Psyllid ID: psy7548

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130----
Protein Sequence
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR
Secondary Structure (PSIPRED)
ccEEEEEcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccEEEEEccccccccccccEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccEEEEcccEEEEEEEEcc
Coil and Loop (DISEMBL)
MNHFEILNCNVNSTLEEIKENYKSLILKyhpdknseHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNiyksvslsdmehkgesqmftypcrcgaefcieeqdtegdssddnilIACDTCSLLLEITAR
Flexible Loop (DISEMBL)
mnhfeilncnvNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTegdssddnilIACDTCSllleitar
Low Complexity Region (SEG)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR
Disordered region (IsUnstruct)
***FEILNCNVNSTLEEIKENYKSLILKYHPD****HQEMFLKINEAWNILKD********************IY**************QMFTYPCRCGAEFCIEE*********DNILIACDTCSLLLEI***
Disordered Region (DISOPRED)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES****************SLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR
Disordered Region (DISEMBL)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR
Disordered Region (DISPRO)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ*T***IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	134	2.2.26 [Sep-21-2011]
Q54CI5	170	DPH4 homolog OS=Dictyoste	yes	N/A	0.932	0.735	0.320	2e-15
Q0VBY7	148	DnaJ homolog subfamily C	yes	N/A	0.932	0.844	0.3	5e-14
Q91ZF0	196	DnaJ homolog subfamily C	yes	N/A	0.932	0.637	0.292	2e-13
Q6P3W2	148	DnaJ homolog subfamily C	yes	N/A	0.932	0.844	0.3	9e-13
Q9UUG3	139	Diphthamide biosynthesis	yes	N/A	0.917	0.884	0.326	1e-12
Q7M9T3	374	Chaperone protein DnaJ OS	yes	N/A	0.455	0.163	0.437	1e-10
P63036	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10
P63037	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10
Q5E954	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10
P31689	397	DnaJ homolog subfamily A	no	N/A	0.664	0.224	0.336	2e-10

>sp|Q54CI5|DPH4_DICDI DPH4 homolog OS=Dictyostelium discoideum GN=dph4 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 31/156 (19%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM--------------------- 40
           N++EIL  ++++ +EEIK++Y+ L L YHPDK ++ + +                     
Sbjct: 15  NYYEILKVSIDADIEEIKKSYRKLALLYHPDKLNKEENIEENINNFSNCLVNNNNNNNNS 74

Query: 41  ----FLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPC 96
               F  I  AW  LKD+  RK Y+S LL Q++   ++   + L DME   E+  + YPC
Sbjct: 75  NTKDFNDIQIAWETLKDDLLRKQYDSLLLEQKRQKYSVSDEIDLDDMEFIEENSEYVYPC 134

Query: 97  RCGAEFCI-EEQDTEGDSSDDNILIACDTCSLLLEI 131
           RCG  + I E+Q +EG       ++ C  CSL +++
Sbjct: 135 RCGDHYIITEDQLSEGSD-----VVCCSGCSLSIKV 165

Stimulates the ATPase activity of several Hsp70-type chaperones.
Dictyostelium discoideum (taxid: 44689)

>sp|Q0VBY7|DJC24_BOVIN DnaJ homolog subfamily C member 24 OS=Bos taurus GN=DNAJC24 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 79/140 (56%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++++ ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 10  DWYSILGADPSASVSDLKQKYQKLILMYHPDKQSADAPAGSVEECIQKFIEIDQAWKILG 69

Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q       +M  +   + L +M    +   F+  CRCG ++ + +     
Sbjct: 70  NEETKKEYDLQRHEDDLRNMGPVDARIYLEEMSWNEDDHSFSLSCRCGGKYSVSK----- 124

Query: 112 DSSDDNILIACDTCSLLLEI 131
           D +++  LI+CDTCSL++E+
Sbjct: 125 DEAEEVTLISCDTCSLIIEL 144

Stimulates the ATPase activity of several Hsp70-type chaperones.

Bos taurus (taxid: 9913)

>sp|Q91ZF0|DJC24_MOUSE DnaJ homolog subfamily C member 24 OS=Mus musculus GN=Dnajc24 PE=1 SV=3

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 58  DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 117

Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q    +  ++  +   V L +M      + F   CRCG ++ + +     
Sbjct: 118 NEETKKKYDLQRHEDELRNVGPVDAQVRLEEMSWNQGDESFFLSCRCGGKYTVSK----- 172

Query: 112 DSSDDNILIACDTCSLLLEI 131
           D + +  LI+CD CSL++E+
Sbjct: 173 DEAQEATLISCDACSLIVEL 192

Stimulates the ATPase activity of several Hsp70-type chaperones.

Mus musculus (taxid: 10090)

>sp|Q6P3W2|DJC24_HUMAN DnaJ homolog subfamily C member 24 OS=Homo sapiens GN=DNAJC24 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 10  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 69

Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + + + E 
Sbjct: 70  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE 129

Query: 112 DSSDDNILIACDTCSLLLEI 131
            S     LI+CDTCSL++E+
Sbjct: 130 VS-----LISCDTCSLIIEL 144

Stimulates the ATPase activity of several Hsp70-type chaperones.

Homo sapiens (taxid: 9606)

>sp|Q9UUG3|DPH4_SCHPO Diphthamide biosynthesis protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph4 PE=3 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 74/138 (53%), Gaps = 15/138 (10%)

Query: 1   MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKIN---EAWNILKDEK 55
           MNH+ +LN     T   +EIKE Y+  +L +HPDK  E   +   I+   EA+ +L  EK
Sbjct: 1   MNHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEK 60

Query: 56  ERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG--AEFCIEEQDTEGDS 113
           +R+ Y+   + Q++   + Y  V LS+ E   ++  + YPCRCG    + + E D E + 
Sbjct: 61  DRQQYQ---IKQEEESSHYYSIVDLSEFEEL-DNGSYYYPCRCGDLGGYVVTEDDLENNR 116

Query: 114 SDDNILIACDTCSLLLEI 131
           S    ++ C  CSL +++
Sbjct: 117 S----VVPCMGCSLTIQV 130

Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q7M9T3|DNAJ_WOLSU Chaperone protein DnaJ OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 47/64 (73%), Gaps = 3/64 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKER 57
           +++EIL    +++ EEIK+ Y+ + +KYHPD+N   SE +EMF ++NEA+ +L DE +R
Sbjct: 4  FDYYEILEIERSASGEEIKKAYRKMAMKYHPDRNEGSSEAEEMFKRVNEAYQVLSDEGKR 63

Query: 58 KLYE 61
          +LY+
Sbjct: 64 QLYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Wolinella succinogenes (taxid: 844)

>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 OS=Rattus norvegicus GN=Dnaja1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Rattus norvegicus (taxid: 10116)

>sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Mus musculus (taxid: 10090)

>sp|Q5E954|DNJA1_BOVIN DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Bos taurus (taxid: 9913)

>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYES 62
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+ 
Sbjct: 7  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDK 66

Query: 63 ---QLLSQQQTHMNIYKSVSLSDMEHKGESQM 91
             Q + +          + + DM   G  +M
Sbjct: 67 GGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRM 98

Co-chaperone of Hsc70. Seems to play a role in protein import into mitochondria.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
330845463	141	hypothetical protein DICPUDRAFT_13347 [D	0.940	0.893	0.373	4e-18
281211055	142	DNAJ heat shock N-terminal domain-contai	0.947	0.894	0.374	6e-18
157112326	157	hypothetical protein AaeL_AAEL000936 [Ae	0.970	0.828	0.299	9e-18
330840953	157	hypothetical protein DICPUDRAFT_83095 [D	0.932	0.796	0.368	2e-17
312372810	138	hypothetical protein AND_30094 [Anophele	0.940	0.913	0.314	3e-17
384251044	160	DnaJ-domain-containing protein [Coccomyx	0.962	0.806	0.333	8e-17
170066895	150	zinc finger [Culex quinquefasciatus] gi|	0.962	0.86	0.281	1e-16
195111767	197	GI22522 [Drosophila mojavensis] gi|19391	0.955	0.649	0.322	3e-16
334331629	148	PREDICTED: dnaJ homolog subfamily C memb	0.940	0.851	0.333	4e-16
284447355	145	DnaJ (Hsp40) homolog, subfamily C, membe	0.932	0.862	0.335	5e-16

>gi|330845463|ref|XP_003294604.1| hypothetical protein DICPUDRAFT_13347 [Dictyostelium purpureum] gi|325074900|gb|EGC28867.1| hypothetical protein DICPUDRAFT_13347 [Dictyostelium purpureum]

 Score = 96.3 bits (238), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 16/142 (11%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--------NSEHQEM----FLKINEAWN 49
           N++E L  ++++  EEIK++Y+ L+L YHPDK        NS+   +    F +I ++W 
Sbjct: 2   NYYETLKVSIDAPYEEIKKSYRKLVLLYHPDKISNDHSSFNSDSGNVANKEFNEIQKSWE 61

Query: 50  ILKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT 109
            LKD+  RK Y++ LL QQ+   ++   V L DME+  E   +TYPCRCG ++ I    T
Sbjct: 62  TLKDDALRKQYDALLLEQQRQKYSVSDEVDLDDMEYLEEEGQYTYPCRCGDQYII----T 117

Query: 110 EGDSSDDNILIACDTCSLLLEI 131
           E   S+ N ++ C  CSL ++I
Sbjct: 118 EDQLSEGNDVVCCSGCSLSIKI 139

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|281211055|gb|EFA85221.1| DNAJ heat shock N-terminal domain-containing protein [Polysphondylium pallidum PN500]

 Score = 95.5 bits (236), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 78/139 (56%), Gaps = 12/139 (8%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQ------EMFLKINEAWNILK 52
           MNH+EIL   VN+  ++IK+ + S +L YHPDK   SE Q      +MF KI +AW  L+
Sbjct: 1   MNHYEILGIEVNADYKDIKKAFSSKVLLYHPDKLVLSEQQHDVVDIDMFQKIQQAWECLR 60

Query: 53  DEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGD 112
           D + R  Y++ LL  Q+   +I   V L DME+  +   F+YPCRC  ++ I+E   E  
Sbjct: 61  DPENRSKYDAYLLENQRQKYSISDEVDLDDMEYNEDLSQFSYPCRCNGQYTIDESQLENG 120

Query: 113 SSDDNILIACDTCSLLLEI 131
                 + +C  CSL +++
Sbjct: 121 EE----IASCQNCSLTIKV 135

Source: Polysphondylium pallidum PN500

Species: Polysphondylium pallidum

Genus: Polysphondylium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|157112326|ref|XP_001657497.1| hypothetical protein AaeL_AAEL000936 [Aedes aegypti] gi|108883770|gb|EAT47995.1| AAEL000936-PA [Aedes aegypti]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 89/147 (60%), Gaps = 17/147 (11%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------------NSEHQEMFLKINEAW 48
           M+H++ILN   ++TL+EI+ +Y+ L L++HPDK            ++   + F++I+EAW
Sbjct: 15  MSHYQILNVAPDATLDEIRRSYQLLALRFHPDKLSLQNCSIAQEESAASADQFIRIDEAW 74

Query: 49  NILKDEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQ 107
            +L+DE+ R++Y+++L+ +  +    + + +  +D  H+ E   + + CRCG  + +   
Sbjct: 75  KVLRDEEARRVYDAELMQRTCREEYFVNEVLRRADFRHEQEEDYYYHTCRCGGLYVL--- 131

Query: 108 DTEGDSSDDNILIACDTCSLLLEITAR 134
             E   +D++  IACD CSL++++ A+
Sbjct: 132 -PENLGADESCYIACDECSLVVQVNAK 157

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|330840953|ref|XP_003292471.1| hypothetical protein DICPUDRAFT_83095 [Dictyostelium purpureum] gi|325077278|gb|EGC31001.1| hypothetical protein DICPUDRAFT_83095 [Dictyostelium purpureum]

 Score = 94.0 bits (232), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 81/141 (57%), Gaps = 16/141 (11%)

Query: 3   HFEILNCNVNSTLEEIKENYKSLILKYHPDKNS-EHQEM-----------FLKINEAWNI 50
           ++E L  ++++  EEIK++Y+ L+L YHPDK S +H              F +I ++W  
Sbjct: 15  YYETLKVSIDAPYEEIKKSYRKLVLLYHPDKISNDHSSFNSDSGNVANKEFNEIQKSWET 74

Query: 51  LKDEKERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTE 110
           LKD+  RK Y++ LL QQ+   ++   V L DME+  E   +TYPCRCG ++ I    TE
Sbjct: 75  LKDDALRKQYDALLLEQQRQKYSVSDEVDLDDMEYLEEEGQYTYPCRCGDQYII----TE 130

Query: 111 GDSSDDNILIACDTCSLLLEI 131
              S+ N ++ C  CSL ++I
Sbjct: 131 DQLSEGNDVVCCSGCSLSIKI 151

Source: Dictyostelium purpureum

Species: Dictyostelium purpureum

Genus: Dictyostelium

Order: Dictyosteliida

Superkingdom: Eukaryota

>gi|312372810|gb|EFR20688.1| hypothetical protein AND_30094 [Anopheles darlingi]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 85/140 (60%), Gaps = 14/140 (10%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--------SEHQEMFLKINEAWNILK 52
           M+H+E+L    ++T EEI+++Y++L L+YHPDK             E F++I+EAW +L+
Sbjct: 1   MSHYEVLQVPADATTEEIRKSYQTLALQYHPDKRKGGNDGTKGSETENFVRIDEAWKVLR 60

Query: 53  DEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           DE++R++Y+++L+ Q  Q    + ++++L D E   E    ++ CRCG  + + ++    
Sbjct: 61  DEQKRRVYDAELMQQSCQEEYFVNETLTLEDFEKHEEEDYRSHVCRCGGFYILPDEPI-- 118

Query: 112 DSSDDNILIACDTCSLLLEI 131
               + I + CD CSL++++
Sbjct: 119 ---TEKIYVCCDECSLVVQV 135

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|384251044|gb|EIE24522.1| DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169]

 Score = 91.7 bits (226), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 15/144 (10%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILK 52
           MNH+E L+   +++ E I+  Y++ +L+ HPDK +        +    FL++ +AW +LK
Sbjct: 9   MNHYEALDVASDASQESIRTAYRAAVLRLHPDKVASQTGQKDWQRTAEFLRVQQAWEVLK 68

Query: 53  DEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQM----FTYPCRCGAEFCIEEQ 107
           D   R  Y   L++Q  Q  + +   V L DM       +    FTYPCRCG+ F + E 
Sbjct: 69  DTHRRAAYNQLLVAQALQKELAVSAEVDLDDMLCHDNPIVALCTFTYPCRCGSSFTLSEA 128

Query: 108 DTEGDSSDDNILIACDTCSLLLEI 131
           D   DS  D+ L+ C  CSL + +
Sbjct: 129 DLSEDS--DSALVQCQNCSLAIRV 150

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|170066895|ref|XP_001868266.1| zinc finger [Culex quinquefasciatus] gi|167863074|gb|EDS26457.1| zinc finger [Culex quinquefasciatus]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 86/142 (60%), Gaps = 13/142 (9%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--------EMFLKINEAWNILKD 53
           +H ++LN   N++ +EI+  Y++L L++HPDK   H         + F++I+EAW +L+D
Sbjct: 13  SHLQVLNVAQNASFDEIRRAYQALALRFHPDKRLSHPAPEEPNSNDSFIRIDEAWKVLRD 72

Query: 54  EKERKLYESQLL-SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGD 112
           ++ R++Y+++L+ S  +    + ++++ ++  H+ E   + + CRCG  + +     +G 
Sbjct: 73  DQARRVYDAELMQSTCREEYFVNETLTRAEFRHEEEEGYYYHTCRCGGLYVL----PDGL 128

Query: 113 SSDDNILIACDTCSLLLEITAR 134
             D++  I CD CSL++++ A+
Sbjct: 129 GPDESCYIGCDECSLVVQVNAK 150

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195111767|ref|XP_002000449.1| GI22522 [Drosophila mojavensis] gi|193917043|gb|EDW15910.1| GI22522 [Drosophila mojavensis]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 85/186 (45%), Gaps = 58/186 (31%)

Query: 1   MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------------------NSEHQEMFL 42
           +N +E+LN N  +T EE+K NYK LIL+ HPDK                  N E    F 
Sbjct: 4   LNFYELLNANATATFEELKRNYKQLILQCHPDKLQQQQTVAVTVTANESDPNRESDNNFN 63

Query: 43  KINEAWNILKDEKERKLYESQLL-SQQQTHMNIYKSVSLSDMEHKGESQM---------- 91
            INEAWN LKD  +RK Y+++LL S+ + H NIY SV+LSDM H+   +M          
Sbjct: 64  AINEAWNTLKDPIKRKHYDAELLQSKFEKHNNIYASVTLSDM-HRTRVEMAEDDEEGENE 122

Query: 92  --------------------------FTYPCRCGAEFCI--EEQDTEGDSSDDNILIACD 123
                                     + Y CRCG ++ +  +E   E       +++ C 
Sbjct: 123 NENEIETDKESATTTTTAAAAKWSSAYAYDCRCGGQYVLLDDESQREQQPRASEMIVECS 182

Query: 124 TCSLLL 129
            CSL++
Sbjct: 183 ECSLVI 188

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334331629|ref|XP_001380365.2| PREDICTED: dnaJ homolog subfamily C member 24-like [Monodelphis domestica]

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 15/141 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + +L    +++L+++K+ Y+ LIL YHPDK S         EH + F++I++AW IL 
Sbjct: 10  DWYSVLGAEPSASLKDLKQKYQKLILMYHPDKQSADVPAGAVEEHVQKFIEIDQAWKILG 69

Query: 53  DEKERKLYESQLLSQQ-QTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q      ++   +   + L DM    + Q FT  CRCG ++C+ +     
Sbjct: 70  NEETKKAYDLQRREDDLRSSGPVDAQICLEDMLWNKDDQCFTLSCRCGGKYCVSK----- 124

Query: 112 DSSDDNILIACDTCSLLLEIT 132
           D +++  LI CDTCSL++EI 
Sbjct: 125 DEAEEVNLICCDTCSLIIEIV 145

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|284447355|ref|NP_001037943.2| DnaJ (Hsp40) homolog, subfamily C, member 24 [Xenopus (Silurana) tropicalis] gi|197246665|gb|AAI68456.1| dnajc24 protein [Xenopus (Silurana) tropicalis]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL    + T  E+K+ Y+ L L YHPDK S         E  + F++IN+AW IL 
Sbjct: 10  DWYSILGAKPSDTQAEVKQKYQKLALLYHPDKQSADMMAGQAGEGAQRFIEINQAWKILG 69

Query: 53  DEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ +K Y+ Q    + T M  +   V   D+    E+ ++++PCRCG  + + E D + 
Sbjct: 70  NEEAKKAYDLQQREAELTKMWPVDNQVHWEDLSWDPETMVYSFPCRCGGSYAMTESDRK- 128

Query: 112 DSSDDNILIACDTCSLLLEI 131
               D  L+ CD+CSL++EI
Sbjct: 129 ----DVSLVNCDSCSLIIEI 144

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	134
ZFIN|ZDB-GENE-040426-1153	149	dnajc24 "DnaJ (Hsp40) homolog,	0.910	0.818	0.323	1.8e-16
UNIPROTKB|Q0VBY7	148	DNAJC24 "DnaJ homolog subfamil	0.917	0.831	0.304	6e-16
POMBASE|SPAC926.05c	139	dph4 "diphthamide biosynthesis	0.917	0.884	0.326	2e-15
MGI|MGI:1919522	196	Dnajc24 "DnaJ (Hsp40) homolog,	0.917	0.627	0.297	4.2e-15
UNIPROTKB|Q6P3W2	148	DNAJC24 "DnaJ homolog subfamil	0.917	0.831	0.304	6.9e-15
DICTYBASE|DDB_G0292980	170	dph4 "diphthamide biosynthesis	0.873	0.688	0.333	1.4e-14
TAIR|locus:2124685	174	AT4G10130 [Arabidopsis thalian	0.783	0.603	0.350	4.9e-14
GENEDB_PFALCIPARUM|MAL13P1.162	247	MAL13P1.162 "DNAJ-like protein	0.686	0.372	0.36	1.7e-11
UNIPROTKB|C0H5E9	247	MAL13P1.162 "DNAJ like protein	0.686	0.372	0.36	1.7e-11
CGD|CAL0004339	149	orf19.2018 [Candida albicans (	0.970	0.872	0.305	4.5e-11

ZFIN|ZDB-GENE-040426-1153 dnajc24 "DnaJ (Hsp40) homolog, subfamily C, member 24" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/136 (32%), Positives = 76/136 (55%)

Query:     6 ILNCNVNSTLEEIKENYKSLILKYHPDKN----SE-----HQEMFLKINEAWNILKDEKE 56
             IL       L+ +K+ Y+ L+L +HPDK     SE     H + F+ I++AW IL +E+ 
Sbjct:    14 ILGACPTDDLQVLKQKYQKLVLMFHPDKQRPDVSEEEAEQHLQRFIDIDQAWKILSNEES 73

Query:    57 RKLYESQLLS-QQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSD 115
             R  Y  QL + + +    +   ++L DM    E++ ++Y CRCG EF +E+ +T+    +
Sbjct:    74 RNEYNLQLRACELKQSWPVDAHITLDDMNWDYETECYSYTCRCGGEFILEKDETQ----E 129

Query:   116 DNILIACDTCSLLLEI 131
                ++ CD+CSL +E+
Sbjct:   130 VETVVCCDSCSLSIEV 145

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q0VBY7 DNAJC24 "DnaJ homolog subfamily C member 24" [Bos taurus (taxid:9913)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 42/138 (30%), Positives = 78/138 (56%)

Query:     4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
             + IL  + ++++ ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct:    12 YSILGADPSASVSDLKQKYQKLILMYHPDKQSADAPAGSVEECIQKFIEIDQAWKILGNE 71

Query:    55 KERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDS 113
             + +K Y+ Q       +M  +   + L +M    +   F+  CRCG ++ + +     D 
Sbjct:    72 ETKKEYDLQRHEDDLRNMGPVDARIYLEEMSWNEDDHSFSLSCRCGGKYSVSK-----DE 126

Query:   114 SDDNILIACDTCSLLLEI 131
             +++  LI+CDTCSL++E+
Sbjct:   127 AEEVTLISCDTCSLIIEL 144

GO:0046872 "metal ion binding" evidence=IEA

POMBASE|SPAC926.05c dph4 "diphthamide biosynthesis protein Dph4 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 45/138 (32%), Positives = 72/138 (52%)

Query:     1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKIN---EAWNILKDEK 55
             MNH+ +LN     T   +EIKE Y+  +L +HPDK  E   +   I+   EA+ +L  EK
Sbjct:     1 MNHYSVLNLKDGKTYTDDEIKEAYRKALLLFHPDKCKEKPSVVYTIDQVKEAYQVLSSEK 60

Query:    56 ERKLYESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCG--AEFCIEEQDTEGDS 113
             +R+ Y+   + Q++   + Y  V LS+ E       + YPCRCG    + + E D E + 
Sbjct:    61 DRQQYQ---IKQEEESSHYYSIVDLSEFEELDNGSYY-YPCRCGDLGGYVVTEDDLENNR 116

Query:   114 SDDNILIACDTCSLLLEI 131
             S    ++ C  CSL +++
Sbjct:   117 S----VVPCMGCSLTIQV 130

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1919522 Dnajc24 "DnaJ (Hsp40) homolog, subfamily C, member 24" [Mus musculus (taxid:10090)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/138 (29%), Positives = 75/138 (54%)

Query:     4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
             + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct:    60 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 119

Query:    55 KERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDS 113
             + +K Y+ Q    +  ++  +   V L +M      + F   CRCG ++ + +     D 
Sbjct:   120 ETKKKYDLQRHEDELRNVGPVDAQVRLEEMSWNQGDESFFLSCRCGGKYTVSK-----DE 174

Query:   114 SDDNILIACDTCSLLLEI 131
             + +  LI+CD CSL++E+
Sbjct:   175 AQEATLISCDACSLIVEL 192

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q6P3W2 DNAJC24 "DnaJ homolog subfamily C member 24" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 42/138 (30%), Positives = 74/138 (53%)

Query:     4 FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
             + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct:    12 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 71

Query:    55 KERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDS 113
             + ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + + + E  S
Sbjct:    72 ETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEVS 131

Query:   114 SDDNILIACDTCSLLLEI 131
                  LI+CDTCSL++E+
Sbjct:   132 -----LISCDTCSLIIEL 144

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0292980 dph4 "diphthamide biosynthesis protein 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 41/123 (33%), Positives = 68/123 (55%)

Query:    10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ 69
             N    +EE   N+ + ++  + + N+ + + F  I  AW  LKD+  RK Y+S LL Q++
Sbjct:    48 NKEENIEENINNFSNCLVNNNNNNNNSNTKDFNDIQIAWETLKDDLLRKQYDSLLLEQKR 107

Query:    70 THMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCI-EEQDTEGDSSDDNILIACDTCSLL 128
                ++   + L DME   E+  + YPCRCG  + I E+Q +EG  SD   ++ C  CSL 
Sbjct:   108 QKYSVSDEIDLDDMEFIEENSEYVYPCRCGDHYIITEDQLSEG--SD---VVCCSGCSLS 162

Query:   129 LEI 131
             +++
Sbjct:   163 IKV 165

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2124685 AT4G10130 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 40/114 (35%), Positives = 64/114 (56%)

Query:     3 HFEILNCNVNSTLEEIKENYKSLILKYHPDK------NSEHQEMFLKINEAWNILKDEKE 56
             ++EIL+   +++ EEI+ +Y+S IL  HPDK      +S   E FLKI +AW +L D + 
Sbjct:    12 YYEILSVKEDASYEEIRNSYRSAILHSHPDKLNNTSRSSSDDEKFLKIQKAWEVLSDAEL 71

Query:    57 RKLYESQLLSQQQTHMNIYKSVSLSDM--EHKGESQMFTYPCRCGAEFCIEEQD 108
             R +Y++ L S +   +     +S+ DM  E  G+     Y CRCG  FC++  +
Sbjct:    72 RVVYDNDLRSSRHDGITA-DEISIEDMSVEITGDVIDLFYQCRCGDYFCVDSSE 124

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GENEDB_PFALCIPARUM|MAL13P1.162 MAL13P1.162 "DNAJ-like protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:     2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57
             N ++ILN   +S   EIK+ Y+ L LKYHPD+N     E ++ F +I EA+  L D+ ++
Sbjct:    43 NFYDILNIKKDSNKNEIKQAYRKLALKYHPDRNPNNRKESEQKFREITEAYETLSDDNKK 102

Query:    58 KLYESQLLS---QQQTHMNIYKSVSLSD-MEHKGESQMFT 93
             K+Y+SQL +       + N Y + S S+ M +  +S+  T
Sbjct:   103 KMYDSQLNNGFYSNNFNNNYYNTTSNSNHMNYNYQSKRMT 142

GO:0006986 "response to unfolded protein" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|C0H5E9 MAL13P1.162 "DNAJ like protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 36/100 (36%), Positives = 58/100 (58%)

Query:     2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57
             N ++ILN   +S   EIK+ Y+ L LKYHPD+N     E ++ F +I EA+  L D+ ++
Sbjct:    43 NFYDILNIKKDSNKNEIKQAYRKLALKYHPDRNPNNRKESEQKFREITEAYETLSDDNKK 102

Query:    58 KLYESQLLS---QQQTHMNIYKSVSLSD-MEHKGESQMFT 93
             K+Y+SQL +       + N Y + S S+ M +  +S+  T
Sbjct:   103 KMYDSQLNNGFYSNNFNNNYYNTTSNSNHMNYNYQSKRMT 142

GO:0006986 "response to unfolded protein" evidence=ISS

CGD|CAL0004339 orf19.2018 [Candida albicans (taxid:5476)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 44/144 (30%), Positives = 73/144 (50%)

Query:     1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERK 58
             ++++++L     +++ E+K+ YKS +L  HPDK  NS  Q     I +A+  L D   RK
Sbjct:     2 ISYYKVLGVTPEASIPELKQAYKSKLLTSHPDKIDNSSAQVDIPLIKQAFATLVDPTSRK 61

Query:    59 LYESQLL-SQQQTHMNIYKS----VSLSDMEHKGESQMFTYPCRCGAE--FCIEEQDTEG 111
              Y+ QL+ S +    NI        SL D E   +    + P RC A    C+ E D E 
Sbjct:    62 QYDKQLIESSKLKGFNINGGGLDIYSLDDFEFDNDEWSKSCP-RCTAHNSICLTETDLEK 120

Query:   112 DSSDDN----ILIACDTCSLLLEI 131
              + D +    I++ C++CSL +++
Sbjct:   121 GTPDKDGGFDIIVQCNSCSLWIQV 144

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017183 "peptidyl-diphthamide biosynthetic process from peptidyl-histidine" evidence=IEA

GO:0008198 "ferrous iron binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VBY7	DJC24_BOVIN	No assigned EC number	0.3	0.9328	0.8445	yes	N/A
Q9UUG3	DPH4_SCHPO	No assigned EC number	0.3260	0.9179	0.8848	yes	N/A
Q752D7	DPH4_ASHGO	No assigned EC number	0.2569	0.9701	0.8333	yes	N/A
Q6P3W2	DJC24_HUMAN	No assigned EC number	0.3	0.9328	0.8445	yes	N/A
Q54CI5	DPH4_DICDI	No assigned EC number	0.3205	0.9328	0.7352	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	134
pfam00226	63	pfam00226, DnaJ, DnaJ domain	1e-20
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	9e-18
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	4e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	3e-15
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	3e-14
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	1e-13
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-13
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	4e-13
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	7e-13
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	3e-12
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	8e-12
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	1e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-11
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	2e-11
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	2e-11
pfam05207	55	pfam05207, zf-CSL, CSL zinc finger	2e-11
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	5e-11
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	6e-11
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-10
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-10
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	9e-10
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	2e-09
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	3e-09
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	4e-09
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	8e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	2e-08
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-08
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	4e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	5e-08
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	6e-08
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	6e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	7e-08
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-07
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	1e-06
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	2e-06
COG5216	67	COG5216, COG5216, Uncharacterized conserved protei	5e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-05
PTZ00100	116	PTZ00100, PTZ00100, DnaJ chaperone protein; Provis	1e-04
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.001
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.001

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 78.3 bits (194), Expect = 1e-20
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 3/62 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERK 58
          +++EIL    +++ EEIK+ Y+ L LKYHPDKN      +E F +INEA+ +L D ++R 
Sbjct: 1  DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60

Query: 59 LY 60
          +Y
Sbjct: 61 IY 62

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 71.0 bits (175), Expect = 9e-18
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 3/55 (5%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH---QEMFLKINEAWNILKD 53
          ++++IL    +++ EEIK+ Y+ L LKYHPDKN +    +E F +INEA+ +L D
Sbjct: 1  DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 67.3 bits (165), Expect = 4e-16
 Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ----EMFLKINEAWNILKDEK 55
           +++EIL    +++L+EIK+ Y+ L LKYHPDKN   +    E F +INEA+ +L D +
Sbjct: 1  TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 31/62 (50%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++EIL  + N+T EEIK+ Y+ L  KYHPD  KN E +E F +INEA+ +L D ++RKL
Sbjct: 4  DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKL 63

Query: 60 YE 61
          Y+
Sbjct: 64 YD 65

Length = 382

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 66.4 bits (161), Expect = 3e-14
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----EHQEMFLKINEAWNILKDEKE 56
          ++++EIL    N++LEEIK+ Y+ L LKYHPD+N       +E F +INEA+ IL D + 
Sbjct: 6  LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPER 65

Query: 57 RKLY 60
          R  Y
Sbjct: 66 RAEY 69

Length = 237

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 65.7 bits (161), Expect = 1e-13
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
           +++EIL  + +++ EEIK+ Y+ L  KYHPD+N    E +E F +INEA+ +L D ++R
Sbjct: 4  RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKR 63

Query: 58 KLY 60
            Y
Sbjct: 64 AAY 66

Length = 371

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 3/64 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
          M+++ IL  +  ++ EEIK+ Y+ L +KYHPDKN    E ++ F +++EA+ +L D ++R
Sbjct: 1  MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKR 60

Query: 58 KLYE 61
          + Y+
Sbjct: 61 ESYD 64

Length = 391

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 24/63 (38%), Positives = 43/63 (68%), Gaps = 2/63 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++ IL    N++ +EIK+ +K L  KYHPD  K+   +E F +INEA+ +L D ++R++
Sbjct: 5  DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRI 64

Query: 60 YES 62
          Y++
Sbjct: 65 YDT 67

Length = 291

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 63.4 bits (155), Expect = 7e-13
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          +EIL  + +++ EEIK+ Y+ L  KYHPD+N + +  E F +INEA+ +L D ++R  Y
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQY 61

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERK 58
          M+++E+L  +  ++ +EIK  Y+ L LKYHPD+N E    E F +INEA+ +L D ++R 
Sbjct: 2  MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61

Query: 59 LYE 61
           Y+
Sbjct: 62 HYD 64

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 28/63 (44%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++EIL  + N+T EEIK+ Y+ L  KYHPD N    E ++ F +INEA+ IL D ++R 
Sbjct: 6  DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65

Query: 59 LYE 61
           Y+
Sbjct: 66 QYD 68

Length = 386

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 60.5 bits (148), Expect = 8e-12
 Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
          +E+L  + N++ +EIK+ Y+ L +KYHPD+N    E +E F +I EA+ +L D ++R  Y
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAY 66

Length = 371

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 3/64 (4%)

Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKER 57
          ++++EIL    +S  E IK++Y+ L LKYHPD+N+   E +E F  INEA+ +L DEK+R
Sbjct: 3  LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKR 62

Query: 58 KLYE 61
           LY+
Sbjct: 63 ALYD 66

Length = 369

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L  + ++  +EIK+ Y+ L LKYHPDKN    E +E F ++NEA+ +L ++ +R+
Sbjct: 4  DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63

Query: 59 LYE 61
           Y+
Sbjct: 64 RYD 66

Length = 397

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 59.9 bits (145), Expect = 2e-11
 Identities = 25/62 (40%), Positives = 45/62 (72%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKL 59
          +++EIL  + ++++E+IK+ Y+ L +KYHPDKN E   +E F +I+EA+ +L D ++R  
Sbjct: 6  DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQ 65

Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

Length = 377

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 24/63 (38%), Positives = 44/63 (69%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++++L    ++T  EIK+ Y+ L  +YHPD N   ++ +E F +I+EA+++L DEK+RK
Sbjct: 10 DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69

Query: 59 LYE 61
           Y+
Sbjct: 70 EYD 72

Length = 389

>gnl|CDD|191232 pfam05207, zf-CSL, CSL zinc finger

 Score = 54.9 bits (133), Expect = 2e-11
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 78  VSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
           V L D E   E   F YPCRCG EF I E+D E    +  +++ C +CSL +++
Sbjct: 3   VELEDFEFDEEEGSFYYPCRCGDEFEITEEDLE----EGEVVVQCPSCSLWIKV 52

This is a zinc binding motif which contains four cysteine residues which chelate zinc. This domain is often found associated with a pfam00226 domain. This domain is named after the conserved motif of the final cysteine. Length = 55

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH----QEMFLKINEAWNILKDEKER 57
          +++EIL  + N+T EEIK  YK L+ ++HPD++ E+    ++ F +I EA+ +L D ++R
Sbjct: 5  DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKR 64

Query: 58 KLYE 61
           +Y+
Sbjct: 65 AMYD 68

Length = 369

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 23/58 (39%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          +E+LN + + T  EIK+ Y+ L +K+HPDK  +  E F +I+ A+ +L D ++RK+Y+
Sbjct: 31 YEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          ++++IL  + ++  EEIK  Y+ L +KYHPDKN    E +E F +  EA+ IL+D K+R+
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 59 LYE 61
           Y+
Sbjct: 65 AYD 67

Length = 372

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 25/62 (40%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKL 59
          ++EIL    +++ EEIK++Y+ L +KYHPD+N    E +E+F +  EA+ +L D K+R +
Sbjct: 6  YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGI 65

Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

Length = 366

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 54.8 bits (132), Expect = 9e-10
 Identities = 23/63 (36%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L     ++ +EIK+ ++ L +KYHPDKN    E +E F +INEA+ +L D +++ 
Sbjct: 5  DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64

Query: 59 LYE 61
           Y+
Sbjct: 65 QYD 67

Length = 380

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          +++E+L  + N+  +EIK+ Y+ L  KYHPD + E   +E F +I+EA+ +L D+++R+ 
Sbjct: 6  DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQR 65

Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

Length = 378

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 53.3 bits (128), Expect = 3e-09
 Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L  +  +T++EIK+ Y+   ++YHPDKN    E +E F +  EA+++L D  +R 
Sbjct: 6  DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65

Query: 59 LYE 61
           Y+
Sbjct: 66 RYD 68

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 23/62 (37%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          +++E+L  + +++ +EIK+ Y+ L  KYHPD N E    E F +I+EA+ +L D+++R  
Sbjct: 5  DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQ 64

Query: 60 YE 61
          Y+
Sbjct: 65 YD 66

Length = 376

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 51.9 bits (124), Expect = 8e-09
 Identities = 21/64 (32%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER 57
          ++++IL  + N++ E+IK+ ++ L  K+HPD +    +E +E F +I+EA+ +L D ++R
Sbjct: 4  DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKR 63

Query: 58 KLYE 61
          + Y+
Sbjct: 64 RQYD 67

Length = 365

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 21/63 (33%), Positives = 43/63 (68%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++E+L  + +++ +EIK+ Y+ L L+YHPD+N    E ++ F +  EA+ +L+D ++R 
Sbjct: 5  DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64

Query: 59 LYE 61
           Y+
Sbjct: 65 RYD 67

Length = 373

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++ I+       L+ IK  Y+ L  KYHPD  K  + +  F ++ EAW +L DE+ R  
Sbjct: 5  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 64

Query: 60 YESQLLSQ------QQTHMNIYKSVSLSD 82
          Y+     +      +Q      +S +  D
Sbjct: 65 YDQLWQHRNDPQFNRQFQHGDGQSFNAED 93

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKLYE 61
          +EIL  + ++  +E+K  Y+ L  KYHPD N E   ++ F +IN A+ +L D + R  Y+
Sbjct: 6  YEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYD 65

Length = 374

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 12 NSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYE 61
          +++ EEIK+ Y+ L  + HPD N      +E F  ++EA ++L D  +RK Y+
Sbjct: 20 DASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYD 72

Length = 392

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (118), Expect = 6e-08
 Identities = 19/62 (30%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          +++E+L  + N++++E+K+ Y+ L  KYHPD N     ++ F ++ EA++ L D +++  
Sbjct: 5  DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAH 64

Query: 60 YE 61
          Y+
Sbjct: 65 YD 66

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKLYE 61
          ++ L  + +++ +EIK+ Y+ L  KYHPD N E   +E + ++ EA+  L D ++R  Y+
Sbjct: 7  YDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKL 59
          +++ +L  + N++  EIK  Y+ L  + HPD N   E QE F +I+ A+ +L D ++R++
Sbjct: 4  DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRI 63

Query: 60 YE 61
           +
Sbjct: 64 VD 65

Length = 378

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 20/62 (32%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++E+L  +  ++ +EI++ Y+ L  +YHPD  K+ +  +  ++INEA ++L D+ +RK 
Sbjct: 5  DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQ 64

Query: 60 YE 61
          Y+
Sbjct: 65 YD 66

Length = 372

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 22/63 (34%), Positives = 42/63 (66%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE---MFLKINEAWNILKDEKERK 58
          +++EIL  +  ++ +EIK+ Y+ + +KYHPDKN  ++E   +F +  EA+ +L D+ +R 
Sbjct: 4  DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63

Query: 59 LYE 61
           Y+
Sbjct: 64 QYD 66

Length = 365

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 8/65 (12%)

Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEK 55
           +EIL  + +++  +IK+ Y+ L +K+HPDK         SE++E +  I +A+ +L D+K
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 56  ERKLY 60
            R+ Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          ++++IL  +  ++  ++K+ Y  L  +YHPD       ++ F +IN A+++LKDE++R  
Sbjct: 4  DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAA 63

Query: 60 YE 61
          Y+
Sbjct: 64 YD 65

Length = 372

>gnl|CDD|227541 COG5216, COG5216, Uncharacterized conserved protein [Function unknown]

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
           M+ Y  + + D     E + FTYPC CG  F I  +D      +  ++  C +CSL++ +
Sbjct: 1   MSFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLR----NGEVVARCPSCSLIVCV 56

Length = 67

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 42.1 bits (98), Expect = 2e-05
 Identities = 21/62 (33%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS--EHQEMFLKINEAWNILKDEKERKL 59
          +++E+L  + ++  +EIK+ ++ L  KYHPD+N   +   +F +INEA ++L + K+R  
Sbjct: 3  DYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRAN 62

Query: 60 YE 61
          Y+
Sbjct: 63 YD 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNIL 51
           ++ILN +  ++ E I+E +K L+L+ HPD N     +  K+NEA ++L
Sbjct: 68  YKILNISPTASKERIREAHKQLMLRNHPD-NGGSTYIASKVNEAKDLL 114

Length = 116

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 3   HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM--FLKINEAWNILKDEKERKLY 60
            ++IL   VN+ ++EI E Y  L   Y+P K S ++    F KINEA+ IL D  ++K+Y
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMY 634

Length = 1136

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 16  EEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYES 62
            +I + +K  + KYHPDK     N    E F  I +A  +L D K R  Y+S
Sbjct: 61  PQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112

Length = 379

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	134
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.97
KOG0712|consensus	337		99.95
KOG0713|consensus	336		99.92
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.92
PRK14296	372	chaperone protein DnaJ; Provisional	99.92
PRK14288	369	chaperone protein DnaJ; Provisional	99.91
PRK14286	372	chaperone protein DnaJ; Provisional	99.9
PRK14287	371	chaperone protein DnaJ; Provisional	99.9
PRK14298	377	chaperone protein DnaJ; Provisional	99.9
PRK14276	380	chaperone protein DnaJ; Provisional	99.89
PRK14285	365	chaperone protein DnaJ; Provisional	99.89
PRK14280	376	chaperone protein DnaJ; Provisional	99.89
PRK14278	378	chaperone protein DnaJ; Provisional	99.89
PRK14282	369	chaperone protein DnaJ; Provisional	99.88
PRK14284	391	chaperone protein DnaJ; Provisional	99.88
PRK14277	386	chaperone protein DnaJ; Provisional	99.88
PRK14297	380	chaperone protein DnaJ; Provisional	99.88
PRK14283	378	chaperone protein DnaJ; Provisional	99.88
PRK10767	371	chaperone protein DnaJ; Provisional	99.88
PRK14301	373	chaperone protein DnaJ; Provisional	99.88
PRK14294	366	chaperone protein DnaJ; Provisional	99.88
PRK14295	389	chaperone protein DnaJ; Provisional	99.87
PRK14291	382	chaperone protein DnaJ; Provisional	99.86
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.86
PRK14279	392	chaperone protein DnaJ; Provisional	99.86
PRK14292	371	chaperone protein DnaJ; Provisional	99.85
PRK14300	372	chaperone protein DnaJ; Provisional	99.85
PRK14289	386	chaperone protein DnaJ; Provisional	99.85
PRK14290	365	chaperone protein DnaJ; Provisional	99.84
PRK14293	374	chaperone protein DnaJ; Provisional	99.84
KOG0716|consensus	279		99.84
KOG0717|consensus	508		99.84
PRK14299	291	chaperone protein DnaJ; Provisional	99.83
KOG0715|consensus	288		99.83
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.83
PRK14281	397	chaperone protein DnaJ; Provisional	99.81
KOG0718|consensus	546		99.79
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.79
KOG0691|consensus	296		99.78
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.77
KOG0719|consensus	264		99.75
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.74
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.73
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.71
KOG0721|consensus	230		99.71
KOG0720|consensus	490		99.7
PRK05014	171	hscB co-chaperone HscB; Provisional	99.69
PHA03102	153	Small T antigen; Reviewed	99.69
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.69
KOG2923|consensus	67		99.68
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	99.67
PRK01356	166	hscB co-chaperone HscB; Provisional	99.66
PRK00294	173	hscB co-chaperone HscB; Provisional	99.65
KOG0624|consensus	504		99.64
PRK03578	176	hscB co-chaperone HscB; Provisional	99.64
KOG0550|consensus	486		99.57
COG5216	67	Uncharacterized conserved protein [Function unknow	99.54
KOG0722|consensus	329		99.52
PTZ00100	116	DnaJ chaperone protein; Provisional	99.47
KOG0714|consensus	306		99.44
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.44
PHA02624	647	large T antigen; Provisional	99.42
PRK01773	173	hscB co-chaperone HscB; Provisional	99.41
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.4
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.26
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.11
KOG1150|consensus	250		99.08
KOG0568|consensus	342		98.69
KOG1789|consensus	2235		98.56
KOG0723|consensus	112		98.46
KOG3192|consensus	168		98.09
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.54
KOG0431|consensus	453		97.48
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.22
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	96.49
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.81
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	95.8
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	94.04
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	92.56
PF13446	62	RPT: A repeated domain in UCH-protein	92.42
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	92.29
KOG0724|consensus	335		92.02
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	91.13
PF05180	66	zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc	89.94
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	89.64
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	87.83
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	87.17
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	85.98
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	85.41
PF05280	175	FlhC: Flagellar transcriptional activator (FlhC);	85.22
COG5552	88	Uncharacterized conserved protein [Function unknow	81.61
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	81.07
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	80.66

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.4e-31  Score=207.65  Aligned_cols=127  Identities=26%  Similarity=0.357  Sum_probs=95.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhccc--c--
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHM--N--   73 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~--~--   73 (134)
                      +|||+||||+++||.+|||+|||+||++||||+   ++.|+++|++|++||+|||||++|+.||+++......++  .  
T Consensus         4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~g   83 (371)
T COG0484           4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGFG   83 (371)
T ss_pred             cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCCC
Confidence            699999999999999999999999999999999   468999999999999999999999999999998865321  1  


Q ss_pred             ---cc-cccccccccccCCce--eeeeeCCCCC----eEEEecccccCCCCCCce---eEeCCCCcc
Q psy7548          74 ---IY-KSVSLSDMEHKGESQ--MFTYPCRCGA----EFCIEEQDTEGDSSDDNI---LIACDTCSL  127 (134)
Q Consensus        74 ---~~-~~~~~~~~~~~~~~~--~~~~~crcG~----~~~v~~~~~~~g~~~~~~---~v~C~~CSl  127 (134)
                         +. ...++++.+|+++..  .-....+-|.    ...|++++++.|....+.   .+.|++|+-
T Consensus        84 ~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~G  150 (371)
T COG0484          84 FGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHG  150 (371)
T ss_pred             cCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCC
Confidence               11 123333444432211  1111223443    677899999999766543   777887763

>KOG0712|consensus

Probab=99.95  E-value=6e-28  Score=188.60  Aligned_cols=124  Identities=26%  Similarity=0.329  Sum_probs=96.6

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcccccccccccc
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSLS   81 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~~~~~~   81 (134)
                      .+|+||||+++||.+|||+|||+|+++|||||++.+.++|++|.+||+|||||++|+.||+++++....++.......+.
T Consensus         5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~~~f~   84 (337)
T KOG0712|consen    5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGFGGFS   84 (337)
T ss_pred             ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCCccHH
Confidence            68999999999999999999999999999999999999999999999999999999999999998886553333333344


Q ss_pred             cccccCCceeeeeeCCCC----CeEEEecccccCCCCCCce---eEeCCCCcc
Q psy7548          82 DMEHKGESQMFTYPCRCG----AEFCIEEQDTEGDSSDDNI---LIACDTCSL  127 (134)
Q Consensus        82 ~~~~~~~~~~~~~~crcG----~~~~v~~~~~~~g~~~~~~---~v~C~~CSl  127 (134)
                      +|+ +.+......+=| |    ....|++++++.|.+.+..   .+.|+.|+-
T Consensus        85 ~~F-~~g~~~~~~~~r-g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~G  135 (337)
T KOG0712|consen   85 QFF-GFGGNGGRGRQR-GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSG  135 (337)
T ss_pred             Hhc-cCCCcCcccccc-CCCceEEEEEEHHHhhcCCccceecccCccCCcCCC
Confidence            443 322111111113 4    4889999999999666543   777777763

>KOG0713|consensus

Probab=99.92  E-value=1.4e-25  Score=173.98  Aligned_cols=69  Identities=36%  Similarity=0.622  Sum_probs=66.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      ||||+||||+++||..|||+|||+||+++||||   +|.|.+.|++|+.||+|||||++|+.||..++....
T Consensus        16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            799999999999999999999999999999999   789999999999999999999999999999987765

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.92  E-value=1.6e-25  Score=181.10  Aligned_cols=123  Identities=24%  Similarity=0.372  Sum_probs=87.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhccccccccccc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSVSL   80 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~~~~~   80 (134)
                      +|||+||||+++||.+|||+|||+||++|||||++. .++|++|++||++|+||.+|+.||+++...........+..++
T Consensus        28 ~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~~~~d~~d~  106 (421)
T PTZ00037         28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADASDL  106 (421)
T ss_pred             hhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCCCCcchhhh
Confidence            489999999999999999999999999999999653 5899999999999999999999999887643211111122233


Q ss_pred             ccccccCCceeeeeeCCCCC----eEEEecccccCCCCCCce---eEeCCCCc
Q psy7548          81 SDMEHKGESQMFTYPCRCGA----EFCIEEQDTEGDSSDDNI---LIACDTCS  126 (134)
Q Consensus        81 ~~~~~~~~~~~~~~~crcG~----~~~v~~~~~~~g~~~~~~---~v~C~~CS  126 (134)
                      ++.+|+++...  ..-+-|.    ...|++++++.|....+.   .+.|+.|+
T Consensus       107 f~~~Fggg~~~--~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~  157 (421)
T PTZ00037        107 FDLIFGGGRKP--GGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCE  157 (421)
T ss_pred             HHHhhcccccc--ccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccC
Confidence            33344321100  1112232    567889999999766543   45666554

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.92  E-value=4.9e-25  Score=176.11  Aligned_cols=67  Identities=28%  Similarity=0.544  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+||++||||+  .+.+.++|++|++||+||+||++|+.||+++...
T Consensus         4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~   72 (372)
T PRK14296          4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA   72 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence            489999999999999999999999999999999  4668899999999999999999999999988753

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.91  E-value=9.6e-25  Score=174.30  Aligned_cols=67  Identities=45%  Similarity=0.718  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+||++||||++   +.++++|++|++||+||+||++|+.||+++...
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~   72 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG   72 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence            4999999999999999999999999999999993   568899999999999999999999999998753

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=3.2e-24  Score=171.43  Aligned_cols=67  Identities=39%  Similarity=0.639  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||+   .+.+.++|++|++||+||+||.+|+.||+++...
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            489999999999999999999999999999999   3568899999999999999999999999988754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=3.3e-24  Score=171.34  Aligned_cols=126  Identities=22%  Similarity=0.364  Sum_probs=87.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc--c-c--
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH--M-N--   73 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~--~-~--   73 (134)
                      +|||+||||+++||.+|||+|||+|+++||||++  +.++++|++|++||++|+||.+|+.||+++.......  + .  
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~~~   83 (371)
T PRK14287          4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGGAG   83 (371)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCCCc
Confidence            4899999999999999999999999999999993  6688999999999999999999999999987543211  0 0  


Q ss_pred             -cccccccccccccCCceeee-eeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7548          74 -IYKSVSLSDMEHKGESQMFT-YPCRCG----AEFCIEEQDTEGDSSDDNI---LIACDTCS  126 (134)
Q Consensus        74 -~~~~~~~~~~~~~~~~~~~~-~~crcG----~~~~v~~~~~~~g~~~~~~---~v~C~~CS  126 (134)
                       +....++++.+|++++.... ...+-|    -...|++++++.|....+.   .+.|+.|.
T Consensus        84 ~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~  145 (371)
T PRK14287         84 DFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCH  145 (371)
T ss_pred             cccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCC
Confidence             01111233333432111000 011223    2677899999999655443   45666664

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.90  E-value=3.1e-24  Score=171.80  Aligned_cols=126  Identities=26%  Similarity=0.407  Sum_probs=87.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhccc------
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHM------   72 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~------   72 (134)
                      +|||+||||+++||.+|||+|||+||++||||+  .+.+.++|++|++||++|+||.+|+.||+++........      
T Consensus         5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~~   84 (377)
T PRK14298          5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIF   84 (377)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccccc
Confidence            489999999999999999999999999999999  366889999999999999999999999998865322110      


Q ss_pred             ---ccccccccccccccCCceeeeeeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7548          73 ---NIYKSVSLSDMEHKGESQMFTYPCRCG----AEFCIEEQDTEGDSSDDNI---LIACDTCS  126 (134)
Q Consensus        73 ---~~~~~~~~~~~~~~~~~~~~~~~crcG----~~~~v~~~~~~~g~~~~~~---~v~C~~CS  126 (134)
                         .+....++++.+|++++.......+-|    -...|++++++.|....+.   .+.|+.|.
T Consensus        85 ~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~  148 (377)
T PRK14298         85 RGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCS  148 (377)
T ss_pred             ccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCC
Confidence               000111223333332111000112223    2678899999999666543   45555553

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=9.9e-24  Score=169.04  Aligned_cols=67  Identities=27%  Similarity=0.509  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||+  .+.+.++|++|++||++|+||.+|+.||+++...
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~   72 (380)
T PRK14276          4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG   72 (380)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence            489999999999999999999999999999999  4568899999999999999999999999988753

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=1.4e-23  Score=167.41  Aligned_cols=67  Identities=33%  Similarity=0.617  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||+   .+.+.++|++|++||++|+||.+|..||+++...
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~   72 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA   72 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence            489999999999999999999999999999999   3567899999999999999999999999988753

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=2.4e-23  Score=166.63  Aligned_cols=126  Identities=22%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc-c--c--
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH-M--N--   73 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~-~--~--   73 (134)
                      +|||+||||+++|+.++||+|||+|+++||||+  .+.+.++|++|++||++|+||.+|+.||+++....... +  .  
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~~   83 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGFG   83 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCCC
Confidence            489999999999999999999999999999999  46688999999999999999999999999887543211 0  0  


Q ss_pred             ---cc---cccccccccccCCcee-eeeeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7548          74 ---IY---KSVSLSDMEHKGESQM-FTYPCRCG----AEFCIEEQDTEGDSSDDNI---LIACDTCS  126 (134)
Q Consensus        74 ---~~---~~~~~~~~~~~~~~~~-~~~~crcG----~~~~v~~~~~~~g~~~~~~---~v~C~~CS  126 (134)
                         +.   ...++++.+|++++.. .....+-|    -...|++++++.|....+.   .+.|+.|+
T Consensus        84 ~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~  150 (376)
T PRK14280         84 GGDFGGGFGFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCH  150 (376)
T ss_pred             CCCccccccchhhHHHHhCCccccCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCC
Confidence               00   0012222233321110 00111223    2678899999999766543   56666664

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.89  E-value=2.3e-23  Score=166.81  Aligned_cols=126  Identities=20%  Similarity=0.297  Sum_probs=85.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc---cccc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH---MNIY   75 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~---~~~~   75 (134)
                      +|||+||||+++||.++||+|||+|+++||||+  .+.+.++|++|++||++|+||.+|+.||+++.......   +.+.
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~~   82 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGFG   82 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCCC
Confidence            489999999999999999999999999999999  45578899999999999999999999999886422110   0111


Q ss_pred             ----cccccccccccCCcee--eeeeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7548          76 ----KSVSLSDMEHKGESQM--FTYPCRCG----AEFCIEEQDTEGDSSDDNI---LIACDTCS  126 (134)
Q Consensus        76 ----~~~~~~~~~~~~~~~~--~~~~crcG----~~~~v~~~~~~~g~~~~~~---~v~C~~CS  126 (134)
                          ...++++.+|++++..  .....+-|    -...|++++++.|....+.   .+.|+.|+
T Consensus        83 ~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~  146 (378)
T PRK14278         83 GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCH  146 (378)
T ss_pred             cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCc
Confidence                1112222223321100  00011223    2578899999999666543   45555553

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=3.7e-23  Score=165.20  Aligned_cols=67  Identities=36%  Similarity=0.634  Sum_probs=62.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||++    +.+.++|++|++||++|+||.+|+.||+++...
T Consensus         4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            4999999999999999999999999999999993    457889999999999999999999999988654

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=7.5e-23  Score=164.50  Aligned_cols=67  Identities=34%  Similarity=0.645  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|+++||||+   .+.+.++|++|++||++|+||.+|+.||+++...
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            699999999999999999999999999999999   3568899999999999999999999999988753

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=7.5e-23  Score=164.26  Aligned_cols=67  Identities=40%  Similarity=0.631  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|+++||||+   .+.++++|++|++||++|+||.+|+.||+++...
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            489999999999999999999999999999999   3567889999999999999999999999988653

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=4.4e-23  Score=165.33  Aligned_cols=67  Identities=34%  Similarity=0.631  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|+++||||+   .+.++++|++|++||++|+||.+|+.||+++...
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            489999999999999999999999999999999   3568899999999999999999999999988754

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1.4e-22  Score=162.39  Aligned_cols=67  Identities=33%  Similarity=0.581  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||++  +.+.++|++|++||++|+||.+|+.||+++...
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            4899999999999999999999999999999994  678899999999999999999999999988653

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=1e-22  Score=162.70  Aligned_cols=67  Identities=34%  Similarity=0.656  Sum_probs=62.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||+++...
T Consensus         4 ~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            489999999999999999999999999999999   3567899999999999999999999999988654

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=5.2e-23  Score=164.55  Aligned_cols=67  Identities=31%  Similarity=0.614  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.++++|++|++||+||+||.+|+.||+++...
T Consensus         4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            489999999999999999999999999999999   3567889999999999999999999999988754

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=9.5e-23  Score=162.69  Aligned_cols=67  Identities=36%  Similarity=0.668  Sum_probs=62.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||+   .+.+.++|++|++||+||+||.+|+.||+++...
T Consensus         4 ~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            589999999999999999999999999999999   3567899999999999999999999999998754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=1.7e-22  Score=162.33  Aligned_cols=62  Identities=37%  Similarity=0.695  Sum_probs=59.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYES   62 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~   62 (134)
                      +|||+||||+++||.++||+|||+|+++||||+   .+.++++|++|++||++|+||.+|+.||+
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            489999999999999999999999999999999   35688999999999999999999999998

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=2.2e-22  Score=161.37  Aligned_cols=67  Identities=45%  Similarity=0.682  Sum_probs=62.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|+++||||++  +.+.++|++|++||++|+||.+|+.||+++...
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            5899999999999999999999999999999994  568899999999999999999999999988754

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.86  E-value=3.2e-22  Score=159.00  Aligned_cols=66  Identities=39%  Similarity=0.663  Sum_probs=62.0

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~--~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      |||+||||+++|+.++||+|||+|++++|||++  +.+.++|++|++||++|+||.+|..||.++...
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            799999999999999999999999999999994  567899999999999999999999999988754

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.86  E-value=5.6e-22  Score=159.51  Aligned_cols=65  Identities=29%  Similarity=0.529  Sum_probs=61.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||+||||+++|+.+|||+|||+|+++||||+   .+.+.++|++|++||+||+||++|+.||+++.
T Consensus         9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            599999999999999999999999999999999   34688999999999999999999999999875

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=7.9e-22  Score=157.62  Aligned_cols=126  Identities=25%  Similarity=0.376  Sum_probs=87.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhc--c-cccc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT--H-MNIY   75 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~--~-~~~~   75 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|+.|++||++|+||.+|+.||+++......  . +++.
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~~   81 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPFG   81 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCcccC
Confidence            699999999999999999999999999999999  4568899999999999999999999999988653211  0 0100


Q ss_pred             c-cc---ccccccccCCc--eeee-eeCCCC----CeEEEecccccCCCCCCce---eEeCCCCc
Q psy7548          76 K-SV---SLSDMEHKGES--QMFT-YPCRCG----AEFCIEEQDTEGDSSDDNI---LIACDTCS  126 (134)
Q Consensus        76 ~-~~---~~~~~~~~~~~--~~~~-~~crcG----~~~~v~~~~~~~g~~~~~~---~v~C~~CS  126 (134)
                      . .+   ++++.+|+...  .... ...+-|    -...+++++++.|....+.   .+.|+.|.
T Consensus        82 ~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~  146 (371)
T PRK14292         82 GMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCH  146 (371)
T ss_pred             ccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCc
Confidence            0 01   22222232210  0000 111223    2567789999999666543   57787774

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.2e-21  Score=156.75  Aligned_cols=67  Identities=28%  Similarity=0.553  Sum_probs=62.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|+++||||+  .+.++++|++|++||++|+|+.+|+.||+++...
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            589999999999999999999999999999999  3557889999999999999999999999987653

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=2.9e-21  Score=155.09  Aligned_cols=67  Identities=31%  Similarity=0.594  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||+++...
T Consensus         5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~   74 (386)
T PRK14289          5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG   74 (386)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence            489999999999999999999999999999999   3568899999999999999999999999988753

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=1.7e-21  Score=155.45  Aligned_cols=67  Identities=31%  Similarity=0.603  Sum_probs=62.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.+|||+|||+|++++|||++    ..+.++|++|++||++|+||.+|+.||.++...
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~   73 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD   73 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence            4899999999999999999999999999999993    257899999999999999999999999988653

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=3.1e-21  Score=154.41  Aligned_cols=67  Identities=30%  Similarity=0.536  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|+.|++||++|+||.+|+.||.++...
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g   71 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG   71 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence            489999999999999999999999999999999  4568899999999999999999999999988653

>KOG0716|consensus

Probab=99.84  E-value=1.9e-21  Score=147.09  Aligned_cols=70  Identities=36%  Similarity=0.608  Sum_probs=65.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      +|+|+|||++++|+.++||++||+|++++|||+   +|++..+|++||+||+||+||.+|..||.++......
T Consensus        31 ~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l  103 (279)
T KOG0716|consen   31 LDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL  103 (279)
T ss_pred             hHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence            478999999999999999999999999999999   5779999999999999999999999999998876543

>KOG0717|consensus

Probab=99.84  E-value=1.8e-21  Score=155.86  Aligned_cols=71  Identities=34%  Similarity=0.558  Sum_probs=65.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      |.||+||||..+|+..+||++||+|||+|||||    -+.+.++|+.|+.||+|||||..|++||.+..+.....
T Consensus         8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~   82 (508)
T KOG0717|consen    8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK   82 (508)
T ss_pred             hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence            579999999999999999999999999999999    45789999999999999999999999999999877544

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=5.5e-21  Score=148.45  Aligned_cols=66  Identities=35%  Similarity=0.626  Sum_probs=62.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||+++..
T Consensus         4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            489999999999999999999999999999999  467889999999999999999999999998875

>KOG0715|consensus

Probab=99.83  E-value=1.3e-20  Score=146.15  Aligned_cols=66  Identities=39%  Similarity=0.663  Sum_probs=63.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      |||+||||+++|+..|||.||++|++++|||.  .+.+.++|++|.+||++|+|+++|..||..+...
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            79999999999999999999999999999999  6689999999999999999999999999999875

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.83  E-value=1.3e-20  Score=115.29  Aligned_cols=60  Identities=45%  Similarity=0.763  Sum_probs=56.5

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CH--HHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NS--EHQEMFLKINEAWNILKDEKERKLYE   61 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~--~~~~~f~~i~~Ay~~L~d~~~R~~Yd   61 (134)
                      |||+||||+++++.++||++|+++++++|||+  ..  .+...|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999  32  37799999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=2.3e-20  Score=150.34  Aligned_cols=67  Identities=36%  Similarity=0.665  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+   .+.+.++|++|++||++|+||.+|+.||+++...
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            489999999999999999999999999999999   3567899999999999999999999999988754

>KOG0718|consensus

Probab=99.79  E-value=1.1e-19  Score=145.96  Aligned_cols=69  Identities=30%  Similarity=0.544  Sum_probs=65.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      .+||.+|||+++||.+|||+|||++++.+||||      +..|++.|+.|.+||+||+||.+|..||.++++...
T Consensus         9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            379999999999999999999999999999999      567899999999999999999999999999998775

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.79  E-value=1.6e-19  Score=141.12  Aligned_cols=65  Identities=31%  Similarity=0.619  Sum_probs=61.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            589999999999999999999999999999999  45688999999999999999999999999864

>KOG0691|consensus

Probab=99.78  E-value=3.2e-19  Score=138.14  Aligned_cols=71  Identities=31%  Similarity=0.579  Sum_probs=66.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      .|||+||||+.+||..+|++||++.++++||||   +|.+.++|+.|.+||+||+|+.+|..||..+.......
T Consensus         5 ~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    5 TDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             chHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            489999999999999999999999999999999   78899999999999999999999999999999776543

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.77  E-value=4.5e-19  Score=152.60  Aligned_cols=68  Identities=35%  Similarity=0.509  Sum_probs=63.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      ++||+||||+++||..+||+|||+||+++|||+  .+.+..+|+.|++||+||+||.+|+.||.+|..+.
T Consensus       573 ~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        573 TLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            489999999999999999999999999999999  34578899999999999999999999999988653

>KOG0719|consensus

Probab=99.75  E-value=1.1e-18  Score=129.75  Aligned_cols=67  Identities=33%  Similarity=0.597  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|+|+||||.++|+..+||+||++|++++|||+     ...+..+|+.|+.||.||+|.++|+.||..+.-.
T Consensus        14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            589999999999999999999999999999999     4568899999999999999999999999888755

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.74  E-value=2.9e-18  Score=103.38  Aligned_cols=55  Identities=47%  Similarity=0.820  Sum_probs=51.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChH
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEK   55 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~   55 (134)
                      +|||+||||+++++.++||++|+++++++|||+.    +.+.+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999999993    358889999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.73  E-value=7.9e-18  Score=99.69  Aligned_cols=52  Identities=48%  Similarity=0.818  Sum_probs=49.2

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHccC
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d   53 (134)
                      |||+||||+++++.++||++|+++++++|||+.   +.+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999993   5689999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.71  E-value=1.1e-17  Score=141.38  Aligned_cols=68  Identities=29%  Similarity=0.528  Sum_probs=63.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+  .+.+.++|+.|++||++|+||.+|+.||.++....
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            589999999999999999999999999999999  55677899999999999999999999999887543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0721|consensus

Probab=99.71  E-value=1.7e-17  Score=122.25  Aligned_cols=68  Identities=34%  Similarity=0.567  Sum_probs=63.5

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~---~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      |+|+||||+++||.+|||+|||+|++++||||.   .+.++.|..|.+||+.|+|+..|..|..++.....
T Consensus       100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp  170 (230)
T KOG0721|consen  100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP  170 (230)
T ss_pred             CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence            899999999999999999999999999999992   66788899999999999999999999999987654

>KOG0720|consensus

Probab=99.70  E-value=3.9e-18  Score=136.86  Aligned_cols=98  Identities=27%  Similarity=0.508  Sum_probs=77.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhccccccccc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYKSV   78 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~~~   78 (134)
                      +|+|.+|||+++++.++||+.||++|...||||  .+.|++.|+.|+.||++|+|+++|..||..+..+......+-+  
T Consensus       235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~~~~~~--  312 (490)
T KOG0720|consen  235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELHRQVIS--  312 (490)
T ss_pred             CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH--
Confidence            589999999999999999999999999999999  8899999999999999999999999999988877654321111  


Q ss_pred             ccccccccCCceeeeeeC-CCCC
Q psy7548          79 SLSDMEHKGESQMFTYPC-RCGA  100 (134)
Q Consensus        79 ~~~~~~~~~~~~~~~~~c-rcG~  100 (134)
                      +..+|.-...+......| +||+
T Consensus       313 ~~~~~~~~~eEA~ntI~CskC~n  335 (490)
T KOG0720|consen  313 SLNDLQKAVEEARNTIFCSKCGN  335 (490)
T ss_pred             HHHHHHHHHHHHHhheehhhhcC
Confidence            111332222223445778 6884

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.69  E-value=1.9e-17  Score=119.76  Aligned_cols=67  Identities=24%  Similarity=0.352  Sum_probs=58.7

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCC---C-H----HHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK---N-S----EHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk---~-~----~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||++|||++.  ++..+|+++|+++++++|||+   . +    .+.+.|..|++||++|+||.+|..|+..+...
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            699999999996  678999999999999999999   1 1    24668999999999999999999999776643

>PHA03102 Small T antigen; Reviewed

Probab=99.69  E-value=1.1e-17  Score=118.71  Aligned_cols=67  Identities=15%  Similarity=0.277  Sum_probs=60.5

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         2 ~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      ..|+||||+++|  |.++||+|||++++++||||++ +.++|++|++||++|+|+.+|..||.++.....
T Consensus         6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg-~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~   74 (153)
T PHA03102          6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG-DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS   74 (153)
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc-hhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence            368999999999  9999999999999999999953 467999999999999999999999998876543

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=5.2e-17  Score=118.61  Aligned_cols=64  Identities=44%  Similarity=0.735  Sum_probs=59.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CH-HHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NS-EHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~-~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      ++||+||||+++|+..+|+++||++++++|||+   .+ .+.+.|+.|++||++|+|+.+|..||..+
T Consensus         6 ~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           6 LDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            589999999999999999999999999999999   33 27899999999999999999999999874

>KOG2923|consensus

Probab=99.68  E-value=2.6e-17  Score=98.75  Aligned_cols=56  Identities=34%  Similarity=0.764  Sum_probs=53.1

Q ss_pred             cccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      +++.+.+++|+|+++.++|.+||+||+.|.|++++|..|    ..++.|++|||.|.|+.
T Consensus         3 ~ydeVeiedfe~~~e~~~y~yPCpCGDrf~It~edL~~g----e~Va~CpsCSL~I~ViY   58 (67)
T KOG2923|consen    3 FYDEVEIEDFEFDEENQTYYYPCPCGDRFQITLEDLENG----EDVARCPSCSLIIRVIY   58 (67)
T ss_pred             ccceEEeecceeccCCCeEEcCCCCCCeeeecHHHHhCC----CeeecCCCceEEEEEEe
Confidence            567889999999999999999999999999999999999    99999999999999974

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.67  E-value=4.2e-17  Score=97.20  Aligned_cols=53  Identities=45%  Similarity=0.981  Sum_probs=47.5

Q ss_pred             ccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          77 SVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      .+++++|.+++...+|.++||||+.|.|+.+++..+    ..+++|++|||||+|..
T Consensus         2 ev~l~d~~~~~~~~~~~y~CRCG~~f~i~e~~l~~~----~~iv~C~sCSL~I~V~~   54 (55)
T PF05207_consen    2 EVSLDDMEFDEEEGVYSYPCRCGGEFEISEEDLEEG----EVIVQCDSCSLWIRVNY   54 (55)
T ss_dssp             EEETTTSEEETTTTEEEEEETTSSEEEEEHHHHHCT------EEEETTTTEEEEEE-
T ss_pred             eEEhhhceecCCCCEEEEcCCCCCEEEEcchhccCc----CEEEECCCCccEEEEEe
Confidence            468899999998899999999999999999999999    89999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.66  E-value=1.9e-16  Score=114.01  Aligned_cols=66  Identities=29%  Similarity=0.460  Sum_probs=57.4

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||++|||++.  ++..+|+++|+++++++|||+.      ..+...+..|++||+||+||.+|+.|+..+..
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            489999999997  7899999999999999999992      12234578999999999999999999887754

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.65  E-value=1.6e-16  Score=115.06  Aligned_cols=86  Identities=22%  Similarity=0.332  Sum_probs=66.2

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCC---C-----HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhc
Q psy7548           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK---N-----SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQT   70 (134)
Q Consensus         1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk---~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~   70 (134)
                      +|||++|||++.  .+..+|+++|+++++++|||+   .     ..+...+..|++||++|+||.+|..|+..+......
T Consensus         4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~   83 (173)
T PRK00294          4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGHEVP   83 (173)
T ss_pred             CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCCCCC
Confidence            589999999998  567999999999999999999   1     225677999999999999999999999887754322


Q ss_pred             c-cc-ccccccccccccc
Q psy7548          71 H-MN-IYKSVSLSDMEHK   86 (134)
Q Consensus        71 ~-~~-~~~~~~~~~~~~~   86 (134)
                      . .. ....+.+..|++.
T Consensus        84 ~~~~~~d~~fLme~me~r  101 (173)
T PRK00294         84 LEVTVHDPEFLLQQMQLR  101 (173)
T ss_pred             cccCCCCHHHHHHHHHHH
Confidence            1 11 1233444555554

>KOG0624|consensus

Probab=99.64  E-value=1.5e-16  Score=125.16  Aligned_cols=67  Identities=25%  Similarity=0.503  Sum_probs=61.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      ||||+||||.++|+..||.+|||+++.+||||-      +..++++|..|..|-+||+||++|+.+|..-..-
T Consensus       394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPL  466 (504)
T KOG0624|consen  394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPL  466 (504)
T ss_pred             chHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCC
Confidence            699999999999999999999999999999998      4568999999999999999999999999765543

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.64  E-value=1.8e-16  Score=115.11  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=58.0

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCC---CHH-----HHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK---NSE-----HQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk---~~~-----~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||++.  ++..+|+++|+++++++|||+   .+.     +.+.+..||+||++|+||.+|..|...+....
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~   83 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVD   83 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCC
Confidence            589999999996  578999999999999999999   222     33446899999999999999999998776443

>KOG0550|consensus

Probab=99.57  E-value=2.3e-15  Score=120.13  Aligned_cols=83  Identities=27%  Similarity=0.393  Sum_probs=70.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---C-HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhccccccc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---N-SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMNIYK   76 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~~~~   76 (134)
                      ++||.||||..+|+..+||+|||++++.+|||+   + .+++.+|++|.+||.+|+||.+|..||.........+++  .
T Consensus       373 kd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~~--a  450 (486)
T KOG0550|consen  373 KDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSGG--A  450 (486)
T ss_pred             hhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCCC--c
Confidence            589999999999999999999999999999999   3 678999999999999999999999999877665544333  4


Q ss_pred             ccccccccc
Q psy7548          77 SVSLSDMEH   85 (134)
Q Consensus        77 ~~~~~~~~~   85 (134)
                      .+++++++-
T Consensus       451 ~~dp~~~~~  459 (486)
T KOG0550|consen  451 GFDPFNIFR  459 (486)
T ss_pred             CcChhhhhh
Confidence            555555543

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=99.54  E-value=9.4e-15  Score=86.58  Aligned_cols=57  Identities=30%  Similarity=0.752  Sum_probs=53.2

Q ss_pred             ccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          73 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      .+++.+.+.+|.+..+..+|.++|.||+.|.|+++++..|    +.+..|++|||.|.|+.
T Consensus         2 sfYDEieiedftf~~e~~~ftyPCPCGDRFeIsLeDl~~G----E~VArCPSCSLiv~vvy   58 (67)
T COG5216           2 SFYDEIEIEDFTFSREEKTFTYPCPCGDRFEISLEDLRNG----EVVARCPSCSLIVCVVY   58 (67)
T ss_pred             CccceeEeeeeEEcCCCceEEecCCCCCEeEEEHHHhhCC----ceEEEcCCceEEEEEEe
Confidence            3567889999999999999999999999999999999999    99999999999999864

>KOG0722|consensus

Probab=99.52  E-value=6.9e-15  Score=111.07  Aligned_cols=68  Identities=31%  Similarity=0.588  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|.|+||||.++|+..+|.+|||+|++++|||+  ++++.+.|+.|..||++|.|.+.|..||-.+....
T Consensus        33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd  102 (329)
T KOG0722|consen   33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD  102 (329)
T ss_pred             hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence            378999999999999999999999999999999  66677899999999999999999999998777544

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.47  E-value=3.6e-14  Score=96.21  Aligned_cols=50  Identities=34%  Similarity=0.518  Sum_probs=45.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcc
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILK   52 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~   52 (134)
                      ++|+||||++++|.++||++||+|++++|||+. .+...|.+|++||++|.
T Consensus        66 eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~  115 (116)
T PTZ00100         66 EAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999984 45678999999999985

>KOG0714|consensus

Probab=99.44  E-value=4.6e-14  Score=107.39  Aligned_cols=65  Identities=37%  Similarity=0.633  Sum_probs=60.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CH--HHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NS--EHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~--~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +++|.||||.+.|+.++|++||+++++++|||+  .+  .+..+|++|.+||++|+|+.+|..||.++.
T Consensus         3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            489999999999999999999999999999999  22  455689999999999999999999999998

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.44  E-value=9.2e-14  Score=106.92  Aligned_cols=52  Identities=27%  Similarity=0.491  Sum_probs=48.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHHHccC
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----------SEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----------~~~~~~f~~i~~Ay~~L~d   53 (134)
                      ++|+||||++++|.++||++||+|++++|||+.          +.+.++|++|++||++|+.
T Consensus       201 ~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        201 DAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             hHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999991          3578899999999999985

>PHA02624 large T antigen; Provisional

Probab=99.42  E-value=1.3e-13  Score=115.41  Aligned_cols=58  Identities=19%  Similarity=0.377  Sum_probs=54.5

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHH
Q psy7548           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY   60 (134)
Q Consensus         2 ~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   60 (134)
                      ++|++|||+++|  +.++||+|||++++++|||+. .+.++|++|++||++|+|+.+|..|
T Consensus        12 elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         12 ELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            589999999999  999999999999999999994 3467899999999999999999998

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.41  E-value=5.9e-13  Score=96.46  Aligned_cols=65  Identities=26%  Similarity=0.280  Sum_probs=58.0

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCC---C-----HHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDK---N-----SEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk---~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||++||+++.  .+...++++|++|.+++|||+   .     ..+.+....||+||.+|+||.+|+.|-..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            589999999997  789999999999999999999   1     2345678899999999999999999988776

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.40  E-value=2.2e-13  Score=109.84  Aligned_cols=70  Identities=33%  Similarity=0.593  Sum_probs=64.1

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      |+|||||+..+++..+||++||+|+.++||||        ...-++.++.|++||+.|+|...|+.|-.+|.....++
T Consensus        99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQh  176 (610)
T COG5407          99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQH  176 (610)
T ss_pred             ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCcc
Confidence            79999999999999999999999999999999        34678899999999999999999999999988766543

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.26  E-value=7.3e-12  Score=89.51  Aligned_cols=55  Identities=27%  Similarity=0.369  Sum_probs=48.0

Q ss_pred             CCHHHHHHHHHHHHHHcCCCC--C------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548          13 STLEEIKENYKSLILKYHPDK--N------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus        13 as~~~Ik~ay~~l~~~~HPDk--~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      .+..+|+++|+++++++|||+  .      ..+...+..|++||++|+||.+|+.|+..+...
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~   65 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI   65 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            467899999999999999998  1      225678999999999999999999999888743

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=4.5e-11  Score=91.36  Aligned_cols=80  Identities=28%  Similarity=0.399  Sum_probs=64.8

Q ss_pred             CccccccCCC---CCCHHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcccc
Q psy7548           2 NHFEILNCNV---NSTLEEIKENYKSLILKYHPDK-----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTHMN   73 (134)
Q Consensus         2 ~~Y~iLgv~~---~as~~~Ik~ay~~l~~~~HPDk-----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~~~   73 (134)
                      |+|.+||++.   -|++.+|.++.++.+.+||||+     +-.....|+.|+.||+||+|+.+|..||.--.......+.
T Consensus        44 DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advppp~  123 (379)
T COG5269          44 DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVPPPR  123 (379)
T ss_pred             hHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCCCcc
Confidence            6899999986   5789999999999999999999     3556788999999999999999999999776655544433


Q ss_pred             cccccccc
Q psy7548          74 IYKSVSLS   81 (134)
Q Consensus        74 ~~~~~~~~   81 (134)
                      .+....++
T Consensus       124 ~~t~~~Ff  131 (379)
T COG5269         124 IYTPDEFF  131 (379)
T ss_pred             CCCchhHH
Confidence            44333333

>KOG1150|consensus

Probab=99.08  E-value=2.8e-10  Score=83.54  Aligned_cols=60  Identities=35%  Similarity=0.553  Sum_probs=54.6

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHccChHHHHHHH
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYE   61 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd   61 (134)
                      |+|+||.|.|..+.++||+.||+|++..||||    .+.|...|-.|.+||..|-|+..|..-+
T Consensus        54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~  117 (250)
T KOG1150|consen   54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL  117 (250)
T ss_pred             ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            79999999999999999999999999999999    3567888999999999999998666544

>KOG0568|consensus

Probab=98.69  E-value=1.3e-08  Score=76.48  Aligned_cols=54  Identities=28%  Similarity=0.618  Sum_probs=48.4

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHH-HccCh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWN-ILKDE   54 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~-~L~d~   54 (134)
                      |.+|.||||...|+.++++.+|..|++++|||.  ...+.+.|.+|.+||. ||+..
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999  5667889999999998 77643

>KOG1789|consensus

Probab=98.56  E-value=9.3e-08  Score=84.27  Aligned_cols=50  Identities=40%  Similarity=0.705  Sum_probs=44.4

Q ss_pred             ccccccCCCC----CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcc
Q psy7548           3 HFEILNCNVN----STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILK   52 (134)
Q Consensus         3 ~Y~iLgv~~~----as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~   52 (134)
                      -|+||.|+-+    ...+.||++|++|+.+|||||+|+..++|..+++||+.|.
T Consensus      1283 A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1283 AREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            3788888753    3458899999999999999999999999999999999998

>KOG0723|consensus

Probab=98.46  E-value=3.6e-07  Score=60.77  Aligned_cols=47  Identities=32%  Similarity=0.428  Sum_probs=40.6

Q ss_pred             ccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccCh
Q psy7548           5 EILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDE   54 (134)
Q Consensus         5 ~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~   54 (134)
                      .||||++.++.+.||+|+|++++..|||+  .|--   -.+|+||+++|...
T Consensus        60 lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl---AsKINEAKdlLe~~  108 (112)
T KOG0723|consen   60 LILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL---ASKINEAKDLLEGT  108 (112)
T ss_pred             HHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH---HHHHHHHHHHHhcc
Confidence            48999999999999999999999999999  4443   34899999998753

>KOG3192|consensus

Probab=98.09  E-value=5.6e-06  Score=58.69  Aligned_cols=68  Identities=28%  Similarity=0.489  Sum_probs=55.4

Q ss_pred             CCccccccCCC--CCCHHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNV--NSTLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~--~as~~~Ik~ay~~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      ++||.++|...  ...++.++..|.-...++|||+        ...+.+....|++||.+|.||-+|+.|-..+....
T Consensus         8 ~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e   85 (168)
T KOG3192|consen    8 SRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQE   85 (168)
T ss_pred             HHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence            46899997654  4466777778999999999999        33467778999999999999999999987776644

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=6.2e-05  Score=54.54  Aligned_cols=50  Identities=26%  Similarity=0.535  Sum_probs=43.8

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHHHHHc
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK----------NSEHQEMFLKINEAWNIL   51 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----------~~~~~~~f~~i~~Ay~~L   51 (134)
                      +.|.+||++..+...+|+++|+++....|||+          -..+.+++++|++||+.+
T Consensus       114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            56899999999999999999999999999999          245678888899888753

>KOG0431|consensus

Probab=97.48  E-value=0.00013  Score=60.27  Aligned_cols=45  Identities=29%  Similarity=0.505  Sum_probs=33.9

Q ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHHHHHc
Q psy7548           7 LNCNVNSTLEEIKENYKSLILKYHPDK----------NSEHQEMFLKINEAWNIL   51 (134)
Q Consensus         7 Lgv~~~as~~~Ik~ay~~l~~~~HPDk----------~~~~~~~f~~i~~Ay~~L   51 (134)
                      +++..-.+.++||++|||..|..||||          +-.+++.|-.+++||...
T Consensus       394 VsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  394 VSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             CchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            345556799999999999999999999          123556667777777643

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.00027  Score=51.22  Aligned_cols=65  Identities=26%  Similarity=0.383  Sum_probs=52.5

Q ss_pred             CCccccccCCCCC--CHHHHHHHHHHHHHHcCCCC---C-----HHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDK---N-----SEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk---~-----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      ++++..+|.++.+  ..+.++..|+.+.+.+|||+   .     ..+.+.+..++.||.+|.+|.+|..|-..+.
T Consensus         1 ~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           1 SDGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CCcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            3566777777765  34569999999999999999   1     1244678999999999999999999987666

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=96.49  E-value=0.0053  Score=35.44  Aligned_cols=36  Identities=33%  Similarity=0.736  Sum_probs=27.4

Q ss_pred             eeeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEeeC
Q psy7548          90 QMFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR  134 (134)
Q Consensus        90 ~~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~~  134 (134)
                      .+..|.| +||..+  ++.....+       +.|+.|+..|.+..|
T Consensus         3 ~~~~Y~C~~Cg~~~--~~~~~~~~-------irCp~Cg~rIl~K~R   39 (49)
T COG1996           3 AMMEYKCARCGREV--ELDQETRG-------IRCPYCGSRILVKER   39 (49)
T ss_pred             ceEEEEhhhcCCee--ehhhccCc-------eeCCCCCcEEEEecc
Confidence            3467899 999988  33444555       999999999998653

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.81  E-value=0.017  Score=31.15  Aligned_cols=34  Identities=15%  Similarity=0.473  Sum_probs=28.4

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548          94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v  131 (134)
                      ..| +||..|.|..+.+...    ...+.|+.|...+.+
T Consensus         3 ~~CP~C~~~~~v~~~~~~~~----~~~v~C~~C~~~~~~   37 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQLGAN----GGKVRCGKCGHVWYA   37 (38)
T ss_pred             EECCCCCCEEEeCHHHcCCC----CCEEECCCCCCEEEe
Confidence            467 9999999999988754    347999999998876

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=95.80  E-value=0.019  Score=39.71  Aligned_cols=50  Identities=30%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             ccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChH
Q psy7548           5 EILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEK   55 (134)
Q Consensus         5 ~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~   55 (134)
                      .||||++..+.++|.+.|.+|....+|++ .++.-.-.+|..|.+.|....
T Consensus        62 ~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~k-GGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   62 QILNVKEELSREEIQKRYKHLFKANDPSK-GGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHT--G--SHHHHHHHHHHHHHHT-CCC-TS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHhccCCCc-CCCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999997 234444567888888877444

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=94.04  E-value=0.065  Score=28.95  Aligned_cols=34  Identities=15%  Similarity=0.585  Sum_probs=28.3

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548          94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v  131 (134)
                      ..| .|+..|.|+.+.+-.+    -..+.|+.|.....|
T Consensus         3 i~CP~C~~~f~v~~~~l~~~----~~~vrC~~C~~~f~v   37 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDKLPAG----GRKVRCPKCGHVFRV   37 (37)
T ss_pred             EECCCCCceEEcCHHHcccC----CcEEECCCCCcEeeC
Confidence            357 8999999999988776    568999999987654

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=92.56  E-value=0.16  Score=27.28  Aligned_cols=32  Identities=19%  Similarity=0.637  Sum_probs=26.7

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceE
Q psy7548          94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLL  129 (134)
Q Consensus        94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i  129 (134)
                      ..| +|+..|.|..+.+-..    -..+.|+.|+...
T Consensus         3 i~Cp~C~~~y~i~d~~ip~~----g~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEKIPPK----GRKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHHCCCC----CcEEECCCCCCEe
Confidence            357 8999999999988765    5689999999764

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.42  E-value=0.3  Score=29.11  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=22.2

Q ss_pred             cccccCCCCCCHHHHHHHHHHHHH
Q psy7548           4 FEILNCNVNSTLEEIKENYKSLIL   27 (134)
Q Consensus         4 Y~iLgv~~~as~~~Ik~ay~~l~~   27 (134)
                      |++|||+++.+.+.|-.+|+....
T Consensus         8 y~~Lgi~~~~~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    8 YEILGIDEDTDDDFIISAFQSKVN   31 (62)
T ss_pred             HHHhCcCCCCCHHHHHHHHHHHHH
Confidence            889999999999999999998766

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=92.29  E-value=0.38  Score=27.05  Aligned_cols=31  Identities=26%  Similarity=0.624  Sum_probs=23.6

Q ss_pred             eeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          93 TYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        93 ~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      .|.| .||..+.+..          ...+.|+.|...|....
T Consensus         2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rIlyK~   33 (44)
T smart00659        2 IYICGECGRENEIKS----------KDVVRCRECGYRILYKK   33 (44)
T ss_pred             EEECCCCCCEeecCC----------CCceECCCCCceEEEEe
Confidence            3778 8999888761          13389999999998754

present in RNA polymerase I, II and III

>KOG0724|consensus

Probab=92.02  E-value=0.22  Score=39.30  Aligned_cols=53  Identities=34%  Similarity=0.492  Sum_probs=42.7

Q ss_pred             CCCHHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548          12 NSTLEEIKENYKSLILKYHPDKNS-------EHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus        12 ~as~~~Ik~ay~~l~~~~HPDk~~-------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      .++..+|+.+|+..++..||++..       ...+.++.|.+||.+|.+...|...|...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~   62 (335)
T KOG0724|consen    3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD   62 (335)
T ss_pred             cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence            467889999999999999999832       45677999999999999876655555444

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=91.13  E-value=0.71  Score=34.13  Aligned_cols=38  Identities=21%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcc
Q psy7548          10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILK   52 (134)
Q Consensus        10 ~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~   52 (134)
                      +++||.+||.+|+.++..+|--|.     +.-..|..||+.|.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y~gd~-----~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQYAGDE-----KSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHH
Confidence            578999999999999999996653     33347888987654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.94  E-value=0.3  Score=29.95  Aligned_cols=35  Identities=23%  Similarity=0.583  Sum_probs=25.9

Q ss_pred             eeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548          93 TYPC-RCG--AEFCIEEQDTEGDSSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        93 ~~~c-rcG--~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v  131 (134)
                      .+.| .|+  ..-.++......|    .+++.|++|..+..|
T Consensus         4 ~FTC~~C~~Rs~~~~sk~aY~~G----vViv~C~gC~~~HlI   41 (66)
T PF05180_consen    4 TFTCNKCGTRSAKMFSKQAYHKG----VVIVQCPGCKNRHLI   41 (66)
T ss_dssp             EEEETTTTEEEEEEEEHHHHHTS----EEEEE-TTS--EEES
T ss_pred             EEEcCCCCCccceeeCHHHHhCC----eEEEECCCCcceeee
Confidence            4667 787  5777888888888    899999999988765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=89.64  E-value=0.83  Score=30.84  Aligned_cols=23  Identities=17%  Similarity=0.404  Sum_probs=20.3

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCC
Q psy7548          11 VNSTLEEIKENYKSLILKYHPDK   33 (134)
Q Consensus        11 ~~as~~~Ik~ay~~l~~~~HPDk   33 (134)
                      +..+..+++.|.|...++.|||.
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDl   26 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDL   26 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcc
Confidence            34577889999999999999997

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=87.83  E-value=1.4  Score=24.65  Aligned_cols=30  Identities=33%  Similarity=0.769  Sum_probs=22.4

Q ss_pred             eeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548          93 TYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        93 ~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v  131 (134)
                      .+.| .||..+.+.....         .+.|+.|...+..
T Consensus         3 ~y~C~~CG~~~~~~~~~~---------~~~Cp~CG~~~~~   33 (46)
T PRK00398          3 EYKCARCGREVELDEYGT---------GVRCPYCGYRILF   33 (46)
T ss_pred             EEECCCCCCEEEECCCCC---------ceECCCCCCeEEE
Confidence            4778 8999988875532         3799999887654

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=87.17  E-value=0.82  Score=25.21  Aligned_cols=32  Identities=28%  Similarity=0.776  Sum_probs=23.3

Q ss_pred             eeeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7548          90 QMFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSL  127 (134)
Q Consensus        90 ~~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl  127 (134)
                      ..|.|.| .||..|++...--+      ...+.|+.|.-
T Consensus         2 P~Yey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (42)
T PF09723_consen    2 PIYEYRCEECGHEFEVLQSISE------DDPVPCPECGS   34 (42)
T ss_pred             CCEEEEeCCCCCEEEEEEEcCC------CCCCcCCCCCC
Confidence            4588999 79999988654322      23479999976

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=85.98  E-value=1.7  Score=25.54  Aligned_cols=33  Identities=36%  Similarity=0.867  Sum_probs=24.8

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      ..| .||..+.+.....  |     .++.|+.|..-+.|..
T Consensus         3 ~~CP~CG~~iev~~~~~--G-----eiV~Cp~CGaeleVv~   36 (54)
T TIGR01206         3 FECPDCGAEIELENPEL--G-----ELVICDECGAELEVVS   36 (54)
T ss_pred             cCCCCCCCEEecCCCcc--C-----CEEeCCCCCCEEEEEe
Confidence            357 8999888865443  5     3689999999988853

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=85.41  E-value=1.4  Score=23.57  Aligned_cols=33  Identities=24%  Similarity=0.688  Sum_probs=23.3

Q ss_pred             eeeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcce
Q psy7548          90 QMFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLL  128 (134)
Q Consensus        90 ~~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~  128 (134)
                      ..|.+.| .||..|.+......      ...+.|+.|..-
T Consensus         2 p~Y~y~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~~   35 (41)
T smart00834        2 PIYEYRCEDCGHTFEVLQKISD------DPLATCPECGGD   35 (41)
T ss_pred             CCEEEEcCCCCCEEEEEEecCC------CCCCCCCCCCCc
Confidence            3578899 89998987765321      134789999873

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF05280 FlhC: Flagellar transcriptional activator (FlhC); InterPro: IPR007944 This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins

Probab=85.22  E-value=0.69  Score=33.67  Aligned_cols=30  Identities=30%  Similarity=0.731  Sum_probs=13.9

Q ss_pred             eeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcce
Q psy7548          92 FTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLL  128 (134)
Q Consensus        92 ~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~  128 (134)
                      --.+| +||+.|.+...++...       +.|+.|++.
T Consensus       133 ~l~~C~~C~~~fv~~~~~~~~~-------~~Cp~C~~p  163 (175)
T PF05280_consen  133 QLAPCRRCGGHFVTHAHDPRHS-------FVCPFCQPP  163 (175)
T ss_dssp             EEEE-TTT--EEEEESS--SS-----------TT----
T ss_pred             cccCCCCCCCCeECcCCCCCcC-------cCCCCCCCc
Confidence            35788 7999999998876666       799999864

FlhC combines with FlhD to form a regulatory complex in Escherichia coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator [].; GO: 0003677 DNA binding, 0030092 regulation of flagellum assembly, 0045893 positive regulation of transcription, DNA-dependent; PDB: 2AVU_E.

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=81.61  E-value=5.3  Score=25.10  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHc----CCCC
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKY----HPDK   33 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~----HPDk   33 (134)
                      +|.-+++|+.|.|+..||+.|-++..+++    ||.+
T Consensus         3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~   39 (88)
T COG5552           3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA   39 (88)
T ss_pred             cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence            34557889999999999999988877776    6655

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=81.07  E-value=1.9  Score=24.47  Aligned_cols=32  Identities=25%  Similarity=0.761  Sum_probs=22.2

Q ss_pred             eeeeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7548          90 QMFTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSL  127 (134)
Q Consensus        90 ~~~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl  127 (134)
                      ..|.|.| .||..|++....-+      ...+.|+.|..
T Consensus         2 P~Yey~C~~Cg~~fe~~~~~~~------~~~~~CP~Cg~   34 (52)
T TIGR02605         2 PIYEYRCTACGHRFEVLQKMSD------DPLATCPECGG   34 (52)
T ss_pred             CCEEEEeCCCCCEeEEEEecCC------CCCCCCCCCCC
Confidence            3578999 79998988643211      23467999986

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=80.66  E-value=1.4  Score=23.07  Aligned_cols=31  Identities=32%  Similarity=0.649  Sum_probs=18.5

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEeeC
Q psy7548          94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITAR  134 (134)
Q Consensus        94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~~  134 (134)
                      |-| +||..+.+...          ..+.|+.|...|....|
T Consensus         1 Y~C~~Cg~~~~~~~~----------~~irC~~CG~RIlyK~R   32 (32)
T PF03604_consen    1 YICGECGAEVELKPG----------DPIRCPECGHRILYKKR   32 (32)
T ss_dssp             EBESSSSSSE-BSTS----------STSSBSSSS-SEEBE--
T ss_pred             CCCCcCCCeeEcCCC----------CcEECCcCCCeEEEecC
Confidence            346 78877774332          12789999999976543

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	134
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		7e-14
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		4e-11
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		9e-10
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-09
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-09
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		8e-09
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		1e-07
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-07
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		1e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-07
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-07
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		2e-07
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-07
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		2e-07
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		3e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		6e-07
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-06
1yws_A	82	Solution Structure Of Ybl071w-A From Saccharomyces		6e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		8e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		1e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		2e-05
1yop_A	83	The Solution Structure Of Kti11p Length = 83		2e-05
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		8e-04

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 15/140 (10%)
Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 53  DEKERKLYESQLLSQQQTHMN-IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + + + E 
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEE 130
Query: 112 DSSDDNILIACDTCSLLLEI 131
            S     LI+CDTCSL++E+
Sbjct: 131 VS-----LISCDTCSLIIEL 145

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 63.5 bits (153), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          ++++L    N+T EE+K+ Y+ L LKYHPDKN    E F +I++A+ +L D K+R+LY+
Sbjct: 8  YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 43/60 (71%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
           ++++L    +++  E+K+ Y+ + LK+HPDKN +  E F +I++A+ +L DEK+R++Y+
Sbjct: 9  GYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKE 56
           N++E+L    +++ E+IK+ Y+ L L++HPDKN +++E     F  ++EA+ +L D K+
Sbjct: 9  ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68
Query: 57 RKLYE 61
          R LY+
Sbjct: 69 RSLYD 73

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 44/65 (67%), Gaps = 4/65 (6%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKE 56
          ++++E+L+    ++ E IK+ Y+ L LK+HPDKN E++E     F ++ EA+ +L D K+
Sbjct: 9  VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68
Query: 57 RKLYE 61
          R +Y+
Sbjct: 69 RDIYD 73

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERKLY 60
           + +L  + N+T ++IK++Y+ L LKYHPDKN ++ E    F +IN A  IL D  +R +Y
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79
Query: 61  ESQLLSQQQTHMNIYKSVSLSDMEHKGESQMFTY 94
           +             Y S+ L   E  GE  + TY
Sbjct: 80  DK------------YGSLGLYVAEQFGEENVNTY 101

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          N + +L  +  ++  EI++ +K L LK HPDKN  +      FLKIN A+ +LKDE  RK
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 59 LYE 61
           Y+
Sbjct: 82 KYD 84

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N   +E    F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          N + +L  +  ++  EI++ +K L LK HPDKN  +      FLKIN A+ +LKDE  RK
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 59 LYE 61
           Y+
Sbjct: 63 KYD 65

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          ++++ L     ++ EEIK  Y+   L+YHPDKN E   +E F +I EA+++L D ++R++
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63
Query: 60 YE 61
          ++
Sbjct: 64 FD 65

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM---FLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N   +E    F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE---HQEMFLKINEAWNILKDEKERK 58
          ++++IL    N++ +EIK+ Y  L  KYHPD N +    +E F ++ EA+ +L DE +RK
Sbjct: 8  DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67
Query: 59 LYES 62
           Y++
Sbjct: 68 QYDA 71

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N    E +  F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 40/58 (68%)
Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          +++L  + ++  +E+K+ Y+   LKYHPDK +   E F +I+EA+ IL D ++R++Y+
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKL 59
          +++EIL  +  ++ E++K+ Y+ L LK+HPDKN      E F  I  A+ +L + ++RK 
Sbjct: 8  DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQ 67
Query: 60 YE 61
          Y+
Sbjct: 68 YD 69

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
           +++ IL       L+ IK  Y+ L  KYHPD  K ++ +  F  + EAW +LKDE+ R  
Sbjct: 29  DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 60  Y--------ESQLLSQQQTHMNIYKSVSLSDM 83
           Y        +     Q+QTH   Y      D+
Sbjct: 89  YDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDI 120

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
          + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76
Query: 53 DEKERKLYESQ 63
          +E+ +K Y+ Q
Sbjct: 77 NEETKKKYDLQ 87

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 45/65 (69%), Gaps = 4/65 (6%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEM----FLKINEAWNILKDEKE 56
           +++EIL+   +++ ++IK+ Y+   L++HPDKN +++E     F ++ EA+ +L D+ +
Sbjct: 2  ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 57 RKLYE 61
          R++Y+
Sbjct: 62 REIYD 66

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPD--KNSEHQEMFLKINEAWNILKDEKERKL 59
          +++ I+       L+ IK  Y+ L  KYHPD  K  + +  F ++ EAW +L DE+ R  
Sbjct: 6  DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 60 YE 61
          Y+
Sbjct: 66 YD 67

>pdb|1YWS|A Chain A, Solution Structure Of Ybl071w-A From Saccharomyces Cerevisiae Length = 82

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDSSDDNILIACDTCSLLLE 130
           M+ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 1   MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 55
Query: 131 IT 132
           + 
Sbjct: 56  VV 57

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
          +++L     +T  +IK  Y      YHPD+NS   E  E F +I++A+ +L     R+ Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79
Query: 61 ESQLLS 66
          +  LLS
Sbjct: 80 DRGLLS 85

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 3  HFEILNCNVNSTLEEIKENYKSLILKYHPDKN--SEHQEMFLKINEAWNILKDEKERKLY 60
          +++IL    +++  +IK+ +  L +KYHPDKN   + +  F +I EA+  L D   RK Y
Sbjct: 9  YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 61 ES 62
          ++
Sbjct: 69 DT 70

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 1  MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERK 58
           + + +L  +  ++  +IK+ YK L  ++HPDKN +   ++ F++I++A+ IL +E++R 
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 59 LYE 61
           Y+
Sbjct: 77 NYD 79

>pdb|1YOP|A Chain A, The Solution Structure Of Kti11p Length = 83

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDT-EGDSSDDNILIACDTCSLLLE 130
           ++ Y  + + DM  + E+QMFTYPC CG  F I   D  EG+      +  C +CSL+++
Sbjct: 2   VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEGEK-----VAVCPSCSLMID 56
Query: 131 IT 132
           + 
Sbjct: 57  VV 58

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ---EMFLKINEAWNILKDEKERK 58
          +++ +L C+  S++E+I   +K   L+ HPDK+ E+    E F K+ +A  IL +E+ R 
Sbjct: 21 DYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80
Query: 59 LYESQLLSQ 67
           Y+    SQ
Sbjct: 81 RYDHWRRSQ 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	134
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	6e-33
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-15
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-15
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-15
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	8e-15
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	5e-14
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	8e-14
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	1e-13
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	1e-13
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-13
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-13
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-13
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	2e-13
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-13
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-13
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-13
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-13
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	5e-13
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	9e-13
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-12
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	3e-12
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	6e-12
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-11
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-11
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	4e-11
2guz_A	71	Mitochondrial import inner membrane translocase su	5e-11
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	8e-11
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	1e-10
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-10
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	4e-10
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	7e-10
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	3e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-07
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	3e-07
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	5e-06

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  112 bits (281), Expect = 6e-33
 Identities = 41/140 (29%), Positives = 76/140 (54%), Gaps = 15/140 (10%)

Query: 2   NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
           + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 11  DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70

Query: 53  DEKERKLYESQLLSQQQTHM-NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEG 111
           +E+ ++ Y+ Q       ++  +   V L +M        F   CRCG ++ + +     
Sbjct: 71  NEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSK----- 125

Query: 112 DSSDDNILIACDTCSLLLEI 131
           D +++  LI+CDTCSL++E+
Sbjct: 126 DEAEEVSLISCDTCSLIIEL 145

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 65.4 bits (160), Expect = 3e-15
 Identities = 21/57 (36%), Positives = 39/57 (68%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY 60
          +++L  + ++  +E+K+ Y+   LKYHPDK +   E F +I+EA+ IL D ++R++Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIY 67

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 64.6 bits (158), Expect = 3e-15
 Identities = 21/57 (36%), Positives = 41/57 (71%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLY 60
          +++L    +++  E+K+ Y+ + LK+HPDKN +  E F +I++A+ +L DEK+R++Y
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIY 67

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 65.5 bits (160), Expect = 4e-15
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          + +L C+  S++E+I   +K   L+ HPDK+    +  E F K+ +A  IL +E+ R  Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 64.0 bits (156), Expect = 8e-15
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH--QEMFLKINEAWNILKDEKERKL 59
          + +++L     ++ +E+ + Y+ L +  HPDK      ++ F  +  A   L    +   
Sbjct: 28 DSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87

Query: 60 YE 61
            
Sbjct: 88 SS 89

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 62.8 bits (153), Expect = 5e-14
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          + +L  + N+T ++IK++Y+ L LKYHPDKN    E  + F +IN A  IL D  +R +Y
Sbjct: 20 YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIY 79

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 61.2 bits (149), Expect = 8e-14
 Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          + +L  +  ++  +IK+ YK L  ++HPDKN +    + F++I++A+ IL +E++R  Y
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNY 78

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          +EIL  +  +   EI++ YK L +KYHPD+N    E +  F +I EA+ +L D ++R  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 64.1 bits (156), Expect = 1e-13
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 5  EILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
           +L  +  ++  EI++ +K L LK HPDKN         FLKIN A+ +LKDE  RK Y
Sbjct: 6  SLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 61.2 bits (149), Expect = 1e-13
 Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 4/61 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
          +E+L    +++ E+IK+ Y+ L L++HPDKN     E ++ F  ++EA+ +L D K+R L
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 60 Y 60
          Y
Sbjct: 72 Y 72

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 60.7 bits (148), Expect = 1e-13
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
          +E+L+    ++ E IK+ Y+ L LK+HPDKN     E +  F ++ EA+ +L D K+R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 60 Y 60
          Y
Sbjct: 72 Y 72

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 60.3 bits (147), Expect = 2e-13
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          ++ L     ++ EEIK  Y+   L+YHPDKN E    E F +I EA+++L D ++R+++
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 9/66 (13%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILKDE 54
          + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL +E
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 55 KERKLY 60
          + +K Y
Sbjct: 79 ETKKKY 84

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNS---EHQEMFLKINEAWNILKDEKERKLY 60
          +++L     +T  +IK  Y      YHPD+NS   E  E F +I++A+ +L     R+ Y
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKY 79

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 60.0 bits (146), Expect = 2e-13
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN---SEHQEMFLKINEAWNILKDEKERKLY 60
          ++IL    N++ +EIK+ Y  L  KYHPD N    + +E F ++ EA+ +L DE +RK Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 60.0 bits (146), Expect = 3e-13
 Identities = 20/61 (32%), Positives = 42/61 (68%), Gaps = 4/61 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQE----MFLKINEAWNILKDEKERKL 59
          +EIL+   +++ ++IK+ Y+   L++HPDKN +++E     F ++ EA+ +L D+ +R++
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 60 Y 60
          Y
Sbjct: 65 Y 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 59.6 bits (145), Expect = 4e-13
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          +EIL  +  ++ E++K+ Y+ L LK+HPDKN      E F  I  A+ +L + ++RK Y
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 59.2 bits (144), Expect = 5e-13
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
          ++IL    +++  +IK+ +  L +KYHPDKN        F +I EA+  L D   RK Y
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A Length = 83

 Score = 58.7 bits (142), Expect = 9e-13
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
           ++ Y  + + DM  + E+QMFTYPC CG  F I   D      +   +  C +CSL++++
Sbjct: 2   VSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 57

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 5  EILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQ--EMFLKINEAWNILKDEKERKLY 60
           IL       L+ IK  Y+ L  KYHPD + E+     F  + EAW +LKDE+ R  Y
Sbjct: 32 AILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEY 89

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1 Length = 83

 Score = 57.6 bits (139), Expect = 3e-12
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 66  SQQQTHMNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTC 125
           S        +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +C
Sbjct: 3   SGSSGMAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSC 58

Query: 126 SLLLEI 131
           SL++++
Sbjct: 59  SLIIKV 64

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 57.8 bits (140), Expect = 4e-12
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 2  NHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDE 54
          N +++L  N      +++ + Y++L  K+HPD+          +E F  I  A+  LKD+
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75

Query: 55 KERKLYESQLLSQQQTHMNIY 75
          + +  Y+  L    Q   N Y
Sbjct: 76 EAKTNYDYYLDHPDQRFYNYY 96

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 60.5 bits (146), Expect = 6e-12
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 4   FEILNCNVNSTLEEIKENYKSLILKYHPDKNSEH---QEMFLKINEAWNILKDEKERKLY 60
           + +L  +  ++  EI++ +K L LK HPDKN  +      FLKIN A+ +LKDE  RK Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 61  ESQLLSQQQTHMNIYKSVSLSDMEHKG 87
           +       + +               G
Sbjct: 84  DKYGEKGLEDNQGGQYESWSYYRYDFG 110

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 57.7 bits (139), Expect = 2e-11
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 2  NHFEILNCNVNSTL-------EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE 54
            +E+        L         +++ Y+ L  ++HPD   +  E    +N+A++ LKD 
Sbjct: 12 TFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDP 71

Query: 55 KERKLYESQL 64
            R  Y  +L
Sbjct: 72 LRRSQYMLKL 81

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 55.6 bits (134), Expect = 2e-11
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 10 NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYE 61
          +    +  +++ Y     ++HPDK  + +E   K+N  +  ++D  +     
Sbjct: 19 SAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQP 69

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 56.8 bits (136), Expect = 4e-11
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 14  TLEEIKENYKSLILKYHPDKNSEH------QEMFLKINEAWNILKDEKERKLY 60
           T E++K+ Y+  +L  HPDK +        + +F+++N+AW+  +++ ++ LY
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 53.9 bits (130), Expect = 5e-11
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 4  FEILNCNVNS-TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
           +ILN   N+ T +++KE ++ ++L  HPDK      +  KINEA + L+     K
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSP-FLATKINEAKDFLEKRGISK 71

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 55.7 bits (134), Expect = 8e-11
 Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 1  MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
          +   ++L    +    +  +++ Y     ++HPDK  + +E   K+N  +  ++D  +  
Sbjct: 11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYA 69

Query: 59 LYE 61
             
Sbjct: 70 HQP 72

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens} Length = 89

 Score = 53.4 bits (128), Expect = 1e-10
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 74  IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
            +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4   FHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLE----NGEDVATCPSCSLIIKV 57

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 55.0 bits (132), Expect = 2e-10
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 1  MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
          M++F +        L  + +   ++ L  +YHPDK +   +            IN+AW  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 51 LKDEKERKLYESQL 64
          L+    R  Y   L
Sbjct: 61 LRHPLMRAEYLLSL 74

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 51.3 bits (123), Expect = 7e-10
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 5  EILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLY 60
           ++         E K+  + L LK+HPDKN        E+F  +    N L   +++   
Sbjct: 20 SVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAFL 76

Query: 61 E 61
          +
Sbjct: 77 D 77

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 13 STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ 68
               +++ YK   L  HPDK      +  ++N  W   K E             Q
Sbjct: 25 GDFGRMQQAYKQQSLLLHPDKGGS-HALMQELNSLWGTFKTEVYNLRMNLGGTGFQ 79

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 6   ILNCNVNSTLEEIKENYKSLILKYHPDKNSEH------QEMFLKINEAWNILKDEKERKL 59
           IL    N+  +EI + Y+ L L++HPD           ++ F+ I  A  +L D + RK 
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446

Query: 60  Y 60
           +
Sbjct: 447 F 447

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 16 EEIKENYKSLILKYHPDKNSEHQE------MFLKINEAWNILKDE 54
          E++K+ Y+  +L  HP K +          +F+++N+AW+  +++
Sbjct: 48 EQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 43.6 bits (102), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 1   MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQE--------MFLKINEAWNI 50
            ++F +++CN +  +   +++  Y+ L    HPD  S+  +            +N+A+  
Sbjct: 43  RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKT 102

Query: 51  LKDEKERKLYE 61
           L     R LY 
Sbjct: 103 LLAPLSRGLYL 113

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 14  TLEEIKENYKSLILKYHPDKNSEH----------QEMFLKINEAWNILKDE 54
               ++++Y+  +L  HPDK  +           +++F  + EAW+     
Sbjct: 53  EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTL 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	134
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	100.0
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.89
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.89
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.89
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.89
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.88
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.88
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.88
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.88
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.88
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.87
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.87
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.87
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.87
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.87
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.85
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.85
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.83
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.82
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.81
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.79
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.78
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.76
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.76
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.75
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.75
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.73
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.73
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.72
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.72
2guz_A	71	Mitochondrial import inner membrane translocase su	99.7
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.67
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	99.67
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	99.66
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	99.66
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.26
2guz_B	65	Mitochondrial import inner membrane translocase su	99.02
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	93.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	92.92
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	91.05
2avu_E	192	Flagellar transcriptional activator FLHC; C4-type	83.25

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=100.00  E-value=9.9e-38  Score=221.29  Aligned_cols=128  Identities=31%  Similarity=0.682  Sum_probs=114.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---C------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhhcc
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---N------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQTH   71 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~   71 (134)
                      +|||+||||+++|+.++||+|||+|++++||||   .      ..+.+.|+.|++||++|+||.+|+.||..+.......
T Consensus        10 ~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~~~~~   89 (155)
T 2l6l_A           10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRN   89 (155)
T ss_dssp             SHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHHHHHT
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchhhccc
Confidence            479999999999999999999999999999999   1      1357899999999999999999999999887665543


Q ss_pred             -cccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          72 -MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        72 -~~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                       +.....+.+++|++.++...|+++||||+.|.|+.+++..|     .++.|++|||||.|..
T Consensus        90 ~~~~~~~~~~~~m~~~e~~~~f~~~CrCG~~f~i~~~~l~~~-----~~v~C~sCSl~~~v~~  147 (155)
T 2l6l_A           90 VGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKDEAEEV-----SLISCDTCSLIIELLH  147 (155)
T ss_dssp             TCSSSEEEETTTSEEETTTTEEEEECSSSCEEEEETTHHHHC-----CEEECSSSSCEEEEEC
T ss_pred             cccccceeeHHHhccccCCcEEEEcCCCCCeEEecHHHhCCC-----CEEECCCCceEEEEEE
Confidence             55567778899999999999999999999999999999876     6899999999999974

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.89  E-value=1.1e-23  Score=132.85  Aligned_cols=68  Identities=29%  Similarity=0.534  Sum_probs=63.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|||+||||+++||.++||+||+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||..+.+..
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            489999999999999999999999999999999  46788999999999999999999999999887643

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.89  E-value=6.2e-24  Score=132.73  Aligned_cols=65  Identities=32%  Similarity=0.668  Sum_probs=60.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      .|||+||||+++|+.++||++|+++++++|||+.+.+.+.|+.|++||++|+||.+|..||..+.
T Consensus         8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            47999999999999999999999999999999966667899999999999999999999998765

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3.8e-23  Score=133.55  Aligned_cols=69  Identities=30%  Similarity=0.514  Sum_probs=64.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      +|||+||||+++|+.++||++|++|++++|||+  .+.+.+.|+.|++||++|+||.+|..||..+.....
T Consensus         7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   77 (88)
T 2ctr_A            7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFT   77 (88)
T ss_dssp             CSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHT
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            489999999999999999999999999999999  567889999999999999999999999998876543

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=132.46  Aligned_cols=67  Identities=31%  Similarity=0.537  Sum_probs=62.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      .|||+||||+++|+.++||++|+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus         7 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            489999999999999999999999999999999  5678899999999999999999999999887653

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=2e-23  Score=132.15  Aligned_cols=66  Identities=35%  Similarity=0.579  Sum_probs=61.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      .|||+||||+++|+.++||++|++|++++|||+   .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus         7 ~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            489999999999999999999999999999999   456889999999999999999999999987754

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=3.7e-23  Score=133.63  Aligned_cols=66  Identities=27%  Similarity=0.581  Sum_probs=62.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++|+.++||++|+++++++|||+  .+.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        17 ~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999  457889999999999999999999999998864

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.88  E-value=4.6e-23  Score=134.22  Aligned_cols=69  Identities=32%  Similarity=0.620  Sum_probs=63.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQQ   69 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~   69 (134)
                      .|||+||||+++|+.++||++|++|++++|||+.+...+.|+.|++||++|+||.+|..||.++.....
T Consensus         8 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   76 (92)
T 2o37_A            8 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR   76 (92)
T ss_dssp             CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence            379999999999999999999999999999999666677999999999999999999999999887654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=3.1e-23  Score=132.10  Aligned_cols=66  Identities=35%  Similarity=0.659  Sum_probs=61.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++++.++||+||+++++++|||+.    +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus         9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             CCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            5899999999999999999999999999999992    35778999999999999999999999988754

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=8.5e-23  Score=137.40  Aligned_cols=68  Identities=34%  Similarity=0.524  Sum_probs=63.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+   .+.+.+.|+.|++||++|+||.+|..||+.+....
T Consensus        20 ~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~   90 (112)
T 2ctq_A           20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQM   90 (112)
T ss_dssp             CCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhcc
Confidence            489999999999999999999999999999999   35688999999999999999999999999988754

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=6e-23  Score=135.31  Aligned_cols=67  Identities=30%  Similarity=0.539  Sum_probs=61.8

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++|+.++||+||++|++++|||+   .+.+.+.|+.|++||++|+||.+|..||..+...
T Consensus        17 ~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             SHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            479999999999999999999999999999999   4567899999999999999999999999876543

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.87  E-value=1.3e-22  Score=133.79  Aligned_cols=68  Identities=26%  Similarity=0.536  Sum_probs=61.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||+||+++++++|||+    .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~   73 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGL   73 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC--
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            489999999999999999999999999999999    24578899999999999999999999999987654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1e-22  Score=132.46  Aligned_cols=68  Identities=34%  Similarity=0.639  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK----NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk----~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||++|++|++++|||+    .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus         9 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             cCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            489999999999999999999999999999999    24678899999999999999999999999876543

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.87  E-value=6.9e-23  Score=133.56  Aligned_cols=66  Identities=35%  Similarity=0.725  Sum_probs=61.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC---------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN---------SEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~---------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      .|||+||||+++|+.++||+||++|++++|||+.         +.+.+.|+.|++||++|+||.+|..||..+..
T Consensus        16 ~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            4899999999999999999999999999999992         56789999999999999999999999998764

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=2.5e-22  Score=134.55  Aligned_cols=68  Identities=37%  Similarity=0.606  Sum_probs=63.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|||+||||+++|+.++||+||++|++++|||+   .+.+.+.|+.|++||++|+||.+|..||..+....
T Consensus        17 ~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~   87 (109)
T 2ctw_A           17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGL   87 (109)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHH
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhccccc
Confidence            479999999999999999999999999999999   45678999999999999999999999999887654

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.85  E-value=1.1e-22  Score=134.86  Aligned_cols=68  Identities=32%  Similarity=0.592  Sum_probs=63.2

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      .|||+||||+++||.++||++|++|++++|||+   .+.+.++|+.|++||++|+||.+|..||..+....
T Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (103)
T 1bq0_A            3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAF   73 (103)
T ss_dssp             CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSS
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhh
Confidence            489999999999999999999999999999999   35678999999999999999999999999887654

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.85  E-value=8.4e-22  Score=131.83  Aligned_cols=67  Identities=27%  Similarity=0.445  Sum_probs=62.0

Q ss_pred             CCccccccCCCCC-CHHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNS-TLEEIKENYKSLILKYHPDKN------SEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~a-s~~~Ik~ay~~l~~~~HPDk~------~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++| +.++||+||+++++++|||+.      +.+.+.|+.|++||++|+||.+|..||..+...
T Consensus        15 ~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           15 ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             SCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             CCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            4899999999999 999999999999999999982      457899999999999999999999999988643

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.83  E-value=5.4e-21  Score=139.62  Aligned_cols=68  Identities=38%  Similarity=0.592  Sum_probs=63.6

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+   .+.+.++|+.|++||++|+||.+|+.||+.+....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~   72 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   72 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccccc
Confidence            589999999999999999999999999999999   45688999999999999999999999999987654

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.82  E-value=2.7e-21  Score=138.86  Aligned_cols=68  Identities=24%  Similarity=0.382  Sum_probs=61.1

Q ss_pred             CCccccccCCCCC--CHHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      ||||+||||++++  +.++||++||+|++++|||+.+        .+.+.|+.|++||+||+||.+|..||..+....
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~   78 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFD   78 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTCC
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCCC
Confidence            6899999999999  9999999999999999999921        245789999999999999999999999876443

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=7.5e-21  Score=123.29  Aligned_cols=58  Identities=19%  Similarity=0.406  Sum_probs=54.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHH
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERK   58 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~   58 (134)
                      +|||+||||+++|+.++||+|||+|++++|||+  .+.+.++|+.|++||++|+||.+|.
T Consensus        27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            489999999999999999999999999999999  4678899999999999999998764

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.79  E-value=3e-20  Score=137.00  Aligned_cols=67  Identities=24%  Similarity=0.355  Sum_probs=59.1

Q ss_pred             CCccccccCCCC--CCHHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNS--------EHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk~~--------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++  ++.++||++||+|++++|||+.+        .+.++|+.|++||+||+||.+|+.||..+...
T Consensus        43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~  119 (207)
T 3bvo_A           43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGI  119 (207)
T ss_dssp             CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTC
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCC
Confidence            589999999986  78999999999999999999921        24678999999999999999999999876543

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.78  E-value=1.2e-20  Score=147.71  Aligned_cols=66  Identities=33%  Similarity=0.629  Sum_probs=0.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLS   66 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   66 (134)
                      +|||+||||+++||.++||+|||+|++++|||+  .+.+.++|++|++||++|+||.+|+.||+++..
T Consensus        28 ~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             cCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            489999999999999999999999999999999  456788999999999999999999999998543

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.76  E-value=4.9e-21  Score=129.20  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=57.4

Q ss_pred             CCccccccCCCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548           1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~--~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      +++|+||||+++|+.  ++||+|||+|++++||||.+. .++|++|++||++|+||.+|+.||.++
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~-~e~f~~I~~AYevL~d~~~R~~~~~~~   72 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFG   72 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc-HHHHHHHHHHHHHHCCHHHHHHhhhcc
Confidence            368999999999999  999999999999999999544 578999999999999999999998644

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.76  E-value=1.5e-20  Score=135.03  Aligned_cols=63  Identities=16%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             CccccccCCCCCC--HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           2 NHFEILNCNVNST--LEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         2 ~~Y~iLgv~~~as--~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      |+|+||||+++|+  .++||+|||++++++|||+++. .++|++|++||++|+||.+|+.||+.+.
T Consensus        12 d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~-~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           12 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C-CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC-HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            6899999999999  5999999999999999999544 5789999999999999999999999875

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.75  E-value=1.8e-19  Score=114.21  Aligned_cols=57  Identities=23%  Similarity=0.424  Sum_probs=52.4

Q ss_pred             CccccccCCCC--CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHH
Q psy7548           2 NHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKL   59 (134)
Q Consensus         2 ~~Y~iLgv~~~--as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~   59 (134)
                      ++|+||||+++  ++.++||+|||+|++++|||+.. +.++|++|++||++|+|+.+|..
T Consensus        12 ~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~-~~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A           12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CHHHHHHHHHHHHHHhhHHHHHH
Confidence            57999999999  99999999999999999999953 35789999999999999998875

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.75  E-value=3.8e-19  Score=128.66  Aligned_cols=64  Identities=23%  Similarity=0.432  Sum_probs=58.9

Q ss_pred             CCccccc------cCCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Q psy7548           1 MNHFEIL------NCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQL   64 (134)
Q Consensus         1 ~~~Y~iL------gv~~-~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   64 (134)
                      +|||+||      |+++ +|+.++||++||+|++++|||+.+.+.+.|+.|++||++|+||.+|..||..+
T Consensus        11 ~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A           11 STFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            5899999      4665 89999999999999999999995547889999999999999999999999988

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.73  E-value=4.6e-19  Score=114.42  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=51.0

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccChHHH
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKER   57 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d~~~R   57 (134)
                      ++|+||||+++|+.++||+|||+|++++|||++    +.+.++|+.|++||++|+|...|
T Consensus        17 ~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           17 EVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            579999999999999999999999999999993    34789999999999999987654

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.73  E-value=4.5e-19  Score=128.08  Aligned_cols=59  Identities=25%  Similarity=0.564  Sum_probs=54.3

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CH---HHHHHHHHHHHHHHHccChHHHHHH
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NS---EHQEMFLKINEAWNILKDEKERKLY   60 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~---~~~~~f~~i~~Ay~~L~d~~~R~~Y   60 (134)
                      |+|+||||+++|+.++||+|||++++++||||   .+   .+.++|+.|++||++|+||.+|+.|
T Consensus       118 d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             chhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            79999999999999999999999999999999   22   2788999999999999999998765

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.72  E-value=1.1e-18  Score=113.36  Aligned_cols=52  Identities=23%  Similarity=0.486  Sum_probs=47.7

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHHHHccC
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKD   53 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~------~~~~~f~~i~~Ay~~L~d   53 (134)
                      ++|++|||+++||.++||+|||++++++||||++      .+.++|+.|++||++|.+
T Consensus        34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999922      378899999999999974

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=2.4e-18  Score=114.59  Aligned_cols=54  Identities=19%  Similarity=0.343  Sum_probs=48.9

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHHHHHccChH
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS----------EHQEMFLKINEAWNILKDEK   55 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~~----------~~~~~f~~i~~Ay~~L~d~~   55 (134)
                      .|||+|||++. ||.++||+|||++++++||||++          .+.++|+.|++||++|+|+.
T Consensus        41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            38999999996 99999999999999999999932          35789999999999999985

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.1e-18  Score=108.34  Aligned_cols=55  Identities=31%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             CccccccCCC-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHH
Q psy7548           2 NHFEILNCNV-NSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKER   57 (134)
Q Consensus         2 ~~Y~iLgv~~-~as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R   57 (134)
                      ++|+||||++ +++.++||++||+|++++|||+. .+.+.|++|++||++|+++..|
T Consensus        15 ~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~-g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           15 EALQILNLTENTLTKKKLKEVHRKIMLANHPDKG-GSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGT-CCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHhhhhhc
Confidence            5799999999 79999999999999999999994 3456899999999999987644

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.67  E-value=3.6e-18  Score=145.00  Aligned_cols=68  Identities=38%  Similarity=0.592  Sum_probs=40.7

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++||.++||+|||+|++++|||+   .+.+.++|+.|++||++|+||.+|+.||+++....
T Consensus        21 ~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~   91 (780)
T 3apo_A           21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGL   91 (780)
T ss_dssp             --CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC-----
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhccccc
Confidence            489999999999999999999999999999999   45578899999999999999999999999887554

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=99.67  E-value=3e-17  Score=105.28  Aligned_cols=57  Identities=28%  Similarity=0.703  Sum_probs=53.1

Q ss_pred             ccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          73 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      .+++.+++++|.++++...|.|+||||+.|.|+.+++..|    ..++.|++|||||+|+.
T Consensus         3 ~vydeV~LeDm~~de~~~~y~ypCrCGd~F~IteedLe~g----e~iv~C~sCSL~IkV~y   59 (89)
T 2jr7_A            3 VFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENG----EDVATCPSCSLIIKVIY   59 (89)
T ss_dssp             SCSCEEETTTSEEETTTTEEEEECTTSSEEEEEHHHHHHT----CCEEECTTTCCEEEEEC
T ss_pred             cceeEEEHHHcEEcCCCCEEEEcCCCCCEEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence            4678899999999999999999999999999999999998    78999999999999975

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=99.66  E-value=6.5e-17  Score=102.67  Aligned_cols=58  Identities=28%  Similarity=0.689  Sum_probs=54.1

Q ss_pred             cccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          72 MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      +.+++.+++++|.++++...|.|+||||+.|.|+.+++..|    ..++.|++|||||+|+.
T Consensus         9 ~~~~dev~LeDm~~de~~~~y~y~CrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~   66 (83)
T 1wge_A            9 AVFHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIY   66 (83)
T ss_dssp             CCCSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEEC
T ss_pred             ceeeEEEEHHHceEccCCCEEEEeCCCCCEEEECHHHHhCC----CEEEECCCCceEEEEEe
Confidence            55788999999999999999999999999999999999998    78999999999999975

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=99.66  E-value=4e-17  Score=103.62  Aligned_cols=56  Identities=36%  Similarity=0.775  Sum_probs=52.8

Q ss_pred             cccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      +++.+++++|.++++...|.|+||||+.|.|+.+++..|    ..++.|++|||||+|+.
T Consensus         4 ~~dev~leDm~~de~~~~y~ypCrCGd~F~it~edL~~g----e~iv~C~sCSL~I~V~~   59 (83)
T 1yop_A            4 TYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVF   59 (83)
T ss_dssp             CSBCCBGGGSEEETTTTEEEEEETTTEEEEEEHHHHHTT----CCEEECSSSCCEEECBC
T ss_pred             eeeEEEHHHcEEcCCCCEEEEeCCCCCeEEECHHHHhCC----CEEEECCCCccEEEEEE
Confidence            678899999999999999999999999999999999998    88999999999999975

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.26  E-value=3e-12  Score=99.42  Aligned_cols=62  Identities=31%  Similarity=0.590  Sum_probs=53.1

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHHHHHccChHHHHHHHH
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--N----SEHQEMFLKINEAWNILKDEKERKLYES   62 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~----~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~   62 (134)
                      .++|.+||+.++++.++|+++|+++++++|||+  .    ..+.+.|+.|.+||++|+||++|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            379999999999999999999999999999999  2    3478899999999999999999999996

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.5e-10  Score=70.30  Aligned_cols=50  Identities=22%  Similarity=0.211  Sum_probs=43.3

Q ss_pred             cccccCCCC---CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccCh
Q psy7548           4 FEILNCNVN---STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDE   54 (134)
Q Consensus         4 Y~iLgv~~~---as~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~   54 (134)
                      |.||||+++   ++.++|+++||+|+...|||+. ++......|++|.++|...
T Consensus         7 ~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkG-GS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            7 CKILNIEESKGDLNMDKINNRFNYLFEVNDKEKG-GSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGT-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence            679999999   9999999999999999999983 4455677999999998643

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=93.91  E-value=0.017  Score=32.09  Aligned_cols=32  Identities=22%  Similarity=0.546  Sum_probs=25.3

Q ss_pred             eeC-CCCCeEEEecccccCCCCCCceeEeCCCCcceEEEe
Q psy7548          94 YPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEIT  132 (134)
Q Consensus        94 ~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~  132 (134)
                      |.| |||..|.-++-+...|       +.|+.|-..|...
T Consensus         4 Y~C~rCg~~fs~~el~~lP~-------IrCpyCGyrii~K   36 (48)
T 4ayb_P            4 YRCGKCWKTFTDEQLKVLPG-------VRCPYCGYKIIFM   36 (48)
T ss_dssp             -CCCCTTTTCCCCCSCCCSS-------SCCTTTCCSCEEC
T ss_pred             EEeeccCCCccHHHHhhCCC-------cccCccCcEEEEE
Confidence            788 9999888777777777       9999999887653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=92.92  E-value=0.069  Score=44.46  Aligned_cols=45  Identities=13%  Similarity=0.101  Sum_probs=35.4

Q ss_pred             CCccccccCCCCCCH--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q psy7548           1 MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNI   50 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~--~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~   50 (134)
                      +++|.+||++.+...  .+|+++||++++..+++     .+++..|..|..|
T Consensus       629 ~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          629 ASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-----RHRYTLVDMANKV  675 (681)
T ss_dssp             CSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-----HHHHHHHHHhccc
Confidence            368999999776544  67999999999977665     3678888888765

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}

Probab=91.05  E-value=0.18  Score=32.42  Aligned_cols=38  Identities=26%  Similarity=0.681  Sum_probs=31.9

Q ss_pred             eeeeeeC-CCC--CeEEEecccccCCCCCCceeEeCCCCcceEEE
Q psy7548          90 QMFTYPC-RCG--AEFCIEEQDTEGDSSDDNILIACDTCSLLLEI  131 (134)
Q Consensus        90 ~~~~~~c-rcG--~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v  131 (134)
                      -...+.| .|+  ....|+......|    .++|.|++|..+..|
T Consensus        10 ~~l~FTC~~C~tRs~k~iSk~aY~~G----vViv~C~gC~n~HlI   50 (100)
T 2e2z_A           10 MMIAFTCKKCNTRSSHTMSKQAYEKG----TVLISCPHCKVRHLI   50 (100)
T ss_dssp             EEEEEEETTTTEEEEEEEEHHHHHTS----EEEEECTTTCCEEES
T ss_pred             EEEEEEccCCCCcchhhcCHHHhhCC----EEEEEcCCCccceEe
Confidence            3456788 888  5888999999999    999999999988765

>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1

Probab=83.25  E-value=0.73  Score=33.01  Aligned_cols=29  Identities=28%  Similarity=0.690  Sum_probs=23.2

Q ss_pred             eeeeC-CCCCeEEEecccccCCCCCCceeEeCCCCcc
Q psy7548          92 FTYPC-RCGAEFCIEEQDTEGDSSDDNILIACDTCSL  127 (134)
Q Consensus        92 ~~~~c-rcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl  127 (134)
                      --..| +||+.|.+...+....       ..|+-|..
T Consensus       133 ~l~~C~~Cgg~fv~~~~~~~~~-------f~Cp~C~~  162 (192)
T 2avu_E          133 QLSSCNCCGGNFITHAHQPVGS-------FACSLCQP  162 (192)
T ss_dssp             EEEECTTTCCEEEEESSCCSSC-------CCCTTC--
T ss_pred             eeCcCCCCCCCeeCccCCCCCC-------CcCCCCCC
Confidence            35788 9999999999997666       79999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	134
d1ywsa1	82	g.41.17.1 (A:1-82) Diphthamide biosynthesis protei	6e-13
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-12
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	5e-12
d1wgea1	70	g.41.17.1 (A:8-77) DelGEF-interacting protein 1, D	6e-12
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	1e-11
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	2e-09
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	3e-09
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-08
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-06
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-04

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 82

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.9 bits (140), Expect = 6e-13
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 72  MNIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
           M+ Y  + + DM  + E+QMFTYPC CG  F I   D      +   +  C +CSL++++
Sbjct: 1   MSTYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMF----EGEKVAVCPSCSLMIDV 56

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (137), Expect = 2e-12
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS---------EHQEMFLKINEAWNILK 52
          + + IL  + ++ + ++K+ Y+ LIL YHPDK S         E  + F++I++AW IL 
Sbjct: 17 DWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILG 76

Query: 53 DEKERKLYESQ 63
          +E+ +K Y+ Q
Sbjct: 77 NEETKKKYDLQ 87

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.7 bits (134), Expect = 5e-12
 Identities = 15/65 (23%), Positives = 36/65 (55%), Gaps = 6/65 (9%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNS------EHQEMFLKINEAWNILKDEK 55
            ++ +      T E++K+ Y+  +L  HPDK +        + +F+++N+AW+  +++ 
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 56 ERKLY 60
          ++ LY
Sbjct: 94 QKPLY 98

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (133), Expect = 6e-12
 Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 74  IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEI 131
            +  V + D ++  +S+ + YPC CG  F I ++D E    +   +  C +CSL++++
Sbjct: 4   FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLE----NGEDVATCPSCSLIIKV 57

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 54.3 bits (130), Expect = 1e-11
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 1  MNHFEILNCNVNSTL--EEIKENYKSLILKYHPDKNSE--------HQEMFLKINEAWNI 50
          M++F +        L  + +   ++ L  +YHPDK +           +    IN+AW  
Sbjct: 1  MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 51 LKDEKERKLYESQL 64
          L+    R  Y   L
Sbjct: 61 LRHPLMRAEYLLSL 74

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 2e-09
 Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE---HQEMFLKINEAWNILKDEKERK 58
          +++EIL  +  +   EI++ YK L +KYHPD+N      +  F +I EA+ +L D ++R 
Sbjct: 4  DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63

Query: 59 LYE 61
           Y+
Sbjct: 64 AYD 66

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 48.5 bits (115), Expect = 3e-09
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 1  MNHFEILNC--NVNSTLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
              E+L     +      +++ YK   L  HPDK   H  +  ++N  W   K E    
Sbjct: 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHA-LMQELNSLWGTFKTEVYNL 69

Query: 59 LY 60
            
Sbjct: 70 RM 71

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-08
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 2  NHFEILNCNVNSTLEEIKENYKSLILKYHPDKNSE--HQEMFLKINEAWNILKDEKERKL 59
          ++++ L     ++ EEIK  Y+   L+YHPDKN E   +E F +I EA+++L D ++R++
Sbjct: 4  DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREI 63

Query: 60 Y 60
          +
Sbjct: 64 F 64

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (97), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 4  FEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKDEKERKL 59
            ++         E K+  + L LK+HPDKN        E+F  +    N L+ +     
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQ 78

Query: 60 YESQ 63
             +
Sbjct: 79 NADR 82

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 1  MNHFEILNCNVN--STLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERK 58
          +   ++L    +    +  +++ Y     ++HPDK    +E   K+N  +  ++D  +  
Sbjct: 8  LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKG-GDEEKMKKMNTLYKKMEDGVKYA 66

Query: 59 LYE 61
             
Sbjct: 67 HQP 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	134
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.88
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.84
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.84
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.78
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	99.7
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	99.7
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.68
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	85.67

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.3e-26  Score=141.26  Aligned_cols=67  Identities=33%  Similarity=0.613  Sum_probs=62.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      +|||+||||+++||.++||+||+++++++|||+   .+.+.+.|..|++||+||+||.+|..||.+|...
T Consensus         3 ~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            699999999999999999999999999999999   4567888999999999999999999999988653

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-25  Score=138.88  Aligned_cols=68  Identities=29%  Similarity=0.534  Sum_probs=64.0

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhhh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK--NSEHQEMFLKINEAWNILKDEKERKLYESQLLSQQ   68 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   68 (134)
                      +|||+||||+++||.++||+||+++++++|||+  .+.+.+.|..|++||+||+||.+|+.||+++....
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            699999999999999999999999999999999  66788899999999999999999999999877654

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.1e-24  Score=137.83  Aligned_cols=65  Identities=35%  Similarity=0.719  Sum_probs=60.3

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDK---------NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk---------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      +|||+||||+++|+.++||+||++|++++||||         .+.+.+.|+.|++||+||+||.+|+.||..+.
T Consensus        16 ~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~   89 (94)
T d1wjza_          16 KDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             cChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccC
Confidence            589999999999999999999999999999998         24577889999999999999999999998754

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1e-21  Score=122.17  Aligned_cols=65  Identities=25%  Similarity=0.409  Sum_probs=57.4

Q ss_pred             CCccccccCCCCC--CHHHHHHHHHHHHHHcCCCC--------CHHHHHHHHHHHHHHHHccChHHHHHHHHHHh
Q psy7548           1 MNHFEILNCNVNS--TLEEIKENYKSLILKYHPDK--------NSEHQEMFLKINEAWNILKDEKERKLYESQLL   65 (134)
Q Consensus         1 ~~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk--------~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   65 (134)
                      ||||+||||++.+  +.++||++|+++++++|||+        ...+...|..|++||+||+||.+|..|+..+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            6999999999865  58999999999999999999        12356889999999999999999999987653

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.84  E-value=8.1e-24  Score=141.24  Aligned_cols=65  Identities=15%  Similarity=0.241  Sum_probs=58.1

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHHHhhh
Q psy7548           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQLLSQ   67 (134)
Q Consensus         2 ~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   67 (134)
                      ++|+||||+++|  +.++||+|||+|++++||||++. .++|+.|++||+||+||.+|+.||..+...
T Consensus         9 ~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~-~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~   75 (114)
T d1gh6a_           9 QLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD-EEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   75 (114)
T ss_dssp             HHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT-TTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             HHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence            689999999999  78899999999999999999543 467999999999999999999999765443

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.78  E-value=8.6e-21  Score=118.65  Aligned_cols=61  Identities=21%  Similarity=0.370  Sum_probs=55.3

Q ss_pred             CccccccCCCCC--CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHccChHHHHHHHHH
Q psy7548           2 NHFEILNCNVNS--TLEEIKENYKSLILKYHPDKNSEHQEMFLKINEAWNILKDEKERKLYESQ   63 (134)
Q Consensus         2 ~~Y~iLgv~~~a--s~~~Ik~ay~~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~   63 (134)
                      ++|+||||++++  +.++||+||+++++++|||+.. +.++|++|++||++|+|+.+|..||..
T Consensus        12 ~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g-~~e~~~~in~Ay~~L~d~~~r~~~~~~   74 (79)
T d1fafa_          12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGG-SHALMQELNSLWGTFKTEVYNLRMNLG   74 (79)
T ss_dssp             HHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSC-CHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCC-CHHHHHHHHHHHHHHCCHHHHHHHccC
Confidence            689999999988  9999999999999999999943 356899999999999999999998754

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=3.6e-19  Score=115.50  Aligned_cols=59  Identities=25%  Similarity=0.561  Sum_probs=53.9

Q ss_pred             CccccccCCCCCCHHHHHHHHHHHHHHcCCCC--C----HHHHHHHHHHHHHHHHccChHHHHHH
Q psy7548           2 NHFEILNCNVNSTLEEIKENYKSLILKYHPDK--N----SEHQEMFLKINEAWNILKDEKERKLY   60 (134)
Q Consensus         2 ~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk--~----~~~~~~f~~i~~Ay~~L~d~~~R~~Y   60 (134)
                      ++|++|||+..+|.++||+||+++++.+||||  .    ..+...|+.|++||++|+||.+|+.|
T Consensus        34 ~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            57999999999999999999999999999999  1    23678899999999999999998766

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.1e-18  Score=103.02  Aligned_cols=56  Identities=29%  Similarity=0.731  Sum_probs=52.7

Q ss_pred             cccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          74 IYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      +++.+++++|.++++...|+++||||+.|.|+.+++..|    ..++.|++|||||+|+.
T Consensus         4 ~~dev~leD~~~dee~~~~~ypCpCGd~F~it~~dLe~g----e~V~~C~sCSL~ikVif   59 (70)
T d1wgea1           4 FHDEVEIEDFQYDEDSETYFYPCPCGDNFAITKEDLENG----EDVATCPSCSLIIKVIY   59 (70)
T ss_dssp             CSCEEEGGGSCCBTTTTEEEECCSSSSCEEEEHHHHHTT----CCEEECTTTCCEEEEEC
T ss_pred             eEEEEEeeeeeEeCCCCEEEeCCCCCCeEEECHHHHhCC----CeEEeCCCCceEEEEEE
Confidence            567889999999999999999999999999999999999    88999999999999974

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=3.5e-18  Score=106.26  Aligned_cols=57  Identities=35%  Similarity=0.767  Sum_probs=53.4

Q ss_pred             ccccccccccccccCCceeeeeeCCCCCeEEEecccccCCCCCCceeEeCCCCcceEEEee
Q psy7548          73 NIYKSVSLSDMEHKGESQMFTYPCRCGAEFCIEEQDTEGDSSDDNILIACDTCSLLLEITA  133 (134)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~crcG~~~~v~~~~~~~g~~~~~~~v~C~~CSl~i~v~~  133 (134)
                      .+++.+++++|.|+++...|+++||||+.|.|+.++|..|    ..++.|++|||||+|+.
T Consensus         2 s~ydev~LeDm~~ded~~~~~ypCrCGd~F~it~~dLe~g----e~v~~C~sCSL~IrVif   58 (82)
T d1ywsa1           2 STYDEIEIEDMTFEPENQMFTYPCPCGDRFQIYLDDMFEG----EKVAVCPSCSLMIDVVF   58 (82)
T ss_dssp             CCCCEEETTTSEEETTTTEEEECCSSSSCEEEEHHHHHTT----CCEEEETTTTEEEEEEC
T ss_pred             ccccEEEecceEEeCCCCEEEeccccCCeEEEcHHHHhCC----CeEEeCCCCceEEEEEe
Confidence            3578899999999999999999999999999999999999    88999999999999974

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.4e-18  Score=110.47  Aligned_cols=53  Identities=26%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             CCccccccCCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHHHHccC
Q psy7548           1 MNHFEILNCNVNSTLEEIKENYKSLILKYHPDKN----SEHQEMFLKINEAWNILKD   53 (134)
Q Consensus         1 ~~~Y~iLgv~~~as~~~Ik~ay~~l~~~~HPDk~----~~~~~~f~~i~~Ay~~L~d   53 (134)
                      +++|+||||+.+||.++||+||++|++++|||++    ..+.++|+.|++||++|++
T Consensus        16 ~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~   72 (88)
T d1iura_          16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK   72 (88)
T ss_dssp             HHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999992    3578899999999999974

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.67  E-value=1.4  Score=23.88  Aligned_cols=50  Identities=10%  Similarity=0.310  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHHHHc-cCh-HHHHHHHHHHhh
Q psy7548          17 EIKENYKSLILKYHPDKNSEHQEMFLKI---NEAWNIL-KDE-KERKLYESQLLS   66 (134)
Q Consensus        17 ~Ik~ay~~l~~~~HPDk~~~~~~~f~~i---~~Ay~~L-~d~-~~R~~Yd~~~~~   66 (134)
                      |.++||++|.+..+-+-.-.=++..+.|   ..-|..| +|| ++++.|+.+..+
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~   55 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN   55 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhc
Confidence            4688999999888766533333444433   3689999 688 788999988753