Psyllid ID: psy7477

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
Protein Sequence
ALQIPTVSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTLSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDSVCFPN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEcHHHHHHHHHHccccccEEEEEEccccccEEEccEEccccccccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEcccccccccccEEccccccccEEEEEccEEEEEccccHHHccccEEEEEccccccccEEccccccccccccccccccccccccccccccEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccccccccccccccEEEcHHHHHHHHHHHHccccEEEEEEcccccccEEcEEEccccccccEEEEcccEEEEEEEcccccccccccccccccccEEEcHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEccccccccEEEEcccEEEEEcccHHHHEcccEEEEcHHccccEEEEEEccccccccccccccccccccccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
alqiptvspystsspsekpvsastlkdLVIHDSCIKKLKEISTDGSFLRIIVEgggcsgfqykfeldtqvsdedrvyeksgckiptlspystsspsekpvsastlkdLVIHDSCIKKLKEISTDGSFLRIIVEgggcsgfqykfeldtqvsdedrvyEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAfqisnnpqveqgnltkgdhfispsnitrirprlsyrispgidsvcfpn
Flexible Loop (DISEMBL)
alqiptvspystsspsekpvsastlkdlVIHDSCIKKLkeistdgsfLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSgckiptlspystsspsekpvsastlkdlVIHDSCIKKLkeistdgsfLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGnltkgdhfispsnitrirprlsyrispgidsvcfpn
Low Complexity Region (SEG)
ALQIptvspystsspsEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIptlspystsspsEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDSVCFPN
Disordered region (IsUnstruct)
************************LKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVS****VY***************************LKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISN***********GDHFISPSNITRIRPRLSYRISPGIDSV****
Disordered Region (DISOPRED)
*****************************IHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTLSPYSTSS*************LVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDSVCFP*
Disordered Region (DISEMBL)
**********************STLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL***************STLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDSVCFPN
Disordered Region (DISPRO)
*************************KDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTLSPYS**************KDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFIS*SNITRIRPRLSYRISPGIDSVCFPN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ALQIPTVSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTLSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDSVCFPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	237	2.2.26 [Sep-21-2011]
Q2TBG7	152	Iron-sulfur cluster assem	yes	N/A	0.388	0.605	0.565	5e-27
Q5R788	154	Iron-sulfur cluster assem	yes	N/A	0.388	0.597	0.554	5e-27
Q86U28	154	Iron-sulfur cluster assem	yes	N/A	0.388	0.597	0.554	5e-27
Q9DCB8	154	Iron-sulfur cluster assem	yes	N/A	0.388	0.597	0.554	7e-27
Q8LCY2	158	Iron-sulfur assembly prot	yes	N/A	0.392	0.588	0.479	3e-21
Q54P40	209	Iron-sulfur cluster assem	yes	N/A	0.379	0.430	0.406	5e-17
O43045	205	Iron-sulfur assembly prot	yes	N/A	0.388	0.448	0.406	1e-14
Q7VUW2	123	Putative iron-sulfur clus	yes	N/A	0.367	0.707	0.406	6e-13
Q7W3Z5	123	Putative iron-sulfur clus	yes	N/A	0.367	0.707	0.406	6e-13
Q7WFC7	123	Putative iron-sulfur clus	yes	N/A	0.367	0.707	0.406	6e-13

>sp|Q2TBG7|ISCA2_BOVIN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Bos taurus GN=ISCA2 PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 73/92 (79%)

Query: 110 IHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQT 169
           + DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+EK G +VV+D  
Sbjct: 50  LTDSCVQRLLEITEGSEFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGARVVVDSD 109

Query: 170 SLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct: 110 SLAFVKGAHVDFSQELIRSSFQVLNNPQAQQG 141

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
Bos taurus (taxid: 9913)

>sp|Q5R788|ISCA2_PONAB Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Pongo abelii GN=ISCA2 PE=2 SV=1

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 73/92 (79%)

Query: 110 IHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQT 169
           + DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  
Sbjct: 52  LTDSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSD 111

Query: 170 SLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct: 112 SLAFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Pongo abelii (taxid: 9601)

>sp|Q86U28|ISCA2_HUMAN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2

 Score =  121 bits (303), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 73/92 (79%)

Query: 110 IHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQT 169
           + DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  
Sbjct: 52  LTDSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSD 111

Query: 170 SLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct: 112 SLAFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Homo sapiens (taxid: 9606)

>sp|Q9DCB8|ISCA2_MOUSE Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Mus musculus GN=Isca2 PE=2 SV=2

 Score =  120 bits (302), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 73/92 (79%)

Query: 110 IHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQT 169
           + DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  
Sbjct: 52  LTDSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSD 111

Query: 170 SLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct: 112 SLAFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Mus musculus (taxid: 10090)

>sp|Q8LCY2|ISAM2_ARATH Iron-sulfur assembly protein IscA-like 2, mitochondrial OS=Arabidopsis thaliana GN=At5g03905 PE=2 SV=2

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/98 (47%), Positives = 71/98 (72%), Gaps = 5/98 (5%)

Query: 109 VIH--DSCIKKLKEIST---DGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
           V+H  D+CI+++KE+ +   +   LR+ VE GGCSGFQYKFELD + + +DRV+EK+G K
Sbjct: 50  VVHLSDNCIRRMKELQSSEPEKKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVK 109

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           +V+D  S + V+G+ I+Y +ELIR+AF ++ NP    G
Sbjct: 110 LVVDNVSYDLVKGATIDYEEELIRAAFVVAVNPSAVGG 147

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|Q54P40|ISCA2_DICDI Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca2 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 70/96 (72%), Gaps = 6/96 (6%)

Query: 107 DLVIHDSCIKKLKEI-----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSG 161
           ++ + DSC+K+L  +     STD  FLR++V+ GGCSG+QY  +++ ++ D+D ++ ++G
Sbjct: 100 NITLTDSCVKELNSVQKKSDSTD-IFLRVMVDMGGCSGYQYIIKVENKLQDDDVLFIRNG 158

Query: 162 CKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQ 197
            KV+ID+ SLE ++GS+I+Y   L+RS+F +++NP 
Sbjct: 159 AKVIIDKISLEMMEGSIIDYETALMRSSFVVASNPN 194

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|O43045|ISA2_SCHPO Iron-sulfur assembly protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isa2 PE=3 SV=1

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 4/96 (4%)

Query: 108 LVIHDSCIKKLKEIST----DGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
           L + DS  K+L++I+     + S LR+ V+GGGC G+Q  F +D ++ + D V+ +   +
Sbjct: 98  LYVKDSAKKQLEKIAERKPEENSVLRVTVDGGGCHGYQVSFRMDNKIGNADTVFVRGKAR 157

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVE 199
           VV D  SL  + GS IEY  ELI S+FQ+ NNP+ +
Sbjct: 158 VVADNISLPLISGSEIEYTNELIGSSFQLLNNPRAK 193

Involved in the assembly of mitochondrial and cytoplasmic iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7VUW2|ERPA_BORPE Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=erpA PE=3 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 108 LVIHDSCIKKLKEI-STDGS---FLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
           LV  DS   K+K++ + +G+    LR+ V+GGGCSGFQY F  D  V+D+D V +K+G +
Sbjct: 18  LVFTDSAAAKVKDLLAEEGNPELKLRVFVQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQ 77

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISN 194
           +++D  S +Y+ G+ I+Y ++L  + F I N
Sbjct: 78  LLVDPMSFQYLVGAEIDYKEDLEGAQFVIRN 108

Required for insertion of 4Fe-4S clusters.

Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) (taxid: 257313)

>sp|Q7W3Z5|ERPA_BORPA Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=erpA PE=3 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 108 LVIHDSCIKKLKEI-STDGS---FLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
           LV  DS   K+K++ + +G+    LR+ V+GGGCSGFQY F  D  V+D+D V +K+G +
Sbjct: 18  LVFTDSAAAKVKDLLAEEGNPELKLRVFVQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQ 77

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISN 194
           +++D  S +Y+ G+ I+Y ++L  + F I N
Sbjct: 78  LLVDPMSFQYLVGAEIDYKEDLEGAQFVIRN 108

Required for insertion of 4Fe-4S clusters.

Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) (taxid: 257311)

>sp|Q7WFC7|ERPA_BORBR Putative iron-sulfur cluster insertion protein ErpA OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=erpA PE=3 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/91 (40%), Positives = 60/91 (65%), Gaps = 4/91 (4%)

Query: 108 LVIHDSCIKKLKEI-STDGS---FLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
           LV  DS   K+K++ + +G+    LR+ V+GGGCSGFQY F  D  V+D+D V +K+G +
Sbjct: 18  LVFTDSAAAKVKDLLAEEGNPELKLRVFVQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQ 77

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISN 194
           +++D  S +Y+ G+ I+Y ++L  + F I N
Sbjct: 78  LLVDPMSFQYLVGAEIDYKEDLEGAQFVIRN 108

Required for insertion of 4Fe-4S clusters.

Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (taxid: 257310)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
340720555	166	PREDICTED: iron-sulfur cluster assembly	0.468	0.668	0.622	9e-36
350414913	166	PREDICTED: iron-sulfur cluster assembly	0.468	0.668	0.605	5e-35
110763747	157	PREDICTED: iron-sulfur cluster assembly	0.502	0.757	0.564	5e-34
383860154	157	PREDICTED: iron-sulfur cluster assembly	0.485	0.732	0.573	6e-34
380028814	157	PREDICTED: iron-sulfur cluster assembly	0.502	0.757	0.564	1e-33
307191072	157	Iron-sulfur cluster assembly 2-like prot	0.485	0.732	0.565	2e-33
307203222	158	Iron-sulfur cluster assembly 2-like prot	0.396	0.594	0.680	6e-33
332020195	158	Iron-sulfur cluster assembly 2-like prot	0.400	0.601	0.673	8e-33
156542307	164	PREDICTED: iron-sulfur cluster assembly	0.455	0.658	0.583	2e-31
47230196	289	unnamed protein product [Tetraodon nigro	0.801	0.657	0.379	2e-30

>gi|340720555|ref|XP_003398700.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like [Bombus terrestris]

 Score =  155 bits (393), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 92/114 (80%), Gaps = 3/114 (2%)

Query: 91  STSSPSEKPVSASTLK---DLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELD 147
           ST S   K V+ STLK   D++I DSC+++LKEI+ D ++LR+ VEGGGCSGFQYKF+LD
Sbjct: 42  STDSLLNKTVTESTLKTENDIIITDSCVQRLKEITDDNAYLRVTVEGGGCSGFQYKFDLD 101

Query: 148 TQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           T +++ D+V++K G KVVID TSLEY++GS IEYH ELIRSAF+I+NNP  EQG
Sbjct: 102 TNINENDKVFQKDGAKVVIDTTSLEYIKGSTIEYHTELIRSAFRITNNPLAEQG 155

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414913|ref|XP_003490467.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like [Bombus impatiens]

 Score =  153 bits (387), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 91/114 (79%), Gaps = 3/114 (2%)

Query: 91  STSSPSEKPVSASTLK---DLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELD 147
           ST S   K V+ S LK   D++I DSC+++LKEI+ D ++LR+ +EGGGCSGFQYKF+LD
Sbjct: 42  STDSLLNKTVTESALKTENDIIITDSCVQRLKEITDDNAYLRVTIEGGGCSGFQYKFDLD 101

Query: 148 TQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           T +++ D+V++K G KVVID TSLEY++GS IEYH ELIRSAF+I+NNP  EQG
Sbjct: 102 TNINENDKVFQKDGAKVVIDTTSLEYIKGSTIEYHTELIRSAFRITNNPLAEQG 155

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110763747|ref|XP_001120329.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like [Apis mellifera]

 Score =  150 bits (378), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 96/124 (77%), Gaps = 5/124 (4%)

Query: 83  KIPTLSPYSTSSPS--EKPVSASTLKD---LVIHDSCIKKLKEISTDGSFLRIIVEGGGC 137
           ++ T   Y+TS+ S     +  ST+KD   ++I DSC+K+LKEI+ D ++LR+ VEGGGC
Sbjct: 23  RLLTSQWYNTSTVSLLNNTLIDSTVKDKNDIIITDSCVKRLKEITDDNAYLRVTVEGGGC 82

Query: 138 SGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQ 197
           SGFQYKF+LDT +++ D+V++K G KVVID TSLEY++GS IE+H ELIRSAF+I+NNP 
Sbjct: 83  SGFQYKFDLDTNINENDKVFQKDGAKVVIDSTSLEYIKGSTIEFHTELIRSAFRITNNPL 142

Query: 198 VEQG 201
            EQG
Sbjct: 143 AEQG 146

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860154|ref|XP_003705556.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like [Megachile rotundata]

 Score =  150 bits (378), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/115 (57%), Positives = 89/115 (77%)

Query: 87  LSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFEL 146
           +S  S+ S      +  T  D++I DSC+K+LKEI+ D ++LR+ VEGGGCSGFQYKF+L
Sbjct: 32  VSAVSSLSNMSTEAAVKTDNDIIITDSCVKRLKEITDDNAYLRVTVEGGGCSGFQYKFDL 91

Query: 147 DTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           D  V+++D+V++K G KVVID TSLEY++G+ IEYH ELIRSAF+I+NNP  EQG
Sbjct: 92  DVNVNEDDKVFQKDGVKVVIDSTSLEYIKGATIEYHTELIRSAFRITNNPLAEQG 146

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028814|ref|XP_003698081.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like [Apis florea]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 96/124 (77%), Gaps = 5/124 (4%)

Query: 83  KIPTLSPYSTSSP--SEKPVSASTLK---DLVIHDSCIKKLKEISTDGSFLRIIVEGGGC 137
           ++ T   Y+TS+     K +  ST+K   D++I DSC+K+LKEI+ D ++LR+ VEGGGC
Sbjct: 23  RLLTSQWYNTSTVPLLNKTLIDSTVKGKNDIIITDSCVKRLKEITDDNAYLRVTVEGGGC 82

Query: 138 SGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQ 197
           SGFQYKF+LDT +++ D+V++K G KVVID TSLEY++GS IE+H ELIRSAF+I+NNP 
Sbjct: 83  SGFQYKFDLDTNINENDKVFQKDGAKVVIDSTSLEYIKGSTIEFHTELIRSAFRITNNPL 142

Query: 198 VEQG 201
            EQG
Sbjct: 143 AEQG 146

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191072|gb|EFN74812.1| Iron-sulfur cluster assembly 2-like protein, mitochondrial [Camponotus floridanus]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 91/115 (79%)

Query: 87  LSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFEL 146
           +S   +S  +   V+     DL+I +SC+K+LKEI++DG++LR++VEGGGCSGFQYKF+L
Sbjct: 31  ISIVRSSRETSTNVAVKAEDDLIISESCVKRLKEIASDGTYLRVVVEGGGCSGFQYKFDL 90

Query: 147 DTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           D  + ++D+V++K G KV+ID TSLEYV+GS IEYH ELIRSAF+I+NNP  E+G
Sbjct: 91  DPNIQEDDKVFQKDGTKVIIDSTSLEYVKGSTIEYHTELIRSAFRITNNPLAEKG 145

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203222|gb|EFN82377.1| Iron-sulfur cluster assembly 2-like protein, mitochondrial [Harpegnathos saltator]

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 64/94 (68%), Positives = 80/94 (85%)

Query: 108 LVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVID 167
           L+I DSCIK+LKEI+ DG+ LR+ VEGGGCSGFQYKF LD+ V ++DR+++K G KV+ID
Sbjct: 53  LIISDSCIKRLKEIAVDGAGLRVTVEGGGCSGFQYKFNLDSNVHEDDRIFQKDGTKVIID 112

Query: 168 QTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
            TSLEYV+GS IE+H ELIRSAF+I+NNP  EQG
Sbjct: 113 STSLEYVKGSTIEFHTELIRSAFRITNNPLAEQG 146

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020195|gb|EGI60639.1| Iron-sulfur cluster assembly 2-like protein, mitochondrial [Acromyrmex echinatior]

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/95 (67%), Positives = 81/95 (85%)

Query: 107 DLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVI 166
           DL+I DSC+K+LKEI+ D + LRIIVEGGGCSGFQYKF+LD  + ++DR+++K G KV+I
Sbjct: 52  DLIISDSCVKRLKEIADDSTCLRIIVEGGGCSGFQYKFDLDPNIQEDDRIFQKDGTKVII 111

Query: 167 DQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           D TSLEYV+GS IE+H ELIRSAF+I+NNP  EQG
Sbjct: 112 DSTSLEYVKGSTIEFHTELIRSAFRITNNPLAEQG 146

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542307|ref|XP_001599351.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like isoform 1 [Nasonia vitripennis] gi|345492611|ref|XP_003426892.1| PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial-like isoform 2 [Nasonia vitripennis]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 87/108 (80%)

Query: 94  SPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDE 153
           + S K  S++   +++I DSC+K+LKEI+ +GS LR+ VEGGGCSGFQYKF LD+ ++ +
Sbjct: 45  NSSTKVASSACEDEILISDSCVKRLKEITEEGSCLRVTVEGGGCSGFQYKFNLDSSINKD 104

Query: 154 DRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
           D+V++K G K+VID TSLEY++GS IEYH ELIRSAF+I++NP  EQG
Sbjct: 105 DKVFQKDGAKIVIDSTSLEYIKGSTIEYHTELIRSAFRITDNPLAEQG 152

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47230196|emb|CAG10610.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 120/232 (51%), Gaps = 42/232 (18%)

Query: 11  STSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQV 70
           STS+     V   +   + + +SC+K  KEI   G +LRI VEGGGCSGFQYKF +    
Sbjct: 48  STSAQENLDVPPPSEDKIHLTESCVKA-KEILERGEYLRIHVEGGGCSGFQYKFSVVDDK 106

Query: 71  SDEDRVYEKSGCKIPT--------------------LSPYSTSSPSE--KPVSASTLKDL 108
           ++EDRV+EK G  +                       S + +  PSE   PV       L
Sbjct: 107 TNEDRVFEKRGVSVIVDPDSLEFVKGATVDYTNELIRSSFQSLRPSEVVSPVRVEAFLLL 166

Query: 109 VI----------HDSCIK---------KLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQ 149
                       H  C++          + EI   G +LRI VEGGGCSGFQYKF +   
Sbjct: 167 GCVSLPGSGAHHHLPCVQCHLRCDVNNSVLEILERGEYLRIHVEGGGCSGFQYKFSVVDD 226

Query: 150 VSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
            ++EDRV+EK G  V++D  SLE+V+G+ ++Y  ELIRS+FQ+  NPQ + G
Sbjct: 227 KTNEDRVFEKRGVSVIVDPDSLEFVKGATVDYTNELIRSSFQVLRNPQADHG 278

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	237
FB|FBgn0039205	139	CG13623 [Drosophila melanogast	0.426	0.726	0.534	1.2e-26
UNIPROTKB|Q2TBG7	152	ISCA2 "Iron-sulfur cluster ass	0.388	0.605	0.574	1.9e-26
RGD|1563216	154	RGD1563216 "similar to HESB li	0.379	0.584	0.577	1.9e-26
UNIPROTKB|E1C786	170	ISCA2 "Uncharacterized protein	0.426	0.594	0.524	4e-26
UNIPROTKB|F1S3F3	154	ISCA2 "Uncharacterized protein	0.388	0.597	0.563	4e-26
RGD|1309506	154	Isca2 "iron-sulfur cluster ass	0.379	0.584	0.566	4e-26
UNIPROTKB|Q86U28	154	ISCA2 "Iron-sulfur cluster ass	0.379	0.584	0.566	5.2e-26
MGI|MGI:1921566	154	Isca2 "iron-sulfur cluster ass	0.379	0.584	0.566	5.2e-26
UNIPROTKB|J9P4R1	154	ISCA2 "Uncharacterized protein	0.388	0.597	0.563	6.6e-26
TAIR|locus:505006581	158	AT5G03905 [Arabidopsis thalian	0.468	0.702	0.435	1.1e-21

FB|FBgn0039205 CG13623 [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 54/101 (53%), Positives = 76/101 (75%)

Query:   101 SASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKS 160
             SA+    + + +SC+K+L+EI  DGSFLR+ VEGGGCSGFQYKF+LD Q++++DR + ++
Sbjct:    28 SANPELSVQVSESCLKRLREICVDGSFLRVTVEGGGCSGFQYKFDLDKQLNEDDRQFGEA 87

Query:   161 GCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
               KVVID  SLEY  G+ ++YH ELIR+ F++  NP  EQG
Sbjct:    88 EAKVVIDTVSLEYCSGATVDYHSELIRAGFRMVANPLAEQG 128

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|Q2TBG7 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 54/94 (57%), Positives = 74/94 (78%)

Query:   110 IH--DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVID 167
             IH  DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+EK G +VV+D
Sbjct:    48 IHLTDSCVQRLLEITEGSEFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEKGGARVVVD 107

Query:   168 QTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
               SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   108 SDSLAFVKGAHVDFSQELIRSSFQVLNNPQAQQG 141

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

RGD|1563216 RGD1563216 "similar to HESB like domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 52/90 (57%), Positives = 72/90 (80%)

Query:   112 DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSL 171
             DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  SL
Sbjct:    54 DSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSL 113

Query:   172 EYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
              YV+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   114 AYVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|E1C786 ISCA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 53/101 (52%), Positives = 78/101 (77%)

Query:   101 SASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKS 160
             S S+   + + +SC+K+L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ 
Sbjct:    59 SDSSEGQVYLSESCVKRLLEIAEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQG 118

Query:   161 GCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
             G +VV+D  SL +V+GS++++ QELIRS+FQ+ +NPQ E+G
Sbjct:   119 GARVVVDVDSLAFVKGSMVDFSQELIRSSFQVVSNPQAEKG 159

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1S3F3 ISCA2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 53/94 (56%), Positives = 74/94 (78%)

Query:   110 IH--DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVID 167
             IH  DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D
Sbjct:    50 IHLTDSCVQRLLEITEGSEFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVD 109

Query:   168 QTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
               SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   110 SDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

GO:0005739 "mitochondrion" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

RGD|1309506 Isca2 "iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query:   112 DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSL 171
             DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  +L
Sbjct:    54 DSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDNL 113

Query:   172 EYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
              YV+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   114 AYVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

GO:0005739 "mitochondrion" evidence=ISO

UNIPROTKB|Q86U28 ISCA2 "Iron-sulfur cluster assembly 2 homolog, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query:   112 DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSL 171
             DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  SL
Sbjct:    54 DSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSL 113

Query:   172 EYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
              +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   114 AFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1921566 Isca2 "iron-sulfur cluster assembly 2 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 51/90 (56%), Positives = 72/90 (80%)

Query:   112 DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSL 171
             DSC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G +VV+D  SL
Sbjct:    54 DSCVQRLLEITEGSEFLRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSL 113

Query:   172 EYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
              +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   114 AFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

GO:0003674 "molecular_function" evidence=ND

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|J9P4R1 ISCA2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 53/94 (56%), Positives = 74/94 (78%)

Query:   110 IH--DSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVID 167
             IH  +SC+++L EI+    FLR+ VEGGGCSGFQYKF LDT ++ +DRV+E+ G KVV+D
Sbjct:    50 IHLTNSCVQRLLEITEGSEFLRLEVEGGGCSGFQYKFSLDTVINPDDRVFEQGGAKVVVD 109

Query:   168 QTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
               SL +V+G+ +++ QELIRS+FQ+ NNPQ +QG
Sbjct:   110 SDSLAFVKGAQVDFSQELIRSSFQVLNNPQAQQG 143

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

TAIR|locus:505006581 AT5G03905 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 51/117 (43%), Positives = 79/117 (67%)

Query:    98 KPVSASTLKDLV-IHDSCIKKLKEIST---DGSFLRIIVEGGGCSGFQYKFELDTQVSDE 153
             +P S+S   D+V + D+CI+++KE+ +   +   LR+ VE GGCSGFQYKFELD + + +
Sbjct:    42 QPESSSN--DVVHLSDNCIRRMKELQSSEPEKKMLRLGVETGGCSGFQYKFELDNRTNPD 99

Query:   154 DRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQGNLTKGDHFI 210
             DRV+EK+G K+V+D  S + V+G+ I+Y +ELIR+AF ++ NP    G   K    +
Sbjct:   100 DRVFEKNGVKLVVDNVSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMV 156

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R788	ISCA2_PONAB	No assigned EC number	0.5543	0.3881	0.5974	yes	N/A
Q86U28	ISCA2_HUMAN	No assigned EC number	0.5543	0.3881	0.5974	yes	N/A
Q2TBG7	ISCA2_BOVIN	No assigned EC number	0.5652	0.3881	0.6052	yes	N/A
Q7VQH5	ERPA_BLOFL	No assigned EC number	0.5074	0.2784	0.5546	yes	N/A
Q9DCB8	ISCA2_MOUSE	No assigned EC number	0.5543	0.3881	0.5974	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	237
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	2e-29
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	3e-27
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	2e-23
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	2e-21
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	8e-19
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	1e-15
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	8e-13
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	5e-12
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	2e-11
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	2e-11
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	7e-11
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	1e-10
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	1e-07
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	2e-07
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	3e-04
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	4e-04

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score =  108 bits (270), Expect = 2e-29
 Identities = 51/117 (43%), Positives = 79/117 (67%), Gaps = 5/117 (4%)

Query: 85  PTLSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEI-----STDGSFLRIIVEGGGCSG 139
            + +    S+ S  P S+++L  + + D+CI++LKE+     S +   LR+ VE GGCSG
Sbjct: 32  SSSALKEASTSSSSPSSSASLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSG 91

Query: 140 FQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNP 196
           FQY FELD + + +DRV+EK G K+V+D  S ++V+G+ ++Y +ELIRSAF +S NP
Sbjct: 92  FQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIRSAFVVSTNP 148

Length = 163

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  100 bits (251), Expect = 3e-27
 Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 112 DSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVID 167
           DS  K++K +          LR+ V+GGGCSG QY  E D + +++D V+E+ G KVV+D
Sbjct: 4   DSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVD 63

Query: 168 QTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQG 201
             SL Y+ GS I+Y +EL+ S F  + NP  +  
Sbjct: 64  PKSLPYLDGSEIDYVEELLGSGFTFT-NPNAKGT 96

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score = 90.7 bits (226), Expect = 2e-23
 Identities = 35/98 (35%), Positives = 60/98 (61%), Gaps = 5/98 (5%)

Query: 107 DLVIHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGC 162
            + + D+   ++K +      +   LR+ V+GGGCSGFQY  E D +++++D V+E+ G 
Sbjct: 4   MITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGV 63

Query: 163 KVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVEQ 200
           KVV+D  SL Y++G+ I+Y ++L+ S F    NP  + 
Sbjct: 64  KVVVDPKSLPYLEGTEIDYVEDLLGSGFTF-KNPNAKS 100

Length = 110

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 4/92 (4%)

Query: 107 DLVIHDSCIKKLKE-ISTDGSF---LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGC 162
            LV  D+   K+KE I  +G+    LR+ + GGGCSGFQY F  D QV+++D   EK G 
Sbjct: 9   PLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGV 68

Query: 163 KVVIDQTSLEYVQGSVIEYHQELIRSAFQISN 194
            +V+D  SL+Y+ G+ ++Y + L  S F I N
Sbjct: 69  TLVVDPMSLQYLVGAEVDYTEGLEGSRFVIKN 100

Length = 115

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score = 78.0 bits (193), Expect = 8e-19
 Identities = 33/81 (40%), Positives = 50/81 (61%)

Query: 115 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYV 174
           IKKL ++    + LRI V  GGCSGF Y    + +  + D V+E+ G  VV+D+ SL Y+
Sbjct: 11  IKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTVVVDEKSLPYL 70

Query: 175 QGSVIEYHQELIRSAFQISNN 195
           +G+ I++ +EL+ S F  SN 
Sbjct: 71  EGTEIDFVEELLGSGFTFSNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score = 71.5 bits (175), Expect = 1e-15
 Identities = 35/85 (41%), Positives = 54/85 (63%), Gaps = 5/85 (5%)

Query: 5   PTVSPYSTSSPSEKPVSASTLKDLVIHDSCIKKLKEI-----STDGSFLRIIVEGGGCSG 59
            + +    S+ S  P S+++L  + + D+CI++LKE+     S +   LR+ VE GGCSG
Sbjct: 32  SSSALKEASTSSSSPSSSASLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSG 91

Query: 60  FQYKFELDTQVSDEDRVYEKSGCKI 84
           FQY FELD + + +DRV+EK G K+
Sbjct: 92  FQYVFELDDKTNSDDRVFEKDGVKL 116

Length = 163

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 4/57 (7%)

Query: 32 DSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          DS  K++K +          LR+ V+GGGCSG QY  E D + +++D V+E+ G K+
Sbjct: 4  DSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKV 60

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 27/59 (45%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 27 DLVIHDSCIKKLKE-ISTDGSF---LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSG 81
           LV  D+   K+KE I  +G+    LR+ + GGGCSGFQY F  D QV+++D   EK G
Sbjct: 9  PLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQG 67

Length = 115

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score = 59.1 bits (144), Expect = 2e-11
 Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 27 DLVIHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGC 82
           + + D+   ++K +      +   LR+ V+GGGCSGFQY  E D +++++D V+E+ G 
Sbjct: 4  MITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGV 63

Query: 83 KI 84
          K+
Sbjct: 64 KV 65

Length = 110

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
           LR+ V+  GCSG  Y  E   + + +D V+E  G K+VID  SL+Y+ G+ +++ +E + 
Sbjct: 24  LRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKEGLN 83

Query: 188 SAFQISNNPQVE 199
             F+   NP V+
Sbjct: 84  EGFKF-TNPNVK 94

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 57.1 bits (138), Expect = 7e-11
 Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 115 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYV 174
           I++L     +   +R+ V+  GC+G +Y  +L ++   +D + E  G KV +   ++ ++
Sbjct: 13  IRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFI 72

Query: 175 QGSVIEYHQELIRSAFQISNNP 196
            G+ +++ +  +R  F+  NNP
Sbjct: 73  LGTQVDFVRTTLRQGFKF-NNP 93

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
           LR+ V   GCSG  Y  E   + + ED V+E  G KVV+D  SL+++ G+ +++ +E + 
Sbjct: 26  LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLN 85

Query: 188 SAFQISNNPQV 198
             F+   NP V
Sbjct: 86  EGFKF-TNPNV 95

Length = 107

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 19/50 (38%), Positives = 28/50 (56%)

Query: 35 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          IKKL ++    + LRI V  GGCSGF Y    + +  + D V+E+ G  +
Sbjct: 11 IKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTV 60

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 92  TSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVS 151
           T +P +      TL         I++L         +R+ V+  GC+GF Y  +  ++  
Sbjct: 7   TFNPDDFAWQGLTLTPAAAAH--IRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPD 64

Query: 152 DEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQVE 199
            +D V+E  G K+ +   ++ ++ G+ ++Y +E +   F+  +NP+ +
Sbjct: 65  KDDLVFEHDGAKLFVPLQAMPFIDGTEVDYVREGLNQIFKF-HNPKAQ 111

Length = 122

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 13/50 (26%), Positives = 27/50 (54%)

Query: 35 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          I++L     +   +R+ V+  GC+G +Y  +L ++   +D + E  G K+
Sbjct: 13 IRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKV 62

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 12 TSSPSEKPVSASTLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVS 71
          T +P +      TL         I++L         +R+ V+  GC+GF Y  +  ++  
Sbjct: 7  TFNPDDFAWQGLTLTPAAAAH--IRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPD 64

Query: 72 DEDRVYEKSGCKI 84
           +D V+E  G K+
Sbjct: 65 KDDLVFEHDGAKL 77

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	237
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	99.97
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	99.97
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	99.97
PLN03082	163	Iron-sulfur cluster assembly; Provisional	99.97
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	99.97
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	99.97
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	99.96
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.93
KOG1119|consensus	199		99.93
KOG1120|consensus	134		99.93
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.92
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.88
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	99.88
PLN03082	163	Iron-sulfur cluster assembly; Provisional	99.85
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	99.84
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.84
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.83
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	99.81
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	99.81
KOG1120|consensus	134		99.8
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	99.8
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	99.78
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.77
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.72
KOG1119|consensus	199		99.7
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	99.66
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.54
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.5
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	98.74
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	98.11
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	98.09
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	95.93
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	93.83
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	93.15

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-32  Score=211.89  Aligned_cols=105  Identities=33%  Similarity=0.653  Sum_probs=99.7

Q ss_pred             ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      .++|++|+.|++++++++++    +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++++||+.++.||+|++||
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID   81 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID   81 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence            46899999999999999974    36899999999999999999999988999999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      |+++..|++|+| +|||++.+||||+||++
T Consensus        82 yv~~~~g~~F~~-~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          82 YVEDLLGSGFTF-KNPNAKSSCGCGESFSV  110 (110)
T ss_pred             EEEcCcCCceEE-ECCCCCccccCCCCCCC
Confidence            999999999996 99999999999999963

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=99.97  E-value=1.2e-31  Score=209.46  Aligned_cols=107  Identities=36%  Similarity=0.622  Sum_probs=99.5

Q ss_pred             ccccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcE
Q psy7477         103 STLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSV  178 (237)
Q Consensus       103 ~~~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~  178 (237)
                      +..++|+||++|+++|+++++.    ..+|||+++++||+|++|+|.+++++.++|.+++.+|++|+||+++++||+|++
T Consensus         5 ~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~   84 (115)
T PRK13623          5 DVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAE   84 (115)
T ss_pred             ccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCE
Confidence            4568899999999999999963    246999999999999999999998888999999999999999999999999999


Q ss_pred             EEEEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         179 IEYHQELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       179 IDy~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      |||++++.+++|+| +|||++++||||+||++
T Consensus        85 IDy~~~~~~~~F~f-~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         85 VDYTEGLEGSRFVI-KNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             EEeecCCCcceEEE-ECCCCCcCCCCCcCccC
Confidence            99999999999985 99999999999999963

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=99.97  E-value=1.5e-31  Score=206.43  Aligned_cols=104  Identities=28%  Similarity=0.530  Sum_probs=97.3

Q ss_pred             cceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEE
Q psy7477         106 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYH  182 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~  182 (237)
                      |+|+||++|+++|++++++   ..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~   80 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV   80 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEe
Confidence            4599999999999999964   2569999999999999999999878899999999999999999999999999999999


Q ss_pred             ecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         183 QELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       183 e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      +++.+++|+| +|||++++||||+||++
T Consensus        81 ~~~~~~~F~f-~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         81 KEGLNEGFKF-TNPNVKDECGCGESFHV  107 (107)
T ss_pred             eCCCCceEEE-ECCCCCCccCCCCCeeC
Confidence            9999999996 99999999999999963

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=99.97  E-value=3.6e-31  Score=208.84  Aligned_cols=106  Identities=19%  Similarity=0.437  Sum_probs=99.7

Q ss_pred             cccceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         104 TLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       104 ~~~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      .+++|+||++|+++|++++++   ..+|||+++++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++||
T Consensus        14 ~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~ID   93 (122)
T PRK09504         14 AWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTEVD   93 (122)
T ss_pred             CcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcEEE
Confidence            468999999999999999964   25799999999999999999999888999999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      |++++.++||+| +|||++++||||+||++
T Consensus        94 y~~~~~~~gF~f-~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         94 YVREGLNQIFKF-HNPKAQNECGCGESFGV  122 (122)
T ss_pred             eecCCCcceEEE-ECCCCCCCcCCCCCeeC
Confidence            999999999985 99999999999999963

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=99.97  E-value=5e-31  Score=216.99  Aligned_cols=107  Identities=46%  Similarity=0.867  Sum_probs=99.5

Q ss_pred             cccceeechHHHHHHHHHhcC-----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcE
Q psy7477         104 TLKDLVIHDSCIKKLKEISTD-----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSV  178 (237)
Q Consensus       104 ~~~~i~IT~~A~~~l~~~l~~-----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~  178 (237)
                      ..+.|+||++|+++|++++++     ..+|||+|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++
T Consensus        51 ~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~  130 (163)
T PLN03082         51 SLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGAT  130 (163)
T ss_pred             cCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCE
Confidence            346799999999999999864     247999999999999999999998888999999999999999999999999999


Q ss_pred             EEEEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         179 IEYHQELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       179 IDy~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      |||++++.++||+|++|||++++||||+||++
T Consensus       131 IDYve~l~~~gF~f~~NPna~~~CgCG~SF~v  162 (163)
T PLN03082        131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (163)
T ss_pred             EEeecCCCCCeeEEecCCCCCCCcCCCCCEeC
Confidence            99999999999995499999999999999975

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=99.97  E-value=1.5e-30  Score=200.84  Aligned_cols=102  Identities=20%  Similarity=0.451  Sum_probs=96.7

Q ss_pred             ceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEe
Q psy7477         107 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQ  183 (237)
Q Consensus       107 ~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e  183 (237)
                      +|+||++|+++|++++++   ..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||++
T Consensus         2 ~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~   81 (107)
T TIGR01997         2 VITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFVR   81 (107)
T ss_pred             eEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEEE
Confidence            689999999999999964   35799999999999999999998888999999999999999999999999999999999


Q ss_pred             cCccceeEEeeCCCCCCCCCCCCCCC
Q psy7477         184 ELIRSAFQISNNPQVEQGNLTKGDHF  209 (237)
Q Consensus       184 ~~~g~gF~i~~nP~~~~~CgCG~Sf~  209 (237)
                      ++.+++|+| +|||++++||||+||+
T Consensus        82 ~~~~~~F~~-~NPn~~~~CgCG~Sf~  106 (107)
T TIGR01997        82 TTLRQGFKF-NNPNATSACGCGESFE  106 (107)
T ss_pred             cCCcceEEE-ECCCCCCccCCCCCcc
Confidence            999999996 9999999999999995

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=99.97  E-value=1.4e-30  Score=200.38  Aligned_cols=101  Identities=29%  Similarity=0.549  Sum_probs=95.6

Q ss_pred             eeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEec
Q psy7477         108 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQE  184 (237)
Q Consensus       108 i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e~  184 (237)
                      |+||++|+++|++++++   ..+|||+++++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|||+++
T Consensus         1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~   80 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKE   80 (105)
T ss_pred             CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecC
Confidence            68999999999999974   257999999999999999999988889999999999999999999999999999999999


Q ss_pred             CccceeEEeeCCCCCCCCCCCCCCC
Q psy7477         185 LIRSAFQISNNPQVEQGNLTKGDHF  209 (237)
Q Consensus       185 ~~g~gF~i~~nP~~~~~CgCG~Sf~  209 (237)
                      +.+++|+| +|||++++||||+||+
T Consensus        81 ~~~~~F~~-~nPna~~~CgCg~Sf~  104 (105)
T TIGR02011        81 GLNEGFKF-TNPNVKDECGCGESFH  104 (105)
T ss_pred             CCcceEEE-ECCCCCccCCCCCCcc
Confidence            99999996 9999999999999996

This clade is limited to the proteobacteria.

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=99.96  E-value=1e-28  Score=189.54  Aligned_cols=100  Identities=38%  Similarity=0.659  Sum_probs=94.6

Q ss_pred             eechHHHHHHHHHhcCC----CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEec
Q psy7477         109 VIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQE  184 (237)
Q Consensus       109 ~IT~~A~~~l~~~l~~~----~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e~  184 (237)
                      +||++|+++|+++++.+    .+|||+++.+||+|++|+|.++++++++|.+++.+|++|+||+++++||+|++|||+++
T Consensus         1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~   80 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE   80 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence            58999999999999742    58999999999999999999998788999999999999999999999999999999999


Q ss_pred             CccceeEEeeCCCCCCCCCCCCCCC
Q psy7477         185 LIRSAFQISNNPQVEQGNLTKGDHF  209 (237)
Q Consensus       185 ~~g~gF~i~~nP~~~~~CgCG~Sf~  209 (237)
                      ..+++|+| +|||++++||||+||+
T Consensus        81 ~~~~~f~i-~nPn~~~~c~cg~sf~  104 (105)
T TIGR00049        81 LLGSGFTF-TNPNAKGTCGCGKSFS  104 (105)
T ss_pred             CCcceEEE-ECCCCCccCCCCcCcc
Confidence            99999996 9999999999999996

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.93  E-value=2.5e-26  Score=193.96  Aligned_cols=120  Identities=15%  Similarity=0.287  Sum_probs=106.8

Q ss_pred             ceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEe--cCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEE
Q psy7477         107 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEY  181 (237)
Q Consensus       107 ~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~--~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy  181 (237)
                      ||+||++|+++|++++++   +.+|||+|+++||+|++|+|.+  ++++.++|.+++.+|++|+||+.++.||+|++|||
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDy   80 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDF   80 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEE
Confidence            689999999999999964   2579999999999999999999  67778999999999999999999999999999999


Q ss_pred             EecCccceeEEeeCCCCCCCCCCCCCCCCCCCchhcccccceeeeCCCCcc
Q psy7477         182 HQELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDS  232 (237)
Q Consensus       182 ~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~~~~~~~~~~~~~i~p~~~~  232 (237)
                      ++++.+++|+| +|||+++     .-....+++.++++++|+.+|+|.|.+
T Consensus        81 ve~~~g~gF~f-~NPNa~~-----~~~~~~~~~~~~i~~~l~~~irP~l~~  125 (192)
T PRK11190         81 VTDQLGSQLTL-KAPNAKM-----RKVADDAPLMERVEYVLQSQINPQLAG  125 (192)
T ss_pred             eecCCCCceEE-ECCCCCC-----CCCcccHHHHHHHHHHHHhccChhHHh
Confidence            99999999996 9999986     101123458999999999999999875

>KOG1119|consensus

Probab=99.93  E-value=7.6e-26  Score=185.41  Aligned_cols=105  Identities=49%  Similarity=0.904  Sum_probs=100.8

Q ss_pred             ceeechHHHHHHHHHhcCC-CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEecC
Q psy7477         107 DLVIHDSCIKKLKEISTDG-SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQEL  185 (237)
Q Consensus       107 ~i~IT~~A~~~l~~~l~~~-~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e~~  185 (237)
                      .+.++++|.++++++..++ ..||+.|++|||+||+|.|.+|....++|.++..+|.+|+||..++.+++|++|||.+++
T Consensus        93 ~~~lsds~~krl~EI~~~~pe~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~EL  172 (199)
T KOG1119|consen   93 NLHLSDSCSKRLKEIYENSPEFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNEL  172 (199)
T ss_pred             eEEehhHHHHHHHHHHhCCcceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHHH
Confidence            4889999999999999987 899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEeeCCCCCCCCCCCCCCCCC
Q psy7477         186 IRSAFQISNNPQVEQGNLTKGDHFIS  211 (237)
Q Consensus       186 ~g~gF~i~~nP~~~~~CgCG~Sf~~~  211 (237)
                      .++.|+++.||.++.+||||+||.++
T Consensus       173 IrSsF~ivnNP~A~~gCsCgSSF~ik  198 (199)
T KOG1119|consen  173 IRSSFRIVNNPSAKQGCSCGSSFDIK  198 (199)
T ss_pred             hhhhheeecCcccccCCCCCcccccC
Confidence            99999999999999999999999653

>KOG1120|consensus

Probab=99.93  E-value=1.1e-25  Score=174.43  Aligned_cols=106  Identities=24%  Similarity=0.432  Sum_probs=99.9

Q ss_pred             cccceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         104 TLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       104 ~~~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      .+.-|++||+|+++|+.++++   ...|||.|+..||+|++|.|.+.+++...|++++.+|++|+||+++...+-|+++|
T Consensus        26 ~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~liGteMD  105 (134)
T KOG1120|consen   26 RKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTLIGTEMD  105 (134)
T ss_pred             cccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeeeccceeh
Confidence            456899999999999999983   48899999999999999999999888899999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      |+++..+++|+| .|||+++.||||.||++
T Consensus       106 yvddkL~Sefvf-~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen  106 YVDDKLSSEFVF-SNPNAKGTCGCGESFSV  134 (134)
T ss_pred             hhhhhhcCceEe-eCCCccccccccccccC
Confidence            999999999995 99999999999999963

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.92  E-value=3.6e-25  Score=186.84  Aligned_cols=119  Identities=18%  Similarity=0.260  Sum_probs=105.6

Q ss_pred             eeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEe--cCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEE
Q psy7477         108 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYH  182 (237)
Q Consensus       108 i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~--~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~  182 (237)
                      |+||++|+++|++++++   +.+|||+|+++||+|++|+|.+  +++++++|.+++.+|++|+||+.++.||+|++|||+
T Consensus         1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv   80 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV   80 (190)
T ss_pred             CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence            57999999999999974   2579999999999999999999  566789999999999999999999999999999999


Q ss_pred             ecCccceeEEeeCCCCCCCCCCCCCCCCCCCchhcccccceeeeCCCCcc
Q psy7477         183 QELIRSAFQISNNPQVEQGNLTKGDHFISPSNITRIRPRLSYRISPGIDS  232 (237)
Q Consensus       183 e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~~~~~~~~~~~~~i~p~~~~  232 (237)
                      +++.+++|+| +|||++..     .....+++.++++++|+.+|+|.|.+
T Consensus        81 e~~~g~gF~f-~NPna~~~-----~~~~~~~~~~~i~~~l~~~irP~l~~  124 (190)
T TIGR03341        81 TDRMGGQLTL-KAPNAKMP-----KVADDAPLEERINYVLQSEINPQLAS  124 (190)
T ss_pred             ecCCCceeEE-eCCccCCC-----cCccchHHHHHHHHHHHhccCHHHHh
Confidence            9999999996 99999752     21123458999999999999999875

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.88  E-value=1e-22  Score=153.17  Aligned_cols=86  Identities=21%  Similarity=0.405  Sum_probs=80.2

Q ss_pred             cceeechHHHHHHHHHhcC-C---CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEE
Q psy7477         106 KDLVIHDSCIKKLKEISTD-G---SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEY  181 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~-~---~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy  181 (237)
                      .||+||++|+++|++++++ +   .+|||+|+++||+|++|+|.+++. +++|.+++.+|++|+||+.++.||+|++|||
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~~-~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy   80 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADEE-KEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC   80 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecCC-CCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence            5899999999999999964 2   459999999999999999999874 8999999999999999999999999999999


Q ss_pred             EecCccceeEE
Q psy7477         182 HQELIRSAFQI  192 (237)
Q Consensus       182 ~e~~~g~gF~i  192 (237)
                      ++++.++||+|
T Consensus        81 ~~~~~g~gF~~   91 (92)
T TIGR01911        81 AEENFGAGFSL   91 (92)
T ss_pred             ecCCCCCcEEe
Confidence            99999999985

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=8.1e-23  Score=157.84  Aligned_cols=88  Identities=25%  Similarity=0.467  Sum_probs=80.3

Q ss_pred             CcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCC
Q psy7477          25 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKP   99 (237)
Q Consensus        25 ~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~ID   99 (237)
                      +++|+|||+|++|+++++++    +.+|||+|++|||+||+|.|+|++++.++|.+++.+|++|+| ++|++||.|++||
T Consensus         2 ~~~itlT~~Aa~~v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~~ID   81 (110)
T COG0316           2 AMMITLTDAAAARVKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGTEID   81 (110)
T ss_pred             CCceeeCHHHHHHHHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCCEEE
Confidence            57899999999999999986    347999999999999999999999999999999999999999 5999999999999


Q ss_pred             Ccccc-ccceeech
Q psy7477         100 VSAST-LKDLVIHD  112 (237)
Q Consensus       100 y~~~~-~~~i~IT~  112 (237)
                      |+++. ...++|..
T Consensus        82 yv~~~~g~~F~~~N   95 (110)
T COG0316          82 YVEDLLGSGFTFKN   95 (110)
T ss_pred             EEEcCcCCceEEEC
Confidence            99986 46676653

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=99.85  E-value=9.3e-22  Score=162.03  Aligned_cols=89  Identities=37%  Similarity=0.673  Sum_probs=78.9

Q ss_pred             CCCCcceeeCHHHHHHHHHHhhCC-----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCC
Q psy7477          22 ASTLKDLVIHDSCIKKLKEISTDG-----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSP   95 (237)
Q Consensus        22 ~~~~~~itlT~~A~~~i~~l~~~~-----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g   95 (237)
                      .+..+.|+|||+|+++|+++++++     .+|||+|++|||+||+|.|.|+++++++|.+++.+|++|+|+ .+++||.|
T Consensus        49 ~~~~~~I~lTd~A~~~ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~G  128 (163)
T PLN03082         49 SASLDAVHMTDNCIRRLKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKG  128 (163)
T ss_pred             cccCCceEECHHHHHHHHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCC
Confidence            344567999999999999999751     479999999999999999999998889999999999999995 99999999


Q ss_pred             CCCCCcccc-ccceee
Q psy7477          96 SEKPVSAST-LKDLVI  110 (237)
Q Consensus        96 ~~IDy~~~~-~~~i~I  110 (237)
                      ++|||.++. ...|.+
T Consensus       129 s~IDYve~l~~~gF~f  144 (163)
T PLN03082        129 ATVDYVEELIRSAFVV  144 (163)
T ss_pred             CEEEeecCCCCCeeEE
Confidence            999999875 456766

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=99.84  E-value=3.7e-21  Score=151.84  Aligned_cols=92  Identities=18%  Similarity=0.315  Sum_probs=81.7

Q ss_pred             CCCCcceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCC
Q psy7477          22 ASTLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSE   97 (237)
Q Consensus        22 ~~~~~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~   97 (237)
                      ...|++|+|||+|+++|++++++   ..+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+| +.++.||+|++
T Consensus        12 ~~~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~   91 (122)
T PRK09504         12 DFAWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTE   91 (122)
T ss_pred             cCCcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcE
Confidence            56778999999999999999975   247999999999999999999999999999999999999999 49999999999


Q ss_pred             CCCcccc-ccceeechH
Q psy7477          98 KPVSAST-LKDLVIHDS  113 (237)
Q Consensus        98 IDy~~~~-~~~i~IT~~  113 (237)
                      |||.++. ...+.+...
T Consensus        92 IDy~~~~~~~gF~f~NP  108 (122)
T PRK09504         92 VDYVREGLNQIFKFHNP  108 (122)
T ss_pred             EEeecCCCcceEEEECC
Confidence            9999874 456666543

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.84  E-value=6.5e-21  Score=147.54  Aligned_cols=100  Identities=30%  Similarity=0.563  Sum_probs=92.2

Q ss_pred             cceeechHHHHHHHHHhcCCCc-eEEEEecCC--------CC-cceeeEEecCCC-CCCCeEEEeCCeEEEEcCCccccc
Q psy7477         106 KDLVIHDSCIKKLKEISTDGSF-LRIIVEGGG--------CS-GFQYKFELDTQV-SDEDRVYEKSGCKVVIDQTSLEYV  174 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~~~~-lRi~v~~~G--------Cs-G~~y~l~~~~~~-~~~D~v~~~~Gi~v~id~~s~~~L  174 (237)
                      |.|+||++|+++|++++++... |||+++.+|        |+ |++|.|.+++++ .+.|.+++.+|++|+|++.+++||
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~~~irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~l   80 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDPKKIRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWYL   80 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTTESEEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHHH
T ss_pred             CEEEECHHHHHHHHHHHhcCCCEEEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhhh
Confidence            5799999999999999997655 999999988        99 999999999877 799999999999999999999999


Q ss_pred             -cCcEEEEEecCccceeEEeeCCCCCCCCCCCC
Q psy7477         175 -QGSVIEYHQELIRSAFQISNNPQVEQGNLTKG  206 (237)
Q Consensus       175 -~g~~IDy~e~~~g~gF~i~~nP~~~~~CgCG~  206 (237)
                       ++++|||.++..+.+|++ +||+..+.|+||+
T Consensus        81 ~~~~~iD~~~~~~~~~f~~-~~~~~~~~~~~~~  112 (112)
T PF01521_consen   81 DEGLTIDYVEDLGGFGFKS-DNPNLDSNCGCGD  112 (112)
T ss_dssp             -TTEEEEEEEETTEEEEEE-ETTTEEEEECECE
T ss_pred             hCCCEEEEEEccCccEEEE-CCCCcCceeccCC
Confidence             999999999999999995 9999999999984

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.83  E-value=1e-20  Score=142.27  Aligned_cols=78  Identities=14%  Similarity=0.221  Sum_probs=71.4

Q ss_pred             cceeeCHHHHHHHHHHhhCC----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCC
Q psy7477          26 KDLVIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPV  100 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~~----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy  100 (237)
                      .||+|||+|+++|+++++++    .+|||+|+++||||++|.|.+++ ++++|.+++.+|++|+| +.+++||.|++|||
T Consensus         2 ~~i~lT~~A~~~i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~iDy   80 (92)
T TIGR01911         2 KIVAMSDDAYEEFKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSIEC   80 (92)
T ss_pred             CceEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEEEE
Confidence            47999999999999999752    35999999999999999999987 48999999999999999 59999999999999


Q ss_pred             cccc
Q psy7477         101 SAST  104 (237)
Q Consensus       101 ~~~~  104 (237)
                      +++.
T Consensus        81 ~~~~   84 (92)
T TIGR01911        81 AEEN   84 (92)
T ss_pred             ecCC
Confidence            8874

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=99.81  E-value=6.8e-20  Score=143.05  Aligned_cols=92  Identities=32%  Similarity=0.485  Sum_probs=80.5

Q ss_pred             CCCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCC
Q psy7477          21 SASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSP   95 (237)
Q Consensus        21 ~~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g   95 (237)
                      ++.+.++|+||++|+++|+++++.    ..+|||+|+++||+||+|.|.+++++.++|.+++.+|++|+|+ .+++||+|
T Consensus         3 ~~~~~~~i~iT~~A~~~i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g   82 (115)
T PRK13623          3 SDDVPLPLVFTDAAAAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVG   82 (115)
T ss_pred             ccccCcceEECHHHHHHHHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCC
Confidence            455678899999999999999964    2359999999999999999999988899999999999999995 89999999


Q ss_pred             CCCCCcccc-ccceeech
Q psy7477          96 SEKPVSAST-LKDLVIHD  112 (237)
Q Consensus        96 ~~IDy~~~~-~~~i~IT~  112 (237)
                      ++|||.++. ...+.++.
T Consensus        83 ~~IDy~~~~~~~~F~f~N  100 (115)
T PRK13623         83 AEVDYTEGLEGSRFVIKN  100 (115)
T ss_pred             CEEEeecCCCcceEEEEC
Confidence            999999875 34566644

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=99.81  E-value=6.7e-20  Score=141.44  Aligned_cols=87  Identities=21%  Similarity=0.332  Sum_probs=77.4

Q ss_pred             cceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCc
Q psy7477          26 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVS  101 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~  101 (237)
                      |+|+|||+|+++|++++++   ..+|||+|+++||+|++|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||+
T Consensus         1 m~i~iT~~A~~~i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy~   80 (107)
T PRK09502          1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV   80 (107)
T ss_pred             CeEEECHHHHHHHHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEEe
Confidence            3599999999999999975   246999999999999999999988899999999999999999 499999999999999


Q ss_pred             ccc-ccceeech
Q psy7477         102 AST-LKDLVIHD  112 (237)
Q Consensus       102 ~~~-~~~i~IT~  112 (237)
                      ++. ...+++..
T Consensus        81 ~~~~~~~F~f~N   92 (107)
T PRK09502         81 KEGLNEGFKFTN   92 (107)
T ss_pred             eCCCCceEEEEC
Confidence            875 45676654

>KOG1120|consensus

Probab=99.80  E-value=1.3e-19  Score=140.84  Aligned_cols=99  Identities=22%  Similarity=0.295  Sum_probs=85.7

Q ss_pred             CCCCCCCCCCcceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccc
Q psy7477          16 SEKPVSASTLKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYS   91 (237)
Q Consensus        16 ~~~~~~~~~~~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~   91 (237)
                      .+++..+.++.-|+|||.|.+||++++++   ..+|||+|+.+||+|++|.|+|.+.+...|.+++++|++||| +++++
T Consensus        18 ~a~~~~~~~k~~ltLTp~Av~~ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l   97 (134)
T KOG1120|consen   18 PAARKLAPRKAALTLTPSAVNHIKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALL   97 (134)
T ss_pred             cccccccccccccccCHHHHHHHHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEccccee
Confidence            33444567788899999999999999984   468999999999999999999999889999999999999999 69999


Q ss_pred             cCCCCCCCCccccc--cceeechHH
Q psy7477          92 TSSPSEKPVSASTL--KDLVIHDSC  114 (237)
Q Consensus        92 ~l~g~~IDy~~~~~--~~i~IT~~A  114 (237)
                      ++.|+++||+++..  .-+.++|+|
T Consensus        98 ~liGteMDyvddkL~Sefvf~npna  122 (134)
T KOG1120|consen   98 TLIGTEMDYVDDKLSSEFVFSNPNA  122 (134)
T ss_pred             eeccceehhhhhhhcCceEeeCCCc
Confidence            99999999999853  334566664

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=99.80  E-value=1.7e-19  Score=139.12  Aligned_cols=87  Identities=16%  Similarity=0.315  Sum_probs=77.5

Q ss_pred             cceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCCCCCCc
Q psy7477          26 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPSEKPVS  101 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~~IDy~  101 (237)
                      ++|+|||+|+++|++++++   ..+|||+|+++||+|++|.|.++++++++|.+++.+|++|+|+ .++.||.|++|||+
T Consensus         1 ~~i~iT~~A~~~i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~   80 (107)
T TIGR01997         1 AVITLTDAAAIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQVDFV   80 (107)
T ss_pred             CeEEECHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEEEEE
Confidence            3699999999999999975   2479999999999999999999888999999999999999995 99999999999999


Q ss_pred             ccc-ccceeech
Q psy7477         102 AST-LKDLVIHD  112 (237)
Q Consensus       102 ~~~-~~~i~IT~  112 (237)
                      ++. ...+++..
T Consensus        81 ~~~~~~~F~~~N   92 (107)
T TIGR01997        81 RTTLRQGFKFNN   92 (107)
T ss_pred             EcCCcceEEEEC
Confidence            985 34566643

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=99.78  E-value=6.1e-19  Score=135.59  Aligned_cols=85  Identities=21%  Similarity=0.345  Sum_probs=75.7

Q ss_pred             eeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCccc
Q psy7477          28 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVSAS  103 (237)
Q Consensus        28 itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~~~  103 (237)
                      |+|||+|+++|++++++   ..+|||+|+++||+|++|.|.|+++++++|.+++.+|++|+| +.++.||+|++|||.++
T Consensus         1 I~iT~~A~~~i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy~~~   80 (105)
T TIGR02011         1 ITLTDSAAARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDFVKE   80 (105)
T ss_pred             CEECHHHHHHHHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEEecC
Confidence            68999999999999975   247999999999999999999988899999999999999999 59999999999999987


Q ss_pred             c-ccceeech
Q psy7477         104 T-LKDLVIHD  112 (237)
Q Consensus       104 ~-~~~i~IT~  112 (237)
                      . ...+++..
T Consensus        81 ~~~~~F~~~n   90 (105)
T TIGR02011        81 GLNEGFKFTN   90 (105)
T ss_pred             CCcceEEEEC
Confidence            4 34566643

This clade is limited to the proteobacteria.

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.77  E-value=9.3e-19  Score=147.95  Aligned_cols=85  Identities=13%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             ceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEee--cCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCC
Q psy7477          27 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPV  100 (237)
Q Consensus        27 ~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~--~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy  100 (237)
                      ||+|||+|+++|++++++   ..+|||+|++|||+||+|.|.|  ++++.++|.+++.+|++|+| +.+++||.|++|||
T Consensus         1 ~i~iTd~A~~~i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~IDy   80 (192)
T PRK11190          1 MITISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEIDF   80 (192)
T ss_pred             CcEECHHHHHHHHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEEEE
Confidence            689999999999999975   2469999999999999999999  77788999999999999999 59999999999999


Q ss_pred             cccc-ccceeec
Q psy7477         101 SAST-LKDLVIH  111 (237)
Q Consensus       101 ~~~~-~~~i~IT  111 (237)
                      .++. ...|++.
T Consensus        81 ve~~~g~gF~f~   92 (192)
T PRK11190         81 VTDQLGSQLTLK   92 (192)
T ss_pred             eecCCCCceEEE
Confidence            9874 3455554

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.72  E-value=1.7e-17  Score=140.21  Aligned_cols=84  Identities=13%  Similarity=0.099  Sum_probs=73.7

Q ss_pred             eeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEee--cCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCc
Q psy7477          28 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFEL--DTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVS  101 (237)
Q Consensus        28 itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~--~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~  101 (237)
                      |+||++|+++|++++++   +.+|||+|+++||+||+|.|.|  ++++.++|.+++.+|++|+| +.+++||.|++|||.
T Consensus         1 I~IT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~IDyv   80 (190)
T TIGR03341         1 ITITEAAQAYLAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVIDFV   80 (190)
T ss_pred             CEECHHHHHHHHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEEEEe
Confidence            68999999999999975   2479999999999999999999  67788999999999999999 599999999999999


Q ss_pred             ccc-ccceeec
Q psy7477         102 AST-LKDLVIH  111 (237)
Q Consensus       102 ~~~-~~~i~IT  111 (237)
                      ++. ...|++.
T Consensus        81 e~~~g~gF~f~   91 (190)
T TIGR03341        81 TDRMGGQLTLK   91 (190)
T ss_pred             ecCCCceeEEe
Confidence            874 3445443

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>KOG1119|consensus

Probab=99.70  E-value=4.9e-17  Score=133.69  Aligned_cols=78  Identities=40%  Similarity=0.743  Sum_probs=73.8

Q ss_pred             cceeeCHHHHHHHHHHhhCC-CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCCCCCCccc
Q psy7477          26 KDLVIHDSCIKKLKEISTDG-SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPSEKPVSAS  103 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~~-~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~~IDy~~~  103 (237)
                      ..+.|+|+|.++++++...+ ..|||.|++|||+||+|++.+|....++|.+++.+|.+|+|| .|+.++.|++|||.++
T Consensus        92 ~~~~lsds~~krl~EI~~~~pe~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~~E  171 (199)
T KOG1119|consen   92 FNLHLSDSCSKRLKEIYENSPEFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYTNE  171 (199)
T ss_pred             ceEEehhHHHHHHHHHHhCCcceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehHHH
Confidence            45899999999999999876 789999999999999999999999999999999999999996 9999999999999776

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=99.66  E-value=2.7e-16  Score=120.48  Aligned_cols=83  Identities=29%  Similarity=0.469  Sum_probs=73.8

Q ss_pred             eeCHHHHHHHHHHhhCC----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCCCCCCccc
Q psy7477          29 VIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPSEKPVSAS  103 (237)
Q Consensus        29 tlT~~A~~~i~~l~~~~----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~~IDy~~~  103 (237)
                      +||++|+++|+++++.+    .+|||+++.+||+|++|.|.+++++.++|.+++.+|++|+|+ .+++||+|++|||.++
T Consensus         1 ~iT~~A~~~l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy~~~   80 (105)
T TIGR00049         1 TLTDSAAKRIKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDYVEE   80 (105)
T ss_pred             CcCHHHHHHHHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEEeec
Confidence            58999999999999752    479999999999999999999988889999999999999995 8999999999999997


Q ss_pred             c-ccceeec
Q psy7477         104 T-LKDLVIH  111 (237)
Q Consensus       104 ~-~~~i~IT  111 (237)
                      . ...+.|.
T Consensus        81 ~~~~~f~i~   89 (105)
T TIGR00049        81 LLGSGFTFT   89 (105)
T ss_pred             CCcceEEEE
Confidence            5 3455554

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.54  E-value=2.8e-14  Score=104.34  Aligned_cols=85  Identities=24%  Similarity=0.409  Sum_probs=72.0

Q ss_pred             cceeechHHHHHHHHHhc--CCCceEEEEecCCCC----cceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccC--c
Q psy7477         106 KDLVIHDSCIKKLKEIST--DGSFLRIIVEGGGCS----GFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQG--S  177 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~--~~~~lRi~v~~~GCs----G~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g--~  177 (237)
                      |.|+||+.|++|+++.+.  ++..||++++.|||+    ||+.+++.+. |++--...+.+|++|||+++++||+++  +
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e~-PkE~g~~q~~Dgltffiee~DlWYF~d~d~   79 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKEV-PKEIGYKQEYDGLTFFIEEKDLWYFDDHDL   79 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCCCCEEEEEEEEcCcccccCCcceeeeccC-chhhchheeecCeEEEEecCceEEEcCCcE
Confidence            579999999999999986  578999999999997    5445544443 566666778999999999999999999  9


Q ss_pred             EEEEEecCccceeE
Q psy7477         178 VIEYHQELIRSAFQ  191 (237)
Q Consensus       178 ~IDy~e~~~g~gF~  191 (237)
                      +|||..+.....|.
T Consensus        80 ~v~y~~~~Dei~fs   93 (95)
T COG4841          80 KVDYSPDTDEISFS   93 (95)
T ss_pred             EEeccCCCCcceee
Confidence            99999988777775

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.50  E-value=2.9e-14  Score=110.20  Aligned_cols=79  Identities=24%  Similarity=0.378  Sum_probs=71.1

Q ss_pred             cceeeCHHHHHHHHHHhhCCCc-EEEEEecCC--------CC-ceeEEEeecCCC-CCCCeEEEeCCeEeee-cCccccC
Q psy7477          26 KDLVIHDSCIKKLKEISTDGSF-LRIIVEGGG--------CS-GFQYKFELDTQV-SDEDRVYEKSGCKIPT-LSPYSTS   93 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~~~~-lRi~v~~gG--------Cs-G~~Y~l~~~~~~-~~~D~~~~~~g~~v~i-~~s~~~l   93 (237)
                      |.|+||++|+++|++++.+... |||.+..+|        |+ |++|.|.++++. .++|.+++.+|++|+| +.++.||
T Consensus         1 M~I~iT~~A~~~l~~~~~~~~~~irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~~~l   80 (112)
T PF01521_consen    1 MKITITDAAAERLKQLLKEDPKKIRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSLWYL   80 (112)
T ss_dssp             -EEEE-HHHHHHHHHHHHCTTESEEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGHHHH
T ss_pred             CEEEECHHHHHHHHHHHhcCCCEEEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHhhhh
Confidence            5699999999999999998655 999999998        99 999999999877 8999999999999999 5889999


Q ss_pred             -CCCCCCCcccc
Q psy7477          94 -SPSEKPVSAST  104 (237)
Q Consensus        94 -~g~~IDy~~~~  104 (237)
                       .|++|||.++.
T Consensus        81 ~~~~~iD~~~~~   92 (112)
T PF01521_consen   81 DEGLTIDYVEDL   92 (112)
T ss_dssp             -TTEEEEEEEET
T ss_pred             hCCCEEEEEEcc
Confidence             99999998764

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.74  E-value=2e-08  Score=73.79  Aligned_cols=78  Identities=22%  Similarity=0.245  Sum_probs=64.2

Q ss_pred             cceeeCHHHHHHHHHHhh--CCCcEEEEEecCCCC----ceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCC--C
Q psy7477          26 KDLVIHDSCIKKLKEIST--DGSFLRIIVEGGGCS----GFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSP--S   96 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~--~~~~lRi~v~~gGCs----G~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g--~   96 (237)
                      |.|++|++|.+..++-+.  ++..+|++|+-|||+    ||+..+.-+ .|++--..-+.+|++||| .+.++|.++  .
T Consensus         1 Mni~vtd~A~~wfk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~d~   79 (95)
T COG4841           1 MNIEVTDQALKWFKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDHDL   79 (95)
T ss_pred             CceEEcHHHHHHHHHhcCCCCCCEEEEEEEEcCcccccCCcceeeecc-CchhhchheeecCeEEEEecCceEEEcCCcE
Confidence            569999999999999875  467899999999997    777777653 355555566889999999 699999999  7


Q ss_pred             CCCCcccc
Q psy7477          97 EKPVSAST  104 (237)
Q Consensus        97 ~IDy~~~~  104 (237)
                      .|||..++
T Consensus        80 ~v~y~~~~   87 (95)
T COG4841          80 KVDYSPDT   87 (95)
T ss_pred             EEeccCCC
Confidence            78988775

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.11  E-value=4.7e-06  Score=62.91  Aligned_cols=77  Identities=18%  Similarity=0.183  Sum_probs=62.8

Q ss_pred             cceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCc---eeEEEeecCCCCCCCeEEEeCCeEeee-c-CccccCCCC
Q psy7477          26 KDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSG---FQYKFELDTQVSDEDRVYEKSGCKIPT-L-SPYSTSSPS   96 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG---~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~-~s~~~l~g~   96 (237)
                      |.|++|++|+++|++...-    +..||+-.++.||.|   +.|.+.-++  ...|..++.++.+++| + .+..|-+.+
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~--tg~d~~idsn~gPiyik~~~~~Ff~D~m   78 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEE--TGFDASIDSNFGPIYIKDYGSYFFQDEM   78 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEec--cCcccccccCCCcEEEEecceeEeccee
Confidence            4699999999999988764    357898888889965   666665443  5678889999999999 5 888888999


Q ss_pred             CCCCcccc
Q psy7477          97 EKPVSAST  104 (237)
Q Consensus        97 ~IDy~~~~  104 (237)
                      +|||.++.
T Consensus        79 tidyN~~~   86 (114)
T COG4918          79 TIDYNPSY   86 (114)
T ss_pred             eeecCCcc
Confidence            99998774

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.09  E-value=7.4e-06  Score=61.85  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=63.0

Q ss_pred             cceeechHHHHHHHHHhcC----CCceEEEEecCCCCc-ceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccC-cEE
Q psy7477         106 KDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSG-FQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQG-SVI  179 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG-~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g-~~I  179 (237)
                      |.|++|++|+++|+.....    ...+|...++.||.| --+.+.++.+.+..|..++.++.+++|-..-.-||++ ++|
T Consensus         1 M~Itftd~a~~~l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rlvae~tg~d~~idsn~gPiyik~~~~~Ff~D~mti   80 (114)
T COG4918           1 MKITFTDKAADKLKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRLVAEETGFDASIDSNFGPIYIKDYGSYFFQDEMTI   80 (114)
T ss_pred             CeEEecHHHHHHHHHhhccCcCccceEEEeccccccccCCcceEEEEEeccCcccccccCCCcEEEEecceeEecceeee
Confidence            5799999999999988763    367888778888854 1344444444467899999999999999998888886 799


Q ss_pred             EEEecC
Q psy7477         180 EYHQEL  185 (237)
Q Consensus       180 Dy~e~~  185 (237)
                      ||.+..
T Consensus        81 dyN~~~   86 (114)
T COG4918          81 DYNPSY   86 (114)
T ss_pred             ecCCcc
Confidence            999764

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.019  Score=43.32  Aligned_cols=88  Identities=11%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CCcceeeCHHHHHHHHHHhhCCCcEEEEEecCCCCceeEEEeecC---CCCCCCeEE-EeCCeEeee--c-CccccCCCC
Q psy7477          24 TLKDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDT---QVSDEDRVY-EKSGCKIPT--L-SPYSTSSPS   96 (237)
Q Consensus        24 ~~~~itlT~~A~~~i~~l~~~~~~lRi~v~~gGCsG~~Y~l~~~~---~~~~~D~~~-~~~g~~v~i--~-~s~~~l~g~   96 (237)
                      ++..++.|++|..-|++|..+-. =-+|-..|||+.=+-.|-|..   -..+.|+.. +.+|++|||  + -.++-.-..
T Consensus         3 ~~~~V~aT~aAl~Li~~l~~~hg-pvmFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTqL   81 (116)
T COG3564           3 MPARVLATPAALDLIAELQAEHG-PVMFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQL   81 (116)
T ss_pred             CCcceecCHHHHHHHHHHHHhcC-CEEEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccEE
Confidence            34568999999999999987643 356778888874355565532   124566644 789999999  3 234455566


Q ss_pred             CCCCccccccceeech
Q psy7477          97 EKPVSASTLKDLVIHD  112 (237)
Q Consensus        97 ~IDy~~~~~~~i~IT~  112 (237)
                      .||.+.....|+.+..
T Consensus        82 IIDVVpGRGGmFSLdn   97 (116)
T COG3564          82 IIDVVPGRGGMFSLDN   97 (116)
T ss_pred             EEEEecCCCceeEccC
Confidence            7898888888988853

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.83  E-value=0.5  Score=35.79  Aligned_cols=88  Identities=17%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             cceeechHHHHHHHHHhcCCCceEEEEecCCCCcceeeEEecCC---CCCCCeEE-EeCCeEEEEcCCccccccC--cEE
Q psy7477         106 KDLVIHDSCIKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQ---VSDEDRVY-EKSGCKVVIDQTSLEYVQG--SVI  179 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~~~~lRi~v~~~GCsG~~y~l~~~~~---~~~~D~v~-~~~Gi~v~id~~s~~~L~g--~~I  179 (237)
                      ..+..|++|+.-|.++..+...+-+ -..+||..-+--|-+...   .-++|+.. +.+|++|||......+-+-  +.|
T Consensus         5 ~~V~aT~aAl~Li~~l~~~hgpvmF-HQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKHTqLII   83 (116)
T COG3564           5 ARVLATPAALDLIAELQAEHGPVMF-HQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKHTQLII   83 (116)
T ss_pred             cceecCHHHHHHHHHHHHhcCCEEE-eccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhccEEEE
Confidence            3578899999998888877555544 456666422333333221   13567765 7899999999998877775  788


Q ss_pred             EEEecCccceeEEeeCC
Q psy7477         180 EYHQELIRSAFQISNNP  196 (237)
Q Consensus       180 Dy~e~~~g~gF~i~~nP  196 (237)
                      |.+.. .|..|.+ +|-
T Consensus        84 DVVpG-RGGmFSL-dng   98 (116)
T COG3564          84 DVVPG-RGGMFSL-DNG   98 (116)
T ss_pred             EEecC-CCceeEc-cCC
Confidence            87755 4778886 653

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=93.15  E-value=0.41  Score=36.03  Aligned_cols=76  Identities=18%  Similarity=0.310  Sum_probs=50.1

Q ss_pred             HHhcCCCceEEEEecCCCCcceeeEEecC---CCCCCCeEE-EeCCeEEEEcCCccccccC--cEEEEEecCccceeEEe
Q psy7477         120 EISTDGSFLRIIVEGGGCSGFQYKFELDT---QVSDEDRVY-EKSGCKVVIDQTSLEYVQG--SVIEYHQELIRSAFQIS  193 (237)
Q Consensus       120 ~~l~~~~~lRi~v~~~GCsG~~y~l~~~~---~~~~~D~v~-~~~Gi~v~id~~s~~~L~g--~~IDy~e~~~g~gF~i~  193 (237)
                      ++.++...|=+ -..+||..-+-=|-+..   ...+.|+.+ +..|++|+|.+....|.+.  ++||-++. .|.+|.+ 
T Consensus         5 ~L~~~HG~lmF-hQSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~G-rG~~FSL-   81 (95)
T PF05610_consen    5 RLKAKHGPLMF-HQSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPG-RGGGFSL-   81 (95)
T ss_pred             HHHHhcCCEEE-EeCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEec-CCCeeec-
Confidence            33333344444 45667742233344432   234677765 8899999999999999997  68998764 5789986 


Q ss_pred             eCCCC
Q psy7477         194 NNPQV  198 (237)
Q Consensus       194 ~nP~~  198 (237)
                      ++|..
T Consensus        82 E~~~G   86 (95)
T PF05610_consen   82 EAPEG   86 (95)
T ss_pred             cCCCC
Confidence            77754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	237
2apn_A	114	Hi1723 Solution Structure Length = 114		2e-13
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		6e-11
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		1e-07
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		3e-07

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 108 LVIHDSCIKKLKEI-----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGC 162
           L   D+   K+K +     +TD   LR+ + GGGCSGFQY F  D +V+D D   EKSG 
Sbjct: 9   LTFTDAAANKVKSLISEEENTDLK-LRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGV 67
Query: 163 KVVIDQTSLEYVQGSVIEYHQELIRSAFQISNNPQV 198
           ++VID  SL+Y+ G  ++Y + L  S F + NNP  
Sbjct: 68  QLVIDPMSLQYLIGGTVDYTEGLEGSRFTV-NNPNA 102

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 110 IHDSCIKKLKEISTDGSF----LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVV 165
           + D  ++++K+++ + +     LRI V  GGCSGFQY    D  V + D V+E  G KVV
Sbjct: 12  VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71
Query: 166 IDQTSLEYVQGSVIEYHQELIRSAFQISN 194
           ID  S+ YV G+ ++Y  + +   F I N
Sbjct: 72  IDPFSMPYVNGAELDYVVDFMGGGFTIRN 100

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
           LR+ V   GCSG  Y  E   + + ED V+E  G KVV+D  SL+++ G+ +++ +E + 
Sbjct: 26  LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLN 85
Query: 188 SAFQISNNPQVE 199
             F+ + NP V+
Sbjct: 86  EGFKFT-NPNVK 96

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 128 LRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQELIR 187
           LR+ V   GCSG  Y  E   + + ED V+E  G KVV+D  S++++ G+ +++ +E + 
Sbjct: 26  LRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKEGLN 85
Query: 188 SAFQISNNPQVE 199
             F+ + NP V+
Sbjct: 86  EGFKFT-NPNVK 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	237
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	2e-30
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	9e-16
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	3e-30
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	1e-15
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	1e-27
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	1e-13
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	4e-25
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	2e-12
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	1e-24
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	6e-12
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	1e-22
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	2e-12

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  108 bits (271), Expect = 2e-30
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 108 LVIHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
             + D  ++++K++    + +   LRI V  GGCSGFQY    D  V + D V+E  G K
Sbjct: 10  FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVK 69

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISNNP 196
           VVID  S+ YV G+ ++Y  + +   F I  NP
Sbjct: 70  VVIDPFSMPYVNGAELDYVVDFMGGGFTI-RNP 101

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score = 70.0 bits (172), Expect = 9e-16
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 28 LVIHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 83
            + D  ++++K++    + +   LRI V  GGCSGFQY    D  V + D V+E  G K
Sbjct: 10 FKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVK 69

Query: 84 I 84
          +
Sbjct: 70 V 70

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  107 bits (270), Expect = 3e-30
 Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 5/93 (5%)

Query: 108 LVIHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 163
           L   D+   K+K +          LR+ + GGGCSGFQY F  D +V+D D   EKSG +
Sbjct: 9   LTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQ 68

Query: 164 VVIDQTSLEYVQGSVIEYHQELIRSAFQISNNP 196
           +VID  SL+Y+ G  ++Y + L  S F + NNP
Sbjct: 69  LVIDPMSLQYLIGGTVDYTEGLEGSRFTV-NNP 100

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score = 69.6 bits (171), Expect = 1e-15
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 28 LVIHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCK 83
          L   D+   K+K +          LR+ + GGGCSGFQY F  D +V+D D   EKSG +
Sbjct: 9  LTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQ 68

Query: 84 I 84
          +
Sbjct: 69 L 69

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  101 bits (253), Expect = 1e-27
 Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 7/93 (7%)

Query: 112 DSCIKKLKEI------STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVV 165
            + I++L+ +          + LRI V+   C  ++Y   L  +    D + +  G  + 
Sbjct: 6   PAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIA 65

Query: 166 IDQTSLEYVQGSVIEYHQELIRSAFQISNNPQV 198
           I   + E ++G  ++Y ++L+  AF+  +NP  
Sbjct: 66  IAAEAAELLRGLRVDYIEDLMGGAFRF-HNPNA 97

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 32 DSCIKKLKEI------STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
           + I++L+ +          + LRI V+   C  ++Y   L  +    D + +  G  I
Sbjct: 6  PAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTI 64

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score = 94.6 bits (236), Expect = 4e-25
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 1/82 (1%)

Query: 115 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYV 174
           +         G  LR+ V   GCSG  Y  E   + + ED V+E  G KVV+D  SL+++
Sbjct: 13  VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFL 72

Query: 175 QGSVIEYHQELIRSAFQISNNP 196
            G+ +++ +E +   F+   NP
Sbjct: 73  DGTQLDFVKEGLNEGFKF-TNP 93

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 35 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          +         G  LR+ V   GCSG  Y  E   + + ED V+E  G K+
Sbjct: 13 VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 62

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score = 94.4 bits (235), Expect = 1e-24
 Identities = 18/84 (21%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 115 IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYV 174
           I++L         +R+ V+  GC+GF Y  +  ++   +D ++E  G K+ +   ++ ++
Sbjct: 51  IRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFI 110

Query: 175 QGSVIEYHQELIRSAFQISNNPQV 198
            G+ +++ +E +   F+  +NP+ 
Sbjct: 111 DGTEVDFVREGLNQIFKF-HNPKA 133

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 13/50 (26%), Positives = 26/50 (52%)

Query: 35  IKKLKEISTDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
           I++L         +R+ V+  GC+GF Y  +  ++   +D ++E  G K+
Sbjct: 51  IRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKL 100

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score = 88.5 bits (220), Expect = 1e-22
 Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 7/92 (7%)

Query: 110 IHDSCIKKLKEIS----TDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVV 165
           +  +  +++ + +    T+G  LR+           Y+   D  ++++D      G ++V
Sbjct: 25  LTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFD-DLTEDDIRLTSEGVEIV 83

Query: 166 IDQTSLEYVQGSVIEYHQELI-RSAFQISNNP 196
           I    +  +  + ++Y +    +  F    NP
Sbjct: 84  IAPDYVSLLDQTTLDYVELEPGQFHFIF-LNP 114

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 9/59 (15%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 30 IHDSCIKKLKEIS----TDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          +  +  +++ + +    T+G  LR+           Y+   D  ++++D      G +I
Sbjct: 25 LTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFD-DLTEDDIRLTSEGVEI 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	237
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	99.98
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	99.98
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	99.97
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	99.97
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.89
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	99.84
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	99.83
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	99.83
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	99.83
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	99.8
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.7
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.7
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.65
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.65
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.57

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=2.1e-33  Score=219.25  Aligned_cols=108  Identities=27%  Similarity=0.498  Sum_probs=89.2

Q ss_pred             cceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEE
Q psy7477         106 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYH  182 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~  182 (237)
                      |+|+||++|+++|++++++   +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++|||+
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~   80 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV   80 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred             CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEE
Confidence            6899999999999999963   4789999999999999999999877889999999999999999999999999999999


Q ss_pred             ecCccceeEEeeCCCCCCCCCCCCCCCCCCCc
Q psy7477         183 QELIRSAFQISNNPQVEQGNLTKGDHFISPSN  214 (237)
Q Consensus       183 e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~~  214 (237)
                      +++.+++|+| +|||++++||||+||++++.-
T Consensus        81 ~~~~g~gF~~-~NPna~~~CgCG~SF~~~~~~  111 (118)
T 1r94_A           81 KEGLNEGFKF-TNPNVKDECGCGESFKLAAAL  111 (118)
T ss_dssp             EETTEEEEEE-ECTTCCC--------------
T ss_pred             cCCCcCceEE-eCCCCCCCCCCCCCcCCCCCc
Confidence            9999999996 999999999999999976643

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=99.98  E-value=2.8e-33  Score=220.34  Aligned_cols=107  Identities=32%  Similarity=0.570  Sum_probs=86.0

Q ss_pred             ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      .+||+||++|+++|+++++.    +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus         7 ~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~ID   86 (124)
T 1nwb_A            7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELD   86 (124)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEEE
T ss_pred             CceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCEEE
Confidence            57899999999999999974    35899999999999999999999887899999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCCCCCCCCCCCCCCCCCC
Q psy7477         181 YHQELIRSAFQISNNPQVEQGNLTKGDHFISP  212 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~  212 (237)
                      |++++.+++|+| +|||++++||||+||++.+
T Consensus        87 y~~~~~g~gF~~-~NPna~~~CgCG~SF~~~~  117 (124)
T 1nwb_A           87 YVVDFMGGGFTI-RNPNATGSCGCGSSFSCGL  117 (124)
T ss_dssp             EEEETTEEEEEE-ECC----------------
T ss_pred             EEcCCCcceEEE-eCCCCCcCCCCCCCcCCCc
Confidence            999999999996 9999999999999998776

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=99.98  E-value=2e-33  Score=217.39  Aligned_cols=106  Identities=24%  Similarity=0.428  Sum_probs=97.4

Q ss_pred             ceeechHHHHHHHHHhcCC------CceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         107 DLVIHDSCIKKLKEISTDG------SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       107 ~i~IT~~A~~~l~~~l~~~------~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      ||+||++|+++|++++++.      .+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID   80 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD   80 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred             CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence            6999999999999998632      3799999999999999999999887899999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCCCCCCCCCCCCCCCCCCC
Q psy7477         181 YHQELIRSAFQISNNPQVEQGNLTKGDHFISPS  213 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~~~~  213 (237)
                      |++++.+++|+| +|||++++||||+||+++.|
T Consensus        81 y~~~~~g~gF~~-~nPna~~~CgCG~SF~~~~~  112 (112)
T 1x0g_A           81 YIEDLMGGAFRF-HNPNASQTCGCGMAFRVSRS  112 (112)
T ss_dssp             EEEETTEEEEEE-ECTTCSEECSSSSEEECCCC
T ss_pred             EEecCCCCEEEE-eCCCCCcCCCCCCccccCCC
Confidence            999999999996 99999999999999987754

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=99.97  E-value=4.2e-32  Score=218.81  Aligned_cols=104  Identities=17%  Similarity=0.412  Sum_probs=98.4

Q ss_pred             ccceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEE
Q psy7477         105 LKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEY  181 (237)
Q Consensus       105 ~~~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy  181 (237)
                      +|.|+||++|+++|++++++   +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++|||
T Consensus        38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy  117 (145)
T 2d2a_A           38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF  117 (145)
T ss_dssp             CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence            57799999999999999963   368999999999999999999998788999999999999999999999999999999


Q ss_pred             EecCccceeEEeeCCCCCCCCCCCCCCC
Q psy7477         182 HQELIRSAFQISNNPQVEQGNLTKGDHF  209 (237)
Q Consensus       182 ~e~~~g~gF~i~~nP~~~~~CgCG~Sf~  209 (237)
                      ++++.+++|+| +|||++++||||+||+
T Consensus       118 ~e~l~g~gF~f-~NPna~~~CGCG~SF~  144 (145)
T 2d2a_A          118 VREGLNQIFKF-HNPKAQNECGCGESFG  144 (145)
T ss_dssp             EEETTEEEEEE-ECTTTCSCCCCBCEEE
T ss_pred             EcCCCcceEEE-eCCCCCcccCCCCCcc
Confidence            99999999996 9999999999999995

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=99.97  E-value=6.4e-32  Score=209.46  Aligned_cols=105  Identities=37%  Similarity=0.634  Sum_probs=98.2

Q ss_pred             ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      .++|+||++|+++|++++++    +.+|||+++++||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|++||
T Consensus         6 ~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~ID   85 (114)
T 2apn_A            6 AVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTVD   85 (114)
T ss_dssp             CCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEEE
T ss_pred             cCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEEE
Confidence            35799999999999999962    36899999999999999999999877789999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCCCCCCCCCCCCCCCC
Q psy7477         181 YHQELIRSAFQISNNPQVEQGNLTKGDHFI  210 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP~~~~~CgCG~Sf~~  210 (237)
                      |++++.+++|+| +|||++++||||+||++
T Consensus        86 y~~~~~g~~F~~-~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           86 YTEGLEGSRFTV-NNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             EECSSSCCEEEE-ECHHHHCCCCCCCCSCC
T ss_pred             EEcCCCcceEEE-eCCCCCcCCCCCCCccC
Confidence            999999999996 99999999999999963

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.89  E-value=2.4e-23  Score=163.80  Aligned_cols=96  Identities=16%  Similarity=0.293  Sum_probs=88.7

Q ss_pred             cccceeechHHHHHHHHHhcC----CCceEEEEe--cCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCc
Q psy7477         104 TLKDLVIHDSCIKKLKEISTD----GSFLRIIVE--GGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGS  177 (237)
Q Consensus       104 ~~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~--~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~  177 (237)
                      ..++|+||++|+++|++++++    +.+|||+|+  ++|  |++|+|.++++ .++|.+++.+|++|+||+.+++||+|+
T Consensus        19 ~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G~   95 (125)
T 2k4z_A           19 SHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQT   95 (125)
T ss_dssp             CSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTTE
T ss_pred             CCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCCC
Confidence            468999999999999999963    268999999  888  99999999987 899999999999999999999999999


Q ss_pred             EEEEEe-cCccceeEEeeCCCCCCCCC
Q psy7477         178 VIEYHQ-ELIRSAFQISNNPQVEQGNL  203 (237)
Q Consensus       178 ~IDy~e-~~~g~gF~i~~nP~~~~~Cg  203 (237)
                      +|||++ ++.+++|+| +|||+++.|.
T Consensus        96 ~IDy~~~~l~g~gF~~-~NPna~~~~p  121 (125)
T 2k4z_A           96 TLDYVELEPGQFHFIF-LNPRDPTYRP  121 (125)
T ss_dssp             EEEEEEEETTEEEEEE-ECSSSCSSCC
T ss_pred             EEEEEeCCCCcCeEEE-CCCCCCccCC
Confidence            999999 999999996 9999998764

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=99.84  E-value=5.4e-22  Score=155.83  Aligned_cols=90  Identities=26%  Similarity=0.430  Sum_probs=79.5

Q ss_pred             CCCcceeeCHHHHHHHHHHhhCC----CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCC
Q psy7477          23 STLKDLVIHDSCIKKLKEISTDG----SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSE   97 (237)
Q Consensus        23 ~~~~~itlT~~A~~~i~~l~~~~----~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~   97 (237)
                      ..++||+|||+|+++|++++++.    .+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++
T Consensus         5 ~~~m~I~iT~~A~~~l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~   84 (124)
T 1nwb_A            5 AQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAE   84 (124)
T ss_dssp             CCCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCE
T ss_pred             ccCceEEECHHHHHHHHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCCCE
Confidence            34578999999999999999752    47999999999999999999999888899999999999999 49999999999


Q ss_pred             CCCcccc-ccceeech
Q psy7477          98 KPVSAST-LKDLVIHD  112 (237)
Q Consensus        98 IDy~~~~-~~~i~IT~  112 (237)
                      |||.++. ...+.+..
T Consensus        85 IDy~~~~~g~gF~~~N  100 (124)
T 1nwb_A           85 LDYVVDFMGGGFTIRN  100 (124)
T ss_dssp             EEEEEETTEEEEEEEC
T ss_pred             EEEEcCCCcceEEEeC
Confidence            9999874 45676653

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=99.83  E-value=2e-21  Score=156.43  Aligned_cols=87  Identities=18%  Similarity=0.322  Sum_probs=78.4

Q ss_pred             CcceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCC
Q psy7477          25 LKDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPV  100 (237)
Q Consensus        25 ~~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy  100 (237)
                      ++.|+|||+|+++|++++++   +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||
T Consensus        38 ~m~ItiTe~Aa~~lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy  117 (145)
T 2d2a_A           38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF  117 (145)
T ss_dssp             CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             cceEEECHHHHHHHHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence            67799999999999999974   357999999999999999999998888999999999999999 59999999999999


Q ss_pred             cccc-ccceeec
Q psy7477         101 SAST-LKDLVIH  111 (237)
Q Consensus       101 ~~~~-~~~i~IT  111 (237)
                      .++. ...+.+.
T Consensus       118 ~e~l~g~gF~f~  129 (145)
T 2d2a_A          118 VREGLNQIFKFH  129 (145)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EcCCCcceEEEe
Confidence            9874 4567664

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=99.83  E-value=1.3e-21  Score=151.25  Aligned_cols=92  Identities=26%  Similarity=0.428  Sum_probs=81.1

Q ss_pred             CCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCCCC
Q psy7477          22 ASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSSPS   96 (237)
Q Consensus        22 ~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~g~   96 (237)
                      +.+.++|+|||+|+++|++++++    +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|||+ .+++||.|+
T Consensus         3 ~~~~~~i~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~   82 (114)
T 2apn_A            3 DDMAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGG   82 (114)
T ss_dssp             SSSCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTC
T ss_pred             ccCcCcEEECHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCC
Confidence            45567799999999999999964    3589999999999999999999988788999999999999995 999999999


Q ss_pred             CCCCcccc-ccceeechH
Q psy7477          97 EKPVSAST-LKDLVIHDS  113 (237)
Q Consensus        97 ~IDy~~~~-~~~i~IT~~  113 (237)
                      +|||.++. ...+.+...
T Consensus        83 ~IDy~~~~~g~~F~~~nP  100 (114)
T 2apn_A           83 TVDYTEGLEGSRFTVNNP  100 (114)
T ss_dssp             EEEEECSSSCCEEEEECH
T ss_pred             EEEEEcCCCcceEEEeCC
Confidence            99999884 467777543

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=99.83  E-value=4.7e-21  Score=149.22  Aligned_cols=86  Identities=21%  Similarity=0.328  Sum_probs=77.1

Q ss_pred             cceeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCc
Q psy7477          26 KDLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVS  101 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~  101 (237)
                      |+|+|||+|+++|++++++   +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||.
T Consensus         1 M~I~iT~~A~~~l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~IDy~   80 (118)
T 1r94_A            1 MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFV   80 (118)
T ss_dssp             CCCEECHHHHHHHHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEE
T ss_pred             CceEECHHHHHHHHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEEEE
Confidence            5799999999999999964   367999999999999999999988888999999999999999 599999999999999


Q ss_pred             ccc-ccceeec
Q psy7477         102 AST-LKDLVIH  111 (237)
Q Consensus       102 ~~~-~~~i~IT  111 (237)
                      ++. ...+++.
T Consensus        81 ~~~~g~gF~~~   91 (118)
T 1r94_A           81 KEGLNEGFKFT   91 (118)
T ss_dssp             EETTEEEEEEE
T ss_pred             cCCCcCceEEe
Confidence            874 3466664

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=99.80  E-value=7.4e-21  Score=146.70  Aligned_cols=85  Identities=18%  Similarity=0.271  Sum_probs=74.4

Q ss_pred             ceeeCHHHHHHHHHHhhCC------CcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCC
Q psy7477          27 DLVIHDSCIKKLKEISTDG------SFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKP   99 (237)
Q Consensus        27 ~itlT~~A~~~i~~l~~~~------~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~ID   99 (237)
                      ||+|||+|+++|+++++++      .+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++||
T Consensus         1 mi~iT~~A~~~l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~ID   80 (112)
T 1x0g_A            1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD   80 (112)
T ss_dssp             CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred             CeEECHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCEEE
Confidence            6999999999999998643      37999999999999999999999888999999999999999 5999999999999


Q ss_pred             Ccccc-ccceeec
Q psy7477         100 VSAST-LKDLVIH  111 (237)
Q Consensus       100 y~~~~-~~~i~IT  111 (237)
                      |.++. ...+.+.
T Consensus        81 y~~~~~g~gF~~~   93 (112)
T 1x0g_A           81 YIEDLMGGAFRFH   93 (112)
T ss_dssp             EEEETTEEEEEEE
T ss_pred             EEecCCCCEEEEe
Confidence            99874 4567664

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.70  E-value=1.3e-17  Score=131.09  Aligned_cols=87  Identities=11%  Similarity=0.188  Sum_probs=75.5

Q ss_pred             CCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEe--cCCCCceeEEEeecCCCCCCCeEEEeCCeEeeec-CccccCC
Q psy7477          22 ASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVE--GGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPTL-SPYSTSS   94 (237)
Q Consensus        22 ~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~--~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i~-~s~~~l~   94 (237)
                      ....++|+||++|+++|++++++    +.+|||+|+  ++|  ||+|.|.|+++ .++|.+++.+|++|+|+ .+++||+
T Consensus        17 ~~~~m~ItiT~~Aa~~ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~   93 (125)
T 2k4z_A           17 RGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLD   93 (125)
T ss_dssp             CCCSSCEEECHHHHHHHHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHT
T ss_pred             cCCCCEEEECHHHHHHHHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhC
Confidence            34568899999999999999974    257999999  889  99999999987 88999999999999994 9999999


Q ss_pred             CCCCCCcc-cc-ccceeec
Q psy7477          95 PSEKPVSA-ST-LKDLVIH  111 (237)
Q Consensus        95 g~~IDy~~-~~-~~~i~IT  111 (237)
                      |++|||.+ +. ...+.+.
T Consensus        94 G~~IDy~~~~l~g~gF~~~  112 (125)
T 2k4z_A           94 QTTLDYVELEPGQFHFIFL  112 (125)
T ss_dssp             TEEEEEEEEETTEEEEEEE
T ss_pred             CCEEEEEeCCCCcCeEEEC
Confidence            99999998 53 3455554

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.70  E-value=1.9e-17  Score=130.60  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=82.8

Q ss_pred             cceeechHHHHHHHHHhcCC---CceEEEEecC-------CCCc-ceeeEEecCCCCC----CCeEEEeCCeEEEEcCCc
Q psy7477         106 KDLVIHDSCIKKLKEISTDG---SFLRIIVEGG-------GCSG-FQYKFELDTQVSD----EDRVYEKSGCKVVIDQTS  170 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~~---~~lRi~v~~~-------GCsG-~~y~l~~~~~~~~----~D~v~~~~Gi~v~id~~s  170 (237)
                      |.|++|++|+++|++++++.   .+||+. +++       ||+| ..|.|.+++++.+    .|.+++.+|++|+||+.+
T Consensus         3 M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~s   81 (128)
T 2p2e_A            3 LKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYS   81 (128)
T ss_dssp             CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGG
T ss_pred             cEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcch
Confidence            56999999999999999753   468888 666       7999 6999999887777    899999999999999999


Q ss_pred             cccccC-cEEEEEecC----ccce-eEEeeCCCCCC
Q psy7477         171 LEYVQG-SVIEYHQEL----IRSA-FQISNNPQVEQ  200 (237)
Q Consensus       171 ~~~L~g-~~IDy~e~~----~g~g-F~i~~nP~~~~  200 (237)
                      +.||+| ++|||+++.    .+++ |.| .|||++.
T Consensus        82 ~~~ldgg~~iDy~~~~~~l~L~s~~f~~-~NPN~~~  116 (128)
T 2p2e_A           82 KMYMDDNMKISLNTNNSLLRLTGDNSGE-LMPALSI  116 (128)
T ss_dssp             GGGSCSEEEEEECSSSSCEEEEETTTEE-EEEEECE
T ss_pred             HHhhCCCeEEEEeCCCceEEecCCccEE-ECCCCee
Confidence            999996 999999998    8899 996 8999864

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.65  E-value=4.9e-17  Score=130.09  Aligned_cols=88  Identities=16%  Similarity=0.323  Sum_probs=69.4

Q ss_pred             ccceeechHHHHHHHHHhcCC--Cce-------EEEEecCCCC-cceeeEEecCCCCCC-CeEEEeC-CeEEEEcCCccc
Q psy7477         105 LKDLVIHDSCIKKLKEISTDG--SFL-------RIIVEGGGCS-GFQYKFELDTQVSDE-DRVYEKS-GCKVVIDQTSLE  172 (237)
Q Consensus       105 ~~~i~IT~~A~~~l~~~l~~~--~~l-------Ri~v~~~GCs-G~~y~l~~~~~~~~~-D~v~~~~-Gi~v~id~~s~~  172 (237)
                      +|.|+||++|++||+++++..  .+|       |+.+.++||+ |++|.|.+++++.++ |.+++.+ |++|+||+.++|
T Consensus         3 ~M~ItlTd~Aa~~ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl~   82 (141)
T 2qgo_A            3 LLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDKT   82 (141)
T ss_dssp             -CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHHT
T ss_pred             ceEEEECHHHHHHHHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHHH
Confidence            467999999999999999753  567       9999999999 999999999888889 9999999 599999999999


Q ss_pred             ccc-CcEEEEEecCccceeEEeeCCC
Q psy7477         173 YVQ-GSVIEYHQELIRSAFQISNNPQ  197 (237)
Q Consensus       173 ~L~-g~~IDy~e~~~g~gF~i~~nP~  197 (237)
                      ||+ |++|||+++    .|.+ ++|.
T Consensus        83 yLd~G~~IDy~~~----~l~L-ks~s  103 (141)
T 2qgo_A           83 MLGPNMVMDYNAG----SLSL-SSDE  103 (141)
T ss_dssp             TSCSSEEEEEETT----EEEE-EETT
T ss_pred             HhcCCCEEeEECC----EEEE-cCCC
Confidence            999 999999965    6765 5543

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.65  E-value=1.5e-17  Score=133.12  Aligned_cols=80  Identities=19%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             CcceeeCHHHHHHHHHHhhCC--CcE-------EEEEecCCCC-ceeEEEeecCCCCCC-CeEEEeC-CeEeee-cCccc
Q psy7477          25 LKDLVIHDSCIKKLKEISTDG--SFL-------RIIVEGGGCS-GFQYKFELDTQVSDE-DRVYEKS-GCKIPT-LSPYS   91 (237)
Q Consensus        25 ~~~itlT~~A~~~i~~l~~~~--~~l-------Ri~v~~gGCs-G~~Y~l~~~~~~~~~-D~~~~~~-g~~v~i-~~s~~   91 (237)
                      ||.|+||++|+++|++++..+  .+|       |+.|++|||+ |++|.|.|++++.++ |.+++.+ |++||| +.+++
T Consensus         3 ~M~ItlTd~Aa~~ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~sl~   82 (141)
T 2qgo_A            3 LLNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDKT   82 (141)
T ss_dssp             -CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHHT
T ss_pred             ceEEEECHHHHHHHHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchHHH
Confidence            577999999999999999864  468       9999999999 999999999988888 9999999 599999 59999


Q ss_pred             cCC-CCCCCCcccc
Q psy7477          92 TSS-PSEKPVSAST  104 (237)
Q Consensus        92 ~l~-g~~IDy~~~~  104 (237)
                      ||+ |++|||.+++
T Consensus        83 yLd~G~~IDy~~~~   96 (141)
T 2qgo_A           83 MLGPNMVMDYNAGS   96 (141)
T ss_dssp             TSCSSEEEEEETTE
T ss_pred             HhcCCCEEeEECCE
Confidence            999 9999999763

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.57  E-value=2.6e-15  Score=118.32  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=69.4

Q ss_pred             CcceeeCHHHHHHHHHHhhCC---CcEEEEEecC-------CCCc-eeEEEeecCCCCC----CCeEEEeCCeEeee-cC
Q psy7477          25 LKDLVIHDSCIKKLKEISTDG---SFLRIIVEGG-------GCSG-FQYKFELDTQVSD----EDRVYEKSGCKIPT-LS   88 (237)
Q Consensus        25 ~~~itlT~~A~~~i~~l~~~~---~~lRi~v~~g-------GCsG-~~Y~l~~~~~~~~----~D~~~~~~g~~v~i-~~   88 (237)
                      .|.|+|||+|+++|++++++.   .+||+. +++       ||+| +.|.|.|++++.+    +|.+++.+|++||| +.
T Consensus         2 ~M~ItlT~~A~~~l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd~~   80 (128)
T 2p2e_A            2 SLKITVTDDAAKKLQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGY   80 (128)
T ss_dssp             -CEEEECHHHHHHHHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred             ccEEEECHHHHHHHHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEECcc
Confidence            467999999999999999863   368988 666       7999 6999999988777    89999999999999 59


Q ss_pred             ccccCCC-CCCCCcccc
Q psy7477          89 PYSTSSP-SEKPVSAST  104 (237)
Q Consensus        89 s~~~l~g-~~IDy~~~~  104 (237)
                      +++||+| ++|||.++.
T Consensus        81 s~~~ldgg~~iDy~~~~   97 (128)
T 2p2e_A           81 SKMYMDDNMKISLNTNN   97 (128)
T ss_dssp             GGGGSCSEEEEEECSSS
T ss_pred             hHHhhCCCeEEEEeCCC
Confidence            9999996 999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	237
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	4e-18
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	2e-07
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	5e-17
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	1e-04

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 74.6 bits (183), Expect = 4e-18
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 110 IHDSCIKKLKEI---STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVI 166
           + DS   ++         G  LR+ V   GCSG  Y  E   + + ED V+E  G KVV+
Sbjct: 4   LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVV 63

Query: 167 DQTSLEYVQGSVIEYHQELIRSAFQISNNPQV 198
           D  S++++ G+ +++ +E +   F+   NP V
Sbjct: 64  DGKSMQFLDGTQLDFVKEGLNEGFKF-TNPNV 94

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 45.4 bits (107), Expect = 2e-07
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 30 IHDSCIKKLKEI---STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          + DS   ++         G  LR+ V   GCSG  Y  E   + + ED V+E  G K+
Sbjct: 4  LSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 61

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 71.7 bits (175), Expect = 5e-17
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 110 IHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVV 165
           + D  ++++K++    + +   LRI V  GGCSGFQY    D  V + D V+E  G KVV
Sbjct: 12  VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVV 71

Query: 166 IDQTSLEYVQGSVIEYHQELIRSAFQISNNP 196
           ID  S+ YV G+ ++Y  + +   F I  NP
Sbjct: 72  IDPFSMPYVNGAELDYVVDFMGGGFTI-RNP 101

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.8 bits (87), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 30 IHDSCIKKLKEI----STDGSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKI 84
          + D  ++++K++    + +   LRI V  GGCSGFQY    D  V + D V+E  G K+
Sbjct: 12 VTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKV 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	237
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.92
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.9
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.83
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.82
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	98.25
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	97.93

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.4e-25  Score=167.39  Aligned_cols=93  Identities=30%  Similarity=0.615  Sum_probs=87.6

Q ss_pred             ceeechHHHHHHHHHhcC---CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEEEEe
Q psy7477         107 DLVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIEYHQ  183 (237)
Q Consensus       107 ~i~IT~~A~~~l~~~l~~---~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~IDy~e  183 (237)
                      .|+||++|+++|++++++   +.+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.++.||+|++|||++
T Consensus         1 ~I~iT~~A~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~~   80 (97)
T d1s98a_           1 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVK   80 (97)
T ss_dssp             CCEECHHHHHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEEC
T ss_pred             CEEECHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEEee
Confidence            378999999999999974   36899999999999999999999888899999999999999999999999999999999


Q ss_pred             cCccceeEEeeCCCCCC
Q psy7477         184 ELIRSAFQISNNPQVEQ  200 (237)
Q Consensus       184 ~~~g~gF~i~~nP~~~~  200 (237)
                      +..++||+| +|||+++
T Consensus        81 ~~~~~gF~f-~NPNak~   96 (97)
T d1s98a_          81 EGLNEGFKF-TNPNVKD   96 (97)
T ss_dssp             SSTTCEEEE-ECTTSCC
T ss_pred             cCCcCceEE-ECCCCCC
Confidence            999999996 9999986

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.90  E-value=2.2e-24  Score=161.82  Aligned_cols=91  Identities=37%  Similarity=0.716  Sum_probs=85.8

Q ss_pred             ccceeechHHHHHHHHHhcC----CCceEEEEecCCCCcceeeEEecCCCCCCCeEEEeCCeEEEEcCCccccccCcEEE
Q psy7477         105 LKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKVVIDQTSLEYVQGSVIE  180 (237)
Q Consensus       105 ~~~i~IT~~A~~~l~~~l~~----~~~lRi~v~~~GCsG~~y~l~~~~~~~~~D~v~~~~Gi~v~id~~s~~~L~g~~ID  180 (237)
                      ..||+||++|+++|++++++    +.+|||.|+++||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++||
T Consensus         7 ~~mi~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~~ID   86 (101)
T d1nwba_           7 QFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGAELD   86 (101)
T ss_dssp             CCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTCEEE
T ss_pred             CCcEEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCCEEE
Confidence            57899999999999999974    36899999999999999999999878899999999999999999999999999999


Q ss_pred             EEecCccceeEEeeCC
Q psy7477         181 YHQELIRSAFQISNNP  196 (237)
Q Consensus       181 y~e~~~g~gF~i~~nP  196 (237)
                      |+++..++||+| +||
T Consensus        87 y~~~~~~~~F~f-~NP  101 (101)
T d1nwba_          87 YVVDFMGGGFTI-RNP  101 (101)
T ss_dssp             EEEETTEEEEEE-ECC
T ss_pred             EeecCCCCeEEE-eCc
Confidence            999999999996 998

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.83  E-value=1.2e-21  Score=146.75  Aligned_cols=90  Identities=26%  Similarity=0.421  Sum_probs=79.3

Q ss_pred             CCCCcceeeCHHHHHHHHHHhhC----CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCC
Q psy7477          22 ASTLKDLVIHDSCIKKLKEISTD----GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPS   96 (237)
Q Consensus        22 ~~~~~~itlT~~A~~~i~~l~~~----~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~   96 (237)
                      +.+..||+||++|+++|++++++    +.+|||+|+++||+||+|.|.+++++.++|.+++.+|++|+| +.+++||.|+
T Consensus         4 ~~~~~mi~iT~~A~~~i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G~   83 (101)
T d1nwba_           4 QAQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNGA   83 (101)
T ss_dssp             CCCCCCCEECHHHHHHHHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTTC
T ss_pred             cccCCcEEECHHHHHHHHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCCC
Confidence            34568899999999999999975    357999999999999999999998888999999999999999 5999999999


Q ss_pred             CCCCcccc-ccceeec
Q psy7477          97 EKPVSAST-LKDLVIH  111 (237)
Q Consensus        97 ~IDy~~~~-~~~i~IT  111 (237)
                      +|||.++. ...|+++
T Consensus        84 ~IDy~~~~~~~~F~f~   99 (101)
T d1nwba_          84 ELDYVVDFMGGGFTIR   99 (101)
T ss_dssp             EEEEEEETTEEEEEEE
T ss_pred             EEEEeecCCCCeEEEe
Confidence            99999864 3456553

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=6.7e-21  Score=141.63  Aligned_cols=87  Identities=21%  Similarity=0.333  Sum_probs=77.0

Q ss_pred             eeeCHHHHHHHHHHhhC---CCcEEEEEecCCCCceeEEEeecCCCCCCCeEEEeCCeEeee-cCccccCCCCCCCCccc
Q psy7477          28 LVIHDSCIKKLKEISTD---GSFLRIIVEGGGCSGFQYKFELDTQVSDEDRVYEKSGCKIPT-LSPYSTSSPSEKPVSAS  103 (237)
Q Consensus        28 itlT~~A~~~i~~l~~~---~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~i-~~s~~~l~g~~IDy~~~  103 (237)
                      |+|||+|+++|++++++   +.+|||+|+++||+||+|.|.|++++.++|.+++.+|++|+| +.+++||.|++|||.++
T Consensus         2 I~iT~~A~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~IDy~~~   81 (97)
T d1s98a_           2 ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLDFVKE   81 (97)
T ss_dssp             CEECHHHHHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEEECS
T ss_pred             EEECHHHHHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEEEeec
Confidence            89999999999999975   357999999999999999999998888999999999999999 59999999999999987


Q ss_pred             c-ccceee-chHH
Q psy7477         104 T-LKDLVI-HDSC  114 (237)
Q Consensus       104 ~-~~~i~I-T~~A  114 (237)
                      . ...+.+ .|+|
T Consensus        82 ~~~~gF~f~NPNa   94 (97)
T d1s98a_          82 GLNEGFKFTNPNV   94 (97)
T ss_dssp             STTCEEEEECTTS
T ss_pred             CCcCceEEECCCC
Confidence            4 355655 3444

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=98.25  E-value=3e-06  Score=63.57  Aligned_cols=89  Identities=18%  Similarity=0.267  Sum_probs=68.3

Q ss_pred             cceeechHHHHHHHHHhcC-CCceEEEEe--------cCCCC-cceeeEEecCC----CCCCCeEEEeCCeEEEEcCCcc
Q psy7477         106 KDLVIHDSCIKKLKEISTD-GSFLRIIVE--------GGGCS-GFQYKFELDTQ----VSDEDRVYEKSGCKVVIDQTSL  171 (237)
Q Consensus       106 ~~i~IT~~A~~~l~~~l~~-~~~lRi~v~--------~~GCs-G~~y~l~~~~~----~~~~D~v~~~~Gi~v~id~~s~  171 (237)
                      |.|+||++|+++|++.+.+ ++.|.+.+.        ++||+ |-.|.+.+.++    ..+-|+.++.+-.++++.+...
T Consensus         1 M~ItiT~~A~~~L~~~~~~~~~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~~~   80 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYSK   80 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCTTEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGGG
T ss_pred             CEEEECHHHHHHHHHhhCCCCCEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEcccch
Confidence            5699999999999999875 455777665        57885 55788888643    2356788999988999999999


Q ss_pred             ccccC-cEEEEEecCccceeEEeeCCC
Q psy7477         172 EYVQG-SVIEYHQELIRSAFQISNNPQ  197 (237)
Q Consensus       172 ~~L~g-~~IDy~e~~~g~gF~i~~nP~  197 (237)
                      .||++ ++|||.+..  .-|.+ +.|+
T Consensus        81 ~ffd~~m~ld~~~~~--~~l~L-kSd~  104 (118)
T d2p2ea1          81 MYMDDNMKISLNTNN--SLLRL-TGDN  104 (118)
T ss_dssp             GGSCSEEEEEECSSS--SCEEE-EETT
T ss_pred             hhcCCCcEEEEcCCC--CEEEE-eCCC
Confidence            99996 799998663  45654 4443

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=97.93  E-value=1e-05  Score=60.59  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=57.7

Q ss_pred             cceeeCHHHHHHHHHHhhCC-CcEEEEEe--------cCCCC-ceeEEEeecCC----CCCCCeEEEeCCeEeee-c-Cc
Q psy7477          26 KDLVIHDSCIKKLKEISTDG-SFLRIIVE--------GGGCS-GFQYKFELDTQ----VSDEDRVYEKSGCKIPT-L-SP   89 (237)
Q Consensus        26 ~~itlT~~A~~~i~~l~~~~-~~lRi~v~--------~gGCs-G~~Y~l~~~~~----~~~~D~~~~~~g~~v~i-~-~s   89 (237)
                      |.||||++|+++|++.+.+. ..|.+...        ++||+ |-.|.+-++++    ..+.|..++.+-.+||+ + ..
T Consensus         1 M~ItiT~~A~~~L~~~~~~~~~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~~~   80 (118)
T d2p2ea1           1 LKITVTDDAAKKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGYSK   80 (118)
T ss_dssp             CEEEECHHHHHHHHHHHTCTTEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGGG
T ss_pred             CEEEECHHHHHHHHHhhCCCCCEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEcccch
Confidence            46999999999999999764 44666655        57886 45778877653    23467899999889999 5 44


Q ss_pred             cccCCCCCCCCccc
Q psy7477          90 YSTSSPSEKPVSAS  103 (237)
Q Consensus        90 ~~~l~g~~IDy~~~  103 (237)
                      ..+=++++|||.+.
T Consensus        81 ~ffd~~m~ld~~~~   94 (118)
T d2p2ea1          81 MYMDDNMKISLNTN   94 (118)
T ss_dssp             GGSCSEEEEEECSS
T ss_pred             hhcCCCcEEEEcCC
Confidence            44556678998765