58   56889999999999999999998735789999999998754

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.3e-18  Score=84.51  Aligned_cols=63  Identities=27%  Similarity=0.753  Sum_probs=39.9

Q ss_pred             cCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        35 h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      +.++++|.|..|++.|.....|..| ++.|.++++|.|.+|++.|.....|..|+++|++++|.
T Consensus         4 ~~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~   66 (70)
T 1x5w_A            4 GSSGHPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSG   66 (70)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHH-HGGGCCSCSEECSSSSCEESSHHHHHHHHHHHHSSSCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHH-HHHcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCCCCC
Confidence            4555666666666666666666665 55666666666666666666666666666666666554

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=1.2e-18  Score=86.12  Aligned_cols=67  Identities=27%  Similarity=0.516  Sum_probs=62.8

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC   72 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c   72 (103)
                      ..+.++++|.|+.|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.+++||.|
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~p~~C   77 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH-HRVHTGSGPSSG   77 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHHHH-GGGSCCCCCCCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHHHH-HHHhCCCCCCCC
Confidence            3456788999999999999999999999999999999999999999999999998 899999999987

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=85.35  Aligned_cols=64  Identities=36%  Similarity=0.697  Sum_probs=60.2

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCe
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY   70 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~   70 (103)
                      .+.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|.....|..| ++.|.+++||
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~kp~   74 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH-TRIHSGEKPY   74 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHHHH-HHHHCCSCCC
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHHHH-HHhcCCCCCC
Confidence            456788999999999999999999999999999999999999999999999998 8999999875

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=9.3e-19  Score=85.48  Aligned_cols=63  Identities=32%  Similarity=0.593  Sum_probs=38.6

Q ss_pred             hhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          33 GMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        33 ~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ++|.++++|.|..|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+++|+++.
T Consensus         7 ~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~   69 (72)
T 1x6e_A            7 GIHSGEKPYGCVECGKAFSRSSILVQH-QRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGP   69 (72)
T ss_dssp             CTTTTCCCEECSSSCCEESSHHHHHHH-HHGGGCSCCEECSSSCCEESSHHHHHHHHHHHHSSS
T ss_pred             cccCCCCCccCCCCCCccCCHHHHHHH-HHhcCCCCCeECCCCCcccCCHHHHHHHHHhcCCCC
Confidence            445556666666666666666666665 555666666666666666666666666666665543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.76  E-value=2.1e-18  Score=86.66  Aligned_cols=62  Identities=16%  Similarity=0.421  Sum_probs=47.8

Q ss_pred             hhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHH-hhCCC
Q psy7454          33 GMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTK-RYHPK   95 (103)
Q Consensus        33 ~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~-~~~~~   95 (103)
                      ..+...++|.|++|++.|.....|..| ++.|.+++||.|.+|++.|.....|..|++ .|.+|
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H-~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERH-LRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHH-HHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhh-hhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            445667778888888888888888887 778888888888888888888888888864 45554

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=2.3e-18  Score=84.06  Aligned_cols=65  Identities=26%  Similarity=0.408  Sum_probs=60.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK   68 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~   68 (103)
                      ..++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.++.
T Consensus         5 ~~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~   69 (72)
T 1x6e_A            5 SSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH-QRIHTSGP   69 (72)
T ss_dssp             CCCTTTTCCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHHHHHHH-HHHHHSSS
T ss_pred             CCcccCCCCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHHHHHHH-HHhcCCCC
Confidence            467899999999999999999999999999999999999999999999999999998 88888764

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.76  E-value=1.3e-18  Score=87.45  Aligned_cols=73  Identities=18%  Similarity=0.322  Sum_probs=65.5

Q ss_pred             hHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCC----CCeeCCCCCccccCcHHHHHHHHhhCCCCCccc
Q psy7454          27 NIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ----KPYPCRYCDYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        27 ~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~----~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      .+..|+++|.++++|.|..|++.|.....|..| ++.+..+    ++|.|..|++.|.....|..|+++|+++.++..
T Consensus         2 s~~~H~~~H~~~k~~~C~~C~~~f~~~~~l~~H-~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~   78 (86)
T 1x6h_A            2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH-FKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEG   78 (86)
T ss_dssp             TTTCCSTTCCCCCCEECSSSSCEESSHHHHHHH-HHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCCCSCCC
T ss_pred             CcccccceecCCCCCcCCCCCCccCCHHHHHHH-HHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCCCCccc
Confidence            356789999999999999999999999999998 6665544    789999999999999999999999999998854

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=9.8e-19  Score=86.40  Aligned_cols=65  Identities=31%  Similarity=0.576  Sum_probs=41.8

Q ss_pred             HHHHhhcCCCCCeecCCCCccccCchHHHHHHHH-hcCCC-CCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          29 KRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHIN-IHTGQ-KPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        29 ~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~-~h~~~-~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      .+|+++|.++++|.|.+|++.|.....|..| +. .|.++ ++|.|..|++.|.....|..|++++++
T Consensus         4 ~~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~   70 (77)
T 2ct1_A            4 GSSGRTHSGEKPYECYICHARFTQSGTMKMH-ILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHS   70 (77)
T ss_dssp             CCCCCCCSCCCSEECTTTCCEESCHHHHHHH-HHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSC
T ss_pred             CccccccCCCCCeECCCcCchhCCHHHHHHH-HHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCC
Confidence            3456666666666666666666666666666 43 45543 567777777777777777777666443

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=3.2e-18  Score=88.70  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=60.2

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHH-hc---CCCCCeeCCCCCccccCcHHHHHH-HHhhCCCCCccc
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHIN-IH---TGQKPYPCRYCDYKARETQALKVH-TKRYHPKMYDVE  100 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~-~h---~~~~~~~c~~C~~~f~~~~~l~~H-~~~~~~~~~~~~  100 (103)
                      .-.+++||.|..|++.|...+.|..| ++ .|   .+++||.|..||+.|...+.|..| +++|++++||..
T Consensus        12 ~~~gekpy~C~~Cgk~F~~~~~L~~H-~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htgekpy~C   82 (102)
T 2ghf_A           12 NKKVEGGYECKYCTFQTPDLNMFTFH-VDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKL   82 (102)
T ss_dssp             CCCCCSSEECSSCSCEESCHHHHHHH-HHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTCCCEEE
T ss_pred             cCCCCcCcCCCCCCCccCCHHHHHHH-HHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCCCCeeC
Confidence            44689999999999999999999998 65 58   668999999999999999999999 899999999964

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=6.4e-18  Score=82.02  Aligned_cols=64  Identities=20%  Similarity=0.497  Sum_probs=60.1

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCe
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY   70 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~   70 (103)
                      .|+++++|.|+.|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.+++|.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H-~~~h~~~~p~   66 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKFHGDMSG   66 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHHH-HHHHHSSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHHH-HHHHhCCCCC
Confidence            578899999999999999999999999999999999999999999999999998 8888888764

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.74  E-value=1.6e-17  Score=82.02  Aligned_cols=68  Identities=22%  Similarity=0.403  Sum_probs=58.8

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHh-hcCCC-CCeecCCCCccccCchHHHHHHHHhcCCCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLG-MHLGE-KPFTCNMCEFKCRDNRTLKAHHINIHTGQKP   69 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~-~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~   69 (103)
                      -|+++|.++++|.|+.|++.|.....|..|++ .|.++ ++|.|..|++.|.....|..|....|..+.|
T Consensus         5 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p   74 (77)
T 2ct1_A            5 SSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGP   74 (77)
T ss_dssp             CCCCCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCSCC
T ss_pred             ccccccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            37889999999999999999999999999987 67764 8999999999999999999994334655554

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=6.4e-18  Score=81.09  Aligned_cols=61  Identities=23%  Similarity=0.456  Sum_probs=39.8

Q ss_pred             hhcCCCCCeecCCCCccccCchHHHHHHHHh-c-CCCCCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          33 GMHLGEKPFTCNMCEFKCRDNRTLKAHHINI-H-TGQKPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        33 ~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~-h-~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ++|.++++|.|..|++.|.....|..| +.. | .++++|.|..|++.|...+.|..|++.+++
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H-~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            3 FTKEGEHTYRCKVCSRVYTHISNFCRH-YVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             CEEEETTEEECTTTCCEESSHHHHHHH-HHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cccCCCcceECCCCcchhCCHHHHHHH-HHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            445666666666666666666666666 444 5 466667777777777777777777666654

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=84.13  Aligned_cols=64  Identities=20%  Similarity=0.299  Sum_probs=57.6

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK   68 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~   68 (103)
                      .++.+.++|.|++|++.|.....|..|+++|++++||.|.+|++.|...+.|..|..+.|.+|.
T Consensus        21 ~~~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           21 GLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             SSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            4556677899999999999999999999999999999999999999999999999556787764

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.72  E-value=5.1e-19  Score=95.16  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=69.5

Q ss_pred             CceeeCCCCCccc------CchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHH
Q psy7454          11 YKYVCFACKFYTY------NTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQA   84 (103)
Q Consensus        11 ~~~~C~~C~~~f~------~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~   84 (103)
                      +.+.|++|+..|.      ....|..|+ .|.+++||.|..|++.|.....|..| ++.|  ++||.|..|++.|...+.
T Consensus        40 ~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~h~~~~~~~C~~C~k~f~~~~~l~~H-~~~H--~~~~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           40 KRLIRAIVKTLIHNPQLLDESSYLYRLL-ASKAISQFVCPLCLMPFSSSVSLKQH-IRYT--EHTKVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHHHCGGGTTTHHHHHHHH-HHHHHCSEECTTTCCEESSHHHHHHH-HHHT--CCCCBCTTTCCBCSSHHH
T ss_pred             CcccchhhhcccCCCcccCCHHHHHHHH-HhCCCCCeECCCCCcccCCHhHHHHH-HHHC--CCCCCCCCCCcccCCHHH
Confidence            3466777766655      345566665 57889999999999999999999998 8888  889999999999999999


Q ss_pred             HHHHHHhhCCCC
Q psy7454          85 LKVHTKRYHPKM   96 (103)
Q Consensus        85 l~~H~~~~~~~~   96 (103)
                      |..|+++|+++.
T Consensus       116 l~~H~~~h~~~~  127 (129)
T 2wbt_A          116 ALDHVCKKHNIC  127 (129)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHHCCcc
Confidence            999999999864

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.72  E-value=7.5e-18  Score=80.84  Aligned_cols=63  Identities=22%  Similarity=0.346  Sum_probs=55.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhh-c-CCCCCeecCCCCccccCchHHHHHHHHhcCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGM-H-LGEKPFTCNMCEFKCRDNRTLKAHHINIHTG   66 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~-h-~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~   66 (103)
                      ++++|.++++|.|+.|++.|.....|..|++. | .++++|.|+.|++.|...+.|..| ++.+.+
T Consensus         1 i~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H-~~~~H~   65 (66)
T 2drp_A            1 MEFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH-VKIIHK   65 (66)
T ss_dssp             --CEEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHH-HHHHTC
T ss_pred             CccccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHH-HHHHcC
Confidence            46789999999999999999999999999988 7 689999999999999999999998 666543

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=1.1e-18  Score=90.03  Aligned_cols=69  Identities=20%  Similarity=0.352  Sum_probs=63.6

Q ss_pred             CCCCCCCCCceeeCCCCCccc-CchhHHHHHhhcCC-CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTY-NTGNIKRHLGMHLG-EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC   72 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~-~~~~l~~h~~~h~~-~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c   72 (103)
                      |+++|.++++|.|+.|++.|. ....|..|+++|.+ +++|.|.+|++.|.....|..| ++.|.+++|...
T Consensus        15 h~~~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H-~~~h~~~kp~~~   85 (98)
T 2gqj_A           15 WQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH-TMAEHSAKPSDA   85 (98)
T ss_dssp             HHHTTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHHHHHHH-HHHHSCSCSSCC
T ss_pred             HHHHhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHHHHHHH-HHHHcCCCCCCC
Confidence            567899999999999999999 99999999999998 9999999999999999999998 889999888543

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.71  E-value=2e-17  Score=77.17  Aligned_cols=55  Identities=36%  Similarity=0.780  Sum_probs=36.6

Q ss_pred             CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      +++|.|..|++.|.....|..| ++.|.+++||.|..|++.|.....|..|+++|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIH-LRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHH-HHHHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHH-HHHcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            4566777777777777777776 666666777777777777777777777776665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=6.3e-17  Score=79.98  Aligned_cols=65  Identities=18%  Similarity=0.338  Sum_probs=43.7

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhhcCC---CCCeecCCCCccccCchHHHHHHHHhcCCCCCee
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLG---EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYP   71 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~---~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~   71 (103)
                      |+++++|.|+.|++.|.....|..|+++|.+   +++|.|..|++.|.....|..|....|.++++..
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCc
Confidence            5667777777777777777777777777664   6677777777777777777776335566555543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.70  E-value=1e-17  Score=87.22  Aligned_cols=69  Identities=25%  Similarity=0.415  Sum_probs=63.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC   72 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c   72 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.++++|.+
T Consensus        36 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H-~~~H~~~~~~~~  104 (106)
T 2ee8_A           36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH-KTLHMQTSSPTA  104 (106)
T ss_dssp             HHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHHHHHHH-HHHTTSCCCCCC
T ss_pred             HHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHHHHHHH-HHHhCCCCCCcC
Confidence            455678888999999999999999999999999999999999999999999999998 899999998754

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.69  E-value=8.2e-17  Score=75.01  Aligned_cols=56  Identities=29%  Similarity=0.674  Sum_probs=35.5

Q ss_pred             CeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ||.|..|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+++|++++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKH-IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHH-HHHTSSCCCEECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHH-HHhcCCCCCccCCCCCchhcCHHHHHHHHHHhcccC
Confidence            35566666666666666665 556666666666666666666666666666666543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=6.4e-17  Score=79.94  Aligned_cols=66  Identities=20%  Similarity=0.541  Sum_probs=58.2

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHHhcCC---CCCeeCCCCCccccCcHHHHHHHH-hhCCCCCccc
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG---QKPYPCRYCDYKARETQALKVHTK-RYHPKMYDVE  100 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~---~~~~~c~~C~~~f~~~~~l~~H~~-~~~~~~~~~~  100 (103)
                      .|+++++|.|.+|++.|.....|..| ++.|.+   +++|.|..|++.|.....|..|++ .|.++.+...
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~   70 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWH-QRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ   70 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHH-HHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTTSSCCS
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHH-HHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCCCCCcc
Confidence            37889999999999999999999998 888885   899999999999999999999995 5666666543

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.68  E-value=9.3e-18  Score=86.22  Aligned_cols=64  Identities=19%  Similarity=0.286  Sum_probs=56.5

Q ss_pred             CCCCCCceeeCCCCCcc-cCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCe
Q psy7454           6 PNAYRYKYVCFACKFYT-YNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY   70 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f-~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~   70 (103)
                      ++.++++|.|+.|++.| .....|..|+++| ++++|.|.+|++.|.....|..|.+..|.++..+
T Consensus        28 ~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~p~~   92 (96)
T 2ctd_A           28 EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSG   92 (96)
T ss_dssp             HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCCSSC
T ss_pred             HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCCCCC
Confidence            34567899999999999 9999999999999 9999999999999999999999746788865444

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.68  E-value=9.1e-17  Score=82.16  Aligned_cols=66  Identities=27%  Similarity=0.662  Sum_probs=61.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP   69 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~   69 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.++++
T Consensus        27 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~   92 (96)
T 2dmd_A           27 HMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH-LRSHTGDSG   92 (96)
T ss_dssp             HGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHHHHHHH-HTTCCSCCC
T ss_pred             HHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHH-HHHhcCCCC
Confidence            567888899999999999999999999999999999999999999999999999998 889988764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.67  E-value=8.1e-17  Score=75.03  Aligned_cols=56  Identities=27%  Similarity=0.570  Sum_probs=49.2

Q ss_pred             CCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcC
Q psy7454           9 YRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT   65 (103)
Q Consensus         9 ~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~   65 (103)
                      |+++|.|+.|++.|.....|..|+++|.++++|.|+.|++.|.....|..| ++.|.
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~hh   56 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH-LERHH   56 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH-HHHHC
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHHHHHHH-HHHhc
Confidence            467899999999999999999999999999999999999999999999998 66654

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.67  E-value=1.7e-17  Score=83.96  Aligned_cols=65  Identities=29%  Similarity=0.511  Sum_probs=58.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK   68 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~   68 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|..| ++.|.+++
T Consensus        25 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~k   89 (90)
T 1a1h_A           25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH-TKIHLRQK   89 (90)
T ss_dssp             HHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHHHHHHH-HGGGGC--
T ss_pred             HHHHhCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHHHHHHH-HHHhcccC
Confidence            345677888999999999999999999999999999999999999999999999998 89998865

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.67  E-value=1.9e-16  Score=73.75  Aligned_cols=56  Identities=25%  Similarity=0.634  Sum_probs=52.8

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQK   68 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~   68 (103)
                      ||.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|..| ++.|.+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~k   56 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH-MKSKAHSK   56 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHHHHHHH-HHSSSSCC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHHHHHHH-HHHhcccC
Confidence            689999999999999999999999999999999999999999999998 88888765

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=6.3e-16  Score=76.40  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=59.2

Q ss_pred             CCCCCeecCC--CCccccCchHHHHHHHH-hcCCCCCeeCCC--CCccccCcHHHHHHHHhhCCCCCccc
Q psy7454          36 LGEKPFTCNM--CEFKCRDNRTLKAHHIN-IHTGQKPYPCRY--CDYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        36 ~~~~~~~c~~--C~~~~~~~~~l~~h~~~-~h~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      +++++|.|..  |++.|.....|..| ++ .|.++++|.|..  |++.|.....|..|+++|++++||..
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H-~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C   71 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHH-KKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC   71 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHH-HHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSC
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHH-HHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeC
Confidence            4678999987  99999999999998 67 799999999999  99999999999999999999999853

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=5.8e-16  Score=75.52  Aligned_cols=58  Identities=31%  Similarity=0.666  Sum_probs=37.2

Q ss_pred             hcCCCCCeecC--CCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          34 MHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        34 ~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      ++.++++|.|+  .|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+++|
T Consensus        13 ~~~~~~~~~C~~~~C~k~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H   72 (73)
T 1f2i_G           13 VVPKMRPYACPVESCDRRFSRSDELTRH-IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH   72 (73)
T ss_dssp             CCCCCCCEECSSTTBCCEESSHHHHHHH-HHHHHCCCCEECTTTCCEESCHHHHHHHHTTC
T ss_pred             cCCCCCccCCcCCCCCCccCCHHHHHHH-HHhhCCCCCeECCCCCchhCCHHHHHHHHHhc
Confidence            45556666665  366666666666665 56666666666666666666666666666655

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=7.6e-16  Score=80.57  Aligned_cols=65  Identities=23%  Similarity=0.366  Sum_probs=61.2

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCccc
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      .|+++++|.| .|++.|.....|..| +..|.++++|.|..|++.|.....|..|++.|+++++|..
T Consensus         4 ~h~~~k~~~C-~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C   68 (110)
T 2csh_A            4 GSSGDKLYPC-QCGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYEC   68 (110)
T ss_dssp             CCCCCCCEEC-TTSCEESSHHHHHHH-HHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEEC
T ss_pred             CCCCCCCEec-cCCCccCCHHHHHHH-HHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeC
Confidence            5788999999 999999999999998 8899999999999999999999999999999999999853

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=2.1e-18  Score=84.13  Aligned_cols=65  Identities=14%  Similarity=0.181  Sum_probs=44.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|+.|++.|.....|..       +++|.|..|++.|...+.|..| ++.|.++++|.|.+|
T Consensus         9 H~~~h~~~~~~~C~~C~k~f~~~~~l~~-------~~~~~C~~C~~~f~~~~~l~~H-~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A            9 RQKIHLGDRSQKCSKCGIIFIRRSTLSR-------RKTPMCEKCRKDSCQEAALNKD-EGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCCCCCSEEECSSSCCEEECCCCCCC-------SSSCCCHHHHHTCSCCCSSCCC-SSCCCCCCCSSCCCC
T ss_pred             HHHHhCCCCCeeCCcccchhCCHHHhCc-------CCCCCCCCCChhhcCHHHHHHH-HHhhcCCCCCCCCCC
Confidence            5666777777777777777766665554       5667777777777777777776 666777777777665

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=6.5e-16  Score=72.65  Aligned_cols=49  Identities=33%  Similarity=0.690  Sum_probs=27.8

Q ss_pred             CeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHH
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHT   89 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~   89 (103)
                      ||.|..|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~   50 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRH-YRSHTNEKPYPCGLCNRAFTRRDLLIRHA   50 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHH-HHTTTSSCSEECTTTCCEESSHHHHHHHH
T ss_pred             cCcCCCCccccCCHHHHHHH-HHHhCCCCCccCCCCCCccCCHHHHHHHH
Confidence            45555555555555555555 45555555555555555555555555554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.63  E-value=6.2e-17  Score=80.50  Aligned_cols=63  Identities=27%  Similarity=0.443  Sum_probs=56.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG   66 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~   66 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|..| ++.|.+
T Consensus        20 H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~g   82 (82)
T 2kmk_A           20 HLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH-SRKHTG   82 (82)
T ss_dssp             HHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHHHHHHH-HHHHC-
T ss_pred             HHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChHHHHHH-HHhhCC
Confidence            345677888999999999999999999999999999999999999999999999998 787764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=5.8e-16  Score=72.83  Aligned_cols=57  Identities=30%  Similarity=0.592  Sum_probs=52.0

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ   67 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~   67 (103)
                      ++|.|+.|++.|.....|..|+++|.++++|.|..|++.|...+.|..|.+..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            479999999999999999999999999999999999999999999999833677764

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-17  Score=87.60  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             chhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHh--cCCCCCe-eCCCCCccc--cCcHHHHHHHHhhCCCCCcc
Q psy7454          25 TGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINI--HTGQKPY-PCRYCDYKA--RETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        25 ~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~--h~~~~~~-~c~~C~~~f--~~~~~l~~H~~~~~~~~~~~   99 (103)
                      ...|..|+++|.++++|.|..|++.|.....|..| ++.  +.+++++ .|..|++.|  .....|..|+++|++++||.
T Consensus         4 ~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~   82 (115)
T 2dmi_A            4 GSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH-MNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLK   82 (115)
T ss_dssp             CCCCCCCCCCCCCCCSEEBSSSSCEESSHHHHHHH-HHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCB
T ss_pred             chhhhhheeeeCCCCCEECCccCchhcCHHHHHHH-HHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceE
Confidence            34577899999999999999999999999999998 777  7666665 499999999  89999999999999999985


Q ss_pred             c
Q psy7454         100 E  100 (103)
Q Consensus       100 ~  100 (103)
                      .
T Consensus        83 C   83 (115)
T 2dmi_A           83 C   83 (115)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.62  E-value=2.5e-15  Score=76.57  Aligned_cols=63  Identities=24%  Similarity=0.500  Sum_probs=59.1

Q ss_pred             CCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCC--CCcc
Q psy7454          36 LGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPK--MYDV   99 (103)
Q Consensus        36 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~--~~~~   99 (103)
                      .++++|.|..|++.|.....|..| +..|.++++|.|..|++.|.....|..|++.|+++  ++|.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~   67 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI   67 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHH-HHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBC
T ss_pred             CCCCCeECCCCCCccCChHHHHHH-HHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceE
Confidence            468899999999999999999998 88999999999999999999999999999999987  7774

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.1e-15  Score=68.20  Aligned_cols=44  Identities=18%  Similarity=0.215  Sum_probs=35.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             ccCCcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            66778888888888888888888888888888888888888776

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=9.8e-16  Score=68.39  Aligned_cols=45  Identities=13%  Similarity=0.148  Sum_probs=38.3

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      +|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            2 SSGSSGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CCSCCSSCCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             CcccccCCCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            577888888888888888888888888888888888888888876

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=1.1e-15  Score=74.54  Aligned_cols=63  Identities=27%  Similarity=0.544  Sum_probs=57.1

Q ss_pred             CCCCCCCCCCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcC
Q psy7454           2 HMPRPNAYRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHT   65 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~   65 (103)
                      +...++.++++|.|+  .|++.|.....|..|+++|.++++|.|..|++.|...+.|..| ++.|+
T Consensus         9 ~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~Ht   73 (73)
T 1f2i_G            9 LLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH-IRTHT   73 (73)
T ss_dssp             TTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHHHH-HTTCC
T ss_pred             hhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHHHHHHH-HHhcC
Confidence            455678899999997  5999999999999999999999999999999999999999998 77663

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=9.2e-16  Score=67.88  Aligned_cols=44  Identities=16%  Similarity=0.118  Sum_probs=37.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56788888888888888888888888888888888888888776

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.61  E-value=1.1e-15  Score=68.16  Aligned_cols=44  Identities=18%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             cccCCCCCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.61  E-value=1.1e-15  Score=68.29  Aligned_cols=45  Identities=18%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            477888888888888888888888888888888888888888876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.1e-15  Score=68.28  Aligned_cols=44  Identities=25%  Similarity=0.377  Sum_probs=37.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.1e-15  Score=68.22  Aligned_cols=44  Identities=23%  Similarity=0.295  Sum_probs=36.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             cccCCCCCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888776

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.61  E-value=1.3e-15  Score=68.03  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=39.7

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|.+|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            2 SSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            478889988899999999999988999999999998899988876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=73.20  Aligned_cols=57  Identities=19%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             CCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC-CCCccccCcHHHHHHHHhhCCCC
Q psy7454          37 GEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR-YCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        37 ~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~-~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ++++|.|..|++.|. .+.|..| ++. .+++||.|. .||+.|...+.|..|+++|.++.
T Consensus         7 ~~~~~~C~~C~k~f~-~~~L~~H-~~~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~~   64 (66)
T 2eod_A            7 GKRTQPCTYCTKEFV-FDTIQSH-QYQ-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNTA   64 (66)
T ss_dssp             CCCEEECSSSCCEEE-HHHHHHH-HHH-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSSC
T ss_pred             CCCCeeccccCCccC-HHHHHHH-HHH-cCCcCccCCcccCcccccHHHHHHHHHhhcccC
Confidence            344555555555555 5555554 444 455555555 55555555555555555554443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=1.2e-15  Score=77.80  Aligned_cols=58  Identities=14%  Similarity=0.145  Sum_probs=35.8

Q ss_pred             eecCCCCccccCchHHHHHHHHh-cCCCCC--------eeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          41 FTCNMCEFKCRDNRTLKAHHINI-HTGQKP--------YPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        41 ~~c~~C~~~~~~~~~l~~h~~~~-h~~~~~--------~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|..|++.|.....|..| ++. |.++++        |.|..|++.|.....|..|+++|++++||.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H-~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   92 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTH-VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGP   92 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHH-HHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTCCCCS
T ss_pred             CcccccccccCCHHHHHHH-HHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCCCCCC
Confidence            4456666666666666655 444 555544        666666666666666666666666666664

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.4e-15  Score=67.93  Aligned_cols=45  Identities=20%  Similarity=0.209  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            2 SSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            467888888888888888888888888888888888888888776

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=68.04  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=37.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=68.15  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=37.6

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      -|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSSSSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ccccccCCCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367788888888888888888888888888888888888888776

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.60  E-value=1.4e-15  Score=67.91  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=36.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            3 SGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSSCTTSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CccCCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888766

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=68.14  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=37.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            67788888888888888888888888888888888888888776

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.7e-15  Score=67.56  Aligned_cols=44  Identities=25%  Similarity=0.266  Sum_probs=36.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCTTCCCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888776

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.5e-15  Score=67.83  Aligned_cols=44  Identities=20%  Similarity=0.183  Sum_probs=37.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.7e-15  Score=67.56  Aligned_cols=44  Identities=11%  Similarity=0.031  Sum_probs=36.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            3 SGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             CcccCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66778888888888888888888888888888888888888776

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.60  E-value=1.7e-15  Score=67.57  Aligned_cols=44  Identities=20%  Similarity=0.201  Sum_probs=37.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.6e-15  Score=67.71  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=34.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSCSSCCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            56777777788888888888888888888888888888887765

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.5e-15  Score=67.79  Aligned_cols=44  Identities=23%  Similarity=0.301  Sum_probs=36.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=68.07  Aligned_cols=44  Identities=18%  Similarity=0.240  Sum_probs=35.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888776

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=68.02  Aligned_cols=44  Identities=18%  Similarity=0.208  Sum_probs=34.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            66777777788888888888887888888888877788877766

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.4e-15  Score=67.90  Aligned_cols=44  Identities=20%  Similarity=0.209  Sum_probs=35.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888776

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.6e-15  Score=67.71  Aligned_cols=44  Identities=16%  Similarity=0.203  Sum_probs=36.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             CccccCCCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888776

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=67.71  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=36.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            3 SGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             CcCCCCCCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.2e-15  Score=68.08  Aligned_cols=44  Identities=20%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             CcccCCCCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            56777777778888888888777778888777777777777766

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.5e-15  Score=67.77  Aligned_cols=45  Identities=20%  Similarity=0.199  Sum_probs=38.6

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         2 ~H~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             CCCcCCCCCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            477888888888898898888888888888888888888888876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.60  E-value=1.7e-15  Score=67.59  Aligned_cols=44  Identities=18%  Similarity=0.227  Sum_probs=33.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             SSCTTSSCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             cccCCCCCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56777777778888888877777777777777777777777765

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.8e-15  Score=67.52  Aligned_cols=44  Identities=18%  Similarity=0.239  Sum_probs=37.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            3 SGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCCCCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             cccCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=1.8e-15  Score=67.48  Aligned_cols=44  Identities=16%  Similarity=0.129  Sum_probs=36.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ccccCCCCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.5e-15  Score=67.76  Aligned_cols=44  Identities=16%  Similarity=0.109  Sum_probs=35.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|+++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             CccccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            66778888888888888888888888888888888888888776

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.59  E-value=1.3e-15  Score=67.98  Aligned_cols=44  Identities=23%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            3 SGSSGTGEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             CCCccCCCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56777778888888888888888888888888888888887766

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.3e-15  Score=68.02  Aligned_cols=44  Identities=20%  Similarity=0.262  Sum_probs=37.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.3e-15  Score=68.03  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=35.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            56778888888888888888888888888888888888887766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.5e-15  Score=67.83  Aligned_cols=44  Identities=20%  Similarity=0.288  Sum_probs=35.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            66778888888888888888888888888888888888888766

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.59  E-value=2.3e-15  Score=67.21  Aligned_cols=44  Identities=23%  Similarity=0.164  Sum_probs=36.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.7e-15  Score=67.62  Aligned_cols=44  Identities=23%  Similarity=0.218  Sum_probs=35.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            67778888888888888888888888888888888888888776

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.7e-15  Score=67.62  Aligned_cols=44  Identities=18%  Similarity=0.210  Sum_probs=37.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            3 SGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.4e-15  Score=67.92  Aligned_cols=44  Identities=20%  Similarity=0.212  Sum_probs=34.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             cccccCCCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778778888888888888888888888888888888887766

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.9e-15  Score=67.43  Aligned_cols=44  Identities=16%  Similarity=0.132  Sum_probs=34.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56777777788888888888877778888878877777777766

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.5e-15  Score=67.78  Aligned_cols=44  Identities=25%  Similarity=0.311  Sum_probs=36.2

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCcCCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.6e-15  Score=67.68  Aligned_cols=44  Identities=18%  Similarity=0.193  Sum_probs=34.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|++++||.|+.|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56677777778888888888777778888777777777777765

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.4e-15  Score=67.90  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=33.9

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSCCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            56777777778888888888777777777777777777777765

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.59  E-value=1.8e-15  Score=67.54  Aligned_cols=44  Identities=20%  Similarity=0.200  Sum_probs=36.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=2.3e-15  Score=67.20  Aligned_cols=44  Identities=18%  Similarity=0.142  Sum_probs=36.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      ++++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888776

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=5.2e-15  Score=70.87  Aligned_cols=60  Identities=15%  Similarity=0.198  Sum_probs=54.6

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC-CCCccccCchHHHHHHHHhcCCCCC
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN-MCEFKCRDNRTLKAHHINIHTGQKP   69 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~-~C~~~~~~~~~l~~h~~~~h~~~~~   69 (103)
                      ..++++|.|+.|++.|. ...|..|+++ .+++||.|. .|++.|...+.|..| ++.|...++
T Consensus         5 ~C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~~~~~L~~H-~~~hc~~~~   65 (66)
T 2eod_A            5 SSGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTVAREDLPGH-LKDSCNTAL   65 (66)
T ss_dssp             CCCCCEEECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEEETTTHHHH-HHTTSSSCC
T ss_pred             cCCCCCeeccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccccHHHHHHH-HHhhcccCc
Confidence            46788999999999999 9999999999 999999999 999999999999998 888876554

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=3e-15  Score=66.78  Aligned_cols=44  Identities=23%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            56778888888888888888888888888888888888887754

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.57  E-value=2.4e-15  Score=75.74  Aligned_cols=61  Identities=25%  Similarity=0.526  Sum_probs=56.5

Q ss_pred             CCCCCCCCCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhc
Q psy7454           3 MPRPNAYRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIH   64 (103)
Q Consensus         3 ~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h   64 (103)
                      |+++|.++++|.|+  .|++.|.....|..|+++|.++++|.|+.|++.|...+.|..| ++.|
T Consensus        26 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~H   88 (89)
T 2wbs_A           26 HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALH-MKRH   88 (89)
T ss_dssp             HHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEESSHHHHHHH-GGGG
T ss_pred             HHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccCCHHHHHHH-HHhh
Confidence            56788999999997  6999999999999999999999999999999999999999998 7766

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=1.9e-15  Score=67.51  Aligned_cols=45  Identities=16%  Similarity=0.254  Sum_probs=36.5

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            2 SSGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367788888888888888888888888888888888888888776

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=3.7e-15  Score=66.70  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=36.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHh-hcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLG-MHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|++ +|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            6778888888888888888888888888888 8888888888776

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.56  E-value=6.8e-15  Score=74.16  Aligned_cols=56  Identities=34%  Similarity=0.664  Sum_probs=53.4

Q ss_pred             CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ++||.|..|++.|.....|..| ++.|.++++|.|..|++.|.....|..|+..+++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTH-IRTHTGEKPFACDICGRKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHH-HHHHHCCCCEECTTTCCEESSHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCccCCHHHHHHH-HHHcCCCCCccCCCCCCccCCHHHHHHHHHHhCC
Confidence            5789999999999999999998 8899999999999999999999999999999985

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=5e-15  Score=66.05  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            67788888888888888888888888888888888888888764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=7.8e-15  Score=74.78  Aligned_cols=62  Identities=23%  Similarity=0.303  Sum_probs=57.3

Q ss_pred             CceeeCCCCCcccCchhHHHHHhh-cCCCCC--------eecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGM-HLGEKP--------FTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~-h~~~~~--------~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      ..+.|+.|++.|.....|..|+++ |.++++        |.|..|++.|.....|..| ++.|.+++||.|.
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   94 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH-IRVHTGEKSGPSS   94 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHH-HHHHHTCCCCSSC
T ss_pred             CCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHH-HHhcCCCCCCCCC
Confidence            347799999999999999999998 988887        8999999999999999998 8999999999986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=4.2e-18  Score=83.07  Aligned_cols=68  Identities=21%  Similarity=0.337  Sum_probs=60.9

Q ss_pred             chhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCccc
Q psy7454          25 TGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        25 ~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      ...|..|+++|.++++|.|..|++.|.....|..        +++|.|..|++.|.....|..|+++|++++||..
T Consensus         3 ~~~l~~H~~~h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C   70 (73)
T 2ctu_A            3 SGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGP   70 (73)
T ss_dssp             CCSCCCCCCCCCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSC
T ss_pred             chhHHHHHHHhCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCC
Confidence            3467789999999999999999999999887643        7899999999999999999999999999999864

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=3.3e-15  Score=77.84  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=59.9

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCccc
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDVE  100 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~~  100 (103)
                      ++++|.++++|.|.+|++.|.....|..| ++.|  .++|.|..|++.|.....|..|+. |++++||..
T Consensus         7 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C   72 (107)
T 1wjp_A            7 GASPVENKEVYQCRLCNAKLSSLLEQGSH-ERLC--RNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTC   72 (107)
T ss_dssp             CCCCCCCCCCCBCTTTCCBCSSHHHHHHH-HHHH--HHSBCCTTTCCCBSSHHHHHHHHH-HCSTGGGEE
T ss_pred             cCcccCCCcCeECCCCCCccCCHHHHHHH-HHHC--CCCccCCCCCCccCCHHHHHHHHH-cCCCCCccC
Confidence            45778899999999999999999999998 7888  469999999999999999999995 999999854

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.54  E-value=8.7e-15  Score=63.98  Aligned_cols=42  Identities=14%  Similarity=0.149  Sum_probs=37.5

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      ||+++|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         1 ~H~~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A            1 GSSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             CCCSCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             CCCccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            678889999999999999999999999999999999888876

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.54  E-value=2.9e-15  Score=76.97  Aligned_cols=63  Identities=25%  Similarity=0.543  Sum_probs=57.0

Q ss_pred             CCCCCCCCCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCC
Q psy7454           3 MPRPNAYRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG   66 (103)
Q Consensus         3 ~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~   66 (103)
                      |+++|.++++|.|+  .|++.|.....|..|+++|.++++|.|.+|++.|.....|..| ++.|.+
T Consensus        36 H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H-~~~H~~  100 (100)
T 2ebt_A           36 HLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALH-MKRHQN  100 (100)
T ss_dssp             HHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCSSHHHHHHH-HHHHCC
T ss_pred             HHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccCCHHHHHHH-HHHhCC
Confidence            44567888899996  6999999999999999999999999999999999999999998 888753

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.53  E-value=1.3e-14  Score=63.39  Aligned_cols=42  Identities=17%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A            1 GSSGSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             CCSSSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             CCCCCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            567788888888888888888888888888888888888774

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.53  E-value=1.7e-14  Score=66.47  Aligned_cols=47  Identities=17%  Similarity=0.383  Sum_probs=30.9

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHh-hcCCCCCeecCCCCccccC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLG-MHLGEKPFTCNMCEFKCRD   52 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~~~~~c~~C~~~~~~   52 (103)
                      .|.++++|.|+.|++.|.....|..|++ +|.++++|.|.+|++.|..
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            4556666777777777766666666665 6666666666666666643

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.53  E-value=1.2e-14  Score=64.78  Aligned_cols=43  Identities=19%  Similarity=0.246  Sum_probs=34.2

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888888888888888888888888888888877764

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.3e-14  Score=64.73  Aligned_cols=44  Identities=20%  Similarity=0.245  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A            2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCCCSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCccccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            47788888888888888888888888888888888888888764

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.6e-14  Score=64.38  Aligned_cols=44  Identities=20%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A            2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCSSCCCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             CcccCcCCCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36778888888888888888888888888888888888888764

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.5e-14  Score=64.43  Aligned_cols=43  Identities=26%  Similarity=0.373  Sum_probs=35.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            6778888888888888888888888888888888888888764

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.7e-14  Score=64.27  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      .+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 ~~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSTTCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            35677788888888888888888888888888888888888776

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.9e-14  Score=64.06  Aligned_cols=43  Identities=23%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            6778888888888888888888888888888888888888864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=2e-14  Score=64.05  Aligned_cols=44  Identities=20%  Similarity=0.274  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A            2 SSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCSSCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCcccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36778888888888888888888888888888888888888763

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.8e-14  Score=64.20  Aligned_cols=43  Identities=21%  Similarity=0.276  Sum_probs=33.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677777778888888888888888888888888888877764

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.8e-14  Score=64.18  Aligned_cols=43  Identities=21%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            5677888888888888888888888888888888888887764

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.8e-14  Score=64.19  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=35.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6777888888888888888888888888888888888888764

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.52  E-value=1.6e-14  Score=63.06  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=33.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A            1 GSSGSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             CCSSSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             CCcCcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            567788888888888888888888888888888888887763

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.2e-14  Score=63.58  Aligned_cols=42  Identities=17%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      +|+++|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A            1 GSSGSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             CCCcccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            578888888899999999999988889999888888888876

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.1e-14  Score=63.94  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=34.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6677888888888888888888888888888888888887764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.4e-14  Score=63.71  Aligned_cols=43  Identities=23%  Similarity=0.297  Sum_probs=35.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|+.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6778888888888888888888888888888888888888763

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2e-14  Score=64.00  Aligned_cols=43  Identities=19%  Similarity=0.262  Sum_probs=34.2

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            5677888888888888888888888888888888888887764

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.2e-14  Score=63.92  Aligned_cols=43  Identities=19%  Similarity=0.265  Sum_probs=35.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6778888888888888888888888888888888888888764

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=64.20  Aligned_cols=43  Identities=26%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6777888888888888888888888888888888888888764

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.2e-14  Score=63.94  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=35.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|++++||.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6778888888888888888888888888888888888888764

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=63.55  Aligned_cols=43  Identities=14%  Similarity=0.193  Sum_probs=36.2

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A            2 SSGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             CSCCSSSSCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             CCccccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            4778888888888888888888888888888888888888774

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3e-14  Score=62.86  Aligned_cols=42  Identities=12%  Similarity=0.122  Sum_probs=33.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            677788888888888888888888888888888888887764

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=64.25  Aligned_cols=44  Identities=18%  Similarity=0.261  Sum_probs=36.3

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         2 ~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A            2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             CCSSSCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCCCCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            36788888888888888888888888888888888888888764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=2.2e-14  Score=63.92  Aligned_cols=42  Identities=19%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence            667787777888888888888888888888888888877775

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=1.8e-14  Score=64.19  Aligned_cols=43  Identities=26%  Similarity=0.383  Sum_probs=35.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            6777888888888888888888888888888888888887764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.7e-14  Score=64.28  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|++
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            6677777778888888888877777888877777777777764

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.2e-14  Score=63.92  Aligned_cols=43  Identities=16%  Similarity=0.175  Sum_probs=35.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778888888888888888888888888888888888888763

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.3e-14  Score=64.67  Aligned_cols=45  Identities=29%  Similarity=0.516  Sum_probs=35.6

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|+++++|.|.+|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2eml_A            2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH-QRIHSGKKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECSSSCCEESSHHHHHHH-HGGGSSCCCSCSSCC
T ss_pred             CccCCcCCCCCeeCCCcCCccCCHHHHHHH-HHHhcCCCCCCCCCC
Confidence            366777888888888888888888888887 778888888888766

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=63.34  Aligned_cols=42  Identities=12%  Similarity=0.107  Sum_probs=35.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCC-CCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLG-EKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~-~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+ +++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence            67788888888888888888888888888888888 8888875

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.7e-14  Score=63.09  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      +|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|
T Consensus         1 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A            1 GSSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCCSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             CCCcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            478888888899999999999988889999888888888776

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.4e-14  Score=63.79  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6777888888888888888888888888888888888887763

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.3e-14  Score=63.88  Aligned_cols=43  Identities=23%  Similarity=0.313  Sum_probs=34.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            6777888888888888888888888888888888888877764

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=2.8e-14  Score=62.92  Aligned_cols=42  Identities=19%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A            3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             CSSCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             CccCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            567777777888888888888888888888888777777764

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=1.3e-14  Score=64.64  Aligned_cols=44  Identities=32%  Similarity=0.438  Sum_probs=34.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2emm_A            3 SGSSGTGERPHKCNECGKSFIQSAHLIQH-QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSCSSCCCSEECSSSCCEESSHHHHHHH-HHHHSCCCTTSSSCC
T ss_pred             CcCCcCCCCCeeCCCCChhhCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            66777778888888888888888888887 777888888887766

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=4.5e-14  Score=62.90  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=37.4

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         2 ~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A            2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCCcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36788888888999999999988888989988888888888863

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.49  E-value=1.5e-14  Score=64.47  Aligned_cols=45  Identities=33%  Similarity=0.447  Sum_probs=35.6

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~c   46 (46)
T 2ema_A            2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQH-QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCSSCTTSCCEECSSSCCEESSHHHHHHH-HTGGGCCCCCSSSCC
T ss_pred             CCccCCCCCcCcCCCCCcchhCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            366777888888888888888888888887 777888888888765

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.8e-14  Score=63.59  Aligned_cols=44  Identities=30%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.++++|.|..|
T Consensus         1 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   44 (44)
T 2emx_A            1 GSSGSSGEKPFGCSCCEKAFSSKSYLLVH-QQTHAEEKPSGPSSG   44 (44)
T ss_dssp             CCCCCSSCCCEECSSSSCEESSHHHHHHH-HHHHTSSCSCSCCCC
T ss_pred             CCCCcCCCcCccCCCCCcccCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            45667777777777777777777777776 677777777777765

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.8e-14  Score=64.15  Aligned_cols=45  Identities=31%  Similarity=0.522  Sum_probs=35.3

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A            2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH-QQIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSSCCCSEECSSSCCEESSHHHHHHH-HHTTSSCCSCCSCCC
T ss_pred             CCCCCCCCCcCcCCCCCCcccCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            366777788888888888888888888887 777888888888765

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.49  E-value=9.6e-15  Score=67.31  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             ccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          48 FKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        48 ~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|...+.|..| ++.|.++++|.|..||+.|...+.|..|+++|++++||.
T Consensus         4 k~~~~~~~l~~h-~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~   54 (54)
T 1yui_A            4 KRAKHPPGTEKP-RSRSQSEQPATCPICYAVIRQSRNLRRHLELRHFAKPGV   54 (54)
T ss_dssp             CCCSCSSCCCCC-HHHHTSSCCEECTTTCCEESSHHHHHHHHHHHTTTSCCC
T ss_pred             cccCCCcchhhH-HHhcCCCCCccCCCCCcccCCHHHHHHHHHHhccCCCCC
Confidence            455666666776 777888888888888888888888888888888888773

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.3e-14  Score=62.61  Aligned_cols=41  Identities=20%  Similarity=0.310  Sum_probs=35.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+++||.|
T Consensus         2 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A            2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCCCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             CccccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            67788888888999999888888888888888888888876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.2e-14  Score=64.82  Aligned_cols=44  Identities=18%  Similarity=0.144  Sum_probs=34.8

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      -+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.+|
T Consensus         3 ~~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            35677788888888888888888888888888888888888766

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.49  E-value=3.1e-14  Score=63.14  Aligned_cols=43  Identities=14%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE   47 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~   47 (103)
                      ..|+++++|.|+.|++.|.....|..|+++|.++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            3567777777877877777777777777777777777777775

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=3e-14  Score=63.46  Aligned_cols=42  Identities=17%  Similarity=0.175  Sum_probs=33.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            677788888888888888888888888888888888887775

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.5e-14  Score=64.48  Aligned_cols=45  Identities=38%  Similarity=0.530  Sum_probs=35.7

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ene_A            2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRH-QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSCCCSSSEECSSSCCEESSHHHHHHH-HTTTCCCCCCSCCCC
T ss_pred             CcccCCCCCCCeECCCCCchhCChHHHHHH-HhhcCCCCCCCCCCC
Confidence            366777888888888888888888888887 778888888888776

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2e-14  Score=64.02  Aligned_cols=45  Identities=31%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A            2 SSGSSGTGEKPYICAECGKAFTIRSNLIKH-QKIHTKQKPSGPSSG   46 (46)
T ss_dssp             CSSCTTSSCCSEECSSSCCEESSHHHHHHH-HHHTSCCCCSSCSCC
T ss_pred             CcccCCCCCcCeECCCCChhhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            356677777778888888888877777777 677777777777765

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2e-14  Score=63.98  Aligned_cols=45  Identities=31%  Similarity=0.436  Sum_probs=35.8

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|+.|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2eme_A            2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRH-QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCSEECSSSCCEESSHHHHHHH-HGGGCCCSCCSSCCC
T ss_pred             CCCCCCCCCCCeECCCCChhhCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            366777888888888888888888888887 778888888888776

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.3e-14  Score=64.66  Aligned_cols=44  Identities=34%  Similarity=0.498  Sum_probs=34.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A            3 SGSSGTGKKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCSSCBCTTTCCBCSSHHHHHHH-GGGTSCCCCCSCCCC
T ss_pred             CCcCCCCCcCeECCCCCCeeCCHHHHHHH-hhhcCCCCCCCCCCC
Confidence            56777778888888888888888888887 777888888887766

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=3.9e-14  Score=62.49  Aligned_cols=42  Identities=14%  Similarity=0.197  Sum_probs=34.7

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A            3 SGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             CCSCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             cccccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            677888888888888888888888888888888888887774

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2.7e-14  Score=62.95  Aligned_cols=42  Identities=19%  Similarity=0.187  Sum_probs=33.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A            3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             SCCCSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             CCcCCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            567788888888888888888888888888888888877764

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.49  E-value=1.4e-14  Score=64.56  Aligned_cols=45  Identities=29%  Similarity=0.451  Sum_probs=34.0

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2emk_A            2 SSGSSGTGEKPYECKECGKAFSQTTHLIQH-QRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCSCBCSSSCCBCSCHHHHHHH-HHHHSSCCCSSCCCC
T ss_pred             CCCCccCCCCceECCCCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            356677777778888888888877777777 677777777777765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.5e-14  Score=64.38  Aligned_cols=45  Identities=24%  Similarity=0.348  Sum_probs=36.5

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A            2 SSGSSGTGEKLYNCKECGKSFSRAPCLLKH-ERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCCCCCBTTTTBCCSCHHHHHHH-HHHCCSSSCCCCCCC
T ss_pred             CCcccCCCCCCeECCCCCCccCchHHHHHH-HHhcCCCCCCCCCCC
Confidence            366778888888888888888888888887 778888888888776

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.49  E-value=1.4e-14  Score=64.50  Aligned_cols=45  Identities=27%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2el4_A            2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVH-QRSHTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSSCEESSHHHHHHH-GGGSSSCCCSCCTTC
T ss_pred             ccccCCCCCCceECCCCCchhCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            356777777888888888888888888877 777888888877765

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.49  E-value=2.3e-14  Score=63.85  Aligned_cols=44  Identities=32%  Similarity=0.471  Sum_probs=35.3

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ely_A            3 SGSSGTGEKPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSTTHHHHH-HHHHSCCSSCSCCCC
T ss_pred             CCCCCCCCCCcccCccCcccCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            66777888888888888888888888887 777888888888766

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.6e-14  Score=64.37  Aligned_cols=44  Identities=25%  Similarity=0.399  Sum_probs=34.3

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2emy_A            3 SGSSGTGENPYECHECGKAFSRKYQLISH-QRTHAGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCEECSSSCCEESSHHHHHHH-HHHHTTSCCSCSSCC
T ss_pred             CCCCCCCCcCcCCCCCCcccCcHHHHHHH-HHHcCCCCCCCCCCC
Confidence            56777777888888888888888888887 777888888877765

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=2e-14  Score=63.98  Aligned_cols=45  Identities=22%  Similarity=0.184  Sum_probs=35.6

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|.++++|.|..|++.|...+.|..| ++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2epw_A            2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMH-QRTHVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSSHHHHHH-HHHCCSCCCSCCCCC
T ss_pred             cCcccCCCCCCeeCCCCCCccCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            366777888888888888888888888887 777888888888766

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.8e-14  Score=64.19  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|.++++|.|..|++.|...+.|..| ++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2eov_A            2 SSGSSGTGEKPYKCSDCGKSFTWKSRLRIH-QKCHTGERHSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSCBCSSSCCBCSSHHHHHHH-HHHHSCCSSCCSCCC
T ss_pred             CCCCCCCCCCCccCCccChhhCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            366777778888888888888888888887 777888888887766

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.49  E-value=1.6e-14  Score=64.34  Aligned_cols=44  Identities=36%  Similarity=0.502  Sum_probs=35.5

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A            3 SGSSGTGEKPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCTTCCCCEECTTTCCEESSHHHHHHH-HTTTCCCCCSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            56777888888888888888888888887 778888888888776

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.3e-14  Score=64.67  Aligned_cols=45  Identities=31%  Similarity=0.510  Sum_probs=35.1

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~c   46 (46)
T 2emh_A            2 SSGSSGTGERPYICTVCGKAFTDRSNLIKH-QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCSCCCSEECTTTCCEESSHHHHHHH-HHHHHCSSCSSSCCC
T ss_pred             CCCCCCCCCCCcCCCCCCchhCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            366777788888888888888888888887 677888888888765

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.5e-14  Score=64.42  Aligned_cols=44  Identities=36%  Similarity=0.497  Sum_probs=35.0

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLANH-QRIHTGVKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSSEETTTTEECSSHHHHHHH-HGGGSCCCSCSSCCC
T ss_pred             CCCCCCCCCCeECCCcChhhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            66777788888888888888888888887 778888888888766

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2e-14  Score=64.05  Aligned_cols=45  Identities=29%  Similarity=0.447  Sum_probs=34.8

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A            2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEH-RRIHTGYRPSGPSSG   46 (46)
T ss_dssp             CCCCCSCCCCSEECSSSCCEESSHHHHHHH-HHHHTCCCSSCSSCC
T ss_pred             CCccccCCCcCeECCCCCCeeCChHHHHHH-HHHcCCCCCCCCCCC
Confidence            356777778888888888888888888887 777888888887766

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.6e-14  Score=64.35  Aligned_cols=44  Identities=36%  Similarity=0.520  Sum_probs=33.4

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A            3 SGSSGSGEKPYKCNECGKVFTQNSHLTNH-WRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSSCSEECSSSCCEESSHHHHHHH-HHHHSSSSCSSCCCC
T ss_pred             CcccCCCCCCEeCCcCCCccCCHHHHHHH-HHHHCCCCCCCCCCC
Confidence            56677777777777777777777777777 677777777777765

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.5e-14  Score=64.52  Aligned_cols=44  Identities=32%  Similarity=0.414  Sum_probs=33.1

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~c   46 (46)
T 2emf_A            3 SGSSGTGGKHFECTECGKAFTRKSTLSMH-QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSSSCCEECSSSCCEESCHHHHHHH-GGGTSCSSCSCCCCC
T ss_pred             cccccCCCCCeECCCCCchhCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            56677777777777777777777777776 677777777777765

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-14  Score=64.34  Aligned_cols=45  Identities=24%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|.++++|.|.+|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2em5_A            2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQH-QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSCSEECSSSCCEESSHHHHHHH-HTTTSCSCCSSCCCC
T ss_pred             CCcCCCCCCCCeECCcCCCccCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            366777788888888888888888888887 777888888888766

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.4e-14  Score=64.57  Aligned_cols=45  Identities=22%  Similarity=0.311  Sum_probs=34.9

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|.++++|.|+.|++.|...+.|..| ++.|.++++|.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A            2 SSGSSGSGERPYGCNECGKNFGRHSHLIEH-LKRHFREKSSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCCCEECSSSCCEESSHHHHHHH-HHHHHSTTSSCCSCC
T ss_pred             CCCCCCCCCCCEEccccCcccCCHHHHHHH-HHHHcCCCCCCCCCC
Confidence            366777778888888888888888888887 677878888887765

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.48  E-value=1.8e-14  Score=77.29  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=53.8

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCC
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ   67 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~   67 (103)
                      |.++++|.|+.|++.|.....|..|+++|  ++||.|..|++.|...+.|..| ++.|.+.
T Consensus        69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~~~~~C~~C~k~f~~~~~l~~H-~~~h~~~  126 (129)
T 2wbt_A           69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH-VCKKHNI  126 (129)
T ss_dssp             HHHHCSEECTTTCCEESSHHHHHHHHHHT--CCCCBCTTTCCBCSSHHHHHHH-HHHTTCC
T ss_pred             hCCCCCeECCCCCcccCCHhHHHHHHHHC--CCCCCCCCCCcccCCHHHHHHH-HHHHCCc
Confidence            56778999999999999999999999999  8999999999999999999998 8888764

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.5e-14  Score=64.45  Aligned_cols=45  Identities=31%  Similarity=0.411  Sum_probs=35.1

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2emp_A            2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTH-QVIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSSCCCSEECSSSCCEESCHHHHHHH-HHHHHCCSCCSCCCC
T ss_pred             CcccccCCCcCeECCCCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            366777788888888888888888888887 777888888887766

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.48  E-value=1.5e-14  Score=64.50  Aligned_cols=44  Identities=27%  Similarity=0.513  Sum_probs=33.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2em0_A            3 SGSSGMGEKTWKCRECDMCFSQASSLRLH-QNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCCCCSSSCCCCSSHHHHHHH-GGGGSSSSCSCSSCC
T ss_pred             CcCccCCCcCeECCCCCcccCCHHHHHHH-HHHcCCCCCcCCCCC
Confidence            56677777778888888888877777777 677777777777765

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.9e-14  Score=64.11  Aligned_cols=45  Identities=29%  Similarity=0.448  Sum_probs=35.0

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|.+|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A            2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRH-SMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSSSCSCCCSSSCCCCSSHHHHHHH-HHHTTCCCSSSCCCC
T ss_pred             CCCCCCCCCCCcCCCcCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            356777778888888888888888888887 777888888887766

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=4.4e-14  Score=62.86  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=35.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            6778888888888888888888888888888888888888763

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=1.8e-14  Score=64.19  Aligned_cols=45  Identities=31%  Similarity=0.391  Sum_probs=35.1

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2eop_A            2 SSGSSGTGEKPHECRECGKSFSFNSQLIVH-QRIHTGENPSGPSSG   46 (46)
T ss_dssp             CCCCSCCCCCSCBCTTTCCBCSSHHHHHHH-HTTTTTSCCSCCCCC
T ss_pred             CCccccCCCCCeeCCCCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            366777788888888888888888888887 777888888887766

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.48  E-value=1.4e-14  Score=68.63  Aligned_cols=50  Identities=14%  Similarity=0.301  Sum_probs=32.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchH
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRT   55 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~   55 (103)
                      |+++|.++++|.|+.||+.|.....|.   ++|.++++|.|..|++.|.....
T Consensus         5 h~~~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~k~~~C~~C~k~f~~~~~   54 (62)
T 1vd4_A            5 DERDSTNRASFKCPVCSSTFTDLEANQ---LFDPMTGTFRCTFCHTEVEEDES   54 (62)
T ss_dssp             CSSSCCSSSEEECSSSCCEEEHHHHHH---HEETTTTEEBCSSSCCBCEECTT
T ss_pred             HHHHcCCCCCccCCCCCchhccHHHhH---hhcCCCCCEECCCCCCccccCcc
Confidence            556667777777777777776655554   56666677777777766655443

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2e-14  Score=64.02  Aligned_cols=45  Identities=24%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|.++++|.|+.|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2en8_A            2 SSGSSGSGEKSHTCDECGKNFCYISALRIH-QRVHMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCCCCCCSSEECTTTCCEESSHHHHHHH-HTTTCCSCSSCCSCC
T ss_pred             CccccCCCCCCeECCCcCcccCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            366777788888888888888888888887 777888888887766

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.8e-14  Score=63.53  Aligned_cols=44  Identities=36%  Similarity=0.480  Sum_probs=35.3

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|.....|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2epz_A            3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQH-RRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCCCCSBCCTTTCCCBSSHHHHHHH-HTTTTTCCCCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCceeCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            56777888888888888888888888887 778888888888766

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2e-14  Score=64.07  Aligned_cols=44  Identities=32%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2em7_A            3 SGSSGTGEKPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSCCCSEECSSSCCEESCHHHHHHH-GGGGTTCCCSSTTCC
T ss_pred             CCCCCCCCcCccCCCccchhCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            56677777778888888888777777777 677777777777765

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.48  E-value=2.7e-14  Score=63.55  Aligned_cols=44  Identities=30%  Similarity=0.446  Sum_probs=34.2

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2em9_A            3 SGSSGTGEKPYNCKECGKSFRWASCLLKH-QRVHSGEKPSGPSSG   46 (46)
T ss_dssp             SCCSCCCCCSEECSSSCCEESSHHHHHHH-GGGGTSCCCCSTTCC
T ss_pred             CCCCCCCCcCeECCccccccCChHHHHHH-HHHhCCCCCCCCCCC
Confidence            56777777888888888888888888777 777877778877766

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.48  E-value=2.1e-14  Score=64.01  Aligned_cols=44  Identities=27%  Similarity=0.437  Sum_probs=35.0

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A            3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH-MRTHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCSSCCCSCBCSSSCCBCSCHHHHHHH-HTTTCCSCSSCCCCC
T ss_pred             CCcCcCCCCCcCCCccChhhCChHHHHHH-HHHhCCCCCCCCCCC
Confidence            56777888888888888888888888887 777888888888766

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.47  E-value=6.5e-14  Score=62.94  Aligned_cols=43  Identities=23%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCc
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEF   48 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~   48 (103)
                      .+.++++|.|+.|++.|.....|..|+++|.++++|.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            4566777888888888888888888888888888888888764

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=3.5e-14  Score=63.24  Aligned_cols=44  Identities=23%  Similarity=0.149  Sum_probs=34.1

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2yso_A            3 SGSSGSREKSHQCRECGEIFFQYVSLIEH-QVLHMGQKNSGPSSG   46 (46)
T ss_dssp             CSCCSSCCCCEECTTTCCEESSHHHHHHH-HHHHSCCSCCCTTCC
T ss_pred             cccccCCCCCEEccccChhhCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            56677777888888888888888888877 777877788877765

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.8e-14  Score=64.13  Aligned_cols=45  Identities=33%  Similarity=0.494  Sum_probs=35.8

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A            2 SSGSSGTGEKPYKCNECGKAFSQTSKLARH-QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCSSCCTTCCTTTCCCCSSHHHHHHH-HTTTTTCSCCCSCCC
T ss_pred             CCCcCCCCCcCcCCCCCCCccCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            366777888888888888888888888887 778888888888776

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=3.8e-14  Score=63.11  Aligned_cols=44  Identities=30%  Similarity=0.400  Sum_probs=35.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2enc_A            3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH-QRSHSGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCCCCCSEECSSSCCEESSHHHHHHH-HHHSCCSSCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCcCCChHHHHHH-HHHhCCCCCCCCCCC
Confidence            56777888888888888888888888887 778888888888776

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=66.92  Aligned_cols=55  Identities=27%  Similarity=0.612  Sum_probs=33.7

Q ss_pred             CCCCCeecCC--CCccccCchHHHHHHHHhcCCCCCeeCCC--CCccccCcHHHHHHHHh
Q psy7454          36 LGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYKARETQALKVHTKR   91 (103)
Q Consensus        36 ~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~~~f~~~~~l~~H~~~   91 (103)
                      ...++|.|..  |++.|.....|..| ++.|.++++|.|.+  |++.|.....|..|+++
T Consensus        13 ~~~~~~~C~~~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~   71 (72)
T 2epa_A           13 SRIRSHICSHPGCGKTYFKSSHLKAH-TRTHTGEKPFSCSWKGCERRFARSDELSRHRRT   71 (72)
T ss_dssp             CCCCCEECSSTTTCCEESSHHHHHHH-HHHHSSSCSEECCCTTCCCEESSHHHHHHHTTT
T ss_pred             cccCceeCCCCCCccccCCHHHHHHH-HHhcCCCCCccCCCCCCCcccCCHHHHHhHhhc
Confidence            3455566655  66666666666665 55666666666643  66666666666666554

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.47  E-value=3.3e-14  Score=63.35  Aligned_cols=44  Identities=25%  Similarity=0.373  Sum_probs=34.4

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|.+|++.|.....|..| ++.|.+++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2el6_A            3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH-QRMHTREKPSGPSSG   46 (46)
T ss_dssp             SCCSSCCCCSEECSSSSCEESSHHHHHHH-HGGGCCSSCCSCCCC
T ss_pred             CCCCCCCCCCeECCCCCcccCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            56677778888888888888888888887 777888888887766

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.3e-14  Score=63.83  Aligned_cols=45  Identities=33%  Similarity=0.541  Sum_probs=33.7

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      .|+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2en1_A            2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSH-QRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CSTTCCCCCCSEEETTTTEEESSHHHHHHH-GGGGSCCCCSCCCCC
T ss_pred             CcccCCCCCCCeeCCCCCcccCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            356677777777777777777777777776 677777777777765

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.7e-14  Score=63.60  Aligned_cols=44  Identities=23%  Similarity=0.294  Sum_probs=34.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2elz_A            3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH-QRVHMGEKTSGPSSG   46 (46)
T ss_dssp             CCSCCCCCSSCBCSSSCCBCSSHHHHHHH-GGGGGSCCCCCSCCC
T ss_pred             CCCCCCCCCCeeCcccCchhCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            56777778888888888888888888887 777888888887766

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=67.02  Aligned_cols=58  Identities=28%  Similarity=0.557  Sum_probs=51.6

Q ss_pred             CCCCCCceeeCC--CCCcccCchhHHHHHhhcCCCCCeecCC--CCccccCchHHHHHHHHhc
Q psy7454           6 PNAYRYKYVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCNM--CEFKCRDNRTLKAHHINIH   64 (103)
Q Consensus         6 ~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h   64 (103)
                      .....++|.|+.  |++.|.....|..|+++|.++++|.|.+  |++.|.....|..| ++.|
T Consensus        11 ~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~~~~~l~~H-~~~H   72 (72)
T 2epa_A           11 DSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH-RRTH   72 (72)
T ss_dssp             CCCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEESSHHHHHHH-TTTC
T ss_pred             CccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccCCHHHHHhH-hhcC
Confidence            445677899998  9999999999999999999999999975  99999999999998 6543

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=2.9e-14  Score=63.50  Aligned_cols=44  Identities=34%  Similarity=0.495  Sum_probs=32.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A            3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH-QKIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSSCCCSEECSSSCCEESSHHHHHHH-HTTTTTSCCCCTTCC
T ss_pred             CCCCCCCCCCeECCCCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            56677777777777777777777777776 677777777777654

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.6e-14  Score=64.35  Aligned_cols=44  Identities=34%  Similarity=0.488  Sum_probs=33.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RRVHTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCCCCCSSEECSSSCCEESSSHHHHHH-THHHHSCCCSCSCCC
T ss_pred             cCcCCCCCCCeECCcCCchhCCHHHHHHH-HHhcCCCCCCCCCCC
Confidence            56677777788888888888888888777 677777777777765

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.6e-14  Score=64.36  Aligned_cols=45  Identities=31%  Similarity=0.475  Sum_probs=35.5

Q ss_pred             HHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        30 ~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +|+++|+++++|.|.+|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A            2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQH-QRVHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSCCSEECTTTCCEESSSHHHHTT-GGGGSSCCSSCSCCC
T ss_pred             CCCCCCCCCCCeECCCCCcccCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            366777788888888888888888888887 778888888888766

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=5e-14  Score=62.15  Aligned_cols=43  Identities=14%  Similarity=0.145  Sum_probs=35.7

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         2 ~H~~~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A            2 SSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             CCCcCCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3677888888888888888888888888888888888888773

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.2e-14  Score=63.87  Aligned_cols=44  Identities=34%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|.+|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 h~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2en6_A            3 SGSSGSGEKPYGCNECGKTFSQKSILSAH-QRTHTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCCSSCCEEETTTTEEESSHHHHHHH-HHHHSSCCCSSSCCC
T ss_pred             CCCccCCCcCeECCCCCcccCchHHHHHH-HHHcCCCCCCCCCCC
Confidence            56677777888888888888888888777 677777778777765

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3e-14  Score=63.46  Aligned_cols=42  Identities=17%  Similarity=0.163  Sum_probs=33.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            667788888888888888888888888888888777777775

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3e-14  Score=63.47  Aligned_cols=44  Identities=27%  Similarity=0.469  Sum_probs=35.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.+|
T Consensus         3 H~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A            3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMH-QKVHTGERPSGPSSG   46 (46)
T ss_dssp             CCCCCSSCCSEEETTTTEEESCHHHHHHH-HTTSCSCCSSCCSCC
T ss_pred             CCcCCCCCCCeECCCCCCccCCHHHHHHH-HHhhCCCCCCCCCCC
Confidence            66778888888888888888888888887 778888888888776

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.46  E-value=1.1e-13  Score=63.70  Aligned_cols=47  Identities=23%  Similarity=0.449  Sum_probs=43.2

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHH-hcCCCCCeeCCCCCccccC
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHIN-IHTGQKPYPCRYCDYKARE   81 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~-~h~~~~~~~c~~C~~~f~~   81 (103)
                      .+.++++|.|.+|++.|.....|..| ++ .|.++++|.|.+|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H-~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGH-IKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHH-HHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHH-HHHhcCCCCCccCCCCCCCCCC
Confidence            46788999999999999999999998 65 8999999999999999975

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.4e-13  Score=60.67  Aligned_cols=42  Identities=14%  Similarity=0.070  Sum_probs=34.4

Q ss_pred             CCCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           2 HMPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         2 ~~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      .|+++|.++++|.|+.|++.|.....|..|+++|++++||.|
T Consensus         2 ~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A            2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             CCCCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             CCCcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            467788888888888888888888888888888888888765

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=3.5e-14  Score=63.45  Aligned_cols=44  Identities=30%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHH-hcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHIN-IHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~-~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++ .|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A            3 SGSSGTGKKPYECIECGKAFIQNTSLIRH-WRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCCCCCSBCCSSSCCCBSSHHHHHHH-HTTTTTTSCSSSCCCC
T ss_pred             cccccCCCCCEECCccCchhCChHHHHHH-hHhhcCCCCCCCCCCC
Confidence            56777778888888888888888888887 66 7888888887765

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=4.6e-14  Score=62.83  Aligned_cols=42  Identities=14%  Similarity=0.168  Sum_probs=33.3

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|+
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            567788888888888888888888888888888777877775

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=3.7e-14  Score=63.19  Aligned_cols=44  Identities=32%  Similarity=0.480  Sum_probs=34.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A            3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH-QRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SCCCCSSCCSSSBTTTTBCCSSHHHHHHH-HHHHHSCCCCCCCCC
T ss_pred             CCcCCCCCCCcCCCCCCchhCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            56677778888888888888888888887 777888888888766

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=8.6e-14  Score=61.39  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=31.5

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.++++|.|.
T Consensus         3 h~~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A            3 SGSSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CSCSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            566777777777777777777777777777777777777763

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=5.2e-14  Score=62.68  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|.....|..| ++.|.++++|.|.+|
T Consensus         3 h~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~~C   46 (46)
T 2em8_A            3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH-QRVHTGEKLSGPSSG   46 (46)
T ss_dssp             CCCCCCSCCSEECSSSCCEESSHHHHHHH-HHHHHCCCCCCSCCC
T ss_pred             CCCCCCCCCCeECcccCchhCCHHHHHHH-HHHHcCCCCCCCCCC
Confidence            56677788888888888888888888887 777888888888766

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.4e-13  Score=61.01  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=34.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      +.++|.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A            3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             CCCCCCSCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             CCCCCCCCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            3567788888888888888888888888888888888888763

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.8e-13  Score=61.34  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=34.9

Q ss_pred             CCCCCCCCCceeeC--CCCCcccCchhHHHHHhhcCCCCCeecCCC
Q psy7454           3 MPRPNAYRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPFTCNMC   46 (103)
Q Consensus         3 ~~~~h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C   46 (103)
                      +.++|.++++|.|.  .|++.|.....|..|+++|.++++|.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            46677888888887  788888888888888888888888888766

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=7.8e-14  Score=62.09  Aligned_cols=44  Identities=39%  Similarity=0.583  Sum_probs=30.1

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~~   46 (46)
T 2em2_A            3 SGSSGSGEKPFKCKECGKAFRQNIHLASH-LRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCCCCCSEECSSSCCEESSHHHHHHH-HHHHCCCCSSCSSCC
T ss_pred             CCCCCCCCCCEECCcCCchhCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            55666677777777777777777777776 666777777766643

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=1.8e-13  Score=60.92  Aligned_cols=43  Identities=21%  Similarity=0.264  Sum_probs=33.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNM   45 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~   45 (103)
                      .+++|.++++|.|+.|++.|.....|..|+++|.++++|.|++
T Consensus         3 ~~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A            3 SGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            4567777788888888888888888888888888888877753

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.43  E-value=1.2e-14  Score=68.91  Aligned_cols=53  Identities=13%  Similarity=0.340  Sum_probs=45.9

Q ss_pred             HHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHH
Q psy7454          29 KRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQAL   85 (103)
Q Consensus        29 ~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l   85 (103)
                      ..|+++|.+++||.|+.|++.|.....|.    ..|.+++||.|..||+.|....++
T Consensus         3 ~~h~~~H~~~k~~~C~~C~k~F~~~~~l~----~~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A            3 ETDERDSTNRASFKCPVCSSTFTDLEANQ----LFDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             CCCSSSCCSSSEEECSSSCCEEEHHHHHH----HEETTTTEEBCSSSCCBCEECTTC
T ss_pred             hhHHHHcCCCCCccCCCCCchhccHHHhH----hhcCCCCCEECCCCCCccccCccc
Confidence            45788999999999999999999877663    679999999999999999876543

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.42  E-value=2.9e-13  Score=67.38  Aligned_cols=54  Identities=31%  Similarity=0.498  Sum_probs=51.4

Q ss_pred             Ceec--CCCCccccCchHHHHHHHHhcCCCCCeeCCC--CCccccCcHHHHHHHHhhCC
Q psy7454          40 PFTC--NMCEFKCRDNRTLKAHHINIHTGQKPYPCRY--CDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        40 ~~~c--~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ||.|  ..|++.|.....|..| ++.|.++++|.|..  |++.|.....|..|+++|++
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H-~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHH-HHHHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             CccCCCCCCCcccCCHHHHHHH-HHHhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            6889  9999999999999998 89999999999988  99999999999999999987

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=3.1e-13  Score=58.65  Aligned_cols=40  Identities=20%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      .++|.++++|.|+.|++.|.....|..|+++|++++||.|
T Consensus         2 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A            2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             CSSCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             CCccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            4578888888888888888888888888888888888776

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.40  E-value=2.4e-13  Score=59.27  Aligned_cols=37  Identities=19%  Similarity=0.331  Sum_probs=19.5

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      .|.++++|.|..|++.|...+.|..|+++|++++||.
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   40 (42)
T 2el5_A            4 GSSGENPYECSECGKAFNRKDQLISHQRTHAGESGPS   40 (42)
T ss_dssp             SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCC
T ss_pred             CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCC
Confidence            4445555555555555555555555555555555543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=3e-13  Score=59.37  Aligned_cols=40  Identities=15%  Similarity=0.198  Sum_probs=29.1

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      ++|.++++|.|+.|++.|.....|..|+++|+++++|.|+
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   42 (43)
T 2yrm_A            3 SGSSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS   42 (43)
T ss_dssp             SCCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred             cCcCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence            4566777777777777777777777777777777777765

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.40  E-value=1.7e-13  Score=61.00  Aligned_cols=42  Identities=36%  Similarity=0.521  Sum_probs=25.1

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2emj_A            3 SGSSGTGEKPFECAECGKSFSISSQLATH-QRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSEECSSSSCEESSHHHHHHH-HHHHTTSCSSSSC
T ss_pred             CCCCCCCCCCEECCCCCcccCCHHHHHHH-HHHhCCCCCCCCC
Confidence            45555566666666666666666666665 5556666666554

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=2.2e-13  Score=60.56  Aligned_cols=42  Identities=26%  Similarity=0.464  Sum_probs=25.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2em4_A            3 SGSSGTGQRPYECIECGKAFKTKSSLICH-RRSHTGEKPSGPS   44 (46)
T ss_dssp             SCCCCCCSSSEECSSSCCEESSHHHHHHH-HHHHSSSSCCCCC
T ss_pred             CccccCCCcCcCCCCCCCccCCHHHHHHH-HHhcCCCCCCCCC
Confidence            45556666666666666666666666665 5566666666654

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.2e-13  Score=60.57  Aligned_cols=42  Identities=31%  Similarity=0.540  Sum_probs=24.9

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H-~~~H~~~~~~~C~   44 (46)
T 2em3_A            3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH-QKTHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSEECSSSCCEESSHHHHHHH-HHHHCCCCCCCSC
T ss_pred             CCCCCCCCcCeECCCCCcccCCHHHHHHH-HHHhCCCCCCCCC
Confidence            44555566666666666666666666665 5556666666554

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2e-13  Score=60.72  Aligned_cols=42  Identities=31%  Similarity=0.459  Sum_probs=26.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2ytp_A            3 SGSSGTGERHYECSECGKAFARKSTLIMH-QRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCCEECSSSCCEESSHHHHHHH-HTTTSCCCCCSSC
T ss_pred             cccCcCCCCCeECCcCCcccCCHHHHHHH-HHHhCCCCCCCCC
Confidence            45566666666666666666666666665 5666666666664

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=2.9e-13  Score=59.00  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=17.7

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .|.+++||.|..|++.|...+.|..|+++|++++||
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   39 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVKSGP   39 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCCSSC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCCCCC
Confidence            344444455555555555555555555555444444

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=1.9e-13  Score=60.79  Aligned_cols=42  Identities=38%  Similarity=0.561  Sum_probs=25.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2enf_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCSCBCSSSCCBCSSHHHHHHH-HTTTTTSSCCCCS
T ss_pred             CCcCCCCCcCeECCCCCcccCCHHHHHHH-HHhhCCCCCCCCC
Confidence            45556666666666666666666666665 5566666666654

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.2e-13  Score=60.55  Aligned_cols=42  Identities=33%  Similarity=0.550  Sum_probs=24.4

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eow_A            3 SGSSGTGEKPYKCNECGKAFRARSSLAIH-QATHSGEKPSGPS   44 (46)
T ss_dssp             CCCCSCCCCCEECTTSCCEESSHHHHHHH-HHHHCCCSCSCTT
T ss_pred             ccCCCCCCCCeeccccCChhcCHHHHHHH-HHHcCCCCCCCCC
Confidence            44555555666666666666666666555 5555555555554

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.7e-13  Score=60.25  Aligned_cols=42  Identities=29%  Similarity=0.450  Sum_probs=25.6

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.++++|.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2emi_A            3 SGSSGTGERHYECSECGKAFIQKSTLSMH-QRIHRGEKPSGPS   44 (46)
T ss_dssp             CCCSCSSCCCEECSSSCCEESSHHHHHHH-HGGGCSCCCCSCC
T ss_pred             CCcccCCCCCCCCCCCCcccCCHHHHHHH-HhHhCCCCCCCCC
Confidence            45556666666666666666666666665 5566666666554

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.1e-13  Score=60.66  Aligned_cols=42  Identities=31%  Similarity=0.506  Sum_probs=27.4

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|.....|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~   44 (46)
T 2emg_A            3 SGSSGTGENPFICSECGKVFTHKTNLIIH-QKIHTGERPSGPS   44 (46)
T ss_dssp             CCCCCCSCCSCBCTTTCCBCSSHHHHHHH-HTTTSCCCCSCSC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHH-HHHhCCCCCCCCC
Confidence            55566666666666666666666666666 5666666666665

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=3.1e-13  Score=60.07  Aligned_cols=43  Identities=35%  Similarity=0.577  Sum_probs=32.5

Q ss_pred             HhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          32 LGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        32 ~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +++|.++++|.|..|++.|.....|..| ++.|.+++||.|.+|
T Consensus         4 ~~~h~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A            4 GSSGTGEKPYKCDVCHKSFRYGSSLTVH-QRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSTTCCSEECSSSCCEESSHHHHHHH-HTTTSSSCCCSCCCC
T ss_pred             CCCCCCCCCeeCcccCcccCChHHHHHH-HHHhCCCCCCCCCCC
Confidence            4567777777787788777777777777 677777777777765

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2e-13  Score=60.69  Aligned_cols=42  Identities=33%  Similarity=0.553  Sum_probs=27.2

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~kp~~C~   44 (46)
T 2eor_A            3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH-QRIHTGEKPSGPS   44 (46)
T ss_dssp             SSSSSSCCCSEECTTTCCEESSHHHHHHH-HHHHHSCCCSSST
T ss_pred             CCcCcCCCcCccCCCCCCCcCCHHHHHHH-HHhcCCCCCCCCC
Confidence            45566666666666666666666666665 5666666666665

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.38  E-value=1.4e-13  Score=63.31  Aligned_cols=51  Identities=22%  Similarity=0.342  Sum_probs=45.7

Q ss_pred             CCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCe
Q psy7454          19 KFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPY   70 (103)
Q Consensus        19 ~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~   70 (103)
                      ++.|.....|..|+++|.++++|.|..|++.|...+.|..| ++.|.+++||
T Consensus         3 ~k~~~~~~~l~~h~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~kp~   53 (54)
T 1yui_A            3 AKRAKHPPGTEKPRSRSQSEQPATCPICYAVIRQSRNLRRH-LELRHFAKPG   53 (54)
T ss_dssp             CCCCSCSSCCCCCHHHHTSSCCEECTTTCCEESSHHHHHHH-HHHHTTTSCC
T ss_pred             ccccCCCcchhhHHHhcCCCCCccCCCCCcccCCHHHHHHH-HHHhccCCCC
Confidence            45677778888999999999999999999999999999998 8899999886

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.6e-13  Score=60.27  Aligned_cols=42  Identities=31%  Similarity=0.509  Sum_probs=26.0

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2ep1_A            3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH-QRIHTGENPSGPS   44 (46)
T ss_dssp             CCCCCSSCCSSCCSSSCCCCSSHHHHHHH-HGGGSSSCCCSSS
T ss_pred             cccCCCCCCCcCCCCCCchhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            45556666666666666666666666665 5666666666654

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=2.8e-13  Score=60.25  Aligned_cols=42  Identities=24%  Similarity=0.415  Sum_probs=24.5

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|.+|++.|...+.|..| ++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eoh_A            3 SGSSGSGKKPYECKECRKTFIQIGHLNQH-KRVHTGERSSGPS   44 (46)
T ss_dssp             CCCSCCCSCSCCCSSSCCCCSSHHHHHHH-HHHCSSCCSCSTT
T ss_pred             CCCCcCCCCCcCCCCcCchhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            44555555666666666666666666655 5556555555554

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=3.4e-13  Score=59.37  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC   72 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c   72 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C   43 (44)
T 2yu5_A            3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH-ERTHARKSGPSS   43 (44)
T ss_dssp             CSCCCSCCCSEECSSSSCEESSSHHHHHH-HHHCCCCCSSCC
T ss_pred             CccccCCCCCeECCCCCchhCCHHHHHHH-hHhcCCCCCCCC
Confidence            34444445555555555555555555544 444544444444

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.4e-13  Score=60.39  Aligned_cols=42  Identities=36%  Similarity=0.547  Sum_probs=23.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~p~~C~   44 (46)
T 2yts_A            3 SGSSGTGEKPYICNECGKSFIQKSHLNRH-RRIHTGEKPSGPS   44 (46)
T ss_dssp             CSCCCCSCCSEECSSSCCEESSHHHHHHH-GGGTSSCCSSCCC
T ss_pred             CCCCCCCCcCEECCCCChhhCChHHHHHH-HHhcCCCCCcCCC
Confidence            44555555555555555555555555555 5555555555554

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=3.9e-13  Score=59.70  Aligned_cols=42  Identities=33%  Similarity=0.530  Sum_probs=25.3

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2ytf_A            3 SGSSGTGEKPFECSECQKAFNTKSNLIVH-QRTHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSEECSSSCCEESSHHHHHHH-HHTSCSSSSSCCC
T ss_pred             CCCCCCCCCCcCCCCCCcccCCHHHHHHH-HHHhCCCCCCCCC
Confidence            44555666666666666666666666665 5566666666554

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.7e-13  Score=60.31  Aligned_cols=42  Identities=29%  Similarity=0.555  Sum_probs=26.1

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2em6_A            3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTH-QRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCCCCCBCSSSCCBCSSHHHHHHH-HTTTSSSCCCCTT
T ss_pred             CccccCCCCCeECCCCCcccCCHHHHHHH-HHHcCCCCCCCCC
Confidence            45556666666666666666666666665 5666666666654

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.2e-13  Score=60.60  Aligned_cols=42  Identities=31%  Similarity=0.519  Sum_probs=24.5

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eq2_A            3 SGSSGTGGKPYQCNECGKAFSQTSKLARH-QRVHTGEKPSGPS   44 (46)
T ss_dssp             CCCSSSSSCSSSCCSSCCCCSSHHHHHHH-GGGGCCCCCCCCC
T ss_pred             cccccCCCCCeECCCCCcccCCHHHHHHH-HHHcCCCCCCCCC
Confidence            44555555666666666666666666655 5556555555554

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.37  E-value=4.9e-13  Score=59.16  Aligned_cols=43  Identities=21%  Similarity=0.491  Sum_probs=35.2

Q ss_pred             hhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCC
Q psy7454          33 GMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCD   76 (103)
Q Consensus        33 ~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~   76 (103)
                      .+|+++++|.|..|++.|...+.|..| ++.|.++++|.|+.||
T Consensus         3 ~~h~~~k~~~C~~C~k~f~~~~~l~~H-~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A            3 SGSSGEKPYSCPVCGLRFKRKDRMSYH-VRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCCSSCCSSEETTTTEECSCHHHHHHH-HHHHSCCCCCCCCCCC
T ss_pred             CCcCCCCCCcCCCCCcccCCHHHHHHH-HHHccCCCCCCCcCCC
Confidence            356778888888888888888888887 7888888888888875

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=3e-13  Score=60.08  Aligned_cols=42  Identities=33%  Similarity=0.539  Sum_probs=25.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~~~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2yrj_A            3 SGSSGTGEKPYRCGECGKAFAQKANLTQH-QRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCCCCEECSSSCCEESSHHHHHHH-HTTTSSCCSSCSC
T ss_pred             CccCCCCCCCeECCCCCCccCCHHHHHHH-HHHcCCCCCCCCC
Confidence            45556666666666666666666666665 5566666666654

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=2.2e-13  Score=60.57  Aligned_cols=42  Identities=38%  Similarity=0.571  Sum_probs=25.2

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2yti_A            3 SGSSGTGEKPYKCNECGKVFTQNSHLARH-RGIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCSCCCTTCCSSSCCCCSSHHHHHHH-HTTTSCSCCSSTT
T ss_pred             CCcCCCCCcCeECCCCCcccCChhHHHHH-hHhcCCCCCCCCC
Confidence            44555566666666666666666666665 5566666666554

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.8e-13  Score=60.23  Aligned_cols=42  Identities=36%  Similarity=0.608  Sum_probs=21.3

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2yth_A            3 SGSSGSGEKPFQCEECGKRFTQNSHLHSH-QRVHTGEKPSGPS   44 (46)
T ss_dssp             CCSCCCCSSSBCCSSSCCCBSSHHHHHHH-GGGGTTCCCSSCC
T ss_pred             cccCCCCCcCCCCCCCCcccCCHHHHHHH-HHhcCCCCCCCCC
Confidence            34445555555555555555555555554 4455555555443

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.1e-13  Score=60.08  Aligned_cols=42  Identities=33%  Similarity=0.524  Sum_probs=25.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2en9_A            3 SGSSGAGKKLFKCNECKKTFTQSSSLTVH-QRIHTGEKPSGPS   44 (46)
T ss_dssp             CCSSCCSSCCCBCTTTCCBCSSHHHHHHH-HHHHTSSCCCSCC
T ss_pred             CCCCCCCCCCEECCccCcccCCHHHHHHH-HHHcCCCCCCCCC
Confidence            44556666666666666666666666665 5566666666654

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=5.2e-13  Score=58.70  Aligned_cols=37  Identities=27%  Similarity=0.442  Sum_probs=18.0

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++||
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eof_A            5 SSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGP   41 (44)
T ss_dssp             SCCSCCCSEECTTTCCEESCHHHHHHHHHHTTTSSCS
T ss_pred             cCCCCCCCeECCCCCcccCCHhHHHHHHHHhCCCCCC
Confidence            3444444455555555555555555555444444444

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.9e-13  Score=60.14  Aligned_cols=42  Identities=38%  Similarity=0.593  Sum_probs=25.8

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eq1_A            3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCCSCCCCCTTTTCCCSSHHHHHHH-HTTTCCSCCSSCC
T ss_pred             cccccCCCCCeECCcCChhhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            45556666666666666666666666665 5566666666654

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.1e-13  Score=60.12  Aligned_cols=42  Identities=26%  Similarity=0.425  Sum_probs=22.7

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C~   44 (46)
T 2eoz_A            3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQH-LRVHTQETLSGPS   44 (46)
T ss_dssp             SCCCCSSCCSEEETTTTEEESSHHHHHHH-HHHHSSCCSSSCC
T ss_pred             ccccCCCCCCeECcccChhhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            44455555555555555555555555555 4555555555554

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.2e-13  Score=60.05  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.++++|.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2yto_A            3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH-QQSHTGERHSGPS   44 (46)
T ss_dssp             CCCCCCSCCCEECSSSCCEESSHHHHHHH-HHHHTCCCBTTTB
T ss_pred             cccccCCCCCEECcccCCccCCHhHHHHH-HHHcCCCCCCCCC
Confidence            44455555555555555555555555554 4555555555543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=3.4e-13  Score=59.98  Aligned_cols=42  Identities=29%  Similarity=0.551  Sum_probs=24.9

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|.+|++.|.....|..| ++.|.+++||.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eon_A            3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH-HSVHSGERPSGPS   44 (46)
T ss_dssp             CSSSCSSCCSCBCSSSCCBCSSHHHHHHH-TTTTTSCCSCTTS
T ss_pred             CCCCCCCCcccCCCCCCcccCcHHHHHHH-HHhcCCCCCCCCC
Confidence            44555566666666666666666666665 5556666666554

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=2.7e-13  Score=59.68  Aligned_cols=41  Identities=24%  Similarity=0.394  Sum_probs=21.8

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC   72 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c   72 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.++++|.|
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~C   43 (44)
T 2eoj_A            3 SGSSGTGENPYECCECGKVFSRKDQLVSH-QKTHSGQSGPSS   43 (44)
T ss_dssp             SCCSSSSCCSCEETTTTEECSSHHHHHHH-HTTSSSSCSCCC
T ss_pred             CccccCCCcCeeCCCCCCccCCHHHHHHH-HHHcCCCCCCCC
Confidence            44455555555555555555555555554 455555555544

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=3.1e-13  Score=59.45  Aligned_cols=36  Identities=31%  Similarity=0.442  Sum_probs=17.6

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .|.++++|.|..|++.|.....|..|+++|++++||
T Consensus         6 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~   41 (44)
T 2en7_A            6 SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGP   41 (44)
T ss_dssp             CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSS
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCCCCC
Confidence            344444444544555555444555554444444444

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.34  E-value=1e-12  Score=58.96  Aligned_cols=43  Identities=28%  Similarity=0.413  Sum_probs=37.6

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCc
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDY   77 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~   77 (103)
                      .+.++++|.|.+|++.|.....|..| ++.|.+++||.|.+|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHH-GGGSCSCCCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHH-HHhcCCCCCccCCCCCC
Confidence            45678899999999999999999998 88999999999999975

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.34  E-value=7.7e-13  Score=57.59  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|.++++|.|..|++.|...+.|..|+++|++++||.
T Consensus         4 ~~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~k~~~   41 (42)
T 2epc_A            4 GSSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS   41 (42)
T ss_dssp             SCCCSSCCEECSSSCCEESSHHHHHHHHHHTTCCCCCC
T ss_pred             ccCCCCCCeECCCCCcccCCHHHHHHHhhhcCCCCCCC
Confidence            44556666666666666666666666666666666653

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=3.5e-13  Score=59.91  Aligned_cols=43  Identities=28%  Similarity=0.361  Sum_probs=31.6

Q ss_pred             HhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          32 LGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        32 ~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      +++|.++++|.|.+|++.|.....|..| ++.|.+++||.|.+|
T Consensus         4 ~~~h~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A            4 GSSGEGEKPYQCSECGKSFSGSYRLTQH-WITHTREKPSGPSSG   46 (46)
T ss_dssp             SSSCSCCCTTCCSSSCCCCSSHHHHHHH-HTHHHHCCCCSCCCC
T ss_pred             CCCCCCCCCeeCCCCCcccCCHHHHHHH-HHHcCCCCCCCCCCC
Confidence            4566777777777777777777777776 677777777777765

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=7.2e-13  Score=58.88  Aligned_cols=42  Identities=33%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCC-CCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG-QKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~-~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+ ++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~~~~~~C~   45 (46)
T 2eoy_A            3 SGSSGQKEKCFKCNKCEKTFSCSKYLTQH-ERIHTRGVKSGPSS   45 (46)
T ss_dssp             CCCCCCCSCCEECSSSCCEESSSHHHHHH-HTTCCSCCTTSSSC
T ss_pred             CccccCCCCCEECcCCCCcCCCHHHHHHH-HHHcCCCCCCCCCC
Confidence            44455555555555555555555555555 555555 5555553

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.6e-13  Score=58.94  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         5 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   42 (44)
T 2emb_A            5 SSGHTRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPS   42 (44)
T ss_dssp             SCCCCCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTT
T ss_pred             cccCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcC
Confidence            34455555555555555555555555555555555543

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=2.9e-13  Score=59.00  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=22.5

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|.++++|.|..|++.|...+.|..|+++|++++||.
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2ytb_A            4 GSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS   41 (42)
T ss_dssp             CCCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCCSCCC
T ss_pred             cccCCCCCeeCCCccchhCCHHHHHHHHHHhCCCCCCC
Confidence            44555566666666666666666666666666665553

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=6.6e-13  Score=58.48  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=25.0

Q ss_pred             HHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          61 INIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        61 ~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      ++.|.++++|.|.+|++.|...+.|..|+++|++++||.
T Consensus         4 ~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2epv_A            4 GSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPS   42 (44)
T ss_dssp             CCCCCCCCSEECSSSCCEESSHHHHHHHHGGGSSCSCCC
T ss_pred             CcccCCCcCeECCCCCcccCchHHHHHHHhHhcCCCCCC
Confidence            345666666666666666666666666666666666664

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=5.2e-13  Score=59.29  Aligned_cols=42  Identities=36%  Similarity=0.555  Sum_probs=26.0

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eq3_A            3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGPS   44 (46)
T ss_dssp             CCCSSCCCCSSEETTTTEECSSHHHHHHH-HTTSCCCCCCCSC
T ss_pred             cccCCCCCCCeECCCCChhhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            45556666666666666666666666665 5666666666654

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=9e-13  Score=58.55  Aligned_cols=41  Identities=29%  Similarity=0.603  Sum_probs=22.2

Q ss_pred             HhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          32 LGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        32 ~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      +++|.++++|.|.+|++.|.....|..| ++.|.+++||.|.
T Consensus         4 ~~~h~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2enh_A            4 GSSGTGEKPYECDVCRKAFSHHASLTQH-QRVHSGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSSCBCTTTCCBCSSSHHHHHH-GGGSCCSCCCCCC
T ss_pred             CCCcCCCCCcCCCCcCchhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            4445555555555555555555555554 4555555555553

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.1e-13  Score=67.90  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=31.0

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG   66 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~   66 (103)
                      |++++.+.+++.|+.|+..|. ...|..|+ .+.+++++.|+.|++.+. ...|..| +..+.+
T Consensus         8 H~~~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~~~~~C~~C~~~~~-~~~l~~H-~~~c~~   67 (75)
T 2d9k_A            8 HEETECPLRLAVCQHCDLELS-ILKLKEHE-DYCGARTELCGNCGRNVL-VKDLKTH-PEVCGR   67 (75)
T ss_dssp             CCCCCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHHCEEECSSSCCEEE-TTGGGTH-HHHBTT
T ss_pred             hCcccCCCcccCCcccChHhh-HHHHHHHH-hHcCCCceEcccCCCcCc-HHHHHHH-HHHccC
Confidence            444455555555555555552 45555555 455555555555555444 2445554 444444

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4.8e-13  Score=58.29  Aligned_cols=38  Identities=21%  Similarity=0.346  Sum_probs=24.4

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|.+++||.|..|++.|.+...|..|+++|++++||.
T Consensus         4 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2en2_A            4 GSSGGEKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS   41 (42)
T ss_dssp             CCCCSSCSEECTTTCCEESSHHHHHHHTHHHHSCCSSC
T ss_pred             cccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCCCCCC
Confidence            45566666666666666666666666666666666653

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=4e-13  Score=59.73  Aligned_cols=42  Identities=26%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|.++++|.|..|++.|.....|..| ++.|.++++|.|.
T Consensus         3 h~~~H~~~k~~~C~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2emz_A            3 SGSSGSGERPFKCNECGKGFGRRSHLAGH-LRLHSREKSSGPS   44 (46)
T ss_dssp             CCSCSSCCCSCCCSSSCCCCSSHHHHHHH-HHHHHHTTCCCSC
T ss_pred             CCcCCCCCCCeECCCCCcccCCHHHHHHH-HHHhCCCCCCCCC
Confidence            44555566666666666666666666665 5556666666554

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=5.8e-13  Score=58.04  Aligned_cols=39  Identities=31%  Similarity=0.501  Sum_probs=26.4

Q ss_pred             HHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          61 INIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        61 ~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      ++.|.+++||.|..|++.|...+.|..|+++|++++||.
T Consensus         3 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~   41 (42)
T 2eos_A            3 SGSSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS   41 (42)
T ss_dssp             CSCCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCCSSTT
T ss_pred             CcccCCCCCEECCCCCCccCCHHHHHHHHHhcCCCCCCC
Confidence            345666667777777777777777777777777776664

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5e-13  Score=58.84  Aligned_cols=36  Identities=25%  Similarity=0.231  Sum_probs=17.7

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .|.++++|.|..|++.|.....|..|+++|++++||
T Consensus         6 ~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   41 (44)
T 2eox_A            6 SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGP   41 (44)
T ss_dssp             CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCCCCC
T ss_pred             CCCCCCCeECcccCcccCCHHHHHHHHHHhCCCCCC
Confidence            344444455555555555555555555555444444

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=5.1e-13  Score=59.35  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=23.2

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      |+++|+++++|.|..|++.|...+.|..| ++.|.+++||.|.
T Consensus         3 H~~~H~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~~~~~C~   44 (46)
T 2en3_A            3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH-LRSHERTDPSGPS   44 (46)
T ss_dssp             CCCCSCCCCSEECSSSCCEESSSHHHHHH-HHHHHHSCCSSCS
T ss_pred             cccccCCCCCeeCcccChhhCCHHHHHHH-HHHhCCCCCCCCC
Confidence            44455555555555555555555555555 4555555555553

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.30  E-value=1.4e-12  Score=57.40  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=20.1

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         5 ~~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   42 (44)
T 2eou_A            5 SSGAAKTTSECQECGKIFRHSSLLIEHQALHAGESGPS   42 (44)
T ss_dssp             CSCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCC
T ss_pred             CCCCCCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCC
Confidence            34445555555555555555555555555555555543

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.29  E-value=1.8e-12  Score=57.95  Aligned_cols=44  Identities=30%  Similarity=0.480  Sum_probs=33.5

Q ss_pred             HHhhcCCCCCeecC--CCCccccCchHHHHHHHHhcCCCCCeeCCCC
Q psy7454          31 HLGMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTGQKPYPCRYC   75 (103)
Q Consensus        31 h~~~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C   75 (103)
                      |.++|+++++|.|.  .|++.|.....|..| ++.|.+++||.|..|
T Consensus         3 ~~~~H~~~k~~~C~~~~C~k~f~~~~~L~~H-~~~H~~~k~~~C~~C   48 (48)
T 2ent_A            3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRH-RRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCSSCCCCCEECCSSSCCCEESSHHHHHHH-HTTSCCCCSCSSCCC
T ss_pred             CCCCcCCCCCeECCCCCCCCccCCHHHHHHH-HHHhCCCCCCCCCCC
Confidence            34567777888887  788888888888887 777888888887765

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=3.1e-12  Score=55.39  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=27.0

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      .|.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS   40 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCCSCSC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCCCCcC
Confidence            4666777777777777777777777777777777764

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=2.7e-12  Score=62.91  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=58.8

Q ss_pred             hhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          26 GNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        26 ~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ..|..|++++.+++++.|..|+..|. ...|..| + .+.+++++.|..|++.|. ...|..|+.++.++.
T Consensus         3 ~~L~~H~~~~c~~r~~~C~~C~~~~~-~~~L~~H-~-~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~~   69 (75)
T 2d9k_A            3 SGSSGHEETECPLRLAVCQHCDLELS-ILKLKEH-E-DYCGARTELCGNCGRNVL-VKDLKTHPEVCGREG   69 (75)
T ss_dssp             CCCSCCCCCCCCCCCEECSSSCCEEC-HHHHHHH-H-HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTBS
T ss_pred             hHHHhhCcccCCCcccCCcccChHhh-HHHHHHH-H-hHcCCCceEcccCCCcCc-HHHHHHHHHHccCCc
Confidence            35677888899999999999999994 8889998 7 789999999999999887 589999999988764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.28  E-value=1.8e-13  Score=69.08  Aligned_cols=44  Identities=23%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCC
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE   47 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~   47 (103)
                      .++|.++++|.|+.|++.|.....|..|+++|++++||.|..|.
T Consensus        17 ~~~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~   60 (88)
T 1x6f_A           17 NGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQE   60 (88)
T ss_dssp             CCSCCCCSCEECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             ccccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhh
Confidence            45566777777777777777777777777777777777776654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.28  E-value=4.6e-12  Score=54.27  Aligned_cols=36  Identities=22%  Similarity=0.375  Sum_probs=28.7

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      |.++++|.|..||+.|...+.|..|+++|++++||.
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   36 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARL   36 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCccce
Confidence            456778888888888888888888888888888875

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.26  E-value=5.9e-12  Score=53.20  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=30.1

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCC
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKP   40 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~   40 (103)
                      +++|.++++|.|+.|++.|.....|..|+++|++++|
T Consensus         1 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            1 GSSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            4678888888888888888888888888888887664

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=3.2e-12  Score=56.46  Aligned_cols=38  Identities=39%  Similarity=0.697  Sum_probs=18.6

Q ss_pred             hcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeC
Q psy7454          34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC   72 (103)
Q Consensus        34 ~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c   72 (103)
                      +|.++++|.|..|++.|.....|..| ++.|.++++|.|
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C   43 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTH-QRIHTGEKSGPS   43 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHH-HTTTSSCCCCCS
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHH-HHHhCCCCCCCC
Confidence            34444455555555555555555444 444444444444

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=5e-12  Score=56.10  Aligned_cols=40  Identities=28%  Similarity=0.389  Sum_probs=19.8

Q ss_pred             hhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCC
Q psy7454          33 GMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCR   73 (103)
Q Consensus        33 ~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~   73 (103)
                      ++|.++++|.|..|++.|.....|..| ++.|.+++||.|.
T Consensus         5 ~~h~~~k~~~C~~C~k~F~~~~~L~~H-~~~H~~~k~~~C~   44 (46)
T 2eom_A            5 SSGHGERGHRCSDCGKFFLQASNFIQH-RRIHTGEKPSGPS   44 (46)
T ss_dssp             CCCCCCSSCCCSSSCCCCSSHHHHHHH-HHHHSSCCCSSCC
T ss_pred             CCCCCCCCcCCCCCCCeeCChHHHHHH-HHHhCCCCCCCCC
Confidence            344445555555555555555555554 4445555555443

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=7.4e-12  Score=54.78  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      |.++++|.|..|++.|.....|..|+++|++++||.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~   40 (43)
T 2yrm_A            5 SSGNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGP   40 (43)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSS
T ss_pred             cCCCCCEECCCCCCeeCChHHHHHHHHhhCCCCCcc
Confidence            445555555555555555555555555555555553

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=4.2e-12  Score=53.67  Aligned_cols=36  Identities=25%  Similarity=0.552  Sum_probs=29.5

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      +.|.++++|.|..|++.|.....|..|+++|++++|
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A            2 SSGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             CCCCCCCCCEETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            357778888888888888888888888888888765

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.23  E-value=1.4e-11  Score=52.04  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      |+++|.++++|.|+.|++.|.....|..|+++|.+
T Consensus         2 H~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~   36 (37)
T 1p7a_A            2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCcCCCCCCccCCCCCcccCcHHHHHHHHHHhcc
Confidence            56778888888888888888888888888887765

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.22  E-value=1.5e-11  Score=51.21  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=28.5

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      |.++++|.|..|++.|...+.|..|+++|++++|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            5678888888888888888888888888888765

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.21  E-value=1.3e-11  Score=52.85  Aligned_cols=37  Identities=16%  Similarity=0.208  Sum_probs=24.7

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeec
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTC   43 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c   43 (103)
                      |.++++|.|+.|++.|.....|..|+++|.++++|.+
T Consensus         1 h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            1 XWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             -CCSSSEECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             CCCCCceECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            3456677777777777777777777777777666554

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.21  E-value=2e-11  Score=50.91  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=28.3

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      |.++++|.|..|++.|...+.|..|+++|++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            5678888888888888888888888888888765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.19  E-value=2.2e-11  Score=50.28  Aligned_cols=32  Identities=13%  Similarity=0.148  Sum_probs=28.3

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      +||.|..||+.|...+.|..|+++|++++||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47889999999999999999999999998885

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.17  E-value=4.5e-11  Score=49.76  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKP   40 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~   40 (103)
                      +|.++++|.|+.|++.|.....|..|+++|.+++|
T Consensus         1 ~H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            1 GSSGKRPFVCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             CCSCCSCEECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            46677788888888888888888888888776653

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.17  E-value=4e-11  Score=49.85  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=26.2

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKP   40 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~   40 (103)
                      +|.++++|.|+.|++.|.....|..|+++|.+++|
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            1 GSSGSSGYVCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             CCCCCCSEECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             CCCCCCCeECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            36677778888888888877788888777776653

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=3.6e-11  Score=57.43  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=18.0

Q ss_pred             CCCCceeeCC--CCCcccCchhHHHHH-hhcCCCCCeecC
Q psy7454           8 AYRYKYVCFA--CKFYTYNTGNIKRHL-GMHLGEKPFTCN   44 (103)
Q Consensus         8 ~~~~~~~C~~--C~~~f~~~~~l~~h~-~~h~~~~~~~c~   44 (103)
                      +|++||.|+.  |++.|.+..+|..|+ ++|++++|+.|.
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~   62 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSA   62 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCcccc
Confidence            3444555533  555555555555553 345555554443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.13  E-value=5.1e-11  Score=56.92  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=18.8

Q ss_pred             CCCCCeeCCC--CCccccCcHHHHHHH-HhhCCCCCc
Q psy7454          65 TGQKPYPCRY--CDYKARETQALKVHT-KRYHPKMYD   98 (103)
Q Consensus        65 ~~~~~~~c~~--C~~~f~~~~~l~~H~-~~~~~~~~~   98 (103)
                      ++++||.|..  |++.|...+.|..|+ ++|++++||
T Consensus        23 sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~   59 (73)
T 1x3c_A           23 SPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPA   59 (73)
T ss_dssp             CSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCC
T ss_pred             cCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCc
Confidence            4555555543  555555555555554 345555554

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=6.9e-11  Score=50.42  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=28.4

Q ss_pred             hcCCCCCeeCCC--CCccccCcHHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRY--CDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .+.+++||.|.+  |++.|...+.|..|+++|+++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~~   38 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTALD   38 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            356788999986  9999999999999999998763

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.13  E-value=2.5e-11  Score=51.19  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=25.5

Q ss_pred             HHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          61 INIHTGQKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        61 ~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      ++.|.+++||.|..|++.|.....|..|+++|+++
T Consensus         3 ~~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCcCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            45667777777777777777777777777777654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.12  E-value=5.9e-11  Score=50.32  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=30.5

Q ss_pred             cCCCCCeeCC--CCCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          64 HTGQKPYPCR--YCDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        64 h~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      |.++++|.|.  .|++.|...+.|..|+++|++++||.
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~   38 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG   38 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTTC
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCCC
Confidence            4578889998  59999999999999999999888873

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.11  E-value=7e-11  Score=49.90  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=29.4

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHH-HhhcCCC
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRH-LGMHLGE   38 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h-~~~h~~~   38 (103)
                      +++|.+++||.|+.|++.|.....|..| +++|+++
T Consensus         1 ~~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            1 GSSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CCSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CCccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            4678888899999999999988889999 8888754

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.2e-10  Score=49.02  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=26.8

Q ss_pred             CCCCCCCceeeCCCCCcccCc-hhHHHHHhhcCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNT-GNIKRHLGMHLGE   38 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~-~~l~~h~~~h~~~   38 (103)
                      ++|.++++|.|+.|++.|... ..|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            2 SSGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             CSCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            567778888888888888887 8888888877664

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-10  Score=48.21  Aligned_cols=34  Identities=26%  Similarity=0.544  Sum_probs=27.5

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .|.++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCCC
Confidence            4677888888888888888888888888887763

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.08  E-value=1.8e-10  Score=48.19  Aligned_cols=34  Identities=21%  Similarity=0.281  Sum_probs=26.6

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +.|.++++|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            2 SSGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CCSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            3567777888888888888888888888887764

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.07  E-value=1.7e-12  Score=65.46  Aligned_cols=59  Identities=20%  Similarity=0.333  Sum_probs=49.0

Q ss_pred             HHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          31 HLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        31 h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      +.++|.++++|.|..|++.|...+.|..| ++.|.+++||.|..|.+    ...|..|.+++.+
T Consensus        16 ~~~~H~~~kpy~C~~C~k~F~~~~~L~~H-~~~Ht~ekp~~C~~~~~----~~~~~~~~~~~~~   74 (88)
T 1x6f_A           16 GNGPRLQNSTYQCKHCDSKLQSTAELTSH-LNIHNEEFQKRAKRQER----RKQLLSKQKYADG   74 (88)
T ss_dssp             CCCSCCCCSCEECSSSCCEESSHHHHHHH-HHHHHHHHHHHCCCCSC----CCCCCCCCCCCCC
T ss_pred             cccccCCCCCCcCCCCCCEeCCHHHHHHH-HHHhCCCCCcccchhhh----HHHHHhhhccccc
Confidence            35678999999999999999999999998 89999999999987654    4445566777665

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=1.5e-10  Score=48.47  Aligned_cols=34  Identities=29%  Similarity=0.658  Sum_probs=26.5

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .|.+++||.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccCC
Confidence            4667788888888888888888888888877653

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.3e-10  Score=48.96  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=26.8

Q ss_pred             hcCCCCCeeCCCCCccccCc-HHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARET-QALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~-~~l~~H~~~~~~~~   96 (103)
                      +|.++++|.|..|++.|... +.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            46777888888888888887 88888888887653

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=2.2e-10  Score=47.89  Aligned_cols=34  Identities=24%  Similarity=0.470  Sum_probs=25.4

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ++|.++++|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            2 SSGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             CSSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            3567777788888888887777777787777654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=1.4e-10  Score=48.58  Aligned_cols=34  Identities=18%  Similarity=0.219  Sum_probs=26.8

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .|.+++||.|..|++.|...+.|..|+++|++++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            4567788888888888888888888888887653

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2.8e-10  Score=47.51  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=25.3

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      .+|.++++|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            2 SSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CCSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            3567777788888888887777777777777654

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2.9e-10  Score=47.48  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=27.5

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .|.++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            3667788888888888888888888888888763

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.2e-10  Score=49.14  Aligned_cols=34  Identities=21%  Similarity=0.396  Sum_probs=27.6

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHH-HHhhCCC
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVH-TKRYHPK   95 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H-~~~~~~~   95 (103)
                      +.|.+++||.|..|++.|...+.|..| ++.|+++
T Consensus         2 ~~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            2 SSGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             CSSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             CccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            357788888888888888888888888 7777764

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=4.4e-10  Score=46.96  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=27.3

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .+.++++|.|..|++.|.....|..|+++|++++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            3567788888888888888888888888888763

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=4e-10  Score=48.00  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=24.0

Q ss_pred             CCCCCceeeCC--CCCcccCchhHHHHHhhcCCC
Q psy7454           7 NAYRYKYVCFA--CKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         7 h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +.+++||.|+.  |++.|.....|..|+++|+++
T Consensus         4 ~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            4 GSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             SSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            56677788875  888888877888888777764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=99.01  E-value=2.5e-10  Score=51.00  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHH-hhCCCCC
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTK-RYHPKMY   97 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~-~~~~~~~   97 (103)
                      |.++++|.|.+|++.|.....|..|++ +|+++.+
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            455666666666666666666666666 5655543

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.99  E-value=2.8e-10  Score=46.79  Aligned_cols=30  Identities=17%  Similarity=0.326  Sum_probs=20.5

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCe
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPF   41 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~   41 (103)
                      +|.|+.|++.|.....|..|+++|+++++|
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~~H~~~~~~   31 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHITLHELLGEE   31 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTTTCCC
T ss_pred             cccCCCCCchhCCHHHHHHHHHHhCCCCCC
Confidence            566777777777666777777777666665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.99  E-value=5.5e-10  Score=46.57  Aligned_cols=33  Identities=18%  Similarity=0.281  Sum_probs=24.8

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      .|.++++|.|+.|++.|.....|..|+++|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            466777778888888877777777777777654

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.99  E-value=3.1e-10  Score=47.99  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=24.6

Q ss_pred             CCCCCceeeC--CCCCcccCchhHHHHHhhcCCCCCe
Q psy7454           7 NAYRYKYVCF--ACKFYTYNTGNIKRHLGMHLGEKPF   41 (103)
Q Consensus         7 h~~~~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~~~   41 (103)
                      |+++++|.|+  .|++.|.....|..|+++|+++++|
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            4566677777  4777777777777777777766654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.98  E-value=4.5e-10  Score=50.18  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=24.7

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHh-hcCCCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLG-MHLGEKP   40 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~~~   40 (103)
                      +|+++++|.|..|++.|.....|..|++ +|.++..
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e~~   36 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAEEE   36 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC---
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCCCC
Confidence            4677778888888888888888888877 7776543

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=1e-09  Score=45.82  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      .|.++++|.|+.|++.|.....|..|+++|.++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            456667777777777777777777777777654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.93  E-value=2.9e-11  Score=49.50  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      +||.|..||+.|...+.|..|+++|++++||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4678888888888888888888888888876

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.91  E-value=1.1e-09  Score=46.04  Aligned_cols=33  Identities=18%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             cCCCCCeeCCC--CCccccCcHHHHHHHHhhCCCC
Q psy7454          64 HTGQKPYPCRY--CDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        64 h~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      |.++++|.|.+  |++.|...+.|..|+++|++++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            56778888874  8888888888888888887763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.90  E-value=1.8e-09  Score=42.89  Aligned_cols=30  Identities=23%  Similarity=0.504  Sum_probs=24.0

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ++||.|..|++.|.....|..|+++|++++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccCC
Confidence            467888888888888888888888887753

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.89  E-value=6.8e-10  Score=46.68  Aligned_cols=26  Identities=12%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHH
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHL   32 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~   32 (103)
                      +.+++||.|+.||+.|.+.++|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            34566666666666666666666665

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.88  E-value=2.3e-09  Score=42.54  Aligned_cols=30  Identities=37%  Similarity=0.858  Sum_probs=25.4

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      ++|.|..|++.|...+.|..|+++|+++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            468899999999999999999998888764

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.87  E-value=2.5e-09  Score=42.21  Aligned_cols=29  Identities=17%  Similarity=0.301  Sum_probs=23.5

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|..|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            47888888888888888888888887753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.84  E-value=8.1e-10  Score=49.05  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=16.2

Q ss_pred             hhcCCCCCeecC--CCCccccCchHHHHHHHHhcCC
Q psy7454          33 GMHLGEKPFTCN--MCEFKCRDNRTLKAHHINIHTG   66 (103)
Q Consensus        33 ~~h~~~~~~~c~--~C~~~~~~~~~l~~h~~~~h~~   66 (103)
                      ..|.++++|.|.  .|++.|...+.|..| ++.|.+
T Consensus        11 ~~H~~~k~~~C~~~~C~k~F~~~~~L~~H-~~~H~~   45 (47)
T 1ncs_A           11 VKEMPDKTFECLFPGCTKTFKRRYNIRSH-IQTHLE   45 (47)
T ss_dssp             CEEETTTEEECCCTTCCCEECSSSSHHHH-HHHHTT
T ss_pred             hccCCCCCeECCCCCCCCccCCHHHHHHH-HHHccC
Confidence            334455555553  355555555555554 444444

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.84  E-value=3.8e-09  Score=41.64  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|..|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            46788888888888888888888887753

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.84  E-value=4.2e-10  Score=50.00  Aligned_cols=36  Identities=11%  Similarity=0.194  Sum_probs=32.4

Q ss_pred             HHhcCCCCCeeCC--CCCccccCcHHHHHHHHhhCCCC
Q psy7454          61 INIHTGQKPYPCR--YCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        61 ~~~h~~~~~~~c~--~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ...|.+++||.|.  .|++.|...+.|..|+++|++++
T Consensus        10 ~~~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           10 YVKEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             SCEEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             HhccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4568999999996  79999999999999999999874

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.84  E-value=5e-09  Score=42.39  Aligned_cols=30  Identities=30%  Similarity=0.532  Sum_probs=24.4

Q ss_pred             CCCeeCC--CCCccccCcHHHHHHHHhhCCCC
Q psy7454          67 QKPYPCR--YCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        67 ~~~~~c~--~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ++||.|.  .|++.|...+.|..|+++|++++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            4678888  78888888888888888888763

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.83  E-value=3.2e-09  Score=44.59  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=24.2

Q ss_pred             CCCCCCceeeCC--CCCcccCchhHHHHHhhcCCC
Q psy7454           6 PNAYRYKYVCFA--CKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         6 ~h~~~~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      .|+++++|.|..  |++.|.....|..|+++|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            356777788873  888887777788887777664

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.82  E-value=5.2e-09  Score=49.82  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=20.5

Q ss_pred             cCCCCCeecCCCCccccCchHHHHHHHHhcCCC
Q psy7454          35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQ   67 (103)
Q Consensus        35 h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~   67 (103)
                      +.+++||.|..|++.|...+.|..| ++.|+++
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H-~r~Htg~   39 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQH-EAQHGVT   39 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHH-HHHHTTT
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhh-hhhhCCC
Confidence            4456666666666666666666666 5666654

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.79  E-value=2.1e-10  Score=46.87  Aligned_cols=30  Identities=13%  Similarity=0.312  Sum_probs=22.0

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCe
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPF   41 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~   41 (103)
                      +|.|+.|++.|.....|..|+++|++++||
T Consensus         2 p~~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            2 AFACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             CSSSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            577777777777777777777777777664

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.79  E-value=4.6e-09  Score=41.35  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|..|++.|.....|..|+++|++++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCCC
Confidence            46788888888888888888888887753

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.78  E-value=3.8e-09  Score=41.56  Aligned_cols=29  Identities=31%  Similarity=0.343  Sum_probs=22.9

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|..|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHHhccCC
Confidence            46788888888888888888888887653

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.78  E-value=5.5e-09  Score=40.91  Aligned_cols=28  Identities=18%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ++||.|..|++.|.....|..|+++|++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHhcCC
Confidence            3678888888888888888888877753

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.78  E-value=7.1e-09  Score=40.84  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ++|.|+.|++.|.....|..|+++|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            3677888888887777788887777654

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.78  E-value=5.8e-09  Score=41.91  Aligned_cols=29  Identities=21%  Similarity=0.603  Sum_probs=23.5

Q ss_pred             CCeeCC--CCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCR--YCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~--~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|.  .||+.|...+.|..|+++|++++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCCC
Confidence            467887  78888888888888888888763

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.77  E-value=6.7e-09  Score=40.36  Aligned_cols=27  Identities=26%  Similarity=0.677  Sum_probs=20.6

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      ++||.|..||+.|...+.|..|+++|+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHHCC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHHcc
Confidence            367788888888888888888877663

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.76  E-value=8.5e-09  Score=40.82  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ++|.|+.|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            2 KPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            4677777777777777777777766654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.75  E-value=5e-09  Score=40.83  Aligned_cols=27  Identities=19%  Similarity=0.506  Sum_probs=20.8

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      ++||.|..||+.|...+.|..|+++|+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTTCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHhcC
Confidence            367888888888888888888877663

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.73  E-value=8.1e-09  Score=40.00  Aligned_cols=27  Identities=26%  Similarity=0.481  Sum_probs=21.2

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      ||.|..|++.|.....|..|+++|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            477888888888888888888888764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=1.4e-09  Score=43.11  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=23.2

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|..|++.|...+.|..|+++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            46788888888888888888888887653

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=1.3e-08  Score=48.37  Aligned_cols=43  Identities=9%  Similarity=0.005  Sum_probs=35.1

Q ss_pred             CCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCC
Q psy7454           4 PRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCE   47 (103)
Q Consensus         4 ~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~   47 (103)
                      ...+.++++|.|..|++.|.....|..|+++|+++.. .+.++.
T Consensus         5 ~~~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~~~-~~~~~~   47 (66)
T 2epp_A            5 SSGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSL-QLGYID   47 (66)
T ss_dssp             SCSCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTTSC-CCCSCC
T ss_pred             CCCCCCccCcCCCCCCCccCCHHHHHhhhhhhCCCcc-cccccc
Confidence            3457788999999999999999999999999987643 444443

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.71  E-value=1.1e-08  Score=40.18  Aligned_cols=27  Identities=30%  Similarity=0.517  Sum_probs=19.0

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +|.|+.|++.|.....|..|+++|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            567777777777777777777776654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.17  E-value=1.6e-09  Score=43.13  Aligned_cols=28  Identities=29%  Similarity=0.524  Sum_probs=22.9

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +||.|..|++.|...+.|..|+++|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            5788888888888888888888888765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.70  E-value=1.7e-08  Score=42.35  Aligned_cols=25  Identities=16%  Similarity=0.340  Sum_probs=14.5

Q ss_pred             CCCCCeeCCCCCccccCcHHHHHHH
Q psy7454          65 TGQKPYPCRYCDYKARETQALKVHT   89 (103)
Q Consensus        65 ~~~~~~~c~~C~~~f~~~~~l~~H~   89 (103)
                      .+++||.|..||+.|.+.++|..|+
T Consensus         4 ~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            4 LKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCccCeECCCCCCccCCHhHccCcC
Confidence            3455556666666666665555555

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.69  E-value=1.2e-08  Score=40.46  Aligned_cols=29  Identities=24%  Similarity=0.430  Sum_probs=23.5

Q ss_pred             CCeeCCCCCccccCcHHHHHH-HHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVH-TKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H-~~~~~~~~   96 (103)
                      +||.|..|++.|...+.|..| +++|++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCCC
Confidence            468888899999888888888 67787763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.68  E-value=2.2e-08  Score=40.37  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=19.5

Q ss_pred             CceeeC--CCCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCF--ACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~--~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ++|.|+  .|++.|.....|..|+++|+++
T Consensus         2 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            467776  6777777777777777777654

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.68  E-value=1.2e-08  Score=40.10  Aligned_cols=27  Identities=41%  Similarity=0.691  Sum_probs=19.1

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CccCCCCCCccCChhHHHHHHHHhcCC
Confidence            567777777777777777777776654

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.67  E-value=1.7e-08  Score=39.85  Aligned_cols=28  Identities=25%  Similarity=0.627  Sum_probs=19.7

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEK   39 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~   39 (103)
                      +|.|+.|++.|.....|..|+++|.+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~~   29 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccCC
Confidence            5677777777777777777777766554

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.67  E-value=2e-08  Score=38.90  Aligned_cols=25  Identities=20%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      ++|.|+.||+.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4677777777777777777776665

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.67  E-value=1.5e-08  Score=39.36  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=18.8

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      ++|.|+.||+.|.....|..|+++|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4677777877777777777777765

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.66  E-value=2.2e-08  Score=39.08  Aligned_cols=26  Identities=19%  Similarity=0.329  Sum_probs=18.7

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      ++|.|+.|++.|.....|..|+++|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            46777777777777777777777664

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.65  E-value=2.2e-08  Score=40.11  Aligned_cols=27  Identities=26%  Similarity=0.536  Sum_probs=19.8

Q ss_pred             ceeeC--CCCCcccCchhHHHHHhhcCCC
Q psy7454          12 KYVCF--ACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        12 ~~~C~--~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ||.|+  .||+.|.....|..|+++|+++
T Consensus         2 p~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            2 PFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            57776  7777777777777777777654

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.64  E-value=1.5e-08  Score=39.69  Aligned_cols=27  Identities=30%  Similarity=0.582  Sum_probs=18.5

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            566777777777777777777666554

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.63  E-value=2.3e-08  Score=38.65  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      +|.|+.|++.|.....|..|+++|++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCC
Confidence            46788888888887788888777764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.59  E-value=3.8e-08  Score=38.93  Aligned_cols=27  Identities=26%  Similarity=0.436  Sum_probs=21.3

Q ss_pred             ceeeCCCCCcccCchhHHHH-HhhcCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRH-LGMHLGE   38 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h-~~~h~~~   38 (103)
                      +|.|+.|++.|.....|..| +++|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            67888888888888888888 6777664

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.01  E-value=5.5e-09  Score=41.24  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=19.8

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +|.|+.|++.|.....|..|+++|.++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            577777777777777777777777654

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.97  E-value=7.6e-09  Score=41.04  Aligned_cols=28  Identities=36%  Similarity=0.782  Sum_probs=19.8

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ++|.|+.|++.|.....|..|+++|.++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4677777777777777777777776654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.95  E-value=9e-09  Score=39.61  Aligned_cols=25  Identities=28%  Similarity=0.612  Sum_probs=19.3

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      +||.|..||+.|...+.|..|+++|
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            4677888888888888888887765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.48  E-value=1.2e-07  Score=37.04  Aligned_cols=27  Identities=22%  Similarity=0.379  Sum_probs=21.3

Q ss_pred             CCeeCC--CCCccccCcHHHHHHHHhhCC
Q psy7454          68 KPYPCR--YCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        68 ~~~~c~--~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ++|.|.  .|++.|...+.|..|+++|++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            467888  888888888888888887764

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.83  E-value=2.2e-08  Score=38.47  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=17.6

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhc
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      +|.|+.||+.|.....|..|+++|
T Consensus         2 p~~C~~C~k~f~~~~~l~~H~~~H   25 (26)
T 2lvu_A            2 PYVCERCGKRFVQSSQLANHIRHH   25 (26)
Confidence            577777777777777777777665

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.38  E-value=2.9e-07  Score=35.85  Aligned_cols=25  Identities=28%  Similarity=0.566  Sum_probs=19.2

Q ss_pred             ceeeC--CCCCcccCchhHHHHHhhcC
Q psy7454          12 KYVCF--ACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        12 ~~~C~--~C~~~f~~~~~l~~h~~~h~   36 (103)
                      +|.|+  .|++.|.....|..|+++|+
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~   28 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHT   28 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGT
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhC
Confidence            57777  88888877777888877765

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.88  E-value=8.1e-05  Score=34.93  Aligned_cols=46  Identities=24%  Similarity=0.487  Sum_probs=23.8

Q ss_pred             CCccccCchHHHHHHHHhcCCCC------CeeCC--CCCccccCcHHHHHHHHh
Q psy7454          46 CEFKCRDNRTLKAHHINIHTGQK------PYPCR--YCDYKARETQALKVHTKR   91 (103)
Q Consensus        46 C~~~~~~~~~l~~h~~~~h~~~~------~~~c~--~C~~~f~~~~~l~~H~~~   91 (103)
                      |++.|.....|..|....|.+.+      +|.|.  .|++.+.....|..|++.
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~   62 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINA   62 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHH
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccc
Confidence            55555555555554223444333      45564  466655555566666554

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00018  Score=33.74  Aligned_cols=47  Identities=30%  Similarity=0.579  Sum_probs=38.6

Q ss_pred             CCCCCcccCchhHHHHH-hhcCCCC------CeecC--CCCccccCchHHHHHHHHh
Q psy7454          16 FACKFYTYNTGNIKRHL-GMHLGEK------PFTCN--MCEFKCRDNRTLKAHHINI   63 (103)
Q Consensus        16 ~~C~~~f~~~~~l~~h~-~~h~~~~------~~~c~--~C~~~~~~~~~l~~h~~~~   63 (103)
                      ..|++.|.+...|..|+ ..|.+.+      +|.|.  .|+..+.....|..| ++.
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~H-ir~   62 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNH-INA   62 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHH-HHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhh-ccc
Confidence            35999999999999998 5787655      79996  899988888889888 543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.61  E-value=2e-05  Score=41.77  Aligned_cols=29  Identities=24%  Similarity=0.321  Sum_probs=17.9

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhh
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      .|+|.++|.|..|++.|.+...|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            45556666666666666666666666543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.52  E-value=2e-05  Score=41.76  Aligned_cols=29  Identities=21%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHh
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      .++|+++|.|..|++.|.+.+.|..|+++
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            35667778888888888888888777654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.82  E-value=0.00072  Score=29.43  Aligned_cols=25  Identities=16%  Similarity=0.269  Sum_probs=20.7

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhc
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      ..+.|+.|+..|.....|..||+.-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmkyc   35 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYC   35 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhhc
Confidence            4688999999998888899998743

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.77  E-value=0.0092  Score=33.09  Aligned_cols=78  Identities=12%  Similarity=0.215  Sum_probs=51.0

Q ss_pred             CCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          17 ACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        17 ~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      -|+..+. ...+..|... -.-.+..|+.|+..+ ....|..| ....-..+...|..|+..+. ...+..|.....|+.
T Consensus        89 GC~~~~~-~~~l~~H~~~-C~~~~v~C~~C~~~~-~r~~l~~H-~~~~C~~r~~~C~~C~~~~~-~~~l~~H~~~~~~~~  163 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQAH-CEFALMDCPQCQRPF-QKFHINIH-ILKDCPRRQVSCDNCAASMA-FEDKEIHDQNCPLAL  163 (170)
T ss_dssp             TCCCEEE-GGGHHHHHTT-CTTSEEECTTTCCEE-EGGGHHHH-HHHTCTTCEEECTTTCCEEE-GGGHHHHHTTCCC--
T ss_pred             CCCceec-HhHHHHHHhc-CCceeeECCCCChHH-HHHHHHHH-hhhhCCCCCeECCCCCCccC-HHHHHhHHHhCcChh
Confidence            3544432 3456667533 234677899998777 45567787 66666777889999998664 467789999999887


Q ss_pred             Ccc
Q psy7454          97 YDV   99 (103)
Q Consensus        97 ~~~   99 (103)
                      ++.
T Consensus       164 ~~~  166 (170)
T 3hcs_A          164 EHH  166 (170)
T ss_dssp             ---
T ss_pred             hhh
Confidence            763

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.71  E-value=0.0023  Score=27.86  Aligned_cols=28  Identities=32%  Similarity=0.463  Sum_probs=13.8

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .|.|+.|+..|.....|+.|++---++.
T Consensus        12 ~~~CPrCn~~f~~~~sLr~HmkycCp~~   39 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMCYCCPEM   39 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHHHHCTTT
T ss_pred             ceeCCcccccccchHHHHhhhhhcCcch
Confidence            3445555555555555555555444433

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.70  E-value=0.0021  Score=34.20  Aligned_cols=76  Identities=11%  Similarity=0.142  Sum_probs=48.6

Q ss_pred             CceeeCCCCCcccCchhHHHHH--hhcCCC-CCeec------CCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHL--GMHLGE-KPFTC------NMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARE   81 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~--~~h~~~-~~~~c------~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~   81 (103)
                      .++.|..|+..|.+...+..|.  +.|... +.+.+      +.-+..+....    + .....+...|.|..|...|.+
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~C~~C~~~f~s  105 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----A-EISDGEDRSKCCPVCNMTFSS  105 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----S-CCSSCCCTTTEETTTTEECSS
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----c-ccccCCCCCeEcCCCCCEeCC
Confidence            4688999999999999998887  334211 11111      01122222111    1 223455677899999999999


Q ss_pred             cHHHHHHHHh
Q psy7454          82 TQALKVHTKR   91 (103)
Q Consensus        82 ~~~l~~H~~~   91 (103)
                      ...+..|...
T Consensus       106 ~~~~~~H~~g  115 (127)
T 1zu1_A          106 PVVAESHYIG  115 (127)
T ss_dssp             HHHHHHHHTS
T ss_pred             HHHHHHHHCC
Confidence            9999998754

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.38  E-value=0.0041  Score=33.08  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=19.6

Q ss_pred             CCCeecCCCCccccCchHHHHHH
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHH   60 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~   60 (103)
                      .+++.|.+|...|.+.+.+..|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHH
Confidence            46789999999999999888883

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=95.82  E-value=0.021  Score=31.65  Aligned_cols=56  Identities=13%  Similarity=0.084  Sum_probs=41.7

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhcCCCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKP   69 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~   69 (103)
                      .+..|+.|+..+ ....|..|....-..+...|..|+..+.. ..+..| ...+.|+.+
T Consensus       109 ~~v~C~~C~~~~-~r~~l~~H~~~~C~~r~~~C~~C~~~~~~-~~l~~H-~~~~~~~~~  164 (170)
T 3hcs_A          109 ALMDCPQCQRPF-QKFHINIHILKDCPRRQVSCDNCAASMAF-EDKEIH-DQNCPLALE  164 (170)
T ss_dssp             SEEECTTTCCEE-EGGGHHHHHHHTCTTCEEECTTTCCEEEG-GGHHHH-HTTCCC---
T ss_pred             eeeECCCCChHH-HHHHHHHHhhhhCCCCCeECCCCCCccCH-HHHHhH-HHhCcChhh
Confidence            467899999877 56778999877677888899999987755 456787 777777654

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=95.61  E-value=0.017  Score=28.02  Aligned_cols=40  Identities=15%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRD   52 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~   52 (103)
                      .|.|..||..+. +..+..|...-.+...+.|..|+..|..
T Consensus        10 ~F~C~~Cgd~lK-K~kv~~H~~~Cr~~~~~SCIDC~~~F~~   49 (79)
T 1wjv_A           10 FFTCNACGESVK-KIQVEKHVSNCRNCECLSCIDCGKDFWG   49 (79)
T ss_dssp             EEEESSSCCEEE-TTHHHHHHHHCTTCCEEEETTTTEEEEG
T ss_pred             EEEcCCCCCeee-cccchhHHhhCCCCCcEEecccCCeeCC
Confidence            588999987754 4667888655555567889999988875

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.22  E-value=0.035  Score=22.49  Aligned_cols=21  Identities=14%  Similarity=0.396  Sum_probs=11.3

Q ss_pred             ceeeCCCCCcccCchhHHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHL   32 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~   32 (103)
                      .|.|+.|.+.+.....|..|.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hy   25 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHY   25 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHHHHH
Confidence            355555555555555555553

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.12  E-value=0.032  Score=22.61  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=16.0

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      .|.|+.|.+.+.....|..|....|
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H   29 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVH   29 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhcc
Confidence            4666777666666666666665544

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=94.94  E-value=0.011  Score=28.71  Aligned_cols=56  Identities=20%  Similarity=0.274  Sum_probs=41.0

Q ss_pred             CeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          40 PFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      .|.|..||..++. ..+..| .....+...+.|.-|+..|.. ..+..|..-.+.++.|
T Consensus        10 ~F~C~~Cgd~lKK-~kv~~H-~~~Cr~~~~~SCIDC~~~F~~-~~y~~HtsCISEaeKY   65 (79)
T 1wjv_A           10 FFTCNACGESVKK-IQVEKH-VSNCRNCECLSCIDCGKDFWG-DDYKSHVKCISEGQKY   65 (79)
T ss_dssp             EEEESSSCCEEET-THHHHH-HHHCTTCCEEEETTTTEEEEG-GGTTTCCCCCSCTTSS
T ss_pred             EEEcCCCCCeeec-ccchhH-HhhCCCCCcEEecccCCeeCC-CCEeCEeeeCChhhee
Confidence            4789999977655 457787 555545457899999999985 5677777666666665

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=94.77  E-value=0.016  Score=28.71  Aligned_cols=26  Identities=23%  Similarity=0.260  Sum_probs=15.1

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCCCCC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHPKMY   97 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~~~~   97 (103)
                      ...|.+||+.|..   |.+|+.+++|..|
T Consensus        21 ~iiClecGK~fK~---LkRHL~~~hgltp   46 (87)
T 2jsp_A           21 HIVCLECGGSFKS---LKRHLTTHHSMTP   46 (87)
T ss_dssp             CEECTBTCCEESB---HHHHHHHTTCSCH
T ss_pred             ceEecccchhhHH---HHHHHHHccCCCH
Confidence            3456666666663   5566666555444

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.42  E-value=0.16  Score=20.73  Aligned_cols=24  Identities=17%  Similarity=0.220  Sum_probs=15.9

Q ss_pred             CceeeCCCCCcccCchhHHHHHhh
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      ..+.|..|+..|....++.+|.+.
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhhhee
Confidence            356677777777766677777543

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=93.40  E-value=0.055  Score=27.73  Aligned_cols=30  Identities=27%  Similarity=0.543  Sum_probs=18.1

Q ss_pred             CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccc
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKA   79 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f   79 (103)
                      ..|+.|..||..|..            ...+|-.|+.|+...
T Consensus        65 v~p~~C~~CG~~F~~------------~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           65 IKPAQCRKCGFVFKA------------EINIPSRCPKCKSEW   94 (105)
T ss_dssp             ECCCBBTTTCCBCCC------------CSSCCSSCSSSCCCC
T ss_pred             EECcChhhCcCeecc------------cCCCCCCCcCCCCCc
Confidence            356778888877610            123455777777543

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=92.07  E-value=0.13  Score=19.78  Aligned_cols=21  Identities=14%  Similarity=0.615  Sum_probs=15.7

Q ss_pred             ceeeCCCCCcccCchhHHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHL   32 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~   32 (103)
                      .+.|++|.....+...|+.|.
T Consensus         3 k~~CpvCk~q~Pd~kt~~~H~   23 (28)
T 2jvx_A            3 DFCCPKCQYQAPDMDTLQIHV   23 (28)
T ss_dssp             CEECTTSSCEESSHHHHHHHH
T ss_pred             cccCccccccCcChHHHHHHH
Confidence            367888887777777777774

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=91.07  E-value=0.089  Score=25.60  Aligned_cols=13  Identities=15%  Similarity=0.383  Sum_probs=9.6

Q ss_pred             CCeeCCCCCcccc
Q psy7454          68 KPYPCRYCDYKAR   80 (103)
Q Consensus        68 ~~~~c~~C~~~f~   80 (103)
                      -.|+|+.||.-|.
T Consensus        50 F~FkCP~CgEEFy   62 (95)
T 2k5c_A           50 FVFKCPVCGEEFY   62 (95)
T ss_dssp             SEEECTTTCCEEE
T ss_pred             HhhcCCCccHHHh
Confidence            4578999887664

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=90.24  E-value=0.22  Score=21.54  Aligned_cols=12  Identities=42%  Similarity=0.861  Sum_probs=6.8

Q ss_pred             ceeeCCCCCccc
Q psy7454          12 KYVCFACKFYTY   23 (103)
Q Consensus        12 ~~~C~~C~~~f~   23 (103)
                      .|.|..||..+.
T Consensus         4 ~y~C~vCGyvyd   15 (46)
T 6rxn_A            4 KYVCNVCGYEYD   15 (46)
T ss_dssp             CEEETTTCCEEC
T ss_pred             EEECCCCCeEEe
Confidence            356666665553

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=89.49  E-value=0.25  Score=27.58  Aligned_cols=10  Identities=20%  Similarity=1.132  Sum_probs=4.6

Q ss_pred             eecCCCCccc
Q psy7454          41 FTCNMCEFKC   50 (103)
Q Consensus        41 ~~c~~C~~~~   50 (103)
                      |.|+.||..+
T Consensus       139 ~~C~~CG~i~  148 (170)
T 3pwf_A          139 YICPICGYTA  148 (170)
T ss_dssp             EECTTTCCEE
T ss_pred             eEeCCCCCee
Confidence            4445554433

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=89.26  E-value=0.26  Score=21.32  Aligned_cols=12  Identities=25%  Similarity=0.351  Sum_probs=6.6

Q ss_pred             eeeCCCCCcccC
Q psy7454          13 YVCFACKFYTYN   24 (103)
Q Consensus        13 ~~C~~C~~~f~~   24 (103)
                      |.|-.||+.|..
T Consensus         4 Y~C~rCg~~fs~   15 (48)
T 4ayb_P            4 YRCGKCWKTFTD   15 (48)
T ss_dssp             -CCCCTTTTCCC
T ss_pred             EEeeccCCCccH
Confidence            556666666644

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=88.14  E-value=0.28  Score=28.14  Aligned_cols=11  Identities=18%  Similarity=0.615  Sum_probs=6.7

Q ss_pred             CeecCCCCccc
Q psy7454          40 PFTCNMCEFKC   50 (103)
Q Consensus        40 ~~~c~~C~~~~   50 (103)
                      .|.|.+||..+
T Consensus       171 ~~~C~~CG~i~  181 (202)
T 1yuz_A          171 FHLCPICGYIH  181 (202)
T ss_dssp             EEECSSSCCEE
T ss_pred             EEEECCCCCEE
Confidence            46666666544

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=87.26  E-value=0.82  Score=24.09  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=11.0

Q ss_pred             CCeecCCCCccccCchHHHHH
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      .+..|-.|...|.....+..|
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H   34 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSH   34 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHH
T ss_pred             CceeEecCCCcccCHHHHHHH
Confidence            345555555555555555554

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=87.13  E-value=0.51  Score=22.34  Aligned_cols=13  Identities=23%  Similarity=0.549  Sum_probs=7.7

Q ss_pred             CCeecCCCCcccc
Q psy7454          39 KPFTCNMCEFKCR   51 (103)
Q Consensus        39 ~~~~c~~C~~~~~   51 (103)
                      -.|.|..||..|.
T Consensus        27 v~Y~C~~CG~~~e   39 (70)
T 1twf_L           27 LKYICAECSSKLS   39 (70)
T ss_dssp             CCEECSSSCCEEC
T ss_pred             EEEECCCCCCcce
Confidence            4466666666543

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=87.12  E-value=0.46  Score=27.38  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=22.8

Q ss_pred             CCCeeCCCCCccccC-cHHHHHHHHhhC
Q psy7454          67 QKPYPCRYCDYKARE-TQALKVHTKRYH   93 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~-~~~l~~H~~~~~   93 (103)
                      ..+..|..|+..|.. -..|+.|+..+-
T Consensus       167 ~~~L~C~~C~~~f~n~~~~LK~HL~~e~  194 (204)
T 3sp4_A          167 QEDLKCWRCGETFGRHFTKLKAHLQEEY  194 (204)
T ss_dssp             GSCCBCTTTCCBCTTCHHHHHHHHHHHH
T ss_pred             CCCceeCCCCchhhcccHHHHHHHHHHH
Confidence            457899999999986 889999988763

>2k9h_A Glycoprotein; hantavirus, zinc finger, CCHC, metal binding protein; NMR {Andes virus}

Probab=86.53  E-value=1.4  Score=19.72  Aligned_cols=17  Identities=29%  Similarity=1.073  Sum_probs=7.6

Q ss_pred             cCCCCccccCchHHHHH
Q psy7454          43 CNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        43 c~~C~~~~~~~~~l~~h   59 (103)
                      |++|..-......|..|
T Consensus         6 C~~C~~ECET~kEl~~H   22 (57)
T 2k9h_A            6 CDVCHHECETAKELESH   22 (57)
T ss_dssp             CTTTCCBCSSTTTHHHH
T ss_pred             hhHHHhhhhhHHHHHHH
Confidence            44444444444444444

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=85.83  E-value=0.79  Score=19.05  Aligned_cols=21  Identities=14%  Similarity=0.279  Sum_probs=11.1

Q ss_pred             ceeeCCCCCcccCchhHHHHHh
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLG   33 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~   33 (103)
                      .+.|+.|+..+.. ..+..|.-
T Consensus         9 ~~~C~~C~~~i~~-~~~~EH~D   29 (39)
T 2i5o_A            9 QVPCEKCGSLVPV-WDMPEHMD   29 (39)
T ss_dssp             EEECTTTCCEEEG-GGHHHHHH
T ss_pred             CcccccccCcCCc-ccccchhh
Confidence            4666667666554 22344443

>2djr_A Zinc finger BED domain-containing protein 2; C2H2 type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.83  E-value=0.25  Score=23.79  Aligned_cols=26  Identities=35%  Similarity=0.484  Sum_probs=16.3

Q ss_pred             CeeCCCCCcccc-------CcHHHHHHHHhhCC
Q psy7454          69 PYPCRYCDYKAR-------ETQALKVHTKRYHP   94 (103)
Q Consensus        69 ~~~c~~C~~~f~-------~~~~l~~H~~~~~~   94 (103)
                      .-.|..|++.+.       -.+.|.+|+...|.
T Consensus        28 ~A~Ck~C~k~ls~g~~s~~GTS~L~rHL~~~H~   60 (76)
T 2djr_A           28 YATCRLCGRQVSRGPGVNVGTTALWKHLKSMHR   60 (76)
T ss_dssp             CEEESSSCCBCCCCSSCCSSSCHHHHHHHHTTH
T ss_pred             EEECCCCCCccCCCCCCCCchHHHHHHHHHHCH
Confidence            346666766665       34577777776553

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=85.32  E-value=0.9  Score=21.03  Aligned_cols=10  Identities=30%  Similarity=0.843  Sum_probs=5.3

Q ss_pred             eeeCCCCCcc
Q psy7454          13 YVCFACKFYT   22 (103)
Q Consensus        13 ~~C~~C~~~f   22 (103)
                      |.|..||..+
T Consensus        22 Y~C~~Cg~~~   31 (63)
T 3h0g_L           22 YLCADCGARN   31 (63)
T ss_dssp             CBCSSSCCBC
T ss_pred             EECCCCCCee
Confidence            5555555444

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=84.86  E-value=0.71  Score=24.05  Aligned_cols=11  Identities=18%  Similarity=0.368  Sum_probs=6.1

Q ss_pred             eeeCCCCCccc
Q psy7454          13 YVCFACKFYTY   23 (103)
Q Consensus        13 ~~C~~C~~~f~   23 (103)
                      +.|..||..|.
T Consensus        74 ~~C~~CG~~~e   84 (119)
T 2kdx_A           74 LECKDCSHVFK   84 (119)
T ss_dssp             EECSSSSCEEC
T ss_pred             EEcCCCCCEEe
Confidence            55555655553

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=83.73  E-value=0.23  Score=24.40  Aligned_cols=31  Identities=32%  Similarity=0.732  Sum_probs=19.3

Q ss_pred             CCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCcccc
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKAR   80 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~   80 (103)
                      ..|.|+.||......           ...-.|.|..|+..|.
T Consensus        26 ~~y~Cp~CG~~~v~r-----------~atGiW~C~~Cg~~~a   56 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDR-----------QGTGIWQCSYCDYKFT   56 (83)
T ss_dssp             SCEECSSSCCEEEEE-----------EETTEEEETTTCCEEE
T ss_pred             ccCcCCCCCCcceec-----------cCCCeEECCCCCCEec
Confidence            468899988633211           1223578888887754

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=83.00  E-value=0.48  Score=26.87  Aligned_cols=9  Identities=22%  Similarity=0.907  Sum_probs=4.3

Q ss_pred             eeeCCCCCc
Q psy7454          13 YVCFACKFY   21 (103)
Q Consensus        13 ~~C~~C~~~   21 (103)
                      |.|..||..
T Consensus       156 ~~C~~CG~~  164 (191)
T 1lko_A          156 WRCRNCGYV  164 (191)
T ss_dssp             EEETTTCCE
T ss_pred             EEECCCCCE
Confidence            445555444

>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}

Probab=82.26  E-value=0.89  Score=25.00  Aligned_cols=12  Identities=33%  Similarity=0.775  Sum_probs=7.8

Q ss_pred             ceeeCCCCCccc
Q psy7454          12 KYVCFACKFYTY   23 (103)
Q Consensus        12 ~~~C~~C~~~f~   23 (103)
                      .|.|..||..|.
T Consensus       132 ~y~C~~Cg~~~~  143 (165)
T 2lcq_A          132 RYVCIGCGRKFS  143 (165)
T ss_dssp             CEEESSSCCEES
T ss_pred             EEECCCCCCccc
Confidence            466777776664

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=81.43  E-value=0.68  Score=20.68  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=14.6

Q ss_pred             eeCCCCCccccCcHHHHHHHH
Q psy7454          70 YPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      -.|..|+..|.....++.|+-
T Consensus        14 ~eC~lC~vkYs~r~slqDHIF   34 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIF   34 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHT
T ss_pred             ccccccCcccccccchhhhhc
Confidence            467777777777777776654

>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A*

Probab=81.30  E-value=0.86  Score=26.26  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=11.6

Q ss_pred             ceeeCCCCCcccC-chhHHHHHhh
Q psy7454          12 KYVCFACKFYTYN-TGNIKRHLGM   34 (103)
Q Consensus        12 ~~~C~~C~~~f~~-~~~l~~h~~~   34 (103)
                      +..|..|+..|.. ...|+.|...
T Consensus       169 ~L~C~~C~~~f~n~~~~LK~HL~~  192 (204)
T 3sp4_A          169 DLKCWRCGETFGRHFTKLKAHLQE  192 (204)
T ss_dssp             CCBCTTTCCBCTTCHHHHHHHHHH
T ss_pred             CceeCCCCchhhcccHHHHHHHHH
Confidence            4455555555544 4445555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d2epsa1	39	g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [	1e-06
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	6e-05
d2ct1a2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	2e-04
d2cota2	38	g.37.1.1 (A:7-44) Zinc finger and SCAN domain-cont	6e-04
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1x6ea1	33	g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (H	0.002
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.004

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (93), Expect = 1e-06
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPC 72
           KP+ C  C         L  H   +HT ++P+ C
Sbjct: 3  GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 37

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 6e-05
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
           H+G+KPY C  C  +  ++  +K+H  + H
Sbjct: 2  THSGEKPYECYICHARFTQSGTMKMHILQKH 32

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (78), Expect = 2e-04
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 35 HLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          H GEKP+ C +C  +   + T+K H +  HT 
Sbjct: 3  HSGEKPYECYICHARFTQSGTMKMHILQKHTE 34

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 6e-04
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 30 RHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          R        + + C+ C      +  L  H    HTG
Sbjct: 2  RSEWQQRERRRYKCDECGKSFSHSSDLSKHRR-THTG 37

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.4 bits (72), Expect = 0.002
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 34 MHLGEKPFTCNMCEFKCRDNRTLKAHHINIHTG 66
          +H GEKP+ C  C      +  L  H   +HTG
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQHQR-VHTG 32

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (71), Expect = 0.002
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYH 93
          IH+G+KPY C  C      +  L  H +R H
Sbjct: 1  IHSGEKPYGCVECGKAFSRSSILVQH-QRVH 30

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.4 bits (69), Expect = 0.004
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPKMY 97
           HTG+KPY C +CD   R+ Q L +H KRYH   +
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNF 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.8
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.79
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.59
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.57
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.55
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.53
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.51
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.51
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.49
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.46
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.43
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.42
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.4
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.4
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.4
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.4
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.37
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.33
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.31
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.3
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.29
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.28
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.24
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.23
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.22
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.19
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.17
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.16
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.14
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.07
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.05
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.01
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.0
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.99
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.87
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.87
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.74
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.73
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.61
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.56
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.51
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.48
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.44
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.43
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.31
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.29
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.16
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.11
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.08
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.08
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.04
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.03
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.97
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.94
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.92
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.91
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.91
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.9
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.89
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.83
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.82
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.77
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.74
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.7
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.67
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.55
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.55
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	97.53
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.49
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.47
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.42
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.42
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.41
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.33
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.31
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.2
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.09
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.97
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.9
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.87
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.79
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.74
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.7
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.52
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	96.48
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	96.41
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.4
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.38
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	96.38
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	96.27
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.15
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.92
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	95.9
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.74
d1y0jb1	36	U-shaped transcription factor, different fingers {	95.69
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.55
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.52
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	95.48
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	95.28
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	95.22
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.14
d2ak3a2	37	Microbial and mitochondrial ADK, insert "zinc fing	94.56
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.53
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.5
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	94.47
d1zina2	35	Microbial and mitochondrial ADK, insert "zinc fing	93.39
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	93.3
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	93.18
d1akya2	38	Microbial and mitochondrial ADK, insert "zinc fing	92.73
d1s3ga2	35	Microbial and mitochondrial ADK, insert "zinc fing	92.58
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	92.17
d1e4va2	35	Microbial and mitochondrial ADK, insert "zinc fing	92.09
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	91.43
d2ghfa2	36	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	91.35
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	90.36
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	89.81
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	87.2
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	87.08
d1fu9a_	36	U-shaped transcription factor, different fingers {	86.56
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	83.42
d2czra1	218	TBP-interacting protein {Thermococcus kodakaraensi	82.51
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	80.38

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=8.1e-20  Score=83.15  Aligned_cols=53  Identities=26%  Similarity=0.556  Sum_probs=28.8

Q ss_pred             CCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      |+||.|. ||+.|.....|..| +++|++++||.|.+||+.|...+.|..|+++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H-~~~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRH-MSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHH-HHHHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHH-hhccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            3455552 55555555555555 45555555555555555555555555555443

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-19  Score=82.52  Aligned_cols=53  Identities=32%  Similarity=0.657  Sum_probs=49.9

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCccccCchHHHHHHHHhc
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFKCRDNRTLKAHHINIH   64 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~~~~~~~l~~h~~~~h   64 (103)
                      ++||.|+ ||+.|.....|..|+++|++++||.|.+||++|...+.|..| +++|
T Consensus         1 EK~y~C~-Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~L~~H-~r~H   53 (53)
T d2csha1           1 DKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH-MKIH   53 (53)
T ss_dssp             CCCEECT-TSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHH-HTTT
T ss_pred             CcCCCCC-CCCeECCHHHhHHHhhccccccCCcCCCcCCEecCHHHHHHH-HhcC
Confidence            5799995 999999999999999999999999999999999999999998 7765

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.9e-16  Score=65.08  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      |+++|++++||.|++||+.|...++|..|+++|+||
T Consensus         3 H~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           3 SEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             cCcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            678888888888888888888888888888888875

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-15  Score=61.57  Aligned_cols=33  Identities=30%  Similarity=0.567  Sum_probs=29.1

Q ss_pred             hcCCCCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          63 IHTGQKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        63 ~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +|++++||.|.+||+.|.+.+.|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478899999999999999999999999999886

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.8e-16  Score=65.67  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=28.8

Q ss_pred             HHhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          61 INIHTGQKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        61 ~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +.+|++++||.|.+||+.|.+.++|..|+++|+||
T Consensus         4 ~~~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           4 EWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             CcccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            56788888888888888888888888888888876

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.5e-15  Score=60.08  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=26.8

Q ss_pred             CCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           6 PNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         6 ~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +|+|++||.|.+||+.|.+.+.|..|+++|++|
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            578888888888888888888888888888765

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.8e-15  Score=61.99  Aligned_cols=35  Identities=23%  Similarity=0.581  Sum_probs=23.4

Q ss_pred             CCceeeCCCCCcccCchhHHHHHh-hcCCCCCeecC
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLG-MHLGEKPFTCN   44 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~-~h~~~~~~~c~   44 (103)
                      ++||.|..||+.|....+|..|++ +|++++||.|.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            456777777777777677777753 57777776665

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=8.4e-15  Score=61.08  Aligned_cols=35  Identities=14%  Similarity=0.161  Sum_probs=29.4

Q ss_pred             CCCCCCCCCceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454           3 MPRPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus         3 ~~~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      |.|+|+|++||.|+.|++.|.+.++|..|+++|..
T Consensus         2 h~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCCccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            57888888888888888888888888888888753

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=60.45  Aligned_cols=35  Identities=49%  Similarity=0.880  Sum_probs=29.6

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      ++|++++||.|.+||+.|.+.+.|..|+++|+++.
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~~   35 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPN   35 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCCC
Confidence            46888899999999999999999999998888764

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=59.86  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=27.6

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      |+|+|++||.|..||+.|...+.|..|+++|.++
T Consensus         1 R~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           1 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TTCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            5788888888888888888888888888887654

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-14  Score=59.20  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHH-hhCCCCCcc
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTK-RYHPKMYDV   99 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~-~~~~~~~~~   99 (103)
                      ++||.|..||+.|.+.++|..|++ +|++|+||.
T Consensus         3 ~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~   36 (39)
T d2epsa1           3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHK   36 (39)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCccCCCCCCCcCChHHhhccCcCccCCCcCcC
Confidence            455666666666666666666654 466666654

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=4.4e-14  Score=57.86  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=28.5

Q ss_pred             cCCCCCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          64 HTGQKPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        64 h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      |+|++||.|.+|++.|.+.++|..|+++|+.+.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~~   34 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDTL   34 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSCC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCcC
Confidence            678899999999999999999999999888653

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.5e-14  Score=58.10  Aligned_cols=34  Identities=29%  Similarity=0.715  Sum_probs=27.4

Q ss_pred             HhcCCCCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          62 NIHTGQKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        62 ~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      ++|+|++||.|..|++.|.+.++|..|+..++++
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            3578888888888888888888888888776654

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.42  E-value=6.5e-14  Score=55.10  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=25.8

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|.+||+.|.+.+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            58899999999999999999999999885

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=7.6e-14  Score=54.32  Aligned_cols=28  Identities=29%  Similarity=0.581  Sum_probs=24.8

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      |+||.|.+|++.|.+.+.|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5789999999999999999999999876

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=1.9e-13  Score=55.90  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=25.9

Q ss_pred             CCCCCceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454           7 NAYRYKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus         7 h~~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      |+|++||.|++|++.|.+..+|..|+++|+..
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            57888888888888888888888888888754

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=54.31  Aligned_cols=29  Identities=24%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|.+||+.|.+.+.|..|+++|+||+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            58899999999999999999999999875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=5.3e-14  Score=58.60  Aligned_cols=33  Identities=33%  Similarity=0.559  Sum_probs=23.1

Q ss_pred             HHhcCCCCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          61 INIHTGQKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        61 ~~~h~~~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      .+.|++++||.|.+|++.|.+.++|..|+++|.
T Consensus         3 ~R~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_           3 TRGSTGIKPFQCPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             SSTTCCSSSBCCTTTCCCBSSHHHHHHHHGGGT
T ss_pred             CCccCCccCeEeCCCCCEecCHHHHHHHHhcCc
Confidence            456677777777777777777777777777664

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-13  Score=55.92  Aligned_cols=30  Identities=23%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             CCCCCCCceeeCCCCCcccCchhHHHHHhh
Q psy7454           5 RPNAYRYKYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus         5 ~~h~~~~~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |+|+|++||.|+.|++.|.+..+|..|++.
T Consensus         1 R~HTgekP~~C~~C~k~F~~~~~L~~H~~~   30 (36)
T d2ct1a2           1 RTHSGEKPYECYICHARFTQSGTMKMHILQ   30 (36)
T ss_dssp             CCCSCCCSEECTTTCCEESCHHHHHHHHHH
T ss_pred             CccCCCCCEeCCCCcccccchHHHHHHccc
Confidence            577888888888888888888888888644

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.33  E-value=4.2e-13  Score=52.72  Aligned_cols=29  Identities=31%  Similarity=0.497  Sum_probs=21.8

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEK   39 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~   39 (103)
                      +||.|++|++.|.+.+.|..|+++|+||+
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCCC
Confidence            46777777777777777777777777764

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=6.4e-13  Score=52.10  Aligned_cols=29  Identities=21%  Similarity=0.488  Sum_probs=22.4

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEK   39 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~   39 (103)
                      +||.|+.||+.|.+.++|..|+++|++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCcC
Confidence            46778888888888888888888887764

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=5.1e-13  Score=51.92  Aligned_cols=28  Identities=18%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      ++||.|++|++.|.+.++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            4677777777777777777777777764

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.29  E-value=1.5e-13  Score=59.99  Aligned_cols=39  Identities=10%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             HHHHHHHhcCCCCCeeCCC--CCccccCcHHHHHHHHhhCCCC
Q psy7454          56 LKAHHINIHTGQKPYPCRY--CDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        56 l~~h~~~~h~~~~~~~c~~--C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +..| + .|.+++||.|.+  |++.|...+.|..|+++|+||+
T Consensus         7 l~~h-~-~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_           7 IDKY-V-KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             GGGS-C-EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             hcch-h-hccCCCCeECCcCCCCccccCchHHHhhcccccCCC
Confidence            4444 4 488888888877  8888888888888888888875

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=49.76  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=22.1

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      +||+|.+||+.|.+.+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            58888888888888888888888874

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3e-12  Score=50.43  Aligned_cols=28  Identities=25%  Similarity=0.515  Sum_probs=25.1

Q ss_pred             CCeeCCC--CCccccCcHHHHHHHHhhCCC
Q psy7454          68 KPYPCRY--CDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        68 ~~~~c~~--C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +||.|.+  ||+.|.+.+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5889988  999999999999999999986

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-12  Score=52.85  Aligned_cols=32  Identities=19%  Similarity=0.524  Sum_probs=21.6

Q ss_pred             eeeCC--CCCcccCchhHHHHHhhcCCCCCeecC
Q psy7454          13 YVCFA--CKFYTYNTGNIKRHLGMHLGEKPFTCN   44 (103)
Q Consensus        13 ~~C~~--C~~~f~~~~~l~~h~~~h~~~~~~~c~   44 (103)
                      |.|+.  |++.|.....|..|+++|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45654  777777777777777777777777665

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.9e-12  Score=50.17  Aligned_cols=28  Identities=21%  Similarity=0.542  Sum_probs=25.0

Q ss_pred             CCeeCCC--CCccccCcHHHHHHHHhhCCC
Q psy7454          68 KPYPCRY--CDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        68 ~~~~c~~--C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +||.|.+  ||+.|...+.|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5899977  999999999999999999886

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=2.6e-12  Score=55.99  Aligned_cols=32  Identities=22%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             cCCCCCeecCC--CCccccCchHHHHHHHHhcCCC
Q psy7454          35 HLGEKPFTCNM--CEFKCRDNRTLKAHHINIHTGQ   67 (103)
Q Consensus        35 h~~~~~~~c~~--C~~~~~~~~~l~~h~~~~h~~~   67 (103)
                      |.+++||.|.+  |++.|...+.|..| +++|+++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H-~r~Htge   46 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSH-IQTHLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHH-HHHHTTT
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhh-cccccCC
Confidence            55556666644  66666666666655 5555554

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.2e-12  Score=47.68  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=18.5

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      +||.|.+||+.|...+.|..|+++|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            46777777777777777777777663

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.4e-11  Score=48.95  Aligned_cols=29  Identities=21%  Similarity=0.603  Sum_probs=24.8

Q ss_pred             CCeeCC--CCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCR--YCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~--~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +||.|+  .||+.|.+.+.|..|+++|+||+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            578885  59999999999999999999875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.6e-11  Score=50.41  Aligned_cols=30  Identities=20%  Similarity=0.250  Sum_probs=17.8

Q ss_pred             eeCCC--CCccccCcHHHHHHHHhhCCCCCcc
Q psy7454          70 YPCRY--CDYKARETQALKVHTKRYHPKMYDV   99 (103)
Q Consensus        70 ~~c~~--C~~~f~~~~~l~~H~~~~~~~~~~~   99 (103)
                      |.|.+  ||+.|.....|.+|+++|+||+||.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htgekpy~   33 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYI   33 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTSCCCS
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCCCCEe
Confidence            44544  6666666666666666666666654

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.4e-11  Score=47.03  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=20.5

Q ss_pred             CceeeCC--CCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCFA--CKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +||.|+.  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            4677777  777777777777777777764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.3e-11  Score=47.12  Aligned_cols=28  Identities=21%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             CceeeCC--CCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCFA--CKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      +||.|+.  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            4677766  888888878888888877764

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=2.2e-10  Score=45.64  Aligned_cols=29  Identities=31%  Similarity=0.579  Sum_probs=24.4

Q ss_pred             CCCeeCCC--CCccccCcHHHHHHHHhhCCC
Q psy7454          67 QKPYPCRY--CDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        67 ~~~~~c~~--C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      |+||.|.+  |++.|...+.|.+|+++|+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57888877  999999999999998888753

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.5e-10  Score=45.86  Aligned_cols=29  Identities=28%  Similarity=0.516  Sum_probs=21.7

Q ss_pred             CceeeC--CCCCcccCchhHHHHHhhcCCCC
Q psy7454          11 YKYVCF--ACKFYTYNTGNIKRHLGMHLGEK   39 (103)
Q Consensus        11 ~~~~C~--~C~~~f~~~~~l~~h~~~h~~~~   39 (103)
                      +||.|+  .||+.|...++|..|+++|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCcccccC
Confidence            467774  48888888888888888887764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.1e-10  Score=45.46  Aligned_cols=27  Identities=26%  Similarity=0.588  Sum_probs=23.6

Q ss_pred             CCeeCCC--CCccccCcHHHHHHHHhhCC
Q psy7454          68 KPYPCRY--CDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        68 ~~~~c~~--C~~~f~~~~~l~~H~~~~~~   94 (103)
                      +||.|.+  |++.|...+.|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            5888977  99999999999999998876

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4e-10  Score=43.40  Aligned_cols=26  Identities=31%  Similarity=0.681  Sum_probs=21.6

Q ss_pred             CCeeCCC--CCccccCcHHHHHHHHhhC
Q psy7454          68 KPYPCRY--CDYKARETQALKVHTKRYH   93 (103)
Q Consensus        68 ~~~~c~~--C~~~f~~~~~l~~H~~~~~   93 (103)
                      +||.|.+  ||+.|...++|.+|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            5788877  8888888888888888875

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1.2e-09  Score=43.45  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=20.6

Q ss_pred             CCceeeCC--CCCcccCchhHHHHHhhcCC
Q psy7454          10 RYKYVCFA--CKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        10 ~~~~~C~~--C~~~f~~~~~l~~h~~~h~~   37 (103)
                      ++||.|+.  |++.|...++|.+|+++|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccC
Confidence            45777776  77777777777777777764

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=6.3e-10  Score=43.27  Aligned_cols=27  Identities=26%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             CceeeCC--CCCcccCchhHHHHHhhcCC
Q psy7454          11 YKYVCFA--CKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        11 ~~~~C~~--C~~~f~~~~~l~~h~~~h~~   37 (103)
                      +||.|+.  |++.|...++|..|+++|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4778876  88888888888888887764

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.3e-09  Score=38.71  Aligned_cols=29  Identities=28%  Similarity=0.762  Sum_probs=24.5

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      ++||+|..|....+.++.|..|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            57888888888888888888888888874

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.6e-09  Score=41.65  Aligned_cols=26  Identities=31%  Similarity=0.462  Sum_probs=19.2

Q ss_pred             CceeeCC--CCCcccCchhHHHHHhhcC
Q psy7454          11 YKYVCFA--CKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        11 ~~~~C~~--C~~~f~~~~~l~~h~~~h~   36 (103)
                      +||.|+.  ||+.|...++|..|+++|+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhhcc
Confidence            4677776  7777777777777777764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=6.7e-09  Score=38.69  Aligned_cols=27  Identities=33%  Similarity=0.562  Sum_probs=23.0

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |+||.|.+||+.|..+...++|.++|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhcc
Confidence            578899999999999888888888774

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=4.1e-09  Score=38.07  Aligned_cols=26  Identities=23%  Similarity=0.398  Sum_probs=20.3

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      |.+|++|++-|..+..|..|++.|++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46788888888888888888888764

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.8e-08  Score=38.90  Aligned_cols=30  Identities=17%  Similarity=0.187  Sum_probs=19.1

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCCCCCc
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHPKMYD   98 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~~~~~   98 (103)
                      ...|..||+.|...-.|.+|.-.|.+|+||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            345666666666666666666666666665

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.4e-08  Score=38.11  Aligned_cols=30  Identities=30%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcCCCCCe
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHLGEKPF   41 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~   41 (103)
                      ...|..||+.|...-.|.+|..+|++++||
T Consensus         5 ~~~ce~cgk~frdvyhlnrhklshs~ekpy   34 (35)
T d2epra1           5 QVACEICGKIFRDVYHLNRHKLSHSGEKPY   34 (35)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGGSCSCCCC
T ss_pred             hhhHHHHHHHHHHHHHHHhhhcccCCCCCC
Confidence            345666666666666666666666666665

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.6e-08  Score=35.94  Aligned_cols=25  Identities=20%  Similarity=0.297  Sum_probs=17.1

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      .+|.+|++.|.....|+-|++.|+|
T Consensus         2 hkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           2 HKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CccchhhhHhcchhHHHHHhhccCC
Confidence            4567777777777777777776664

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=4e-08  Score=36.57  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=17.0

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhc
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      ++||.|+.||+.|..+....+|.++|
T Consensus         1 EkPf~C~~CgrkFArsderkRH~kiH   26 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKIH   26 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhhc
Confidence            35666777777776666666666665

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=6.8e-08  Score=35.48  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=19.3

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      ..|.+||+.|..++.|++|+-.|+||
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            45777777777777777777777765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5.5e-08  Score=36.71  Aligned_cols=28  Identities=21%  Similarity=0.627  Sum_probs=19.1

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ++||.|++|+..|.....+.-|.+.|-|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            4567777777777777777777766654

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=9.4e-08  Score=35.10  Aligned_cols=26  Identities=35%  Similarity=0.549  Sum_probs=17.7

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ..|..||+.|...+.|++|+.+|+++
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            46777777777777777777776653

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.9e-08  Score=36.62  Aligned_cols=28  Identities=21%  Similarity=0.408  Sum_probs=18.6

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      ++||.|++|+..|..+.-+..|.++|.|
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg   28 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDG   28 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSC
T ss_pred             CCCcccchHHHHhhccccceEeeecccC
Confidence            3567777777777766666666666654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=9.6e-08  Score=35.43  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=16.5

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      |.|+.||.....++.|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            55666666666666666666666654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.3e-07  Score=35.09  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=13.7

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      |.|..||..-.-.+.|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            44555555555555555555555544

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4.4e-07  Score=33.45  Aligned_cols=27  Identities=26%  Similarity=0.603  Sum_probs=15.8

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLG   37 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~   37 (103)
                      +||+|+.|.......+.|..|.+.|+|
T Consensus         2 rpfkcqlcsy~srnssqltvhlr~htg   28 (29)
T d2dmda3           2 RPFKCQICPYASRNSSQLTVHLRSHTG   28 (29)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CcceeeecccccCCchheEEeeecccC
Confidence            456666665555555556666665554

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4.5e-07  Score=34.13  Aligned_cols=27  Identities=33%  Similarity=0.766  Sum_probs=19.8

Q ss_pred             CCeeCCC--CCccccCcHHHHHHHHhhCC
Q psy7454          68 KPYPCRY--CDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        68 ~~~~c~~--C~~~f~~~~~l~~H~~~~~~   94 (103)
                      +||.|.+  |++.+...++|..|++.++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4677765  77788888888888777654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.16  E-value=9.8e-07  Score=31.39  Aligned_cols=24  Identities=25%  Similarity=0.461  Sum_probs=20.5

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcC
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      |+|..|+++|..++.|.+|+++|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            578889999998889999988874

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.8e-06  Score=34.99  Aligned_cols=25  Identities=28%  Similarity=0.612  Sum_probs=15.9

Q ss_pred             CCCCeeCCCCCccccCcHHHHHHHH
Q psy7454          66 GQKPYPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        66 ~~~~~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      |-+||.|..|++.|-|..++.+|..
T Consensus         2 GiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           2 GIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCceeccchhhhhhhHHHHHHhhh
Confidence            4466666666666666666666643

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=2.4e-06  Score=34.39  Aligned_cols=29  Identities=21%  Similarity=0.429  Sum_probs=21.9

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGEK   39 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~~   39 (103)
                      +.|.|..|++.|.+...|.-|++.|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            46788888888888888888888776443

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=2.3e-06  Score=30.85  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=20.6

Q ss_pred             eCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          71 PCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        71 ~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      .|+.|.+.|.+.-.|+.|-+.|+||+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            57788888888888888888888774

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=3.2e-06  Score=31.19  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=21.4

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ..|.|..|...|.....|..|+.+|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4578888888888877788888777764

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=4.7e-06  Score=30.75  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=23.0

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +..|.|..|...|...-.|..|+..|+||
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            34577888888888888888888888875

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.5e-06  Score=30.54  Aligned_cols=27  Identities=37%  Similarity=0.965  Sum_probs=18.5

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      +||.|..|......+++|+.|+++-++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            467777777777777777777776443

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.5e-06  Score=30.91  Aligned_cols=28  Identities=29%  Similarity=0.960  Sum_probs=20.5

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +||+|..|..-..+.++|..|++..+++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             CCcccceecccccCcchHHHHHHHHccC
Confidence            4777777777777777787777776654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.94  E-value=6e-06  Score=33.19  Aligned_cols=29  Identities=28%  Similarity=0.543  Sum_probs=19.5

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhCCCC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYHPKM   96 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~~~~   96 (103)
                      +.|.|..|++.|.+...|--|+..|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHhhhcchH
Confidence            35677777777777777777777665543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=7.6e-06  Score=29.81  Aligned_cols=26  Identities=38%  Similarity=0.857  Sum_probs=19.3

Q ss_pred             CCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          68 KPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      +||+|..|...-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57777777777777777777777764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=7.1e-06  Score=30.29  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=19.9

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhc
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      ||.|..|+..|..+.+|..|+.+-
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkSK   24 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKSK   24 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHSS
T ss_pred             CcccceeeeeEeeccchhHhhhhh
Confidence            688888888888888888888764

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.8e-06  Score=29.94  Aligned_cols=26  Identities=23%  Similarity=0.669  Sum_probs=21.0

Q ss_pred             CceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          11 YKYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        11 ~~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      +||+|..|+..-...++|..|+++|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            57888888888888888888888774

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.90  E-value=5.9e-06  Score=31.28  Aligned_cols=26  Identities=31%  Similarity=0.754  Sum_probs=20.6

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ||.|.+|++.|.....+.+|+...++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            67888888888888888888776543

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.89  E-value=6.7e-06  Score=29.17  Aligned_cols=24  Identities=29%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |+|..|.+.|...+.|.+|++.|.
T Consensus         1 ykcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             CcccchHHHHHHHHHHHHHHHhhc
Confidence            568888888888888888887764

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.8e-05  Score=29.31  Aligned_cols=23  Identities=30%  Similarity=0.741  Sum_probs=12.8

Q ss_pred             ceeeCCCCCcccCchhHHHHHhh
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      ||.|+.|.......++|..|.++
T Consensus         2 py~cqyc~yrsadssnlkthikt   24 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKT   24 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHH
T ss_pred             Cccccccccccccchhhhhhhhc
Confidence            45555555555555555555544

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=1.1e-05  Score=30.29  Aligned_cols=20  Identities=30%  Similarity=0.921  Sum_probs=9.6

Q ss_pred             CeecCC--CCccccCchHHHHH
Q psy7454          40 PFTCNM--CEFKCRDNRTLKAH   59 (103)
Q Consensus        40 ~~~c~~--C~~~~~~~~~l~~h   59 (103)
                      ||.|.+  |++.+..+++|+.|
T Consensus         2 PY~Ck~~gC~K~YtdPSSLRKH   23 (29)
T d2glia5           2 PYVCKLPGCTKRYTDPSSLRKH   23 (29)
T ss_dssp             CEECCSTTTCCEESSHHHHHHH
T ss_pred             CeecccCCCCcccCCHHHHHHH
Confidence            444433  44555555555444

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.7e-05  Score=32.10  Aligned_cols=24  Identities=29%  Similarity=0.679  Sum_probs=18.2

Q ss_pred             CCCCCeecCCCCccccCchHHHHH
Q psy7454          36 LGEKPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        36 ~~~~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      +|.+||.|..|++.|-+.+++.+|
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH   24 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRH   24 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHh
Confidence            356788888888888888777776

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=1.3e-05  Score=28.83  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=15.2

Q ss_pred             eeCCCCCcccCchhHHHHHhhcCCC
Q psy7454          14 VCFACKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        14 ~C~~C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      .|+.|.+.|.++--|..|.+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            3566666666666666666666654

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.70  E-value=1.8e-05  Score=29.12  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=13.5

Q ss_pred             ceeeCC--CCCcccCchhHHHHHhhc
Q psy7454          12 KYVCFA--CKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        12 ~~~C~~--C~~~f~~~~~l~~h~~~h   35 (103)
                      ||.|+.  |++.|...+-|++|.++|
T Consensus         3 py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           3 PYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CccCCccCccccccCHHHHhhhhhcc
Confidence            555554  555666555566555544

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.67  E-value=2.1e-05  Score=29.03  Aligned_cols=28  Identities=25%  Similarity=0.547  Sum_probs=21.2

Q ss_pred             CCeeCC--CCCccccCcHHHHHHHHhhCCC
Q psy7454          68 KPYPCR--YCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        68 ~~~~c~--~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +||.|.  -|.+.|.+...|.+|.-+|+||
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            467775  3888888888888888888775

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.4e-05  Score=29.57  Aligned_cols=27  Identities=22%  Similarity=0.435  Sum_probs=17.9

Q ss_pred             CCeeCCC--CCccccCcHHHHHHH-HhhCC
Q psy7454          68 KPYPCRY--CDYKARETQALKVHT-KRYHP   94 (103)
Q Consensus        68 ~~~~c~~--C~~~f~~~~~l~~H~-~~~~~   94 (103)
                      +||.|..  |.+.|...++-..|+ ++|..
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTCS
T ss_pred             CCccccCCChhhhhcchhhhhhhccccccC
Confidence            4677765  777777777777776 55543

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.55  E-value=6.1e-05  Score=27.63  Aligned_cols=25  Identities=36%  Similarity=0.543  Sum_probs=17.8

Q ss_pred             CCeeCC--CCCccccCcHHHHHHHHhh
Q psy7454          68 KPYPCR--YCDYKARETQALKVHTKRY   92 (103)
Q Consensus        68 ~~~~c~--~C~~~f~~~~~l~~H~~~~   92 (103)
                      .||.|+  -|++.|...+-|++|.+.|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhcc
Confidence            367775  4777777777777777665

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=4.4e-05  Score=28.12  Aligned_cols=23  Identities=35%  Similarity=0.901  Sum_probs=20.1

Q ss_pred             CeeCCCCCccccCcHHHHHHHHh
Q psy7454          69 PYPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      ||.|..|...|....+|..|++.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            68889999999999999999876

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.49  E-value=4.2e-05  Score=28.87  Aligned_cols=20  Identities=25%  Similarity=0.683  Sum_probs=10.1

Q ss_pred             CeecCCCCccccCchHHHHH
Q psy7454          40 PFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h   59 (103)
                      ||.|.+|+..|.....|.+|
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH   20 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRH   20 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHH
T ss_pred             CcccccccchhhHHHHHHHH
Confidence            34455555555555555444

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=5.1e-05  Score=26.80  Aligned_cols=21  Identities=19%  Similarity=0.556  Sum_probs=17.4

Q ss_pred             ceeeCCCCCcccCchhHHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHL   32 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~   32 (103)
                      ||+|..|...|.++..|+.|+
T Consensus         2 pykcsscsqqfmqkkdlqshm   22 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHM   22 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHH
Confidence            688888888888888888886

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.42  E-value=6.6e-05  Score=27.66  Aligned_cols=27  Identities=26%  Similarity=0.408  Sum_probs=16.9

Q ss_pred             ceeeCC--CCCcccCchhHHHHHhhcCCC
Q psy7454          12 KYVCFA--CKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        12 ~~~C~~--C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      ||+|..  |++.|..-..|.+|..+|+++
T Consensus         2 pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           2 PFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             SEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CcCcccccccccchhhhhhhhhhccccCC
Confidence            555554  666776666677666666553

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00012  Score=25.78  Aligned_cols=23  Identities=26%  Similarity=0.660  Sum_probs=17.0

Q ss_pred             CeeCCCCCccccCcHHHHHHHHh
Q psy7454          69 PYPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      ||+|..|...|-+..+|+.|+-.
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            67777787777777777777643

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=6e-05  Score=28.43  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=16.4

Q ss_pred             CceeeCC--CCCcccCchhHHHHH-hhcC
Q psy7454          11 YKYVCFA--CKFYTYNTGNIKRHL-GMHL   36 (103)
Q Consensus        11 ~~~~C~~--C~~~f~~~~~l~~h~-~~h~   36 (103)
                      +||.|+.  |.+.|...+.-..|+ ++|.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CCccccCCChhhhhcchhhhhhhcccccc
Confidence            3666666  777777666666665 5554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00014  Score=28.91  Aligned_cols=27  Identities=26%  Similarity=0.577  Sum_probs=21.0

Q ss_pred             CCCeeC--CCCCccccCcHHHHHHHHhhC
Q psy7454          67 QKPYPC--RYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        67 ~~~~~c--~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      ++||.|  +-|+..|.....|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            678888  458888888888888877764

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00011  Score=27.04  Aligned_cols=21  Identities=29%  Similarity=0.708  Sum_probs=11.9

Q ss_pred             ceeeCCCCCcccCchhHHHHH
Q psy7454          12 KYVCFACKFYTYNTGNIKRHL   32 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~   32 (103)
                      ||+|..|.....+.++|..|+
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~   22 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHM   22 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHH
Confidence            555555555555555555554

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00019  Score=28.51  Aligned_cols=26  Identities=19%  Similarity=0.341  Sum_probs=15.1

Q ss_pred             CCceee--CCCCCcccCchhHHHHHhhc
Q psy7454          10 RYKYVC--FACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        10 ~~~~~C--~~C~~~f~~~~~l~~h~~~h   35 (103)
                      ++||.|  +-|+..|.+...|..|..-|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhh
Confidence            556666  33666666666666665444

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00016  Score=30.20  Aligned_cols=25  Identities=20%  Similarity=0.438  Sum_probs=22.0

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      .|.|..||++|+....|+.|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5789999999999999999988874

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.0003  Score=25.37  Aligned_cols=22  Identities=23%  Similarity=0.446  Sum_probs=12.5

Q ss_pred             CeeCCCCCccccCcHHHHHHHH
Q psy7454          69 PYPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      ||.|..||+.+-..-+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            4556666665555555555544

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00076  Score=24.44  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=13.5

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      -+|+.|...-.....|..|.++|.
T Consensus         3 ekc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGGC
T ss_pred             ccCcccccccCcHHHHHHhhcccc
Confidence            355555555555555555555553

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00055  Score=26.33  Aligned_cols=26  Identities=12%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      .|.|..||+.|.....+.+|...-.|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            47788888888888888887765544

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.00034  Score=25.20  Aligned_cols=20  Identities=30%  Similarity=0.565  Sum_probs=10.1

Q ss_pred             CeecCCCCccccCchHHHHH
Q psy7454          40 PFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        40 ~~~c~~C~~~~~~~~~l~~h   59 (103)
                      ||.|..||+.+..+..|..|
T Consensus         1 pf~c~kcgkcyfrkenlleh   20 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEH   20 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHH
Confidence            34455555555555555444

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00085  Score=24.30  Aligned_cols=23  Identities=17%  Similarity=0.460  Sum_probs=15.0

Q ss_pred             eeeCCCCCcccCchhHHHHHhhc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      -+|+.|..+..++..|..|.++|
T Consensus         3 ekc~ecsyscsskaalrvh~rih   25 (28)
T d1x5wa1           3 EKCSECSYSCSSKAALRIHERIH   25 (28)
T ss_dssp             EECSSSSCEESSHHHHHHHHGGG
T ss_pred             ccCcccccccCcHHHHHHhhccc
Confidence            45666666666666666666665

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.74  E-value=0.00069  Score=23.89  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=18.0

Q ss_pred             eeeCCCCCcccCchhHHHHHhh
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |+|+.|-+.|..+.++..|.++
T Consensus         2 ypcp~cfkeftrkdnm~ahvki   23 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKI   23 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEEE
Confidence            7888898888888888888654

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0005  Score=26.67  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=17.3

Q ss_pred             CCCCCccccCcHHHHHHHHhhCCC
Q psy7454          72 CRYCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        72 c~~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      |.--++.|...-.|..|++.|+||
T Consensus        10 C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          10 CSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCcchhHHHHHHHHhhcCCC
Confidence            333445677888888888888876

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.52  E-value=0.00072  Score=25.73  Aligned_cols=23  Identities=13%  Similarity=0.556  Sum_probs=18.7

Q ss_pred             ceeeCCCCCcccCchhHHHHHhh
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      .|.|..||-.|.+.+.|..|+..
T Consensus         8 rf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             ceeccccceeecChhHHHhhhhe
Confidence            47899999889888888888653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0029  Score=28.23  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             CCCceeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCc
Q psy7454           9 YRYKYVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEF   48 (103)
Q Consensus         9 ~~~~~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~   48 (103)
                      ....|.|+.|++.|.   .|.+-+........|.|..|+.
T Consensus        11 ~~~~y~Cp~C~~~ys---~Lda~~L~d~~~~~F~C~~C~~   47 (62)
T d1vd4a_          11 NRASFKCPVCSSTFT---DLEANQLFDPMTGTFRCTFCHT   47 (62)
T ss_dssp             SSSEEECSSSCCEEE---HHHHHHHEETTTTEEBCSSSCC
T ss_pred             cCCceECCCCCCCcc---hhhHHHhcCcCCCeEEecCCCC
Confidence            344577777776664   3444434444455666766654

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.0029  Score=23.14  Aligned_cols=25  Identities=32%  Similarity=0.567  Sum_probs=15.3

Q ss_pred             eecCCCCccccCchHHHHHHHHhcC
Q psy7454          41 FTCNMCEFKCRDNRTLKAHHINIHT   65 (103)
Q Consensus        41 ~~c~~C~~~~~~~~~l~~h~~~~h~   65 (103)
                      |.|..||+...+...++.|.+..|+
T Consensus         3 ftc~hcgkqlks~~gmkyhvmadhn   27 (30)
T d2ctda2           3 FTCHHCGKQLRSLAGMKYHVMANHN   27 (30)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             eechhHHHHHhhccCceEEEeeccc
Confidence            5666666666666666666554443

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00085  Score=27.97  Aligned_cols=25  Identities=16%  Similarity=0.240  Sum_probs=20.9

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      .|.|..|++.|.....|..|...|.
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eeeccccccccCCHHHHhHhHHhcC
Confidence            5789999999998888888877764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0018  Score=23.31  Aligned_cols=23  Identities=22%  Similarity=0.427  Sum_probs=19.1

Q ss_pred             ceeeCCCCCcccCchhHHHHHhh
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      .|.|+.|+.....++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            47899999888888889888764

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0031  Score=22.69  Aligned_cols=25  Identities=28%  Similarity=0.588  Sum_probs=20.4

Q ss_pred             CeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          69 PYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      .|.|+.|+-+....++|..|++..+
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3688889988889999998887644

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.27  E-value=0.0034  Score=22.03  Aligned_cols=24  Identities=29%  Similarity=0.707  Sum_probs=17.8

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      |.|+.|-+.|....++..|.++-+
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            677888888888888877776543

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0013  Score=25.44  Aligned_cols=21  Identities=19%  Similarity=-0.031  Sum_probs=16.0

Q ss_pred             CCCcccCchhHHHHHhhcCCC
Q psy7454          18 CKFYTYNTGNIKRHLGMHLGE   38 (103)
Q Consensus        18 C~~~f~~~~~l~~h~~~h~~~   38 (103)
                      -++.|.....|..|+++|++|
T Consensus        13 ~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          13 ELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCcchhHHHHHHHHhhcCCC
Confidence            345677778888899988875

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.92  E-value=0.0087  Score=24.76  Aligned_cols=26  Identities=23%  Similarity=0.492  Sum_probs=14.7

Q ss_pred             CCCeeCCCCCccccCcHHHHHHHHhh
Q psy7454          67 QKPYPCRYCDYKARETQALKVHTKRY   92 (103)
Q Consensus        67 ~~~~~c~~C~~~f~~~~~l~~H~~~~   92 (103)
                      +.|..|+.|+.+..++.+|.+|+-.-
T Consensus        22 ~qpatcpic~avirqsrnlrrhlel~   47 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRHLELR   47 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            44555666666666666666555543

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0049  Score=23.58  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=12.8

Q ss_pred             eeeCCCCCcccCchhHHHHHhh
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      |.|..||+.|.....+.+|-..
T Consensus         5 fvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           5 FVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             EECSSSCCEESCHHHHHHHHHH
T ss_pred             eeecccccchhcchHHHHHhhh
Confidence            5666666666665555555433

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.74  E-value=0.005  Score=21.95  Aligned_cols=20  Identities=25%  Similarity=0.336  Sum_probs=15.6

Q ss_pred             CCCccccCcHHHHHHHHhhC
Q psy7454          74 YCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        74 ~C~~~f~~~~~l~~H~~~~~   93 (103)
                      .|++.|.....|+.|+-+|+
T Consensus         8 ~c~kafkkhnqlkvhqf~ht   27 (28)
T d2j7ja1           8 NCGKAFKKHNQLKVHQFSHT   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHHHHH
T ss_pred             CchHHHhhccceEEEeeccc
Confidence            48888888888888877765

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.69  E-value=0.0033  Score=23.84  Aligned_cols=21  Identities=19%  Similarity=0.459  Sum_probs=11.8

Q ss_pred             eeCCCCCccccCcHHHHHHHH
Q psy7454          70 YPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      |.|.-||-.|.+.+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            455555555555555555543

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0063  Score=21.98  Aligned_cols=20  Identities=20%  Similarity=0.293  Sum_probs=16.2

Q ss_pred             CCCccccCcHHHHHHHHhhC
Q psy7454          74 YCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        74 ~C~~~f~~~~~l~~H~~~~~   93 (103)
                      -|++.|+..+.+..|+.+|.
T Consensus         8 gC~K~Frd~saMRKHlhtHG   27 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTHG   27 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGGS
T ss_pred             cHHHHhhchHHHHHHhhccC
Confidence            48888888888888888775

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.52  E-value=0.01  Score=24.55  Aligned_cols=22  Identities=41%  Similarity=0.810  Sum_probs=11.9

Q ss_pred             CCCeecCCCCccccCchHHHHH
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      +.|-.|+.|+.....+.+|.+|
T Consensus        22 ~qpatcpic~avirqsrnlrrh   43 (54)
T d1yuja_          22 EQPATCPICYAVIRQSRNLRRH   43 (54)
T ss_dssp             SCCEECTTTCCEESSHHHHHHH
T ss_pred             cCCCCCchHHHHHHHHHHHHHH
Confidence            4455555555555555555555

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0023  Score=29.03  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=20.5

Q ss_pred             CCceeeCCCCCcccCchhHHHHHhh
Q psy7454          10 RYKYVCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        10 ~~~~~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      ...|-|..|++.|.+...|..|+++
T Consensus        13 ~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          13 GGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCEEecccccCccCCHHHHHHHHcc
Confidence            3458899999999999999988754

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.28  E-value=0.012  Score=22.51  Aligned_cols=28  Identities=21%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             CCCCeeCCCCCccccCcHHHHHHHHhhC
Q psy7454          66 GQKPYPCRYCDYKARETQALKVHTKRYH   93 (103)
Q Consensus        66 ~~~~~~c~~C~~~f~~~~~l~~H~~~~~   93 (103)
                      ++..|.|..|.+.+...+++-+|..+.+
T Consensus         5 g~~~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           5 GEHTYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             ETTEEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             cCcEEEeehhhHHHHHHHHHHHHHHhhc
Confidence            3446788888888888888888876644

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.22  E-value=0.0069  Score=23.92  Aligned_cols=11  Identities=18%  Similarity=0.482  Sum_probs=6.1

Q ss_pred             CceeeCCCCCc
Q psy7454          11 YKYVCFACKFY   21 (103)
Q Consensus        11 ~~~~C~~C~~~   21 (103)
                      ..|.|++||..
T Consensus         4 ~~~vC~vCGyi   14 (36)
T d1yuza2           4 KFHLCPICGYI   14 (36)
T ss_dssp             CEEECSSSCCE
T ss_pred             CEEECCCCCCE
Confidence            45666666633

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.14  E-value=0.014  Score=21.57  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=18.6

Q ss_pred             CCeeCC--CCCccccCcHHHHHHHHhhCCC
Q psy7454          68 KPYPCR--YCDYKARETQALKVHTKRYHPK   95 (103)
Q Consensus        68 ~~~~c~--~C~~~f~~~~~l~~H~~~~~~~   95 (103)
                      +.|.|.  .|+..|...--|..|+-.|+||
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhhhcCC
Confidence            345664  3777777666777777777765

>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=94.56  E-value=0.014  Score=23.19  Aligned_cols=29  Identities=0%  Similarity=-0.151  Sum_probs=14.7

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCcc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFK   49 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~   49 (103)
                      +.|+.||..|        |.........-.|+.||..
T Consensus         3 ~vc~~cG~~Y--------h~~~~pPk~~g~CD~cg~~   31 (37)
T d2ak3a2           3 WIHPGSGRVY--------NIEFNPPKTMGIDDLTGEP   31 (37)
T ss_dssp             EEETTTTEEE--------ETTTBCCSSTTBCTTTCCB
T ss_pred             eeeCCcCChh--------hhccCCccccCCccCCCCc
Confidence            4566666555        2233334444456666643

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.0061  Score=27.59  Aligned_cols=23  Identities=22%  Similarity=0.316  Sum_probs=18.1

Q ss_pred             CeeCCCCCccccCcHHHHHHHHh
Q psy7454          69 PYPCRYCDYKARETQALKVHTKR   91 (103)
Q Consensus        69 ~~~c~~C~~~f~~~~~l~~H~~~   91 (103)
                      .|-|..|++.|.+...|..|.++
T Consensus        15 qfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          15 LHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTC
T ss_pred             EEecccccCccCCHHHHHHHHcc
Confidence            46788888888888888888653

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.50  E-value=0.011  Score=23.48  Aligned_cols=10  Identities=30%  Similarity=0.989  Sum_probs=5.7

Q ss_pred             ceeeCCCCCc
Q psy7454          12 KYVCFACKFY   21 (103)
Q Consensus        12 ~~~C~~C~~~   21 (103)
                      .|.|+.||..
T Consensus         5 ~~~C~vCG~i   14 (37)
T d1nnqa2           5 VYICPICGYT   14 (37)
T ss_dssp             EEECTTTCCE
T ss_pred             EEECCCCCCE
Confidence            4566666643

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.018  Score=25.57  Aligned_cols=39  Identities=15%  Similarity=0.432  Sum_probs=27.9

Q ss_pred             CCCCCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCcc
Q psy7454          36 LGEKPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYK   78 (103)
Q Consensus        36 ~~~~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~   78 (103)
                      +....|.|+.|++.|.....+    +......-.|.|..|+..
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~----~L~d~~~~~F~C~~C~~e   48 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEAN----QLFDPMTGTFRCTFCHTE   48 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHH----HHEETTTTEEBCSSSCCB
T ss_pred             ccCCceECCCCCCCcchhhHH----HhcCcCCCeEEecCCCCE
Confidence            345679999999999775543    334555567999999854

>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.39  E-value=0.031  Score=21.81  Aligned_cols=29  Identities=28%  Similarity=0.451  Sum_probs=15.4

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCcc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFK   49 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~   49 (103)
                      ..|+.||..|-        .........-.|+.||..
T Consensus         3 r~C~~CG~~Yh--------~~~~pPk~~g~CD~cG~~   31 (35)
T d1zina2           3 RICRNCGATYH--------LIFHPPAKPGVCDKCGGE   31 (35)
T ss_dssp             EEETTTCCEEE--------TTTBCCSSTTBCTTTCCB
T ss_pred             cCCcCcCchhc--------cccCCCCCCCcCCCCCCC
Confidence            45667766652        233334444566666643

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.029  Score=21.66  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             eeCCCCCccccCcHHHHHHHHhhCC
Q psy7454          70 YPCRYCDYKARETQALKVHTKRYHP   94 (103)
Q Consensus        70 ~~c~~C~~~f~~~~~l~~H~~~~~~   94 (103)
                      ..|.+|.+.|.+..++.+|+...+.
T Consensus         4 ltclecmrtfkssfsiwrhqvevhn   28 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQVEVHN   28 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             ccHHHHHHHHHHHHHHHHhhheecc
Confidence            4688888888888888888776543

>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.73  E-value=0.048  Score=21.67  Aligned_cols=10  Identities=10%  Similarity=-0.250  Sum_probs=5.4

Q ss_pred             eeeCCCCCcc
Q psy7454          13 YVCFACKFYT   22 (103)
Q Consensus        13 ~~C~~C~~~f   22 (103)
                      ..|+.||..|
T Consensus         3 r~C~~cG~~Y   12 (38)
T d1akya2           3 LIHPASGRSY   12 (38)
T ss_dssp             EECTTTCCEE
T ss_pred             cCCcCccchh
Confidence            3455565554

>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Bacillus globisporus [TaxId: 1459]

Probab=92.58  E-value=0.04  Score=21.46  Aligned_cols=29  Identities=14%  Similarity=0.105  Sum_probs=15.1

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCcc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFK   49 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~   49 (103)
                      ..|+.||..|-        .........-.|+.||..
T Consensus         3 ~~C~~CG~~Yh--------~~~~pPk~~g~CD~cg~~   31 (35)
T d1s3ga2           3 RICKVCGTSYH--------LLFNPPQVEGKCDKDGGE   31 (35)
T ss_dssp             EEETTTCCEEE--------TTTBCCSBTTBCTTTCCB
T ss_pred             cCCcCcCchhc--------cccCCCCCCCccCCCCCC
Confidence            45667776652        223333444456666643

>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.056  Score=21.03  Aligned_cols=29  Identities=7%  Similarity=-0.144  Sum_probs=15.3

Q ss_pred             eeeCCCCCcccCchhHHHHHhhcCCCCCeecCCCCcc
Q psy7454          13 YVCFACKFYTYNTGNIKRHLGMHLGEKPFTCNMCEFK   49 (103)
Q Consensus        13 ~~C~~C~~~f~~~~~l~~h~~~h~~~~~~~c~~C~~~   49 (103)
                      ..|+.||..|        |.........-.|+.||..
T Consensus         3 r~c~~cG~~Y--------h~~~~PPk~~g~CD~cg~~   31 (35)
T d1e4va2           3 RVHAPSGRVY--------HVKFNPPKVEGKDDVTGEE   31 (35)
T ss_dssp             EEETTTTEEE--------ETTTBCCSSTTBCTTTCCB
T ss_pred             cCCcCcCChh--------hhccCccccCCcccCCCCE
Confidence            3566666665        2333344444466666643

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.14  Score=22.61  Aligned_cols=24  Identities=29%  Similarity=0.616  Sum_probs=15.5

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhc
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMH   35 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h   35 (103)
                      .|.|..|+..|.....|..|...|
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~~h   41 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLNIH   41 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHHhc
Confidence            466777776666666666665554

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.36  E-value=0.12  Score=18.60  Aligned_cols=19  Identities=26%  Similarity=0.209  Sum_probs=15.1

Q ss_pred             CCCCccccCcHHHHHHHHh
Q psy7454          73 RYCDYKARETQALKVHTKR   91 (103)
Q Consensus        73 ~~C~~~f~~~~~l~~H~~~   91 (103)
                      +-||+.|.....|..|.+-
T Consensus         6 ~gc~kifsnrqylnhh~ky   24 (30)
T d2dlka1           6 PGCGRIFSNRQYLNHHKKY   24 (30)
T ss_dssp             TTTCCEESSHHHHHHHHHH
T ss_pred             CCchhhhccHHHHHhHHHH
Confidence            4689999998888877664

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.086  Score=23.30  Aligned_cols=27  Identities=30%  Similarity=0.746  Sum_probs=16.9

Q ss_pred             CCCeecCCCCccccCchHHHHHHHHhcC
Q psy7454          38 EKPFTCNMCEFKCRDNRTLKAHHINIHT   65 (103)
Q Consensus        38 ~~~~~c~~C~~~~~~~~~l~~h~~~~h~   65 (103)
                      ...|.|..|...|.+...|..| +..|+
T Consensus        16 s~~yQC~HCd~K~~s~~el~~h-l~~hn   42 (75)
T d1x6fa1          16 NSTYQCKHCDSKLQSTAELTSH-LNIHN   42 (75)
T ss_dssp             CSCEECSSSCCEESSHHHHHHH-HHHHH
T ss_pred             CceeeechhHHHHhhHHHHHHH-HHhcc
Confidence            3446666676666666666665 55555

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=87.20  E-value=0.35  Score=17.35  Aligned_cols=19  Identities=26%  Similarity=0.537  Sum_probs=11.5

Q ss_pred             CCCccccCcHHHHHHHHhh
Q psy7454          74 YCDYKARETQALKVHTKRY   92 (103)
Q Consensus        74 ~C~~~f~~~~~l~~H~~~~   92 (103)
                      .|+..|...++++.|.-..
T Consensus         9 ~cdl~fttkanmkkhfnrf   27 (31)
T d1tf3a3           9 GCDLRFTTKANMKKHFNRF   27 (31)
T ss_dssp             SCCCEESSHHHHHHHHHHH
T ss_pred             CcceEEeehHHHHHHHhhh
Confidence            4666666666666665443

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.42  Score=18.12  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=13.9

Q ss_pred             CCeeCCCCCccccCcHHHHHHHH
Q psy7454          68 KPYPCRYCDYKARETQALKVHTK   90 (103)
Q Consensus        68 ~~~~c~~C~~~f~~~~~l~~H~~   90 (103)
                      +-|.|..|-+-..+...+.+|+.
T Consensus         6 kLyiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           6 KLYLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHH
T ss_pred             eeeeehhhhhhhCCHHHHHHHHH
Confidence            34566666666666666666654

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.56  E-value=0.4  Score=18.35  Aligned_cols=21  Identities=14%  Similarity=0.237  Sum_probs=16.1

Q ss_pred             eeCCCCCcccCchhHHHHHhh
Q psy7454          14 VCFACKFYTYNTGNIKRHLGM   34 (103)
Q Consensus        14 ~C~~C~~~f~~~~~l~~h~~~   34 (103)
                      -|..|+-.|.....+.+|...
T Consensus        10 YC~~CDI~Fn~~~T~~aHKk~   30 (36)
T d1fu9a_          10 YCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             EETTTTEECSSHHHHHHHHHH
T ss_pred             HHhhCCceehhHHHHHHHHHh
Confidence            488888888888888888543

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.42  E-value=0.81  Score=22.86  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=12.7

Q ss_pred             CCeecCCCCccccCchHHHHH
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAH   59 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h   59 (103)
                      .+.+|..|...|.....+..|
T Consensus        14 ~~~~CLFCd~~f~s~~~~l~H   34 (121)
T d1wira_          14 QHTPCLFCDRLFASAEETFSH   34 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHH
T ss_pred             ccceecccCCccCCHHHHHHH
Confidence            445566666666666666665

>d2czra1 c.52.4.1 (A:1-218) TBP-interacting protein {Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: TBP-interacting protein-like
family: TBP-interacting protein-like
domain: TBP-interacting protein
species: Thermococcus kodakaraensis [TaxId: 311400]

Probab=82.51  E-value=0.35  Score=25.72  Aligned_cols=24  Identities=33%  Similarity=0.567  Sum_probs=19.5

Q ss_pred             ceeeCCCCCcccCchhHHHHHhhcC
Q psy7454          12 KYVCFACKFYTYNTGNIKRHLGMHL   36 (103)
Q Consensus        12 ~~~C~~C~~~f~~~~~l~~h~~~h~   36 (103)
                      .|+|..||+- ....+|.+|++.|.
T Consensus       146 FYKCe~CgKY-vDie~~~~H~k~HG  169 (218)
T d2czra1         146 FYKCEECGKY-VDIENLEAHLREHG  169 (218)
T ss_dssp             EEECTTTCCE-EEGGGHHHHHHTTT
T ss_pred             EeehhhcCce-ecHHHHHHHHHHcC
Confidence            4899999865 56788999999874

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.38  E-value=0.71  Score=22.43  Aligned_cols=29  Identities=28%  Similarity=0.592  Sum_probs=18.5

Q ss_pred             CCeecCCCCccccCchHHHHHHHHhcCCCCCeeCCCCCccc
Q psy7454          39 KPFTCNMCEFKCRDNRTLKAHHINIHTGQKPYPCRYCDYKA   79 (103)
Q Consensus        39 ~~~~c~~C~~~~~~~~~l~~h~~~~h~~~~~~~c~~C~~~f   79 (103)
                      .|-.|..||..|..            --.+|-.|+.|....
T Consensus        66 ~Pp~CrkCGfvFr~------------~~kkPSRCP~CKSE~   94 (105)
T d2gmga1          66 KPAQCRKCGFVFKA------------EINIPSRCPKCKSEW   94 (105)
T ss_dssp             CCCBBTTTCCBCCC------------CSSCCSSCSSSCCCC
T ss_pred             eChhhhhcCCeecc------------cCCCCCCCCCCCCcc
Confidence            45678888887732            024566888887543