Psyllid ID: psy7537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MDGMDTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKETSGTTIHHGIRYRVQFNENNS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHcHHHHccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEccccc
Coil and Loop (DISEMBL)
MDGMDTAQVLDKLKHEeakfnvdsdkiDSLIKKSEEILESkkiespsaaiesetetnkqvdNQAETKKQLESEIETKKQLESEAETKKQvdsqgetkKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKEldyketsgttihhgIRYRVQFNENNS
Flexible Loop (DISEMBL)
MDGMDTAQVLDKlkheeakfnvdsdkidsLIKKSEeileskkiespsaaiesetetnkqvdnqaetkKQLESEIEtkkqleseaetkkqvdsqgetkkqvdsqaeskkqvdaetkkqvdsqaetkkqldsqaetkkQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKetsgttihhgiryrvqfnenns
Low Complexity Region (SEG)
MDGMDTAQVLDKLKHEEAKFNVDSDKIDslikkseeileskkiesPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKETSGTTIHHGIRYRVQFNENNS
Disordered region (IsUnstruct)
**************************************************************************************************************************************************************************************************FMKELDYKETSGTTIHHGIRYRVQ******
Disordered Region (DISOPRED)
********************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
********VLDKLKHEEAKFNVDSDKIDSLIKKSEEILES*************************************************************************************************************************************************KHLAQRYDDFMKELDYKETSGTTIHHGIRYRVQFNENNS
Disordered Region (DISPRO)
*********LDKLKHEEAKFNV**********K*************************************************************************************************************************************************************RYDDFMKELD**************YRVQ******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGMDTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESKKIESPSAAIESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKETSGTTIHHGIRYRVQFNENNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P18583	2426	Protein SON OS=Homo sapie	yes	N/A	0.705	0.065	0.251	0.0001
Q62170	397	P-selectin glycoprotein l	yes	N/A	0.491	0.277	0.292	0.0003
Q9QX47	2444	Protein SON OS=Mus muscul	no	N/A	0.723	0.066	0.239	0.0004

>sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 67/163 (41%), Gaps = 5/163 (3%)

Query: 27  IDSLIKKSEEILESKKIES---PSAAIESETETNKQVDNQAETKKQLESEIETKKQLESE 83
           +D L+     IL S  +E+    S  ++S+   +  +D+Q      ++S++     ++S+
Sbjct: 705 VDPLMAPESHILASNTMETHILASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQ 764

Query: 84  AETKKQVDSQGETKKQVDSQAESKKQVDAE--TKKQVDSQAETKKQLDSQAETKKQFDSQ 141
                 +DSQ      +DSQ  +   +D++      +DSQ      +DSQ       DSQ
Sbjct: 765 MLATSSMDSQMLATSSMDSQMLATSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQ 824

Query: 142 AETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEA 184
                  DSQ       DSQ      +DSQ       DSQ  A
Sbjct: 825 MLATSSMDSQMLATSTMDSQMLATSTMDSQMLATSSMDSQMLA 867

RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that posses weak splice sites. Specifically promotes splicing of many cell-cycle and DNA-repair transcripts that posses weak splice sites, such as TUBG1, KATNB1, TUBGCP2, AURKB, PCNT, AKT1, RAD23A, and FANCG. Probably acts by facilitating the interaction between Serine/arginine-rich proteins such as SRSF2 and the RNA polymerase II. Also binds to DNA; binds to the consensus DNA sequence: 5'-GA[GT]AN[CG][AG]CC-3'. May indirectly repress hepatitis B virus (HBV) core promoter activity and transcription of HBV genes and production of HBV virions.
Homo sapiens (taxid: 9606)

>sp|Q62170|SELPL_MOUSE P-selectin glycoprotein ligand 1 OS=Mus musculus GN=Selplg PE=1 SV=2

 Score = 45.4 bits (106), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)

Query: 72  SEIETKKQLESEAETKKQVDSQGETKKQVDSQAES--KKQVDAETKKQVDSQAETKKQLD 129
           + +ET +   +E ET +    + ET +    +AE+     ++AET +    +A+T +   
Sbjct: 130 TSVETVQPASTEVETSQPAPMEAETSQPAPMEAETSQPAPMEAETSQPAPMEADTSQPAP 189

Query: 130 SQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQA 182
            +AET +   ++AET K   ++AET K   ++AET  QL     +K  F + A
Sbjct: 190 MEAETSQPAPNEAETSKPAPTEAETSKPAPTEAET-TQLPRIQAVKTLFTTSA 241

A SLe(x)-type glycan, which through high affinity, calcium-dependent interactions with E- and P-selectins, mediates rapid rolling of leukocytes over vascular surfaces during the initial steps in inflammation. PSGL1 is critical for the initial leukocyte capture.

Mus musculus (taxid: 10090)

>sp|Q9QX47|SON_MOUSE Protein SON OS=Mus musculus GN=Son PE=1 SV=2

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 5/167 (2%)

Query: 27  IDSLIKKSEEILESKKIES---PSAAIESETETNKQVDNQAETKKQLESEIETKKQLESE 83
           +D L+ +   +L S  +E+    S  ++S+   +  +D+Q      ++S++     ++S+
Sbjct: 700 VDPLMAQESHMLASNTMETHMLASNTMDSQMLASNTMDSQMLASNTMDSQMLASSTMDSQ 759

Query: 84  AETKKQVDSQGETKKQVDSQAESKKQVDAE--TKKQVDSQAETKKQLDSQAETKKQFDSQ 141
                 +DSQ      +DSQ  +   +D++      +DSQ      +DSQ       DSQ
Sbjct: 760 MLASSTMDSQMLATSTMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQ 819

Query: 142 AETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHL 188
                  DSQ       DSQ      +DSQ       DSQ  A   +
Sbjct: 820 MLATSSMDSQMLATSSMDSQMLATSSMDSQMLATSSMDSQMLASGAM 866

RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that posses weak splice sites. Specifically promotes splicing of many cell-cycle and DNA-repair transcripts that posses weak splice sites, such as TUBG1, KATNB1, TUBGCP2, AURKB, PCNT, AKT1, RAD23A, and FANCG. Probably acts by facilitating the interaction between Serine/arginine-rich proteins such as SRSF2 and the RNA polymerase II. Also binds to DNA; binds to the consensus DNA sequence: 5'-GA[GT]AN[CG][AG]CC-3' (By similarity). May also regulate the ghrelin signaling in hypothalamic neuron by acting as a negative regulator of GHSR expression.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
219525741	647	p200, partial [Babesia bovis]	0.611	0.211	0.410	5e-19
219525737	720	p200, partial [Babesia bovis]	0.611	0.190	0.410	8e-19
219525739	555	p200, partial [Babesia bovis]	0.611	0.246	0.410	2e-18
83616161	718	anonymous antigen-2 [Babesia bovis]	0.607	0.189	0.413	7e-16
219525743	611	p200, partial [Babesia bovis]	0.593	0.217	0.410	4e-14
330791811	349	hypothetical protein DICPUDRAFT_26797 [D	0.584	0.375	0.315	8e-14
156082880	1023	200 kDa antigen p200 [Babesia bovis T2Bo	0.642	0.140	0.385	1e-13
343476750	640	unnamed protein product, partial [Trypan	0.647	0.226	0.357	1e-11
343476749	643	unnamed protein product [Trypanosoma con	0.647	0.225	0.357	4e-11
343476060	564	unnamed protein product [Trypanosoma con	0.638	0.253	0.365	8e-11

>gi|219525741|gb|ACL15289.1| p200, partial [Babesia bovis]

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 104/139 (74%), Gaps = 2/139 (1%)

Query: 51  ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ- 109
           E+E E  +Q + +AE K+Q E+E E K+Q E+EAE K+Q +++ E K+Q +++AE K+Q 
Sbjct: 260 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 319

Query: 110 -VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL 168
             +AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q 
Sbjct: 320 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 379

Query: 169 DSQAEMKKQFDSQAEAKKH 187
           +++AE K+Q +++AE K+ 
Sbjct: 380 EAEAERKRQEEAEAEGKRQ 398

Source: Babesia bovis

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|219525737|gb|ACL15287.1| p200, partial [Babesia bovis]

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 104/139 (74%), Gaps = 2/139 (1%)

Query: 51  ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ- 109
           E+E E  +Q + +AE K+Q E+E E K+Q E+EAE K+Q +++ E K+Q +++AE K+Q 
Sbjct: 208 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 267

Query: 110 -VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL 168
             +AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q 
Sbjct: 268 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 327

Query: 169 DSQAEMKKQFDSQAEAKKH 187
           +++AE K+Q +++AE K+ 
Sbjct: 328 EAEAERKRQEEAEAERKRQ 346

Source: Babesia bovis

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|219525739|gb|ACL15288.1| p200, partial [Babesia bovis]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 104/139 (74%), Gaps = 2/139 (1%)

Query: 51  ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ- 109
           E+E E  +Q + +AE K+Q E+E E K+Q E+EAE K+Q +++ E K+Q +++AE K+Q 
Sbjct: 63  EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 122

Query: 110 -VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL 168
             +AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q 
Sbjct: 123 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 182

Query: 169 DSQAEMKKQFDSQAEAKKH 187
           +++AE K+Q +++AE K+ 
Sbjct: 183 EAEAERKRQEEAEAERKRQ 201

Source: Babesia bovis

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|83616161|gb|ABC25605.1| anonymous antigen-2 [Babesia bovis]

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/138 (41%), Positives = 104/138 (75%), Gaps = 2/138 (1%)

Query: 51  ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ- 109
           E+E E  +Q + +AE K+Q E+E E K+Q E+EAE K+Q +++ E K+Q +++AE K+Q 
Sbjct: 249 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 308

Query: 110 -VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL 168
             +AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q 
Sbjct: 309 EAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 368

Query: 169 DSQAEMKKQFDSQAEAKK 186
           +++AE K+Q +++AE K+
Sbjct: 369 EAEAERKRQEEAEAERKR 386

Source: Babesia bovis

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|219525743|gb|ACL15290.1| p200, partial [Babesia bovis]

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 104/139 (74%), Gaps = 6/139 (4%)

Query: 51  ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ- 109
           E+E E  +Q + +AE K+Q E+E E K+Q E+EAE K+Q +++ E K+Q +++AE K+Q 
Sbjct: 223 EAEAERKRQ-EAEAERKRQ-EAEAERKRQ-EAEAERKRQ-EAEAERKRQEEAEAERKRQE 278

Query: 110 -VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL 168
             +AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q +++AE K+Q 
Sbjct: 279 EAEAERKRQEEAEAERKRQEEAEAEKKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQE 338

Query: 169 DSQAEMKKQFDSQAEAKKH 187
           +++AE K+Q +++AE K+ 
Sbjct: 339 EAEAERKRQEEAEAERKRQ 357

Source: Babesia bovis

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|330791811|ref|XP_003283985.1| hypothetical protein DICPUDRAFT_26797 [Dictyostelium purpureum] gi|325086143|gb|EGC39538.1| hypothetical protein DICPUDRAFT_26797 [Dictyostelium purpureum]

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 50/133 (37%), Gaps = 2/133 (1%)

Query: 50  IESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ 109
           I+S      Q D+      Q +S     +Q ES      Q DS     +Q DS     +Q
Sbjct: 217 IDSTCAPPDQFDSTCAPPDQFDSTCAPPQQFESICAPPHQFDSTCAPPQQFDSPCAPPQQ 276

Query: 110 VD--AETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQ 167
            D       Q DS     +Q DS      QFDS     +QFDS      QFDS      Q
Sbjct: 277 FDSICAPPHQFDSTCAPPQQFDSICAPPHQFDSICPPPQQFDSICAPPHQFDSTCTPPHQ 336

Query: 168 LDSQAEMKKQFDS 180
            DS      QFDS
Sbjct: 337 FDSTCAPPHQFDS 349

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|156082880|ref|XP_001608924.1| 200 kDa antigen p200 [Babesia bovis T2Bo] gi|154796174|gb|EDO05356.1| 200 kDa antigen p200 [Babesia bovis]

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 109/153 (71%), Gaps = 9/153 (5%)

Query: 32  KKSEEILESKK-----IESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAET 86
           +K +E LE+++     +E+     E+E E  +Q + +AE K+Q E+E E K+Q E+EAE 
Sbjct: 557 RKRQEALEAERKRQEALEAERKRQEAEAERKRQ-EAEAERKRQ-EAEAERKRQEEAEAER 614

Query: 87  KKQVDSQGETKKQVDSQAESKKQ--VDAETKKQVDSQAETKKQLDSQAETKKQFDSQAET 144
           K+Q +++ E K+Q +++AE K+Q   +AE K+Q +++AE K+Q +++AE K+Q +++AE 
Sbjct: 615 KRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAERKRQEEAEAER 674

Query: 145 KKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQ 177
           K+Q +++AE K+Q +++AE K+Q +++AE K+Q
Sbjct: 675 KRQEEAEAERKRQEEAEAERKRQEEAEAERKRQ 707

Source: Babesia bovis T2Bo

Species: Babesia bovis

Genus: Babesia

Family: Babesiidae

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|343476750|emb|CCD12243.1| unnamed protein product, partial [Trypanosoma congolense IL3000]

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 20/165 (12%)

Query: 39  ESKKIESPSAAIESETETNKQVDNQAETK-KQLESEIET-KKQLESEAETKKQVDSQ--- 93
           E K++   +AA++ + ++N Q  + A+ + K+L  EI   KKQL+S A+++   D++   
Sbjct: 266 EVKRLSDENAALKKQLDSNAQSRSSADAEVKRLSDEIAALKKQLDSNAQSRSSADAEVKR 325

Query: 94  -----GETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQ------- 141
                   KKQ+DS A+S+   DAE K+  D  A  KKQLDS A++K   D++       
Sbjct: 326 LSDEIAALKKQLDSNAQSRSSADAEVKRLSDENAALKKQLDSNAQSKGSADAEVKRLSDE 385

Query: 142 -AETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAK 185
            A  KKQ DS A+++   D  AE K+  D  A +KKQ DS A+++
Sbjct: 386 IAALKKQLDSNAQSRSSAD--AEVKRLSDENAALKKQLDSNAQSR 428

Source: Trypanosoma congolense IL3000

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|343476749|emb|CCD12242.1| unnamed protein product [Trypanosoma congolense IL3000]

 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 20/165 (12%)

Query: 39  ESKKIESPSAAIESETETNKQVDNQAETK-KQLESEIET-KKQLESEAETKKQVDSQ--- 93
           E K++   +AA++ + ++N Q  + A+ + K+L  EI   KKQL+S A+++   D++   
Sbjct: 80  EVKRLSDENAALKKQLDSNAQSRSSADAEVKRLSDEIAALKKQLDSNAQSRSSADAEVKR 139

Query: 94  -----GETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQF 148
                   KKQ+DS A+SK   +AE K+  D  A  KKQLDS A+++   D  AE K+  
Sbjct: 140 LSDEIAALKKQLDSNAQSKGSANAEVKRLSDENAALKKQLDSNAQSRSSAD--AEVKRLS 197

Query: 149 DSQAETKKQFDSQAETKKQLDSQ--------AEMKKQFDSQAEAK 185
           D  A  KKQ DS A+++   D++        A +KKQ DS A++K
Sbjct: 198 DEIAALKKQLDSNAQSRSSADAEVKRLSDEIAALKKQLDSNAQSK 242

Source: Trypanosoma congolense IL3000

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

>gi|343476060|emb|CCD12719.1| unnamed protein product [Trypanosoma congolense IL3000]

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 90/167 (53%), Gaps = 24/167 (14%)

Query: 39  ESKKIESPSAAIESETETNKQV------------DNQAETKKQLESEIETKKQLESEAET 86
           E K++   +AA++ + ++N Q             D  A  KKQL+S  ++K    ++AE 
Sbjct: 28  EVKRLSDENAALKRQLDSNAQSKGSANAEMKRLSDENAALKKQLDSNAQSKGS--ADAEV 85

Query: 87  KKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKK 146
           K+  D     KKQ++S A+SK   DAE K+  D  A  KKQLDS A++K    + AE K+
Sbjct: 86  KRLSDENAALKKQLESNAQSKGSADAEMKRLSDEIAALKKQLDSNAQSKGS--ANAEVKR 143

Query: 147 QFDSQAETKKQFDSQAETK-------KQL-DSQAEMKKQFDSQAEAK 185
             D  A  K+Q DS A++K       K+L D  A +KKQ DS A++K
Sbjct: 144 LSDENAALKRQLDSNAQSKGSANAEMKRLSDENAALKKQLDSNAQSK 190

Source: Trypanosoma congolense IL3000

Species: Trypanosoma congolense

Genus: Trypanosoma

Family: Trypanosomatidae

Order: Kinetoplastida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
UNIPROTKB|G4N0Y1	709	MGG_09571 "Uncharacterized pro	0.870	0.275	0.276	3.8e-12
TAIR|locus:2098443	2081	AT3G28770 "AT3G28770" [Arabido	0.758	0.081	0.303	9.1e-12
DICTYBASE|DDB_G0289719	1419	DDB_G0289719 "SFRS2-interactin	0.669	0.105	0.273	9.5e-12
UNIPROTKB|Q8IID4	5251	PF11_0240 "Dynein heavy chain-	0.848	0.036	0.248	1.2e-11
ZFIN|ZDB-GENE-091204-448	1823	si:ch73-138n13.1 "si:ch73-138n	0.660	0.081	0.231	1.6e-11
TAIR|locus:504955937	734	AT2G22795 "AT2G22795" [Arabido	0.580	0.177	0.299	1.8e-11
WB|WBGene00018119	335	F36H12.3 [Caenorhabditis elega	0.683	0.456	0.283	2.2e-11
FB|FBgn0029807	1132	CG3108 [Drosophila melanogaste	0.736	0.145	0.267	2.5e-11
FB|FBgn0031842	1430	Tango1 "Transport and Golgi or	0.540	0.084	0.288	2.6e-11
DICTYBASE|DDB_G0286543	1361	DDB_G0286543 "RUN domain-conta	0.651	0.107	0.263	5e-11

UNIPROTKB|G4N0Y1 MGG_09571 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 174 (66.3 bits), Expect = 3.8e-12, P = 3.8e-12
 Identities = 58/210 (27%), Positives = 97/210 (46%)

Query:     6 TAQVLDKLKHEEAKFNVDSDKIDXXXXXXXXXXXXXXXXXPSAAIESETETNKQVDNQAE 65
             TA   +K  H E K  ++++KI                   ++A+E  T+ +   D Q  
Sbjct:   437 TALEAEKKAHAETKTALETEKIAAAEAKKSLDSEKASKADANSALE--TQKSAVADAQKA 494

Query:    66 TKKQLESEIETKKQLESE----AETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQ 121
              + + ++  ETK  LE+E    A+ KK V+S+  T ++     E++K   AETKK   S+
Sbjct:   495 VEAEKKAHAETKSALEAEKTAAADAKKAVESEKSTAQEAQKALEAEKAAHAETKKS--SE 552

Query:   122 AETKKQLDSQAETKKQFDSQAETKKQFDSQ----AETKKQFDSQAETKKQLDSQAEMKKQ 177
             A T    ++Q   + +  + AE KK  ++     A+ KK  D  AE     D+Q  ++ +
Sbjct:   553 AGTSAVTEAQKALESEKAAHAEAKKASEADKAALADAKKALD--AEKAAAADAQKALEAE 610

Query:   178 FDSQAEAKKHLAQRYDDFMKELDYKETSGT 207
               + A+AKK L        K L+  ET+ T
Sbjct:   611 KAAAADAKKALEAEKASAKKALE-TETAAT 639

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2098443 AT3G28770 "AT3G28770" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 9.1e-12, P = 9.1e-12
 Identities = 55/181 (30%), Positives = 94/181 (51%)

Query:    50 IESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQ 109
             ++++++   Q +N+ + KKQ  S  E KKQ E++ E  K  D +  T +Q   + ES + 
Sbjct:  1418 MQADSQATTQRNNEEDRKKQT-SVAENKKQKETKEEKNKPKDDKKNTTEQSGGKKESMES 1476

Query:   110 VDAETKKQVDSQAETKKQLD-SQAETKKQFDSQAET--KKQFDSQA---ETKKQFDSQAE 163
                E + Q  SQA T+ + D S+ E   Q DSQA+T    Q DS     E   Q DSQA+
Sbjct:  1477 ESKEAENQQKSQATTQGESDESKNEILMQADSQADTHANSQGDSDESKNEILMQADSQAD 1536

Query:   164 TKKQLD-SQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKETSGTTIHHGIRYRVQFNEN 222
             ++   D S+ E+  Q DSQA+++    +  ++ + + D +   G ++      +V+  E+
Sbjct:  1537 SQTDSDESKNEILMQADSQADSQTDSDESKNEILMQADSQAKIGESLEDN---KVKGKED 1593

Query:   223 N 223
             N
Sbjct:  1594 N 1594

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

DICTYBASE|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 174 (66.3 bits), Expect = 9.5e-12, P = 9.5e-12
 Identities = 44/161 (27%), Positives = 88/161 (54%)

Query:    49 AIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKK 108
             A+ESE E+  + D ++E +++ E E   K   +S ++  KQ       KK+++S++ESK 
Sbjct:   506 AVESEPESESESDEESEEEEESEEEETNKVVTKSTSKPLKQ-----SKKKEIESESESKS 560

Query:   109 QVDAETKKQVDSQAETKKQLDSQAE---TKKQFDSQAETKKQF-DSQAETKKQFDSQAET 164
             + + E +++   +   KK    Q++   TK +F+S+ E++++  DS+   KK    Q++ 
Sbjct:   561 EEEEEEEEEEKEEESKKKSSSKQSKKKVTKSKFESEHESEEESKDSKKNVKKSASKQSKK 620

Query:   165 KKQLDSQAEMKKQFDSQA--EAKKHLAQRYDDFMKELDYKE 203
             K   +S  E+K + D +   E  K + +  ++ +KE + KE
Sbjct:   621 KVTQESDEELKSESDEEIKKEKSKKVKKEKENKLKEKEKKE 661

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8IID4 PF11_0240 "Dynein heavy chain-like protein PF11_0240" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 177 (67.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 49/197 (24%), Positives = 88/197 (44%)

Query:    10 LDKLKHEEAKFNVDSDKIDXXXXXXXXXXXXXXX--XXPSAAIESETETNKQVDNQAETK 67
             +D+ K EE K  VD +K++                      AIE  TE  K V+   E +
Sbjct:  4071 VDEEKMEEEK--VDEEKMEDEKVEEKMEEEKVVEENTEDEKAIEINTEDEKAVEKNTEDE 4128

Query:    68 KQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETK--KQVDSQAETK 125
             K +E   E +K +E   E +K V+   E +K V+   E +K ++  T+  K V+   E +
Sbjct:  4129 KAVEKNTEDEKAIEKNTEDEKAVEKNTEDEKAVEKNTEDEKAIEKNTEDEKAVEKNTEDE 4188

Query:   126 KQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAK 185
             K ++   E +K  +   E +K  +   E +K  +   E +K ++ + E +K  + +AE +
Sbjct:  4189 KAVEQNTEDEKVVEENTEDEKAVEKNTEDEKAVEKNTEDEKVVEEKIEDEKGEEQKAEEE 4248

Query:   186 KHLAQRYDDFMKELDYK 202
                 +  +    + DYK
Sbjct:  4249 NVGIEEVEKVQID-DYK 4264

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

ZFIN|ZDB-GENE-091204-448 si:ch73-138n13.1 "si:ch73-138n13.1" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 35/151 (23%), Positives = 87/151 (57%)

Query:    51 ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQV 110
             E E E  +Q++ Q E ++Q   +IE ++   +E E ++Q + + + +K+ + + E   + 
Sbjct:   902 EQERERQRQIERQREIERQKLKQIEYERMKAAERELEQQREFERQRQKEFEREKERMLEQ 961

Query:   111 DAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDS 170
             +    ++ + Q E +K+ + Q E ++Q + + + +++ + Q E ++Q   + E +++L  
Sbjct:   962 ERLRLREFEKQKEIEKERERQLELERQREIERQKQRELEKQREIERQ--KEIERQRELQR 1019

Query:   171 QAEMKKQFDSQAEAKKHLAQRYD-DFMKELD 200
             Q E++KQ + + E ++HL ++ + D  +EL+
Sbjct:  1020 QRELEKQKEQEREKQRHLERQKELDRQRELE 1050

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 41/137 (29%), Positives = 86/137 (62%)

Query:    51 ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQV 110
             ESET+  ++  +Q E+K   + E ETK++ ES ++ ++ +D + E K++V+S ++ K + 
Sbjct:   432 ESETKDKEESSSQEESK---DRETETKEKEESSSQ-EETMDKETEAKEKVESSSQEKNE- 486

Query:   111 DAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDS 170
             D ET+K   S  E  K+ + + + K++  SQ +T+++ +++ +  ++  SQ ETK + + 
Sbjct:   487 DKETEKIESSFLEETKEKEDETKEKEESSSQEKTEEK-ETETKDNEESSSQEETKDKENE 545

Query:   171 QAEMKKQFDSQAEAKKH 187
             + E K++  SQ E+K++
Sbjct:   546 KIE-KEEASSQEESKEN 561

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

WB|WBGene00018119 F36H12.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 161 (61.7 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 45/159 (28%), Positives = 83/159 (52%)

Query:    46 PSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAE 105
             P A  + +    K+   ++E K++ + E E KK+   ++E KK  D + E K++   + E
Sbjct:    41 PKADSKMKAPEEKEKSKKSEKKEEPKKE-EEKKEKSKKSEGKKS-DKKEEKKEEKKEEKE 98

Query:   106 SKKQVDAETKKQVDSQAETK-KQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAET 164
              KK+   E KK+ D + E K ++ D + E KK  D + + K++ D + E KK  D +++ 
Sbjct:    99 DKKEEKKEEKKEDDKKDEKKDEKKDEKEEDKKSEDKKEDEKEKDDDKKEDKKD-DKKSDN 157

Query:   165 KKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKELDYKE 203
             K   D + + +K+ D + E K+   +   +  KE + KE
Sbjct:   158 KDDKDDEKKEEKK-DDKEEKKEEKKEEKKEEKKE-EKKE 194

GO:0005198 "structural molecule activity" evidence=IEA

FB|FBgn0029807 CG3108 [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 47/176 (26%), Positives = 99/176 (56%)

Query:    47 SAAIESETETNKQVDNQAETKKQLESEIETKKQLESE-----AETKKQVDSQGETKKQVD 101
             SA  E E E+   +D+Q   + +++ E     + +SE     AETK ++++Q E + Q +
Sbjct:   209 SAVEELEKESEAAMDDQVPEESEIQPEQVQPGEYQSESDGEQAETKPEIEAQPEVEAQPE 268

Query:   102 SQA--ESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFD 159
             ++A  E++ Q++ E + +V+SQ E + Q + +A+ + +  S+ E++ + +S +E + Q +
Sbjct:   269 AEAQPEAEPQLEVEPQPEVESQPEVESQPEVEAQPEVEPQSEVESQPEAESHSEPETQAE 328

Query:   160 SQAETKKQLDSQAEMKKQFDSQAEAKKHL-AQRYDDFMKELDYKETS-GTTIHHGI 213
              +A+ + +   +AE + + +SQ E +  + A++  D   E+D  E S   T+  GI
Sbjct:   329 VEAQPEVESLPEAESQPEAESQPEREPEVEAEKISD--NEVDTTEASLMETLVEGI 382

GO:0004181 "metallocarboxypeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0031842 Tango1 "Transport and Golgi organization 1" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 36/125 (28%), Positives = 74/125 (59%)

Query:    58 KQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQV--DAETK 115
             K  +N     KQL+ E E K++L +EAE +K++  + + +K++  +A   K++  +AE +
Sbjct:   485 KNFENPNNYYKQLQEEQE-KQRLVAEAEEQKRLQEEADQQKRLQEEAALNKRLLEEAEQQ 543

Query:   116 KQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDSQAEMK 175
             K++  +AE +K+L  +AE  K+   +AE +K+   ++E  ++   +AE +  +  +A M+
Sbjct:   544 KRLQEEAEQQKRLQEEAELNKRLLEEAEKQKRLHEESEQLQRSSEEAEPQLSVQ-EANMQ 602

Query:   176 KQFDS 180
             +  DS
Sbjct:   603 QLNDS 607

GO:0003674 "molecular_function" evidence=ND

GO:0007030 "Golgi organization" evidence=IMP

GO:0009306 "protein secretion" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0070971 "endoplasmic reticulum exit site" evidence=IDA

DICTYBASE|DDB_G0286543 DDB_G0286543 "RUN domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 39/148 (26%), Positives = 80/148 (54%)

Query:    51 ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQV 110
             E E E  + ++ Q E +KQ E E E  KQ E E + +K+   + + +K  + + E +K+ 
Sbjct:   241 EKEKEQQEIIEKQKEIEKQKEIEKEKVKQKEQEKKNEKERQEKEKLEKIKEKEREREKER 300

Query:   111 DAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQLDS 170
             D E + + + +   +K+ +   E +K+   Q E +KQ +++ + +++   + E +K+ + 
Sbjct:   301 DKERELEKERERLKEKEREKLKEKEKEKQKQKENEKQKENEKQKEQEKQKEIEKQKEQEK 360

Query:   171 QAEMKKQFDS--QAEAKKHLAQRYDDFM 196
             Q E++KQ ++  Q E +K   Q  +D M
Sbjct:   361 QKELEKQKENEKQKEIEKQKEQENEDSM 388

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-04

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 26/145 (17%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 44  ESPSAAIESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQ 103
           E      E  TE   +   ++  + + E E ETK + ESE E     + +GE + + + +
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI--PAERKGEQEGEGEIE 700

Query: 104 AESKKQVDAETKKQVDSQAETKKQ-LDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQA 162
           A+          ++V+ + ET+ +  + + E +   + + E + + + +AE K + +++ 
Sbjct: 701 AKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE-EVEDEGEGEAEGKHEVETEG 759

Query: 163 ETKKQLDSQAEMKKQFDSQAEAKKH 187
           + K+         +  + + E +  
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQ 784

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.97
KOG0977|consensus	546		92.55
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	89.33
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	87.96
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	86.35
PRK09039	343	hypothetical protein; Validated	82.41
KOG0977|consensus	546		81.12
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	80.32

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.97  E-value=0.48  Score=39.30  Aligned_cols=83  Identities=17%  Similarity=0.375  Sum_probs=49.9

Q ss_pred             hcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccH-HHHhhhhchHHHHHHhhchHHHHHHHHHHhHHHH
Q psy7537         117 QVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQ-AETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDF  195 (224)
Q Consensus       117 lsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSn-Ae~KrlsDe~AalKKQlDSnAqsKkhlaqryddf  195 (224)
                      .-.++..+.++||....-+....  .++..+-.++..++.++..- +..+.+-.++..|++.+|.-.-+...|-.+...+
T Consensus        52 ye~el~~lr~~id~~~~eka~l~--~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L  129 (312)
T PF00038_consen   52 YEEELRELRRQIDDLSKEKARLE--LEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSL  129 (312)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHhHHhhhhHHHHhhHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHH
Confidence            34555666666666666555554  66666666666666666544 4444555566666777766666666666555555


Q ss_pred             Hhhhcc
Q psy7537         196 MKELDY  201 (224)
Q Consensus       196 mkeldy  201 (224)
                      ..+|+|
T Consensus       130 ~eEl~f  135 (312)
T PF00038_consen  130 KEELEF  135 (312)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0977|consensus

Probab=92.55  E-value=0.48  Score=45.88  Aligned_cols=144  Identities=19%  Similarity=0.301  Sum_probs=96.0

Q ss_pred             hhHHHHHHHhhHHHHhhhhhchHHHH-------------------hh-hhcchhhhhhhcchhhhhhhhchhhhhhhcch
Q psy7537          61 DNQAETKKQLESEIETKKQLESEAET-------------------KK-QVDSQGETKKQVDSQAESKKQVDAETKKQVDS  120 (224)
Q Consensus        61 d~~a~~kkQL~s~ies~~ql~adAe~-------------------K~-l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe  120 (224)
                      .++..|--+|..-|+--.+|+++--+                   |- ...+-+.+.+-++..+-.+..+..|+++|.++
T Consensus        42 ~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e  121 (546)
T KOG0977|consen   42 KELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREE  121 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            35566667777777766655543211                   00 01122345667888888999999999999999


Q ss_pred             HHHHHHhhhhhhhhhhccCcH--HHHhhhhchHHHHH------HhhccH-----HHHhhhhchHHHHHHhhchHHHHHHH
Q psy7537         121 QAETKKQLDSQAETKKQFDSQ--AETKKQFDSQAETK------KQFDSQ-----AETKKQLDSQAEMKKQFDSQAEAKKH  187 (224)
Q Consensus       121 ~AalKkQLDSnAqsk~sadsq--AE~KrlsDe~AalK------kQlDSn-----Ae~KrlsDe~AalKKQlDSnAqsKkh  187 (224)
                      +..+++.++......-.+-..  -.+.++++-.|++.      +.|...     +|.-|+-++++.+++|+|----.+-.
T Consensus       122 ~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d  201 (546)
T KOG0977|consen  122 LKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVD  201 (546)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999998876555444321  12444444444321      111111     56667888899999999988888888


Q ss_pred             HHHhHHHHHhhhccccc
Q psy7537         188 LAQRYDDFMKELDYKET  204 (224)
Q Consensus       188 laqryddfmkeldyket  204 (224)
                      +--+-.+.+.+|+|...
T Consensus       202 ~~n~~q~Lleel~f~~~  218 (546)
T KOG0977|consen  202 LQNRVQTLLEELAFLKR  218 (546)
T ss_pred             HHhHHHHHHHHHHHHHh
Confidence            88888899999988764

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=89.33  E-value=0.11  Score=50.97  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=0.0

Q ss_pred             HhhhhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccC
Q psy7537          86 TKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFD  139 (224)
Q Consensus        86 ~K~l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sad  139 (224)
                      .|+..+...+|..|++.---.+..++.+-..+-.++..|..+||+-...|..+.
T Consensus       126 rkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~E  179 (859)
T PF01576_consen  126 RKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAE  179 (859)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444443333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=87.96  E-value=0.15  Score=49.97  Aligned_cols=135  Identities=20%  Similarity=0.299  Sum_probs=0.0

Q ss_pred             hHhhhhHHHHHHHhhHHHHhhhhhchHHHHhhhhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhh
Q psy7537          57 NKQVDNQAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKK  136 (224)
Q Consensus        57 ~KQ~d~~a~~kkQL~s~ies~~ql~adAe~K~l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~  136 (224)
                      .|..+.++++..|++..-..+.  ..+-+...+-.+...|..++++-..++..++.-.|.+-..+++++..++..-....
T Consensus       127 kkh~~~~~eL~eqle~lqk~k~--~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~  204 (859)
T PF01576_consen  127 KKHQDAVAELNEQLEQLQKQKA--KLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRN  204 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888888888777777  55566777778888999999999999999999999999999999999998887777


Q ss_pred             ccCcHHHHhhhhchHHHHHHhhccH--------HHHhhhhchHHHHHHhhchHHHHHHHHHHhHHHH
Q psy7537         137 QFDSQAETKKQFDSQAETKKQFDSQ--------AETKKQLDSQAEMKKQFDSQAEAKKHLAQRYDDF  195 (224)
Q Consensus       137 sadsqAE~KrlsDe~AalKkQlDSn--------Ae~KrlsDe~AalKKQlDSnAqsKkhlaqryddf  195 (224)
                      .+.  ....|+..++..|.++|..-        ..-..+...+..++.+|+....+|..|.......
T Consensus       205 el~--~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~l  269 (859)
T PF01576_consen  205 ELT--EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQL  269 (859)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHH
Confidence            766  77889999999999998754        1222344556678888888887777766554433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=86.35  E-value=1.5  Score=34.98  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=19.4

Q ss_pred             HHHhhhhchHHHHHHhhccHHHHhhhhchHHHHHHhhch
Q psy7537         142 AETKKQFDSQAETKKQFDSQAETKKQLDSQAEMKKQFDS  180 (224)
Q Consensus       142 AE~KrlsDe~AalKkQlDSnAe~KrlsDe~AalKKQlDS  180 (224)
                      .+.++...|++.+|+++..      ...+..+||||.+.
T Consensus       154 ~~~~~~~~ei~~lk~el~~------~~~~~~~LkkQ~~~  186 (192)
T PF05529_consen  154 EENKKLSEEIEKLKKELEK------KEKEIEALKKQSEG  186 (192)
T ss_pred             hhhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence            4555666666666666654      33455666666543

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK09039 hypothetical protein; Validated

Probab=82.41  E-value=36  Score=30.37  Aligned_cols=77  Identities=14%  Similarity=0.239  Sum_probs=40.0

Q ss_pred             CcHHHHhhhhchHHHHHHhhccH--------HHHhhhhchHHHHHHhhchHHHH-HHHHHHhHHHHHhhh-cccc-cCcc
Q psy7537         139 DSQAETKKQFDSQAETKKQFDSQ--------AETKKQLDSQAEMKKQFDSQAEA-KKHLAQRYDDFMKEL-DYKE-TSGT  207 (224)
Q Consensus       139 dsqAE~KrlsDe~AalKkQlDSn--------Ae~KrlsDe~AalKKQlDSnAqs-Kkhlaqryddfmkel-dyke-tsgt  207 (224)
                      +.+.++.+|..+|++|++|+.+-        ++.+.+-..++.|+..|..--.. -+.|++--.+|+..| +.-. ..|-
T Consensus       134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~i  213 (343)
T PRK09039        134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGI  213 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCc
Confidence            34477888888888888886543        12222223334444444433222 233444346787666 2433 3466


Q ss_pred             ceecceeee
Q psy7537         208 TIHHGIRYR  216 (224)
Q Consensus       208 tihhgiryr  216 (224)
                      .|. |-|+.
T Consensus       214 ri~-g~~~~  221 (343)
T PRK09039        214 RIV-GDRFV  221 (343)
T ss_pred             EEE-CCEEE
Confidence            666 55554

>KOG0977|consensus

Probab=81.12  E-value=14  Score=36.03  Aligned_cols=94  Identities=19%  Similarity=0.328  Sum_probs=49.9

Q ss_pred             HHHHHHHhhHHHHhhhhhchHHHHhhhhcchhhhhhhcchhhhhhh----hchhhhhhhcchHHHHH---Hhhhhhhhhh
Q psy7537          63 QAETKKQLESEIETKKQLESEAETKKQVDSQGETKKQVDSQAESKK----QVDAETKKQVDSQAETK---KQLDSQAETK  135 (224)
Q Consensus        63 ~a~~kkQL~s~ies~~ql~adAe~K~l~d~ngalkKQ~dS~aqSk~----saDAE~KrlsDe~AalK---kQLDSnAqsk  135 (224)
                      +++..+-|++..-.+.  ..+.++++|.++...+++.+......+-    .++-...++++-+|++.   .-...--...
T Consensus        94 l~~ar~~l~e~~~~ra--~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~  171 (546)
T KOG0977|consen   94 LATARKLLDETARERA--KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL  171 (546)
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            3445555555555555  5567778888888888777776654443    33434445555554432   1111111111


Q ss_pred             hccCcHHHHhhhhchHHHHHHhhcc
Q psy7537         136 KQFDSQAETKKQFDSQAETKKQFDS  160 (224)
Q Consensus       136 ~sadsqAE~KrlsDe~AalKkQlDS  160 (224)
                      +-.-  +|.-|+.++++.+++|+|-
T Consensus       172 ~~Lk--~en~rl~~~l~~~r~~ld~  194 (546)
T KOG0977|consen  172 KRLK--AENSRLREELARARKQLDD  194 (546)
T ss_pred             HHHH--HHhhhhHHHHHHHHHHHHH
Confidence            1111  4555666777777776653

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=80.32  E-value=40  Score=31.63  Aligned_cols=17  Identities=18%  Similarity=0.235  Sum_probs=7.0

Q ss_pred             HHhhhhchHHHHHHhhc
Q psy7537         143 ETKKQFDSQAETKKQFD  159 (224)
Q Consensus       143 E~KrlsDe~AalKkQlD  159 (224)
                      ++..+-.++..+..+++
T Consensus       434 ~~~~~~~~~~~~~~~~~  450 (1179)
T TIGR02168       434 ELKELQAELEELEEELE  450 (1179)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 40/275 (14%), Positives = 83/275 (30%), Gaps = 87/275 (31%)

Query: 2   DGMDTAQVLDKLKHEEAKFNVDSDKIDSLIKKSEEILESK----------------KIES 45
           DG+ T    D  KH      V+ DK+ ++I+ S  +LE                   I  
Sbjct: 339 DGLAT---WDNWKH------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-- 387

Query: 46  PSAAI-----ESETETNKQVDNQAETKKQLESEIETKKQLESEAETKKQV-DSQGETKKQ 99
           P+  +     +        V N+      +E      KQ +   E+   +     E K +
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE------KQPK---ESTISIPSIYLELKVK 438

Query: 100 VDSQAES-KKQVDA-ETKKQVDSQAETKKQLD-----------SQAETKKQFDSQAETKK 146
           ++++    +  VD     K  DS       LD              E         E   
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-------HPERMT 491

Query: 147 QFDS--------QAETKKQFDSQAETKKQLDSQAEMKKQFDSQAEAKKHLAQ---RYDDF 195
            F          + + +    +   +   L++  ++K         K ++     +Y+  
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY-------KPYICDNDPKYERL 544

Query: 196 MKEL-DYKETSGTTIHHGIRYR--VQF---NENNS 224
           +  + D+       +    +Y   ++     E+ +
Sbjct: 545 VNAILDFLPKIEENLICS-KYTDLLRIALMAEDEA 578

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.0
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.06
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	87.81
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	85.69

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.00  E-value=1.7  Score=35.02  Aligned_cols=36  Identities=11%  Similarity=0.044  Sum_probs=14.3

Q ss_pred             HHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhh
Q psy7537         121 QAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQF  158 (224)
Q Consensus       121 ~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQl  158 (224)
                      ..+|.+++++...-.....  .++..+...+.+++..+
T Consensus        92 ~~aL~kEie~~~~~i~~lE--~eile~~e~ie~~~~~l  127 (256)
T 3na7_A           92 LRSLNIEEDIAKERSNQAN--REIENLQNEIKRKSEKQ  127 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence            3344444443333333333  34444444444444433

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=87.81  E-value=1.8  Score=32.41  Aligned_cols=92  Identities=18%  Similarity=0.308  Sum_probs=60.0

Q ss_pred             hhcchhhhhhhcchhhhhhhhchhhhhhhcchHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHHhhhh
Q psy7537          89 QVDSQGETKKQVDSQAESKKQVDAETKKQVDSQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAETKKQL  168 (224)
Q Consensus        89 l~d~ngalkKQ~dS~aqSk~saDAE~KrlsDe~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~Krls  168 (224)
                      |...||++-|||.+-.++...+..+.+.|.++...++.+            ++..++.....+..++++|....      
T Consensus         6 LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~------------~~~k~~eq~~~le~lk~eL~~~~------   67 (107)
T 2no2_A            6 LLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQ------------GQRKTQEQLEVLESLKQELATSQ------   67 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH------
Confidence            556688999999999999999999999999998888722            22444555556666666655432      


Q ss_pred             chHHHHHHhhchHHHHHHHHHHhHHHHHhh
Q psy7537         169 DSQAEMKKQFDSQAEAKKHLAQRYDDFMKE  198 (224)
Q Consensus       169 De~AalKKQlDSnAqsKkhlaqryddfmke  198 (224)
                      +++..++..++.-.+++..|..+.+..-+|
T Consensus        68 ~el~~lq~~l~~~~~~~~~l~~~~~~l~~E   97 (107)
T 2no2_A           68 RELQVLQGSLETSAQSEANWAAEFAELEKE   97 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233335555555555555555555444443

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=85.69  E-value=2.6  Score=30.24  Aligned_cols=81  Identities=11%  Similarity=0.277  Sum_probs=57.6

Q ss_pred             hHHHHHHhhhhhhhhhhccCcHHHHhhhhchHHHHHHhhccHHHH-hhhhchHHHHHHhhchHHHHHHHHHHhHHHHHhh
Q psy7537         120 SQAETKKQLDSQAETKKQFDSQAETKKQFDSQAETKKQFDSQAET-KKQLDSQAEMKKQFDSQAEAKKHLAQRYDDFMKE  198 (224)
Q Consensus       120 e~AalKkQLDSnAqsk~sadsqAE~KrlsDe~AalKkQlDSnAe~-KrlsDe~AalKKQlDSnAqsKkhlaqryddfmke  198 (224)
                      |+..|++|++.-..-++...  .|+..+-+....+|..+..-... ...-.++..|||-+|.-.-+|-.|-.+.+....|
T Consensus         1 Ei~eLr~qi~~l~~e~~~l~--~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE   78 (86)
T 3swk_A            1 EMRELRRQVDQLTNDKARVE--VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE   78 (86)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788887777777666  66777777777777766543221 1122457789999999889999999888888888


Q ss_pred             hccc
Q psy7537         199 LDYK  202 (224)
Q Consensus       199 ldyk  202 (224)
                      |.|-
T Consensus        79 l~fL   82 (86)
T 3swk_A           79 IAFL   82 (86)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00