Psyllid ID: psy7540

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------58
GQTVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQGKRASHN
cccEEEEccccccEEEEEEEEEEcccEEEEEEEEccccEEEEEEEEEcccEEEEEccEEEEcccccccHHHHHHHHHHHHHHHHccccccccHHccccccEEEEEEEEEcEEEEcEEcccHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccccccEEEEcccccccEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccHHHHHHHHHHHHHHccccccccccHHHcccccccccEEEcccccccccccccccccccccccHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccccccEEEEcccccccEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccc
ccEEEEEEccccEEEEEEEEEEEcccEEEEEEEEcccccEEEEEEEEccEEEEEccccEEEccccccccHHHHHHHHHHHHHHccccccccEEEccccccEEEEEEEEEcEEEccEEcccHHHHHHHHHHHHHHHHcccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEcccccccEEHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHcccccccEEEHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHcccccEccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHcHHHHcccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEHHHHccccEEEEEcccccccEEHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHcccccccEEEHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccc
gqtvslklnhgsdfiLGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDiyygigcsstWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLygsgsidnltlstSDHMAQFYATAEWLvnhqdpktggwpnpvrRRITAgigdlkpgwysamgqgHAISVLSRAYYHSGGNVTYLNTALRALKVfklpiykggvqskfldkfpwyeeypttpavfILNGFIYSLFglydlvtlsprsKQKEALSLYDQGITSLKRMLNMydtgsgssydlrhislgiapkiarcdyhATHVNQLLLLATIEkdkiisdtgvpvttqwdpngyyyptqiAQFGLshysknltepepkrtvledgdsiqgdwvvpnsggyagrqyNQLVNSYVLNFhtsamgqgHAISVLSRAYYHSGGNVTYLNTALRALKVfklpiykggvqskfldkfpwyeeypttpavfILNGFIYSLFglydlvtlsprsKQKEALSLYDQGITSLKRMLNMydtgsgssydlrhislgiapkiarcdyhATHVNQLLLLATIEKDKIISDTGQRWAGYIQGKRASHN
gqtvslklnhgsdFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKgvllqekkrkiklvkskfkvTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQdpktggwpnpVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRtvledgdsiqgDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWagyiqgkrashn
GQTVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQGKRASHN
*******LNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSP*****EALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSK***************DSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSP*****EALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQ*******
**TVSL*LNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVL***********KSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQGK*****
GQTVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQGKRASHN
*QTVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQGK*****
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GQTVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGQRWAGYIQGKRASHN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query578 2.2.26 [Sep-21-2011]
Q9EPS3618 D-glucuronyl C5-epimerase yes N/A 0.551 0.516 0.501 3e-86
O94923617 D-glucuronyl C5-epimerase yes N/A 0.551 0.517 0.492 5e-85
O18756617 D-glucuronyl C5-epimerase yes N/A 0.555 0.520 0.495 5e-85
P46555616 D-glucuronyl C5-epimerase yes N/A 0.456 0.428 0.446 3e-58
Q58528308 Uncharacterized protein M yes N/A 0.261 0.490 0.323 2e-13
>sp|Q9EPS3|GLCE_MOUSE D-glucuronyl C5-epimerase OS=Mus musculus GN=Glce PE=1 SV=2 Back     alignment and function desciption
 Score =  319 bits (818), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/325 (50%), Positives = 224/325 (68%), Gaps = 6/325 (1%)

Query: 2   QTVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYY 61
           + VSL+L +  DFI+   L +L+N S+SV LE +E  +++ +HYV +  LI  R +DIYY
Sbjct: 281 EGVSLQLGNTKDFIISFDLKLLTNGSVSVVLETTEKNQLFTVHYVSNTQLIAFRDRDIYY 340

Query: 62  GIGCSSTWQTLTRDLLIDVQKGVLLQEKK--RKIKLVKSKFKVTHIHLYGSGSIDNLTLS 119
           GIG  ++W T+TRDL+ D++KGV L   K  +  K++  K  V  +   G G +DN+T+S
Sbjct: 341 GIGPRTSWSTVTRDLVTDLRKGVGLSNTKAVKPTKIMPKK--VVRLIAKGKGFLDNITIS 398

Query: 120 TSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSR 179
           T+ HMA F+A ++WLV +QD K GGWP  V R++  G   L+PGWYSAM QG AIS L R
Sbjct: 399 TTAHMAAFFAASDWLVRNQDEK-GGWPIMVTRKLGEGFKSLEPGWYSAMAQGQAISTLVR 457

Query: 180 AYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYS 239
           AY  +   V +L++ALRA   +K P  + GV++ F++K  WYEEYPTTP+ F+LNGF+YS
Sbjct: 458 AYLLTKDYV-FLSSALRATAPYKFPSEQHGVKAVFMNKHDWYEEYPTTPSSFVLNGFMYS 516

Query: 240 LFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIAR 299
           L GLYDL   +  +  KEA SLY++G+ SLK ML +YDTGSG+ YDLRH  LGIAP +AR
Sbjct: 517 LIGLYDLKETAGETLGKEARSLYERGMESLKAMLPLYDTGSGTIYDLRHFMLGIAPNLAR 576

Query: 300 CDYHATHVNQLLLLATIEKDKIISD 324
            DYH TH+NQL LL+TI++  I  +
Sbjct: 577 WDYHTTHINQLQLLSTIDESPIFKE 601
Converts D-glucuronic acid residues adjacent to N-sulfate sugar residues to L-iduronic acids.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: -
>sp|O94923|GLCE_HUMAN D-glucuronyl C5-epimerase OS=Homo sapiens GN=GLCE PE=1 SV=3 Back     alignment and function description
>sp|O18756|GLCE_BOVIN D-glucuronyl C5-epimerase OS=Bos taurus GN=GLCE PE=1 SV=2 Back     alignment and function description
>sp|P46555|GLCE_CAEEL D-glucuronyl C5-epimerase OS=Caenorhabditis elegans GN=hse-5 PE=1 SV=2 Back     alignment and function description
>sp|Q58528|Y1128_METJA Uncharacterized protein MJ1128 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1128 PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query578
91090674596 PREDICTED: similar to CG3194 CG3194-PA [ 0.560 0.543 0.556 1e-103
158294602572 AGAP005699-PA [Anopheles gambiae str. PE 0.557 0.562 0.559 1e-103
312379128571 hypothetical protein AND_09103 [Anophele 0.557 0.563 0.550 1e-101
322801307566 hypothetical protein SINV_12711 [Solenop 0.555 0.567 0.555 3e-99
332018392613 D-glucuronyl C5-epimerase [Acromyrmex ec 0.555 0.523 0.552 4e-99
307177516566 D-glucuronyl C5-epimerase [Camponotus fl 0.555 0.567 0.555 3e-98
380028864566 PREDICTED: D-glucuronyl C5-epimerase-lik 0.555 0.567 0.540 4e-98
328783223566 PREDICTED: d-glucuronyl C5-epimerase-lik 0.555 0.567 0.540 9e-98
157107931571 hypothetical protein AaeL_AAEL004916 [Ae 0.555 0.562 0.545 5e-97
170057349573 conserved hypothetical protein [Culex qu 0.557 0.561 0.537 5e-97
>gi|91090674|ref|XP_974487.1| PREDICTED: similar to CG3194 CG3194-PA [Tribolium castaneum] gi|270013933|gb|EFA10381.1| hypothetical protein TcasGA2_TC012612 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/325 (55%), Positives = 242/325 (74%), Gaps = 1/325 (0%)

Query: 3   TVSLKLNHGSDFILGVTLSILSNSSLSVALENSELQEMWRLHYVCSRDLITARGQDIYYG 62
            + LK+ H  DFI+ + + +  NSS S+ L+N E +E++ LHY+ S  LIT +  ++Y+G
Sbjct: 257 AIKLKMEHVLDFIMSLNIVLSGNSSFSIVLQNRETREIYNLHYITSDVLITVQDNNVYHG 316

Query: 63  IGCSSTWQTLTRDLLIDVQKGV-LLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTS 121
           +G +  W+ LTRDL++D+QKG+  L + K K K+ KSK K+  I L G G+IDNLTLS+S
Sbjct: 317 LGMNQEWKKLTRDLIVDLQKGLNYLDKDKSKRKIPKSKLKIITILLRGYGAIDNLTLSSS 376

Query: 122 DHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAY 181
           +H+ QFY  AEW V HQD +TGGWP PV+R++ +G  DL+ GWYSAMGQGHAISVLSRAY
Sbjct: 377 EHIQQFYDAAEWFVRHQDTETGGWPIPVKRKLASGFHDLQSGWYSAMGQGHAISVLSRAY 436

Query: 182 YHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLF 241
           +HSGG+V YL  AL  LK F++P  KGGV + FL+K+ WYEEYPT PA F+LNGFIYSL 
Sbjct: 437 HHSGGDVRYLQAALAGLKPFQVPSTKGGVLATFLNKYHWYEEYPTKPASFVLNGFIYSLL 496

Query: 242 GLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCD 301
           GLYDL+T++P  +  EA  L+ +G+ SLK ML  YD GS +SYDLRH++LG+AP +AR D
Sbjct: 497 GLYDLMTIAPPGQADEAEFLFREGMISLKGMLLFYDMGSVTSYDLRHVTLGVAPNLARWD 556

Query: 302 YHATHVNQLLLLATIEKDKIISDTG 326
           YHATH+NQLLLL+TIE + + + T 
Sbjct: 557 YHATHINQLLLLSTIENEPLFAQTA 581

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158294602|ref|XP_315706.4| AGAP005699-PA [Anopheles gambiae str. PEST] gi|157015640|gb|EAA10732.5| AGAP005699-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|312379128|gb|EFR25504.1| hypothetical protein AND_09103 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|322801307|gb|EFZ21994.1| hypothetical protein SINV_12711 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332018392|gb|EGI58986.1| D-glucuronyl C5-epimerase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307177516|gb|EFN66627.1| D-glucuronyl C5-epimerase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380028864|ref|XP_003698105.1| PREDICTED: D-glucuronyl C5-epimerase-like [Apis florea] Back     alignment and taxonomy information
>gi|328783223|ref|XP_393602.4| PREDICTED: d-glucuronyl C5-epimerase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|157107931|ref|XP_001650002.1| hypothetical protein AaeL_AAEL004916 [Aedes aegypti] gi|108879441|gb|EAT43666.1| AAEL004916-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170057349|ref|XP_001864445.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876767|gb|EDS40150.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query578
FB|FBgn0033087614 Hsepi "Heparan sulfate C5-epim 0.553 0.521 0.532 5.7e-91
MGI|MGI:2136405618 Glce "glucuronyl C5-epimerase" 0.550 0.514 0.509 4.5e-82
RGD|1565253618 Glce "glucuronic acid epimeras 0.555 0.519 0.501 3.2e-81
UNIPROTKB|O18756617 GLCE "D-glucuronyl C5-epimeras 0.550 0.515 0.503 5.2e-81
UNIPROTKB|H0YNP1553 GLCE "D-glucuronyl C5-epimeras 0.550 0.575 0.5 5.2e-81
UNIPROTKB|O94923617 GLCE "D-glucuronyl C5-epimeras 0.550 0.515 0.5 5.2e-81
UNIPROTKB|F1SIU0617 GLCE "Uncharacterized protein" 0.550 0.515 0.5 1.4e-80
UNIPROTKB|E2RAP3616 GLCE "Uncharacterized protein" 0.550 0.516 0.5 2.2e-80
ZFIN|ZDB-GENE-040630-8586 glceb "glucuronyl C5-epimerase 0.551 0.544 0.498 1.2e-79
UNIPROTKB|E1C1J5605 GLCE "Uncharacterized protein" 0.550 0.525 0.487 8.7e-79
FB|FBgn0033087 Hsepi "Heparan sulfate C5-epimerase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 173/325 (53%), Positives = 238/325 (73%)

Query:     4 VSLKLNHGSDFILGVTLSILSNSS-LSVALENSELQEMWRLHYVCSRDLITARGQDIYYG 62
             +S+ LN   D +L V L +++NSS L + ++N + +  + LHY+ +  L++ +  +IYYG
Sbjct:   276 ISIALNQTLDLLLSVDLLLVTNSSSLMITVQNRDTRHNYSLHYIPADLLLSVQDTNIYYG 335

Query:    63 IGCSST--WQTLTRDLLIDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLST 120
             +G S+   W+ +TRDL ID+QKG++  +K+  +K+ +S  +V  I   G G  DN+TLST
Sbjct:   336 LGGSALNKWRHITRDLHIDLQKGIM-GDKRSPLKIRRSDLEVISIGFLGLGFFDNITLST 394

Query:   121 SDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRA 180
             SDH+A FY  AEW V++QDPKTGGW NPVRR +  G  +L+PGW SAMGQGHAISVL+RA
Sbjct:   395 SDHLAHFYDAAEWFVHNQDPKTGGWTNPVRRSLN-GFAELRPGWISAMGQGHAISVLARA 453

Query:   181 YYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSL 240
             Y+HSGG+  YL  A   L+ +++    GGV ++F+DKF WYEEYPTTP  ++LNGFIYSL
Sbjct:   454 YWHSGGDERYLRAAAAGLQPYRVYSRDGGVLAQFMDKFYWYEEYPTTPPSYVLNGFIYSL 513

Query:   241 FGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARC 300
              GLYDL + +P    +EA  L+ QG+ SLK+ML ++DTGSG+SYDLRH+SLG+AP +AR 
Sbjct:   514 LGLYDLNSTAPGKIAREAGKLFAQGMHSLKKMLLLFDTGSGTSYDLRHLSLGVAPNLARW 573

Query:   301 DYHATHVNQLLLLATIEKDKIISDT 325
             DYHATHVNQLLLLATI+ D +I+ T
Sbjct:   574 DYHATHVNQLLLLATIDSDPLIAQT 598
GO:0016857 "racemase and epimerase activity, acting on carbohydrates and derivatives" evidence=IEA
GO:0006024 "glycosaminoglycan biosynthetic process" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
MGI|MGI:2136405 Glce "glucuronyl C5-epimerase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1565253 Glce "glucuronic acid epimerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|O18756 GLCE "D-glucuronyl C5-epimerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H0YNP1 GLCE "D-glucuronyl C5-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|O94923 GLCE "D-glucuronyl C5-epimerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIU0 GLCE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAP3 GLCE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040630-8 glceb "glucuronyl C5-epimerase b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1C1J5 GLCE "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9EPS3GLCE_MOUSE5, ., 1, ., 3, ., -0.50150.55190.5161yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query578
pfam06662189 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C- 2e-75
pfam06662189 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C- 4e-67
>gnl|CDD|219125 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus Back     alignment and domain information 
 Score =  237 bits (606), Expect = 2e-75
 Identities = 102/185 (55%), Positives = 125/185 (67%), Gaps = 4/185 (2%)

Query: 141 KTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKV 200
           K GGWP     ++  G  +L PGWYSAM QG AISVL+RAY  +G +  YL+ A +AL  
Sbjct: 3   KLGGWPYNFTYKLYEGFKELSPGWYSAMAQGQAISVLARAYQLTG-DEKYLDAAKKALNS 61

Query: 201 FKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALS 260
           F +P+ KGGV   F+DK+PWYEEYPTTP  ++LNGFIYSL GLYDL   S  +   EA  
Sbjct: 62  FLVPVEKGGVLDTFMDKYPWYEEYPTTPPSYVLNGFIYSLLGLYDL---STATYSDEAKE 118

Query: 261 LYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDK 320
           L+D+G+ SLK ML +YDTGS S YDLRH +LG  P +AR DYHA H+N LL L +I  D 
Sbjct: 119 LFDKGLKSLKAMLPLYDTGSWSYYDLRHTTLGNPPNLARWDYHALHINLLLALYSITGDP 178

Query: 321 IISDT 325
           I  D 
Sbjct: 179 IFKDY 183

This family represents the C-terminus of D-glucuronyl C5-epimerase (EC:5.1.3.-). Glucuronyl C5-epimerases catalyze the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans. Length = 189
>gnl|CDD|219125 pfam06662, C5-epim_C, D-glucuronyl C5-epimerase C-terminus Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 578
KOG3760|consensus594 100.0
KOG3760|consensus594 100.0
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 100.0
PF06662189 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; I 100.0
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.96
cd00249384 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase d 98.72
PF07221346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 97.64
PF07944 520 DUF1680: Putative glycosyl hydrolase of unknown fu 97.35
COG1331667 Highly conserved protein containing a thioredoxin 96.53
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 96.36
COG1331667 Highly conserved protein containing a thioredoxin 96.31
PF07944520 DUF1680: Putative glycosyl hydrolase of unknown fu 96.05
PF07221 346 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcN 95.94
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 95.58
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 95.54
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 95.35
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 95.21
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 95.06
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 94.86
KOG2244|consensus 786 94.53
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 94.45
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 94.27
PTZ00470522 glycoside hydrolase family 47 protein; Provisional 93.03
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 92.72
PF03663370 Glyco_hydro_76: Glycosyl hydrolase family 76 ; Int 92.57
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 89.98
PF07470336 Glyco_hydro_88: Glycosyl Hydrolase Family 88; Inte 89.96
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 88.53
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 88.04
COG3533589 Uncharacterized protein conserved in bacteria [Fun 87.49
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 87.24
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 85.04
KOG2787|consensus403 84.02
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 83.16
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 82.37
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 82.1
PF01532452 Glyco_hydro_47: Glycosyl hydrolase family 47; Inte 81.74
COG4225357 Predicted unsaturated glucuronyl hydrolase involve 80.89
>KOG3760|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.9e-103  Score=806.69  Aligned_cols=331  Identities=47%  Similarity=0.788  Sum_probs=319.4

Q ss_pred             Cc-eEEEcCCccceEEEEEEEEecCc-cEEEEEEecccCceEEEEEEeccceEEeeCCceEEecc--CCCCcchhhHHHH
Q psy7540           2 QT-VSLKLNHGSDFILGVTLSILSNS-SLSVALENSELQEMWRLHYVCSRDLITARGQDIYYGIG--CSSTWQTLTRDLL   77 (578)
Q Consensus         2 ~~-~~~~l~~~~d~~~s~~~~~~~~~-s~~v~~~~~~~~~~~~~hy~~~~~~i~~~~~~~~~g~g--~~~~w~~~trdl~   77 (578)
                      +| +|+.|++++|||||||||+..|+ ||||+++++|+.+.|.||||.++++|.+++++||||||  |.++|++|||||+
T Consensus       253 eg~~sv~L~~t~DlviSfDlk~~tn~sS~~v~~~~~~~~~l~~ihYv~~d~lv~~~~~diYygiG~sp~~~WstvTRDL~  332 (594)
T KOG3760|consen  253 EGAASVYLDKTPDLVISFDLKPYTNNSSFTVLAKMKQDDLLVLIHYVYSDYLVQKPKKDIYYGIGNSPIGEWSTVTRDLL  332 (594)
T ss_pred             cccEEEEcCCCCceEEEEeeEEeeCCceEEEEEeecccceEEEEEecchhhhhccccccceeecCCCCcccceehhHHHH
Confidence            45 99999999999999999997766 89999999999999999999999999999999999999  7899999999999


Q ss_pred             HHhhhhhhhhhhhhhhhcccCCceEEEEeeeccccccccccCchHHHHHHHHHHHHHHhcCCCCCCCcccccccccccCC
Q psy7540          78 IDVQKGVLLQEKKRKIKLVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATAEWLVNHQDPKTGGWPNPVRRRITAGI  157 (578)
Q Consensus        78 ~d~~k~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~n~~l~~~~~~~~F~~aAdWLl~~qd~~~G~W~~~~~~~~~~~~  157 (578)
                      |||+|||+..++|+.|..+..++++|+|.|+|.|++|||+++++.|+++|++|||||++||| +.|||+++|+|++++++
T Consensus       333 vDl~kg~~gdnrk~~k~~~~~~l~vvslgf~G~gf~dnIT~st~~H~aaFyaAadWlV~NQd-~kGGW~~pV~Rsl~egf  411 (594)
T KOG3760|consen  333 VDLAKGLSGDNRKKDKNVVLHALRVVSLGFRGEGFVDNITQSTEQHSAAFYAAADWLVKNQD-DKGGWSVPVERSLAEGF  411 (594)
T ss_pred             HHHHHhhcCCCcCCCcceeecceeeeeeeeccccchhheeehhhHHHHHHHHHHHHHhhCCC-CCCCCcchhhhhhhcCc
Confidence            99999998666666666777779999999999999999999999999999999999999999 88999999999999999


Q ss_pred             CCCCCCchhhhhhhHHHHHHHHHHHhcCCChhHHHHHHHHhhcccccccCCCeeeeecCCcceeecCCCCCCceeechHH
Q psy7540         158 GDLKPGWYSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFI  237 (578)
Q Consensus       158 ~~L~~gW~SaMaQG~aiSvL~RAY~~t~gD~kYL~aA~kal~~f~~p~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfi  237 (578)
                      ..|+|||+||||||||||||+|||.++ +|++||++|.+|+++|++.+++|||+++||+++.|||||||+|++|||||||
T Consensus       412 ~~L~PGW~SAMaQGhaISvL~RAy~h~-~De~yL~sAa~al~pyk~~S~dgGV~a~Fm~K~~WYEEYPTTP~SfVLNGF~  490 (594)
T KOG3760|consen  412 LVLPPGWHSAMAQGHAISVLTRAYKHF-NDEKYLKSAAKALKPYKINSSDGGVRAEFMGKNIWYEEYPTTPGSFVLNGFL  490 (594)
T ss_pred             cccCcchHhhhhcccchHHHHHHHHhc-CcHHHHHHHHhhcCCeEeecCCCceEEEEccccchhhhcCCCCcceeehhHH
Confidence            999999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhCCCccHHHHHHHHHHHHHHHhhhccCccCCCcceecccccccCCCCCcCCCchhHHHHHHHHHHHhhc
Q psy7540         238 YSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKIARCDYHATHVNQLLLLATIE  317 (578)
Q Consensus       238 ysLiGLYD~~~~t~d~~~~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it  317 (578)
                      ||||||||+.+..+.+..+||.+||.+||.|||+|||+||||+++.|||||+++|.+||+||||||++||+||++|+.|+
T Consensus       491 YSLiGLYDL~eTa~~Kia~EA~~Ly~~Gm~SLK~mLpLyDTGSGTiYDLRH~~LG~APNLARWDYHatHvnqL~llatId  570 (594)
T KOG3760|consen  491 YSLIGLYDLDETARAKIAQEAQELYSAGMRSLKQMLPLYDTGSGTIYDLRHVALGTAPNLARWDYHATHVNQLKLLATID  570 (594)
T ss_pred             HHhhhhhccchhhhHHHHHHHHHHHHHHHHHHHhhheeeecCCCceeehhhhhhccCcccccchhhhHHHHHHHHHhhcc
Confidence            99999999999888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCcccccccC
Q psy7540         318 KDKIISDTGVPVTTQWD  334 (578)
Q Consensus       318 ~D~~f~~~A~rW~~q~~  334 (578)
                      +||+|+++|+||..+.-
T Consensus       571 ~dpv~~~ta~RWkgY~~  587 (594)
T KOG3760|consen  571 KDPVLSKTADRWKGYAY  587 (594)
T ss_pred             ccHHHHHHHHHHHhhhh
Confidence            99999999999988643

>KOG3760|consensus Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function Back     alignment and domain information
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5 Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>KOG2244|consensus Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PTZ00470 glycoside hydrolase family 47 protein; Provisional Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [] Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>KOG2787|consensus Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query578
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 89/636 (13%), Positives = 179/636 (28%), Gaps = 228/636 (35%)

Query: 34  NSELQEMWRLHYVCSRDLITARGQDIYYGIGCSSTWQTLTRDLLIDVQKGVLLQEKKRKI 93
           + E  E  +  Y   +D+++           C        +D+  D+ K +L    K +I
Sbjct: 8   DFETGEH-QYQY---KDILSVFEDAFVDNFDC--------KDVQ-DMPKSIL---SKEEI 51

Query: 94  K-LVKSKFKVTHIHLYGSGSIDNLTLSTSDHMAQFYATA-----EWLVN-----HQDP-- 140
             ++ SK  V+            L     + + +F         ++L++      + P  
Sbjct: 52  DHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107

Query: 141 KTGGW---------------PNPVRR-----RITAGIGDLKPGWYSA---MGQGHAISVL 177
            T  +                  V R     ++   + +L+P        +  G   + +
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL-GSGKTWV 166

Query: 178 SRAYYHSGGNVTYLNTALRALKVFKLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFI 237
                           AL     +K       VQ K   K  W            LN   
Sbjct: 167 ----------------ALDVCLSYK-------VQCKMDFKIFW------------LN--- 188

Query: 238 YSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLGIAPKI 297
                  +    SP +  +    L  Q       +   + + S  S +++     I  ++
Sbjct: 189 ---LKNCN----SPETVLEMLQKLLYQ-------IDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 298 ARCDYHATHVNQLLLLATIEKDKIIS--DTG--VPVTTQWDPN--GYYYPTQIAQFGLSH 351
            R      + N LL+L  ++  K  +  +    + +TT+       +          L H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDH 293

Query: 352 YSKNLTEPE----------------PKRTVLED-------GDSIQGD---WVVPNSGGYA 385
           +S  LT  E                P+  +  +        +SI+     W         
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--------- 344

Query: 386 GRQYNQLVNSYVLNFHTSAMGQGHAISVLS----RAYYHSGGNVTYLNTALRALKVF--- 438
                + VN   L           +++VL     R  +               L VF   
Sbjct: 345 --DNWKHVNCDKLT-TIIES----SLNVLEPAEYRKMFDR-------------LSVFPPS 384

Query: 439 -KLPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFI-YSL---------FGLYDLVTLS 487
             +P       +  L    W++   +   V ++N    YSL           +  +  L 
Sbjct: 385 AHIP-------TILLSLI-WFDVIKSDVMV-VVNKLHKYSLVEKQPKESTISIPSI-YLE 434

Query: 488 PRSKQKEALSLYDQGITSLKRMLNMYDTGSGSSYDLRHISLG-----IAPKIARCDYHAT 542
            + K +   +L+       + +++ Y+      +D   +            I    +H  
Sbjct: 435 LKVKLENEYALH-------RSIVDHYNIPKT--FDSDDLIPPYLDQYFYSHIG---HHLK 482

Query: 543 HVNQ---------LLL-LATIEKDKIISDTGQRWAG 568
           ++           + L    +E+ KI  D    W  
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQ-KIRHD-STAWNA 516
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query578
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.92
2gz6_A388 N-acetyl-D-glucosamine 2-epimerase; anabaena SP. C 98.66
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 98.59
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 98.33
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 98.31
3gt5_A402 N-acetylglucosamine 2-epimerase; structural genomi 97.94
3pmm_A382 Putative cytoplasmic protein; structural genomics, 97.86
2zbl_A421 Putative isomerase; N-acyl-D-glucosamine 2-epimera 97.85
1nc5_A373 Hypothetical protein YTER; structural genomics, he 97.57
1fp3_A402 N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barr 97.5
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 97.45
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 97.14
2ahf_A377 Unsaturated glucuronyl hydrolase; alpha6/alpha6 ba 96.76
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.69
2zzr_A397 Unsaturated glucuronyl hydrolase; alpha barrel; 1. 96.67
3k11_A445 Putative glycosyl hydrolase; structural genomics, 96.62
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 96.6
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 96.45
3k7x_A349 LIN0763 protein; Q92DQ0, LKR23, NESG, structural g 96.08
3h7l_A586 Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, stru 95.53
1nc5_A373 Hypothetical protein YTER; structural genomics, he 95.19
3pmm_A382 Putative cytoplasmic protein; structural genomics, 93.28
1x9d_A538 Endoplasmic reticulum mannosyl-oligosaccharide 1, 87.27
3k11_A445 Putative glycosyl hydrolase; structural genomics, 87.17
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 86.0
1nxc_A478 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; 85.7
3gzk_A537 Cellulase; fold from GH9 from CAZY database, glyco 85.52
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 83.35
1dl2_A511 Class I alpha-1,2-mannosidase; alpha-alpha helix b 82.16
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 81.55
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 80.72
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
Probab=98.92  E-value=5.8e-08  Score=100.66  Aligned_cols=352  Identities=11%  Similarity=0.017  Sum_probs=191.3

Q ss_pred             hHHHHHHH-HHHHHH-HhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHh-cCCChhHHHHHHHH
Q psy7540         121 SDHMAQFY-ATAEWL-VNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYH-SGGNVTYLNTALRA  197 (578)
Q Consensus       121 ~~~~~~F~-~aAdWL-l~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~-t~gD~kYL~aA~ka  197 (578)
                      ++.++.+. +...+. ..-+|+ .||+...++.   ++ ...+. =-..+.||+.|.++++||++ | +++.|+++|+++
T Consensus        10 ~~~~~~l~~~~l~fw~~~~~D~-~GGf~~~~~~---d~-~~~~~-eK~l~~nar~i~~~a~a~~~~~-~~~~~~~~A~~~   82 (388)
T 2gz6_A           10 QLYKNALLNDVLPFWENHSLDS-EGGYFTCLDR---QG-KVYDT-DKFIWLQNRQVWTFSMLCNQLE-KRENWLKIARNG   82 (388)
T ss_dssp             HHHHHHHHHTHHHHHHHHCBCT-TSSBCCEEBT---TS-CEEEC-CEEHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHhcCCCC-CCCEEeEECC---CC-CcCCc-chhHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHH
Confidence            34445553 355554 556684 7786433322   11 11111 26788999999999999999 9 999999999999


Q ss_pred             hhccccc--ccCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHHHHHhhhcc
Q psy7540         198 LKVFKLP--IYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGITSLKRMLN  274 (578)
Q Consensus       198 l~~f~~p--~~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi~SLk~~Lp  274 (578)
                      ++.....  .++||+......+.....      ..-.+-+.-|.+.||-+++++|+++.+ +.|.++++.    +...+ 
T Consensus        83 ~~~l~~~~~~~~Gg~~~~~d~dg~~~~------~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~----i~~~~-  151 (388)
T 2gz6_A           83 AKFLAQHGRDDEGNWYFALTRGGEPLV------QPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNN----VLRRK-  151 (388)
T ss_dssp             HHHHHHHSBCTTSCBCSEECTTSCBCC------CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHTC--
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCccc------CCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----HHHHh-
Confidence            9987765  236887655422222111      123456777889999999999998743 345555543    22222 


Q ss_pred             Ccc-CCCcc-eecccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCccccccCcccccccCCCcccChhhHHhhhhhcc
Q psy7540         275 MYD-TGSGS-SYDLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDKIISDTGVPVTTQWDPNGYYYPTQIAQFGLSHY  352 (578)
Q Consensus       275 ~yD-~g~wS-~Ydl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y  352 (578)
                       .| .|.|. .++-      ..+. .+.+-+..=+.-|..|+.+|+|+.+++.|++......               .++
T Consensus       152 -~d~~g~~~~~~~~------~~~~-~~~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~---------------~~~  208 (388)
T 2gz6_A          152 -DNPKGKYTKTYPG------TRPM-KALAVPMILANLTLEMEWLLPQETLENVLAATVQEVM---------------GDF  208 (388)
T ss_dssp             --------------------CCCC-EETHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHH---------------HTT
T ss_pred             -cCCCcccCcccCC------CCCC-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHH
Confidence             12 23221 1110      1111 1234455555667889999999988887774333322               222


Q ss_pred             ccccCCCCCcceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChhHHHHHH
Q psy7540         353 SKNLTEPEPKRTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTAL  432 (578)
Q Consensus       353 ~k~l~~~~~~~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~  432 (578)
                      -.    ++.. .+.+   ....+|-.  .+...   .+.      ..|  |  .+..++-+|.|++..| ||++|++.|+
T Consensus       209 ~~----~~~g-~~~e---~~~~~w~~--~~~~~---~~~------~~p--g--h~~e~a~lL~~~~~~t-gd~~~~~~A~  264 (388)
T 2gz6_A          209 LD----QEQG-LMYE---NVAPDGSH--IDCFE---GRL------INP--G--HGIEAMWFIMDIARRK-NDSKTINQAV  264 (388)
T ss_dssp             EE----TTTT-EECS---EECTTSCC--CCSTT---TTE------ECH--H--HHHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             hc----cCCC-eEEE---EECCCCCC--CCCcc---cCc------CCC--C--HHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            11    1111 1111   11224521  11110   110      001  0  1234556899999988 7999999999


Q ss_pred             Hhhhccc---ccccCCCceeec-cCCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHH
Q psy7540         433 RALKVFK---LPIYKGGVQSKF-LDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKR  508 (578)
Q Consensus       433 kal~~f~---~p~~~GGv~~~~-~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~  508 (578)
                      +.++.+.   +..+.||+.... .++.+ .+.|.  ...-..=++--++.|+..++++++++   +-.+.+++..+-+.+
T Consensus       265 ~~~~~~~~~g~d~~~Gg~~~~~~~~g~~-~~~~~--~~~~~~W~qae~i~a~~~ly~~tgd~---~yl~~a~~~~~~~~~  338 (388)
T 2gz6_A          265 DVVLNILNFAWDNEYGGLYYFMDAAGHP-PQQLE--WDQKLWWVHLESLVALAMGYRLTGRD---ACWAWYQKMHDYSWQ  338 (388)
T ss_dssp             HHHHHHHHHHBCTTTCSBCSCEETTSCC-CSCTT--TTCEEHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCEEEeecCCCCc-cccCc--CCCcCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence            9988774   222336665321 11111 01111  01222235667888888888888765   344456666666667


Q ss_pred             HhccccCCCcccccccccccC--CCCCCCCCChHHHH
Q psy7540         509 MLNMYDTGSGSSYDLRHISLG--IAPKIARCDYHATH  543 (578)
Q Consensus       509 ~Lp~yD~G~wS~Ydl~h~~~~--~~p~~A~~~YH~lH  543 (578)
                      .++.-..|.|-.+--++....  .++......||..-
T Consensus       339 ~~~D~~~G~w~~~l~~~g~~~~~~~~~~~K~~YH~~~  375 (388)
T 2gz6_A          339 HFADPEYGEWFGYLNRRGEVLLNLKGGKWKGCFHVPR  375 (388)
T ss_dssp             HHBCTTTSSBCCEECTTSCBSSCBSCCSSCSSSHHHH
T ss_pred             hCcCCCCCceEEeeCCCcCCCCcCCCCCCCCCcchHH
Confidence            776555676655433333211  12233347899753
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP} Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa} Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A* Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3 Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A* Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} Back     alignment and structure
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus} Back     alignment and structure
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A* Back     alignment and structure
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A Back     alignment and structure
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Back     alignment and structure
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1 Back     alignment and structure
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A* Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query578
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 97.9
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.76
d1fp3a_402 N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) 97.68
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 97.42
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 97.37
d2afaa1411 Putative NAG isomerase YihS {Salmonella typhimuriu 97.06
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 96.48
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 95.49
d1nxca_467 Class I alpha-1;2-mannosidase, catalytic domain {M 95.19
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 95.04
d1nc5a_363 Hypothetical protein YteR {Bacillus subtilis [TaxI 94.88
d1dl2a_511 Class I alpha-1;2-mannosidase, catalytic domain {B 94.86
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 94.34
d2d5ja1377 Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 94.3
d1ia6a_431 Nonprocessive cellulase Cel9M {Clostridium cellulo 92.56
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 91.31
d1ks8a_433 Endo-b-1,4-glucanase {Termite (Nasutitermes takasa 91.22
d1hcua_488 Class I alpha-1;2-mannosidase, catalytic domain {T 90.42
d1x9da1453 Class I alpha-1;2-mannosidase, catalytic domain {H 87.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 83.72
d1g87a1454 Endo/exocellulase:cellobiose E-4, N-terminal domai 80.38
d1ut9a1511 Cellulose 1,4-beta-cellobiosidase CbhA {Clostridiu 80.34
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Six-hairpin glycosidases
family: N-acylglucosamine (NAG) epimerase
domain: N-acyl-D-glucosamine 2-epimerase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.90  E-value=0.0009  Score=67.29  Aligned_cols=346  Identities=14%  Similarity=0.034  Sum_probs=173.1

Q ss_pred             HHHHhcCCCCCCCcccccccccccCCCCCCCCchhhhhhhHHHHHHHHHHHhcC--CChhHHHHHHHHhhccc----ccc
Q psy7540         132 EWLVNHQDPKTGGWPNPVRRRITAGIGDLKPGWYSAMGQGHAISVLSRAYYHSG--GNVTYLNTALRALKVFK----LPI  205 (578)
Q Consensus       132 dWLl~~qd~~~G~W~~~~~~~~~~~~~~L~~gW~SaMaQG~aiSvL~RAY~~t~--gD~kYL~aA~kal~~f~----~p~  205 (578)
                      -|+-.-.|++.||..-.++..   +. ....+ -..+.|+..+-+|++||++++  +++.|+++|+++++.+.    ...
T Consensus        25 fW~~~~~D~~~GGf~~~ld~d---g~-~~~~~-k~~~~~~R~l~~fs~a~~~~~~~~~~~~~~~a~~g~~~L~~~~~~d~   99 (402)
T d1fp3a_          25 FWLEHSHDREHGGFFTCLGRD---GR-VYDDL-KYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAP   99 (402)
T ss_dssp             HHHHHSBCTTTSSBCCCBCTT---SC-BSCCC-EEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSST
T ss_pred             HHHhcCcCcCCCCeeeeECCC---CC-cCCCC-ceeeeeHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhCCccC
Confidence            456666787889986555542   21 12333 568999999999999998752  58999999999998654    345


Q ss_pred             cCCCeeeeecCCcceeecCCCCCCceeechHHHHHHhhhhhhhhCCCccH-HHHHHHHHHHHHHHhhhccCccCCCccee
Q psy7540         206 YKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQ-KEALSLYDQGITSLKRMLNMYDTGSGSSY  284 (578)
Q Consensus       206 ~~GGvl~~~~~~~~wyeEYpt~p~~~VLNGfiysLiGLYD~~~~t~d~~~-~~A~~lf~~Gi~SLk~~Lp~yD~g~wS~Y  284 (578)
                      ..||+......  .|=+.-.    ..-+=++.|+++++-.++++|+++.+ +.|.++|+    -+...+..=+.|.|+.-
T Consensus       100 ~~Gg~~~~vd~--dG~~~~~----~k~~Yd~Af~l~a~a~~~~~tg~~~~~~~a~~~~~----~i~~~~~~~~~g~~~~~  169 (402)
T d1fp3a_         100 PEKKCAFVLTR--DGRPVKV----QRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMD----QIVHWVREDPSGLGRPQ  169 (402)
T ss_dssp             TSCCBCSEECT--TSCEEEC----CSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHTCGGGGCCCC
T ss_pred             CCCCEEEEECC--CCCcCcc----cccccccHHHHHHHHHHHhccCCHHHHHHHHHHHH----HHHHHhhcccCCCCccc
Confidence            66776543221  2211111    11234788999999999999998743 34555554    33333322223444332


Q ss_pred             cccccccCCCCCcCCCchhHHHHHHHHHHHhhcCCc--cccccCcccccccCCCcccChhhHHhhhhhccccccCCCCCc
Q psy7540         285 DLRHISLGIAPKIARCDYHATHVNQLLLLATIEKDK--IISDTGVPVTTQWDPNGYYYPTQIAQFGLSHYSKNLTEPEPK  362 (578)
Q Consensus       285 dl~h~~~~~~pn~A~~~YH~lHi~qL~~L~~it~D~--~f~~~A~rW~~q~~~~~~y~p~~iaqygL~~Y~k~l~~~~~~  362 (578)
                      +-      .+....+-.+|-.-...+..|+..+.+.  .....+               ..+..--.-++    . ++..
T Consensus       170 ~~------~~~~~~g~~~~m~l~ea~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~----~-~~~~  223 (402)
T d1fp3a_         170 LP------GAVASESMAVPMMLLCLVEQLGEEDEELAGRYAQLG---------------HWCARRILQHV----Q-RDGQ  223 (402)
T ss_dssp             CT------TSCCEEETHHHHHHHHHHHHHHTTCHHHHHHTHHHH---------------HHHHHHHHTTE----E-TTTT
T ss_pred             cC------CCccccccchHHHHHHHHHHHccccchhHHHHHHHH---------------HHHHHHHHhhc----c-ccch
Confidence            21      1111122334433333344455433321  011111               01111101111    1 1111


Q ss_pred             ceeecccccccCCccccCCCCCcccccccccccccccccccccchhhHHHHHHHHHhhcCCChhHHHHHHHhhhccc---
Q psy7540         363 RTVLEDGDSIQGDWVVPNSGGYAGRQYNQLVNSYVLNFHTSAMGQGHAISVLSRAYYHSGGNVTYLNTALRALKVFK---  439 (578)
Q Consensus       363 ~~~l~~~~~~~~~Wl~~~~g~~~~~~y~~~~~~~~~~~w~SaMaQG~aiSvl~RAY~~t~gd~~YL~aA~kal~~f~---  439 (578)
                       .+.+   ....+|-...      ...+     ....||..-|    .+-++.+|+..+ +++.++..|.+++..+.   
T Consensus       224 -~~~e---~~~~~~~~~~------~~~~-----~~i~pGh~~e----~~wLll~a~~~~-~~~~~~~~a~~~~~~~~~~~  283 (402)
T d1fp3a_         224 -AVLE---NVSEDGEELS------GCLG-----RHQNPGHALE----AGWFLLRHSSRS-GDAKLRAHVIDTFLLLPFRS  283 (402)
T ss_dssp             -EECS---EEETTSCBCC------HHHH-----HEECHHHHHH----HHHHHHHHHHHT-TCHHHHHHHHHHHTHHHHHH
T ss_pred             -hHHh---hhccccCccc------Cccc-----CcCCcchhhH----HHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHh
Confidence             1111   1112232110      0000     0122332222    123677899888 69999997766554432   


Q ss_pred             -ccccCCCceeeccCCCceEeeCCCCCCceeehhHHHHHHHhHhhhhcCCcchhHHHHHHHHHHHHHHHHHhccccCCCc
Q psy7540         440 -LPIYKGGVQSKFLDKFPWYEEYPTTPAVFILNGFIYSLFGLYDLVTLSPRSKQKEALSLYDQGITSLKRMLNMYDTGSG  518 (578)
Q Consensus       440 -~p~~~GGv~~~~~~~~~wyeEYpt~p~s~VLNGfIysL~GLyD~~~~~~~~~~~~A~~lF~~Gl~sLk~~Lp~yD~G~w  518 (578)
                       +..+.||+.......+..-.+..  .....+=-.-.++.|+-+++++++++   +..+.+.+-.+-+.+.+..=+.|.|
T Consensus       284 g~d~~~ggl~~~~~~~g~~~~~~~--~~~k~~W~qaE~i~a~l~ly~~tgd~---~~l~~a~~l~~~~~~~f~D~~~G~W  358 (402)
T d1fp3a_         284 GWDADHGGLFYFQDADGLCPTQLE--WAMKLWWPHSEAMIAFLMGYSESGDP---ALLRLFYQVAEYTFRQFRDPEYGEW  358 (402)
T ss_dssp             HBCTTTCSBCSCEETTSCCCSSTT--TTCEEHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHTBCTTTSSB
T ss_pred             CccCCCCeEEEEecCCCCcccccc--chHHHHHHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHhCCCCCCCee
Confidence             33455666532211111111111  12344555777889999999998765   4555556666666677753344554


Q ss_pred             ccccccccc--cCCCCCCCCCChHHHH
Q psy7540         519 SSYDLRHIS--LGIAPKIARCDYHATH  543 (578)
Q Consensus       519 S~Ydl~h~~--~~~~p~~A~~~YH~lH  543 (578)
                      =.+--....  .......++..||..-
T Consensus       359 ~~~~~~~g~~~~~~k~~p~~~~YH~~r  385 (402)
T d1fp3a_         359 FGYLNREGKVALTIKGGPFKGCFHVPR  385 (402)
T ss_dssp             CCEECTTSCEEECCSSCSSCCSSHHHH
T ss_pred             EeeECCCCCCCccCCCCCCCCcchHHH
Confidence            332211111  1111224677899654
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nxca_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]} Back     information, alignment and structure
>d1ia6a_ a.102.1.2 (A:) Nonprocessive cellulase Cel9M {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ks8a_ a.102.1.2 (A:) Endo-b-1,4-glucanase {Termite (Nasutitermes takasagoensis) [TaxId: 62960]} Back     information, alignment and structure
>d1hcua_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic domain {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1g87a1 a.102.1.2 (A:3-456) Endo/exocellulase:cellobiose E-4, N-terminal domain {Clostridium cellulolyticum, atcc 35319 [TaxId: 1521]} Back     information, alignment and structure
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase CbhA {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure