Psyllid ID: psy7523

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccc
mhngqltamnyheedwldgnfsadgnasvfayppkrdalyIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWsrypyvfgeTFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYlfslavsdllllvtglPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
**********YHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAI***
*********NYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
****************************VFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoo
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
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MHNGQLTAMNYHEEDWLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
Q8ITC7 477 Neuropeptides capa recept no N/A 0.932 0.350 0.446 3e-33
Q8BZ39 395 Neuromedin-U receptor 2 O yes N/A 0.798 0.362 0.427 9e-29
Q9GZQ4 415 Neuromedin-U receptor 2 O yes N/A 0.905 0.390 0.396 1e-28
Q9ESQ4 395 Neuromedin-U receptor 2 O yes N/A 0.798 0.362 0.427 5e-28
O55040 405 Neuromedin-U receptor 1 O no N/A 0.754 0.333 0.429 9e-27
Q58CW4 407 Neuromedin-U receptor 2 O yes N/A 0.793 0.348 0.437 1e-26
O43193 412 Motilin receptor OS=Homo no N/A 0.770 0.334 0.431 3e-22
Q9HB89 426 Neuromedin-U receptor 1 O no N/A 0.793 0.333 0.437 6e-21
Q95254 366 Growth hormone secretagog no N/A 0.804 0.393 0.354 6e-20
A5A4K9 366 Growth hormone secretagog no N/A 0.804 0.393 0.354 7e-20
>sp|Q8ITC7|CAPAR_DROME Neuropeptides capa receptor OS=Drosophila melanogaster GN=capaR PE=2 SV=3 Back     alignment and function desciption
 Score =  141 bits (355), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 106/168 (63%), Gaps = 1/168 (0%)

Query: 11  YHEEDWLDGNFSADGNASV-FAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIAR 69
           + EED+  G F+      V F   P+   LY  + +T ++  I  TG++GN++ CIVI R
Sbjct: 36  FGEEDYACGTFNCSPKEFVAFVLGPQTLPLYKAVLITIIFGGIFITGVVGNLLVCIVIIR 95

Query: 70  NKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANA 129
           +  MH ATNYYLFSLAVSDLL L+ GLP E++  W +YP +FG  FC +R   +E     
Sbjct: 96  HSAMHTATNYYLFSLAVSDLLYLLFGLPTEVFLYWHQYPDLFGMPFCKIRAFISEACTYV 155

Query: 130 TVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIP 177
           +V TI AF++ER+ AICHP   +++    RAIR+I  +WI+S + AIP
Sbjct: 156 SVFTIVAFSMERFLAICHPLHLYAMVGFKRAIRIITALWIVSFISAIP 203
Acts as a receptor for the neuropeptides CAP-1 and CAP-2, but not CAP-3. Probably a component of signal transduction pathway that leads to Malpighian tubule fluid secretion in response to these ligands.
Drosophila melanogaster (taxid: 7227)
>sp|Q8BZ39|NMUR2_MOUSE Neuromedin-U receptor 2 OS=Mus musculus GN=Nmur2 PE=2 SV=1 Back     alignment and function description
>sp|Q9GZQ4|NMUR2_HUMAN Neuromedin-U receptor 2 OS=Homo sapiens GN=NMUR2 PE=2 SV=2 Back     alignment and function description
>sp|Q9ESQ4|NMUR2_RAT Neuromedin-U receptor 2 OS=Rattus norvegicus GN=Nmur2 PE=1 SV=2 Back     alignment and function description
>sp|O55040|NMUR1_MOUSE Neuromedin-U receptor 1 OS=Mus musculus GN=Nmur1 PE=2 SV=1 Back     alignment and function description
>sp|Q58CW4|NMUR2_BOVIN Neuromedin-U receptor 2 OS=Bos taurus GN=NMUR2 PE=2 SV=1 Back     alignment and function description
>sp|O43193|MTLR_HUMAN Motilin receptor OS=Homo sapiens GN=MLNR PE=2 SV=1 Back     alignment and function description
>sp|Q9HB89|NMUR1_HUMAN Neuromedin-U receptor 1 OS=Homo sapiens GN=NMUR1 PE=2 SV=1 Back     alignment and function description
>sp|Q95254|GHSR_PIG Growth hormone secretagogue receptor type 1 OS=Sus scrofa GN=GHSR PE=2 SV=1 Back     alignment and function description
>sp|A5A4K9|GHSR_RABIT Growth hormone secretagogue receptor type 1 OS=Oryctolagus cuniculus GN=GHSR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
398314271 444 pyrokinin-1 receptor variant B [Rhodnius 0.905 0.364 0.716 8e-64
398314269 345 pyrokinin-1 receptor variant A [Rhodnius 0.905 0.469 0.716 1e-63
398314273 414 pyrokinin-1 receptor variant C [Rhodnius 0.905 0.391 0.716 1e-63
118780947 493 AGAP000658-PA [Anopheles gambiae str. PE 0.871 0.316 0.726 2e-62
71841593 344 pk-1 receptor [Anopheles gambiae] 0.871 0.453 0.726 3e-62
62528999 373 pyrokinin-like receptor 1 [Anopheles gam 0.871 0.418 0.726 6e-62
157133569 374 g-protein receptor [Aedes aegypti] 0.916 0.438 0.649 7e-62
312379232 448 hypothetical protein AND_08986 [Anophele 0.821 0.328 0.734 3e-61
170056730271 neuromedin-U receptor 1 [Culex quinquefa 0.821 0.542 0.721 7e-60
403183308 310 AAEL012796-PA, partial [Aedes aegypti] 0.810 0.467 0.717 3e-59
>gi|398314271|gb|AFO73270.1| pyrokinin-1 receptor variant B [Rhodnius prolixus] Back     alignment and taxonomy information
 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 116/162 (71%), Positives = 136/162 (83%)

Query: 17  LDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNA 76
           +D    +  N +V    PKRD LYIVIP+T LYS I  TG++GNV TC+VIARN+HMH A
Sbjct: 1   MDSGIESFTNETVSVRFPKRDPLYIVIPITILYSTIFVTGIVGNVSTCVVIARNRHMHTA 60

Query: 77  TNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITA 136
           TNYYLFSLAVSDLLLL+TGLP E+YYIWSRYPYVFGE FC+LRGLAAETSANATVLTITA
Sbjct: 61  TNYYLFSLAVSDLLLLITGLPQEMYYIWSRYPYVFGEAFCLLRGLAAETSANATVLTITA 120

Query: 137 FTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
           FT+ERY AICHPF +H++SKLSRA++ IL IW+++L  AIPQ
Sbjct: 121 FTIERYVAICHPFLAHTMSKLSRAVKFILAIWVVALAFAIPQ 162

Source: Rhodnius prolixus

Species: Rhodnius prolixus

Genus: Rhodnius

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|398314269|gb|AFO73269.1| pyrokinin-1 receptor variant A [Rhodnius prolixus] Back     alignment and taxonomy information
>gi|398314273|gb|AFO73271.1| pyrokinin-1 receptor variant C [Rhodnius prolixus] Back     alignment and taxonomy information
>gi|118780947|ref|XP_311184.3| AGAP000658-PA [Anopheles gambiae str. PEST] gi|34419232|tpg|DAA01375.1| TPA_exp: putative pyrokinin receptor [Anopheles gambiae str. PEST] gi|116130188|gb|EAA06972.3| AGAP000658-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|71841593|gb|AAZ43087.1| pk-1 receptor [Anopheles gambiae] Back     alignment and taxonomy information
>gi|62528999|gb|AAX84797.1| pyrokinin-like receptor 1 [Anopheles gambiae] Back     alignment and taxonomy information
>gi|157133569|ref|XP_001662936.1| g-protein receptor [Aedes aegypti] Back     alignment and taxonomy information
>gi|312379232|gb|EFR25574.1| hypothetical protein AND_08986 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170056730|ref|XP_001864163.1| neuromedin-U receptor 1 [Culex quinquefasciatus] gi|167876450|gb|EDS39833.1| neuromedin-U receptor 1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|403183308|gb|EAT35008.2| AAEL012796-PA, partial [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
FB|FBgn0038201 430 Pk1r "Pyrokinin 1 receptor" [D 0.854 0.355 0.597 1.3e-45
FB|FBgn0038139 599 CG8795 [Drosophila melanogaste 0.888 0.265 0.458 2.2e-34
FB|FBgn0038140 660 CG8784 [Drosophila melanogaste 0.865 0.234 0.465 2.8e-33
FB|FBgn0037100 477 capaR "capa receptor" [Drosoph 0.932 0.350 0.369 3.8e-29
UNIPROTKB|E1BX29 395 NMUR2 "Neuromedin U receptor t 0.815 0.369 0.385 5.7e-27
ZFIN|ZDB-GENE-081104-220 395 si:ch211-276k2.5 "si:ch211-276 0.793 0.359 0.395 3.2e-26
WB|WBGene00019616 403 nmur-2 [Caenorhabditis elegans 0.765 0.339 0.427 5.9e-25
UNIPROTKB|E1BWP2 404 NMUR1 "Uncharacterized protein 0.793 0.351 0.361 7.6e-25
UNIPROTKB|Q58CW4 407 NMUR2 "Neuromedin-U receptor 2 0.793 0.348 0.354 9.7e-25
UNIPROTKB|E2RBT8 378 NMUR2 "Uncharacterized protein 0.815 0.386 0.364 1.1e-23
FB|FBgn0038201 Pk1r "Pyrokinin 1 receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 92/154 (59%), Positives = 112/154 (72%)

Query:    25 GNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYXXXX 84
             GN S    PP RD L IVIP+T +YSLI  TG++GN+ TCIVI +N+ MH ATNYY    
Sbjct:     4 GNMSHDLGPP-RDPLAIVIPVTVVYSLIFITGVVGNISTCIVIKKNRSMHTATNYYLFSL 62

Query:    85 XXXXXXXXXXXXPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFA 144
                         P E+ YIWS+YPYVFGE  C+ RGL AETSANATVLTITAFTVERY A
Sbjct:    63 AISDFLLLLSGVPQEVSYIWSKYPYVFGEYICIGRGLLAETSANATVLTITAFTVERYIA 122

Query:   145 ICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
             ICHPF   ++SKLSRAIR+I+++WI++++ AIPQ
Sbjct:   123 ICHPFLGQAMSKLSRAIRIIVLVWIMAIVTAIPQ 156
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0016520 "growth hormone-releasing hormone receptor activity" evidence=ISS
GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA;NAS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS;IDA
GO:0005887 "integral to plasma membrane" evidence=ISS
GO:0007218 "neuropeptide signaling pathway" evidence=IDA
FB|FBgn0038139 CG8795 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0038140 CG8784 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0037100 capaR "capa receptor" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BX29 NMUR2 "Neuromedin U receptor type 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081104-220 si:ch211-276k2.5 "si:ch211-276k2.5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00019616 nmur-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWP2 NMUR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58CW4 NMUR2 "Neuromedin-U receptor 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBT8 NMUR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
pfam00001 251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 5e-25
PHA03087 335 PHA03087, PHA03087, G protein-coupled chemokine re 6e-13
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 1e-09
PHA02834 323 PHA02834, PHA02834, chemokine receptor-like protei 2e-04
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 96.6 bits (241), Expect = 5e-25
 Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 1/115 (0%)

Query: 65  IVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAE 124
           +VI R K +   TN +L +LAV+DLL L+T  P  +YY+     + FG+  C L G    
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVG-GDWPFGDALCKLVGFLFV 59

Query: 125 TSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV 179
            +  A++L +TA +++RY AI HP     +    RA  LILV+W+++LL ++P +
Sbjct: 60  VNGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPL 114

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
KOG4219|consensus 423 99.95
PHA03234 338 DNA packaging protein UL33; Provisional 99.93
KOG4220|consensus 503 99.92
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.91
PHA03087 335 G protein-coupled chemokine receptor-like protein; 99.91
PHA03235 409 DNA packaging protein UL33; Provisional 99.9
PHA02834 323 chemokine receptor-like protein; Provisional 99.9
PF00001 257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.86
PF10320 257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.64
KOG2087|consensus 363 99.58
PF10328 274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.52
PF10324 318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.12
PF10323 283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.75
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.55
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 98.41
PF05296 303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.29
PF10321 313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 98.27
PF10316 273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 98.26
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 98.02
PF10317 292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 97.75
PF03402 265 V1R: Vomeronasal organ pheromone receptor family, 97.66
PF02118 275 Srg: Srg family chemoreceptor; InterPro: IPR000609 97.6
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 96.81
PF00002 242 7tm_2: 7 transmembrane receptor (Secretin family); 96.77
PF04789 305 DUF621: Protein of unknown function (DUF621); Inte 96.57
PF02117 328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 96.48
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 96.16
PF10318 302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 94.72
PF10326 307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 94.22
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 94.1
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 93.14
KOG4564|consensus 473 92.81
PF10327 303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 92.34
KOG4193|consensus 610 88.22
PF03125 365 Sre: C. elegans Sre G protein-coupled chemorecepto 86.98
PF10319 310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 85.42
>KOG4219|consensus Back     alignment and domain information 
Probab=99.95  E-value=2.4e-27  Score=182.71  Aligned_cols=143  Identities=27%  Similarity=0.511  Sum_probs=132.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhh
Q psy7523          34 PKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGE  113 (179)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~  113 (179)
                      ..+.+.+.+...+.++.++.++.++||.++++++...|++|+.+|+++.|||+||++.+.+..++...+...+ +|.+|.
T Consensus        27 ~f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~-~W~~G~  105 (423)
T KOG4219|consen   27 LFVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ-EWYFGS  105 (423)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-cccccc
Confidence            3455667777788899999999999999999999999999999999999999999999999999999888887 899999


Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCCC
Q psy7523         114 TFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV  179 (179)
Q Consensus       114 ~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~~  179 (179)
                      .+|++..++.....++|++++++||+|||.||.+|++.+  .++|..++.++++|+.+++.+.|..
T Consensus       106 f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~  169 (423)
T KOG4219|consen  106 FYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQL  169 (423)
T ss_pred             ceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccce
Confidence            999999999999999999999999999999999999854  7899999999999999999999963

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF03125 Sre: C Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
4grv_A 510 The Crystal Structure Of The Neurotensin Receptor N 2e-16
3kj6_A 366 Crystal Structure Of A Methylated Beta2 Adrenergic 9e-10
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 1e-09
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 1e-09
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 2e-09
2r4r_A 365 Crystal Structure Of The Human Beta2 Adrenoceptor L 3e-09
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 5e-09
2r4s_A 342 Crystal Structure Of The Human Beta2 Adrenoceptor L 1e-08
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 1e-08
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 2e-08
4gbr_A 309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 2e-08
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 4e-08
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 8e-07
4ea3_B 434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 2e-06
2x72_A 349 Crystal Structure Of The Constitutively Active E113 3e-05
3oax_A 349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 3e-05
1jfp_A 348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 3e-05
2j4y_A 349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 4e-05
3c9m_A 348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 4e-05
4a4m_A 349 Crystal Structure Of The Light-Activated Constituti 4e-05
2y00_B 315 Turkey Beta1 Adrenergic Receptor With Stabilising M 9e-05
2vt4_A 313 Turkey Beta1 Adrenergic Receptor With Stabilising M 9e-05
2ks9_A 364 Solution Conformation Of Substance P In Water Compl 8e-04
3pwh_A 329 Thermostabilised Adenosine A2a Receptor Length = 32 8e-04
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In Complex With Neurotensin (8-13) Length = 510 Back     alignment and structure 
Iteration: 1

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 39  LYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHN---ATNYYXXXXXXXXXXXXXXX 95
           +Y  + +TA+Y  +   G +GN VT   +AR K + +     +Y+               
Sbjct: 29  IYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLA 88
Query: 96  XPVEIY-YIWSRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSL 154
            PVE+Y +IW  +P+ FG+  C       +    AT L + + +V RY AICHPF + +L
Sbjct: 89  MPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTL 148
Query: 155 SKLSRAIRLILVIWIISLLCAIPQV 179
              SR  + I  IW+ S L AIP +
Sbjct: 149 MSRSRTKKFISAIWLASALLAIPML 173
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 7e-41
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 2e-35
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 4e-32
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 4e-31
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 3e-29
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-27
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 5e-25
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 2e-24
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 3e-24
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 3e-24
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 5e-24
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 2e-23
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 4e-23
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 5e-23
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 8e-22
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  140 bits (354), Expect = 7e-41
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 3/163 (1%)

Query: 16  WLDGNFSADGNASVFAYPPKRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHN 75
            +D + S + + +           + ++   A Y++I+ T ++GNVV   +I  +K M  
Sbjct: 6   PVDSDLSPNISTNTSEPNQFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRT 65

Query: 76  ATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGETFCVLRGLAAETSANATVLTIT 135
            TNY+L +LA ++  +      V   Y      + +G  +C         +  A++ ++T
Sbjct: 66  VTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE-WYYGLFYCKFHNFFPIAAVFASIYSMT 124

Query: 136 AFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ 178
           A   +RY AI HP         +    +I VIW+++LL A PQ
Sbjct: 125 AVAFDRYMAIIHPL--QPRLSATATKVVICVIWVLALLLAFPQ 165
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.96
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.95
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.95
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.95
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.95
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.94
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.94
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.94
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.94
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.93
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.93
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.93
2lnl_A 296 C-X-C chemokine receptor type 1; G protein coupled 99.93
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.93
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.93
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.93
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.93
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.92
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.79
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 97.04
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.96  E-value=6.9e-29  Score=202.85  Aligned_cols=142  Identities=37%  Similarity=0.655  Sum_probs=126.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCC---chHHHHHHHHHHHHHHHHhhhhHHHHHHHHh-cCCCchhh
Q psy7523          38 ALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMH---NATNYYLFSLAVSDLLLLVTGLPVEIYYIWS-RYPYVFGE  113 (179)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~---~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~-~~~~~~~~  113 (179)
                      .....+....+|.+++++|++||+++++++.++|++|   +++|+|++|||++|++.+++.+|..+..... ..+|.+|+
T Consensus        28 ~~~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~  107 (510)
T 4grv_A           28 DIYSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGD  107 (510)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhH
Confidence            4455666778899999999999999999998876544   7889999999999999999999998877653 45699999


Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCCC
Q psy7523         114 TFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQV  179 (179)
Q Consensus       114 ~~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~~  179 (179)
                      ..|++..++..++.++|++++++||+|||+||++|++|++.++++++..+++++|++++++++|++
T Consensus       108 ~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~  173 (510)
T 4grv_A          108 AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPML  173 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999863
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 4e-14
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.9 bits (162), Expect = 4e-14
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 1/134 (0%)

Query: 45  MTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIW 104
           + A   L++  G   N +T  V  ++K +    NY L +LAV+DL ++  G    +Y   
Sbjct: 40  LAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL 99

Query: 105 SRYPYVFGETFCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLI 164
             Y +VFG T C L G  A       + ++    +ERY  +C P  +    +    + + 
Sbjct: 100 HGY-FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVA 158

Query: 165 LVIWIISLLCAIPQ 178
               +     A P 
Sbjct: 159 FTWVMALACAAPPL 172

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.91
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=5.1e-23  Score=157.69  Aligned_cols=142  Identities=26%  Similarity=0.502  Sum_probs=123.7

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHhhccCCCCchHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCchhhh
Q psy7523          35 KRDALYIVIPMTALYSLILFTGLIGNVVTCIVIARNKHMHNATNYYLFSLAVSDLLLLVTGLPVEIYYIWSRYPYVFGET  114 (179)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~g~i~N~~vi~~~~~~~~~~~~~~~~l~~Lai~dl~~~~~~~p~~~~~~~~~~~~~~~~~  114 (179)
                      ...+.+....++.++.+++++|++||++++.++.++|++|++.|+++.|||++|++.++...|..+.....+ .|..+..
T Consensus        30 ~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~-~~~~~~~  108 (348)
T d1u19a_          30 YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHG-YFVFGPT  108 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT-SCTTHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccC-ccccCch
Confidence            334455666777889999999999999999999999999999999999999999999999888888777766 5677899


Q ss_pred             hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccchhhhhhhhHHhhHHHHhhhcCC
Q psy7523         115 FCVLRGLAAETSANATVLTITAFTVERYFAICHPFWSHSLSKLSRAIRLILVIWIISLLCAIPQ  178 (179)
Q Consensus       115 ~C~~~~~~~~~~~~~s~~~~~~ia~~R~~~v~~p~~~~~~~~~~~~~~~~~~~w~~~~~~~~p~  178 (179)
                      .|+...+....+..++.+.++++++|||.++++|++|+.. ++++....+..+|..+.+...|+
T Consensus       109 ~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  171 (348)
T d1u19a_         109 GCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPP  171 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGG
T ss_pred             hhhhhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheeccc
Confidence            9999999999999999999999999999999999998775 55666677778888888877765