Psyllid ID: psy7557

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930------
MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILEGGEEVVEEEEGGEDGMEILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF
cHHHHHHHccccccccccccccccccccccHHHHcccHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccEEEEccHHHHHHHHcccccccccEEEEccccccccccccHHHHHHHHccccccccEEEEcccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEEcccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEcccccccccccccccccccccccccEEEEEEcccccccHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccEEEEccHHHHHHccccccHHHHHHHcccccccccccccHHHHHHHHHcHHcccccccccccccccccccHHHccccHHHHHHHHHHccccEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccEEEEccHHHHHHHHcccccccccEEEEccccccccccccHHHHHHHHccccccccEEEEcccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEEcccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHcccccEEccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEccccccccccccccccccccc
cccHcccccccccccHHcccccccccccccHHHHHccHHHHHHHHHHcccEEEEEcccccccccccccccccccccHHHHccccHHHHHHHHHcccccccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHEEEcccccccccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHcccEEEEEcHHHHHHHHcccccccccccEEEEccHHHHHccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHccccEEEEcccccHHccccEEEEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHcccccEEEEEcHHHcccccccEEEEEEEcccccHHHHEEEccccccccccEEEEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHcccccccccccccHHHHHccHHHHHHHHHHcccEEEEccccccccccccccccccccccHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHEEEcccccccccccccEEEEEccHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHHHHcccEEEEEcHHHHHHHHcccccccccccEEEEccHHHHHccccHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHccccEEEEcccEEEEHcccEEEEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccEEEHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHccccEEEEEEcHHHccccccccEEEEEccccccHHHHHEEccccccc
meelmalsdrkerdkwarepKIIKNvykedpevanmtPEQVEAFRKKNNDISVSVvtsdgqidenpdfqipnpvtsFKQAFQHYPEILRQLenlsfttpspiqaqawpilmsghdmigiaqtgtgktfAFLLPALIHthlqttpiseragpsvlvmaptRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMldlgfepqinktsiyinpnrqtvmtsaTWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQyrkscslygdlsqEDREIALEDITSGYARICVAtdvasrgldvpdlthvinydfpsHIEEYVHRVgrtgragksgesitlmtrkdwshaheiipileegghesyMIWRRDSRIALHVILEggeevveeeeggedgMEILVGVDLEVVMEGEEEGEVAIQMINKidlgrhidpeptmEELMALSDRKerdkwarepKIIKNvykedpevanmtPEQVEAFRKKNNDISVSVvtsdgqidenpdfqipnpvtsFKQAFQHYPEILRQLenlsfttpspiqaqawpilmsghdmigiaqtgtgktfAFLLPALIHthlqttpiseragpsvlvmaptRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMldlgfepqinktsiyinpnrqtvmtsaTWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQyrkscslygdlsqEDREIALEDITSGYARICVAtdvasrgldvpdlthvinydfpsHIEEYVHRVGRTGEF
meelmalsdrkerdkwarepkiiknvykedpevaNMTPEQVEAFRKKNNDISVSVVTsdgqidenpDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIerevnkidykgLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDlgfepqinktsiyinpnrqtvMTSATWNKDVQRVAKKYMVNPVKvnvgsldlaathtvtqkiiildedekKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDvasrgldvpdLTHVINYDFPSHIEEYVHRVgrtgragksgesitlmtrkdwshaHEIIPILEEGGHESYMIWRRDSRIALHVILEGGeevveeeeggedgMEILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELMalsdrkerdkwarepkiiknvykedpevaNMTPEQVEAFRKKNNDISVSVVTsdgqidenpDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIerevnkidykgLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDlgfepqinktsiyinpnrqtvMTSATWNKDVQRVAKKYMVNPVKvnvgsldlaathtvtqkiiildedekKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDvasrgldvpdLTHVINYDFPSHIEEYVHRVGRTGEF
MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILeggeevveeeeggeDGMEILvgvdlevvmegeeegevAIQMINKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF
*********************************************************************IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILE*****************ILVGVDLEVVMEGEEEGEVAIQMINKIDLGR****************************************************************************IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRV******
****************AREPKIIKNVYKEDPEVA*MTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH**********GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALH**LE******EE************************************************EELMA**********AREPKIIKNVYKEDPEVA*MTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTH**********GPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGE*
**************KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILEGGE*********EDGMEILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF
*****ALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHV******************************************************PEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGR****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDSRIALHVILEGGEEVVEEEEGGEDGMEILVGVDLEVVMEGEEEGEVAIQMINKIDLGRHIDPEPTMEELMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKELEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGEF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query936 2.2.26 [Sep-21-2011]
Q9NXZ2648 Probable ATP-dependent RN yes N/A 0.452 0.654 0.501 1e-119
Q86TM3631 Probable ATP-dependent RN no N/A 0.455 0.675 0.459 1e-109
Q5QMN3494 DEAD-box ATP-dependent RN yes N/A 0.438 0.829 0.431 5e-98
Q59LU0562 ATP-dependent RNA helicas N/A N/A 0.435 0.725 0.428 3e-97
Q9C718501 DEAD-box ATP-dependent RN yes N/A 0.433 0.810 0.433 5e-96
Q755N4557 ATP-dependent RNA helicas yes N/A 0.455 0.764 0.408 6e-96
Q7SBC6562 ATP-dependent RNA helicas N/A N/A 0.459 0.765 0.395 1e-95
A6RGE3542 ATP-dependent RNA helicas N/A N/A 0.435 0.752 0.425 1e-95
Q6C4D4552 ATP-dependent RNA helicas yes N/A 0.438 0.742 0.430 2e-95
Q5B0J9563 ATP-dependent RNA helicas yes N/A 0.440 0.731 0.417 9e-95
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43 PE=2 SV=2 Back     alignment and function desciption
 Score =  431 bits (1109), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/431 (50%), Positives = 294/431 (68%), Gaps = 7/431 (1%)

Query: 12  ERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIP 71
           ++ KWA  P I KN YKE    + M+  + +++RK+N +I+   +  DG+  + P   IP
Sbjct: 184 QKTKWADLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDL-KDGE--KRP---IP 237

Query: 72  NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFL 131
           NP  +F  AFQ YPE++  ++   F  P+PIQ+QAWPI++ G D+IG+AQTGTGKT  +L
Sbjct: 238 NPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYL 297

Query: 132 LPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEP 191
           +P  IH  LQ +   +R  P +LV+ PTRELA Q+E E  K  YKGL++VCVYGG   + 
Sbjct: 298 MPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDE 357

Query: 192 QLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYI 251
           Q+E++++G  I+IATPGRLND      ++LK ++++VLDEAD+MLD+GFEPQI K  + +
Sbjct: 358 QIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDV 417

Query: 252 NPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWL 311
            P+RQTVMTSATW   V R+A+ Y+  P+ V VG+LDL A  +V Q II+  E+EK   +
Sbjct: 418 RPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHM 477

Query: 312 MEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSG 371
             F  +M    DKV+VF+ RKA    +SSDL        SL+GD  Q DRE ALE+  +G
Sbjct: 478 QTFLQSMSST-DKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTG 536

Query: 372 YARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDW 431
             RI +ATD+ASRGLDV D+THV N+DFP +IEEYVHR+GRTGRAG++G SIT +TR DW
Sbjct: 537 KVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDW 596

Query: 432 SHAHEIIPILE 442
             A E+I ILE
Sbjct: 597 RVASELINILE 607

Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|Q86TM3|DDX53_HUMAN Probable ATP-dependent RNA helicase DDX53 OS=Homo sapiens GN=DDX53 PE=1 SV=3 Back     alignment and function description
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2 Back     alignment and function description
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=DBP2 PE=3 SV=2 Back     alignment and function description
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1 Back     alignment and function description
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2 PE=3 SV=2 Back     alignment and function description
>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=dbp-2 PE=3 SV=2 Back     alignment and function description
>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1 Back     alignment and function description
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DBP2 PE=3 SV=1 Back     alignment and function description
>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query936
307188310677 Probable ATP-dependent RNA helicase DDX4 0.470 0.649 0.578 1e-151
340718889662 PREDICTED: probable ATP-dependent RNA he 0.466 0.660 0.603 1e-150
350410178704 PREDICTED: probable ATP-dependent RNA he 0.465 0.619 0.595 1e-149
332028589660 Putative ATP-dependent RNA helicase DDX4 0.463 0.657 0.591 1e-148
383864227619 PREDICTED: probable ATP-dependent RNA he 0.466 0.705 0.589 1e-146
322792753643 hypothetical protein SINV_00105 [Solenop 0.462 0.673 0.583 1e-146
328781103626 PREDICTED: probable ATP-dependent RNA he 0.466 0.698 0.583 1e-146
380012841681 PREDICTED: probable ATP-dependent RNA he 0.466 0.641 0.580 1e-145
345481282698 PREDICTED: probable ATP-dependent RNA he 0.467 0.627 0.590 1e-144
307204940633 Probable ATP-dependent RNA helicase DDX4 0.462 0.684 0.580 1e-142
>gi|307188310|gb|EFN73102.1| Probable ATP-dependent RNA helicase DDX43 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/455 (57%), Positives = 336/455 (73%), Gaps = 15/455 (3%)

Query: 11  KERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPD-FQ 69
           +++++WA  P IIKN YKEDP VANM+  ++   +K NN+I V  V  +   +E  D  +
Sbjct: 194 RQKERWATLPPIIKNFYKEDPAVANMSKAKIAELKKINNNIEVKYVFEN---EEGSDEIK 250

Query: 70  IPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFA 129
           IPN + +F+QAFQ+YPEILR+++   FT PSPIQ QAWPIL+SG D+IGIAQTGTGKT A
Sbjct: 251 IPNLIETFEQAFQNYPEILREIQKQGFTKPSPIQCQAWPILLSGQDLIGIAQTGTGKTLA 310

Query: 130 FLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEI 189
           FLLPALIH   Q TP  ER GP+VLVMAPTRELA QIE+EV K  Y+G+KAVCVYGG   
Sbjct: 311 FLLPALIHIDGQITPRDERPGPNVLVMAPTRELALQIEKEVGKYSYRGIKAVCVYGGGNR 370

Query: 190 EPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSI 249
           + Q+  + +G  I+IATPGRLND V    +++ AV++++LDEADRMLD+GFEPQI KT +
Sbjct: 371 KEQINIVTKGVQIVIATPGRLNDLVQAGVLNVSAVTYLILDEADRMLDMGFEPQIRKTLL 430

Query: 250 YINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKD 309
            + P+RQTVMTSATW + V+R+A+ YM NP++V VGSLDLAA HTVTQKI +++EDEK D
Sbjct: 431 GVRPDRQTVMTSATWPQGVRRLAQSYMKNPIQVCVGSLDLAAVHTVTQKICMINEDEKLD 490

Query: 310 WLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDIT 369
            + +FF  M    DKV+VF G+KA V  +SSDLA       S++GD  Q DRE ALED+ 
Sbjct: 491 MMHQFFREMG-SYDKVIVFFGKKAKVDDISSDLALSKIDCQSIHGDREQADREQALEDLK 549

Query: 370 SGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRK 429
           +G  +I +ATDVASRG+D+ D+THV+NYDFP  IEEYVHRVGRTGRAG++GESIT MTR+
Sbjct: 550 TGAVQILLATDVASRGIDIEDITHVLNYDFPKDIEEYVHRVGRTGRAGRTGESITFMTRQ 609

Query: 430 DWSHAHEIIPILEEGGH----------ESYMIWRR 454
           DW HA E+I ILEE             E Y +W++
Sbjct: 610 DWHHAKELINILEEANQEVPEELYKMAERYEVWKQ 644

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340718889|ref|XP_003397895.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350410178|ref|XP_003488972.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332028589|gb|EGI68626.1| Putative ATP-dependent RNA helicase DDX43 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383864227|ref|XP_003707581.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322792753|gb|EFZ16586.1| hypothetical protein SINV_00105 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328781103|ref|XP_394925.4| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380012841|ref|XP_003690483.1| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Apis florea] Back     alignment and taxonomy information
>gi|345481282|ref|XP_001602397.2| PREDICTED: probable ATP-dependent RNA helicase DDX43-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307204940|gb|EFN83479.1| Probable ATP-dependent RNA helicase DDX43 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query936
FB|FBgn0037549703 CG7878 [Drosophila melanogaste 0.458 0.610 0.544 4.3e-125
ZFIN|ZDB-GENE-080204-77719 ddx43 "DEAD (Asp-Glu-Ala-Asp) 0.461 0.600 0.533 6.7e-120
UNIPROTKB|F1NVJ6642 DDX43 "Uncharacterized protein 0.451 0.658 0.519 5.6e-116
UNIPROTKB|E1BII7647 DDX43 "Uncharacterized protein 0.447 0.647 0.504 9.7e-112
UNIPROTKB|F1S0I6650 DDX43 "Uncharacterized protein 0.449 0.647 0.519 1.2e-111
UNIPROTKB|F1SQ03630 LOC100524536 "Uncharacterized 0.452 0.673 0.498 1.8e-110
UNIPROTKB|G3MYF0608 LOC100300937 "Uncharacterized 0.452 0.697 0.497 7.8e-110
UNIPROTKB|I3LHW0621 I3LHW0 "Uncharacterized protei 0.451 0.681 0.496 3.4e-109
UNIPROTKB|Q9NXZ2648 DDX43 "Probable ATP-dependent 0.452 0.654 0.501 4.3e-109
UNIPROTKB|F1NQ09451 DDX43 "Uncharacterized protein 0.443 0.920 0.505 2.2e-105
FB|FBgn0037549 CG7878 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 237/435 (54%), Positives = 312/435 (71%)

Query:    15 KWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPV 74
             +W++ P + KN YKE PEVAN+T  ++E  R++NN I+VS V    + + +P   IPNPV
Sbjct:   224 RWSKCPPLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPP--IPNPV 281

Query:    75 TSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPA 134
              +F+Q F  YP++L ++  + F+ PSPIQ+QAWPIL+ GHDMIGIAQTGTGKT AFLLP 
Sbjct:   282 WTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPG 341

Query:   135 LIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKGLKAVCVYGGKEIEPQLE 194
             +IHT  Q+TP   R G +VLV+APTRELA QIE EV K  ++G+KAVCVYGG     Q+ 
Sbjct:   342 MIHTEYQSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQIS 401

Query:   195 KIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPN 254
              +  G  I+I TPGRLND +    ID+  ++++VLDEADRMLD+GFEPQI K  + I P+
Sbjct:   402 DLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPD 461

Query:   255 RQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDED-EKKDWLME 313
             RQT+MTSATW   V+R+A+ YM NP++V VGSLDLAATH+V Q I ++++D +K + +  
Sbjct:   462 RQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITS 521

Query:   314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-YRKSCSLYGDLSQEDREIALEDITSGY 372
             F  NM    DK+++F GRK     +SS+L    +   C ++G+  Q DRE A+ DI SG 
Sbjct:   522 FVKNMSST-DKIIIFCGRKVRADDLSSELTLDGFMTQC-IHGNRDQMDREQAIADIKSGV 579

Query:   373 ARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMTRKDWS 432
              RI VATDVASRGLD+ D+THVINYDFP +IEEYVHRVGRTGRAG+ G SI+  TR+DW+
Sbjct:   580 VRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWA 639

Query:   433 HAHEIIPILEEGGHE 447
              A E+I IL+E   E
Sbjct:   640 MAKELIEILQEAEQE 654
GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS
GO:0004386 "helicase activity" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
ZFIN|ZDB-GENE-080204-77 ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 43" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVJ6 DDX43 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BII7 DDX43 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S0I6 DDX43 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SQ03 LOC100524536 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|G3MYF0 LOC100300937 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LHW0 I3LHW0 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NXZ2 DDX43 "Probable ATP-dependent RNA helicase DDX43" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQ09 DDX43 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9NXZ2DDX43_HUMAN3, ., 6, ., 4, ., 1, 30.50110.45290.6543yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.6.4.130.737
3rd Layer3.6.40.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query936
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 1e-131
COG0513513 COG0513, SrmB, Superfamily II DNA and RNA helicase 1e-125
PTZ00110545 PTZ00110, PTZ00110, helicase; Provisional 1e-124
COG0513 513 COG0513, SrmB, Superfamily II DNA and RNA helicase 1e-117
cd00268203 cd00268, DEADc, DEAD-box helicases 1e-88
cd00268203 cd00268, DEADc, DEAD-box helicases 2e-88
PRK04837423 PRK04837, PRK04837, ATP-dependent RNA helicase Rhl 2e-81
PRK10590456 PRK10590, PRK10590, ATP-dependent RNA helicase Rhl 2e-77
PRK11776460 PRK11776, PRK11776, ATP-dependent RNA helicase Dbp 9e-77
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 3e-76
PRK04837423 PRK04837, PRK04837, ATP-dependent RNA helicase Rhl 8e-75
PRK10590 456 PRK10590, PRK10590, ATP-dependent RNA helicase Rhl 4e-72
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 1e-71
PRK01297475 PRK01297, PRK01297, ATP-dependent RNA helicase Rhl 6e-71
PRK11776 460 PRK11776, PRK11776, ATP-dependent RNA helicase Dbp 4e-70
PRK11192434 PRK11192, PRK11192, ATP-dependent RNA helicase Srm 3e-66
PRK11634629 PRK11634, PRK11634, ATP-dependent RNA helicase Dea 1e-65
PRK11634 629 PRK11634, PRK11634, ATP-dependent RNA helicase Dea 8e-62
PRK04537572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 2e-61
PRK04537 572 PRK04537, PRK04537, ATP-dependent RNA helicase Rhl 4e-58
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 2e-57
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 4e-57
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 2e-56
pfam00270169 pfam00270, DEAD, DEAD/DEAH box helicase 2e-56
PLN00206518 PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel 4e-54
PTZ00424401 PTZ00424, PTZ00424, helicase 45; Provisional 8e-53
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 2e-51
smart00487201 smart00487, DEXDc, DEAD-like helicases superfamily 4e-51
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 3e-39
cd00046144 cd00046, DEXDc, DEAD-like helicases superfamily 9e-39
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 3e-32
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 2e-27
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 6e-25
smart0049082 smart00490, HELICc, helicase superfamily c-termina 4e-23
pfam0027178 pfam00271, Helicase_C, Helicase conserved C-termin 1e-22
smart0049082 smart00490, HELICc, helicase superfamily c-termina 7e-21
COG1205851 COG1205, COG1205, Distinct helicase family with a 9e-14
COG0514590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 2e-13
COG1201814 COG1201, Lhr, Lhr-like helicases [General function 7e-12
COG1205 851 COG1205, COG1205, Distinct helicase family with a 8e-12
COG1201 814 COG1201, Lhr, Lhr-like helicases [General function 1e-11
TIGR01389591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 1e-10
COG0514 590 COG0514, RecQ, Superfamily II DNA helicase [DNA re 6e-09
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 9e-09
COG1204 766 COG1204, COG1204, Superfamily II helicase [General 5e-08
TIGR04121803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 9e-08
TIGR04121 803 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA 1e-07
COG1061442 COG1061, SSL2, DNA or RNA helicases of superfamily 2e-07
COG1204766 COG1204, COG1204, Superfamily II helicase [General 2e-07
TIGR01389 591 TIGR01389, recQ, ATP-dependent DNA helicase RecQ 8e-07
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 8e-07
TIGR00614470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 1e-06
TIGR03817742 TIGR03817, DECH_helic, helicase/secretion neighbor 2e-06
TIGR03817 742 TIGR03817, DECH_helic, helicase/secretion neighbor 2e-06
TIGR00614 470 TIGR00614, recQ_fam, ATP-dependent DNA helicase, R 3e-05
PRK13766773 PRK13766, PRK13766, Hef nuclease; Provisional 4e-05
COG1111542 COG1111, MPH1, ERCC4-like helicases [DNA replicati 5e-04
PRK11057607 PRK11057, PRK11057, ATP-dependent DNA helicase Rec 0.002
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 0.003
COG1110 1187 COG1110, COG1110, Reverse gyrase [DNA replication, 0.003
PRK09751 1490 PRK09751, PRK09751, putative ATP-dependent helicas 0.004
COG1110 1187 COG1110, COG1110, Reverse gyrase [DNA replication, 0.004
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information 
 Score =  406 bits (1045), Expect = e-131
 Identities = 189/443 (42%), Positives = 268/443 (60%), Gaps = 20/443 (4%)

Query: 6   ALSDRKERDKWAREP--KIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQID 63
            L  R +   W         KN YKE PEV+ ++ ++V+  RK+     ++++  +    
Sbjct: 71  TLGKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKE---ITIIAGEN--- 124

Query: 64  ENPDFQIPNPVTSF-KQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQT 122
                 +P PV SF   +F  Y  IL+ L+N  FT P+PIQ Q WPI +SG DMIGIA+T
Sbjct: 125 ------VPKPVVSFEYTSFPDY--ILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAET 176

Query: 123 GTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYKG-LKAV 181
           G+GKT AFLLPA++H + Q   +    GP VLV+APTRELA QI  + NK      ++  
Sbjct: 177 GSGKTLAFLLPAIVHINAQPL-LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNT 235

Query: 182 CVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFE 241
             YGG     Q+  +R G  ILIA PGRL DF+     +L+ V+++VLDEADRMLD+GFE
Sbjct: 236 VAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFE 295

Query: 242 PQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVN-PVKVNVGSLDLAATHTVTQKII 300
           PQI K    I P+RQT+M SATW K+VQ +A+      PV VNVGSLDL A H + Q++ 
Sbjct: 296 PQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVF 355

Query: 301 ILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQED 360
           +++E EK+  L      +  + DK+++F+  K     ++ +L      +  ++GD  QE+
Sbjct: 356 VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEE 415

Query: 361 REIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSG 420
           R   L +  +G + I +ATDVASRGLDV D+ +VIN+DFP+ IE+YVHR+GRTGRAG  G
Sbjct: 416 RTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG 475

Query: 421 ESITLMTRKDWSHAHEIIPILEE 443
            S T +T   +  A +++ +L E
Sbjct: 476 ASYTFLTPDKYRLARDLVKVLRE 498

Length = 545
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional Back     alignment and domain information
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases Back     alignment and domain information
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase Back     alignment and domain information
>gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain Back     alignment and domain information
>gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated Back     alignment and domain information
>gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] Back     alignment and domain information
>gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional Back     alignment and domain information
>gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 936
KOG0336|consensus629 100.0
KOG0331|consensus519 100.0
KOG0336|consensus629 100.0
KOG0333|consensus673 100.0
KOG0339|consensus731 100.0
KOG0331|consensus519 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0330|consensus476 100.0
KOG0341|consensus610 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
KOG0328|consensus400 100.0
COG0513513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
KOG0333|consensus673 100.0
KOG0335|consensus482 100.0
KOG0330|consensus476 100.0
KOG0338|consensus691 100.0
KOG0334|consensus997 100.0
KOG0341|consensus610 100.0
PTZ00110545 helicase; Provisional 100.0
KOG0340|consensus442 100.0
KOG0342|consensus543 100.0
KOG0339|consensus 731 100.0
KOG0345|consensus567 100.0
KOG0326|consensus459 100.0
KOG0338|consensus 691 100.0
KOG0328|consensus400 100.0
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0343|consensus758 100.0
PLN00206518 DEAD-box ATP-dependent RNA helicase; Provisional 100.0
PRK10590456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK11776460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK11634629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK04537572 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0348|consensus708 100.0
KOG0346|consensus569 100.0
KOG0335|consensus482 100.0
KOG0343|consensus 758 100.0
KOG0951|consensus 1674 100.0
KOG0334|consensus 997 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
KOG0340|consensus442 100.0
KOG0342|consensus 543 100.0
KOG0345|consensus 567 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0326|consensus459 100.0
KOG0347|consensus731 100.0
PRK04837423 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0952|consensus1230 100.0
PRK10590 456 ATP-dependent RNA helicase RhlE; Provisional 100.0
PRK11776 460 ATP-dependent RNA helicase DbpA; Provisional 100.0
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 100.0
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0346|consensus 569 100.0
KOG0347|consensus 731 100.0
KOG0332|consensus477 100.0
PRK11192434 ATP-dependent RNA helicase SrmB; Provisional 100.0
KOG0348|consensus 708 100.0
KOG0344|consensus593 100.0
KOG0327|consensus397 100.0
PRK01297475 ATP-dependent RNA helicase RhlB; Provisional 100.0
KOG0337|consensus529 100.0
KOG4284|consensus980 100.0
KOG0332|consensus477 100.0
PTZ00424401 helicase 45; Provisional 100.0
KOG0350|consensus620 100.0
TIGR03817742 DECH_helic helicase/secretion neighborhood putativ 100.0
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
KOG0327|consensus397 100.0
KOG4284|consensus 980 100.0
KOG0337|consensus 529 100.0
TIGR03817 742 DECH_helic helicase/secretion neighborhood putativ 100.0
TIGR00614470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
TIGR00580926 mfd transcription-repair coupling factor (mfd). Al 100.0
KOG0344|consensus 593 100.0
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 100.0
KOG0350|consensus620 100.0
KOG0329|consensus387 100.0
PLN03137 1195 ATP-dependent DNA helicase; Q4-like; Provisional 100.0
PRK106891147 transcription-repair coupling factor; Provisional 100.0
PRK02362737 ski2-like helicase; Provisional 100.0
PRK13767876 ATP-dependent helicase; Provisional 100.0
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
TIGR00614 470 recQ_fam ATP-dependent DNA helicase, RecQ family. 100.0
PRK00254720 ski2-like helicase; Provisional 100.0
PRK13767 876 ATP-dependent helicase; Provisional 100.0
PRK02362 737 ski2-like helicase; Provisional 100.0
KOG0329|consensus387 100.0
TIGR02621844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 100.0
PRK00254 720 ski2-like helicase; Provisional 100.0
PRK10917681 ATP-dependent DNA helicase RecG; Provisional 100.0
PRK01172674 ski2-like helicase; Provisional 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 100.0
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
COG1201814 Lhr Lhr-like helicases [General function predictio 100.0
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 100.0
PRK01172 674 ski2-like helicase; Provisional 100.0
COG1201 814 Lhr Lhr-like helicases [General function predictio 100.0
PRK10689 1147 transcription-repair coupling factor; Provisional 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
TIGR00580 926 mfd transcription-repair coupling factor (mfd). Al 100.0
COG1204766 Superfamily II helicase [General function predicti 100.0
PRK09751 1490 putative ATP-dependent helicase Lhr; Provisional 100.0
PHA02653675 RNA helicase NPH-II; Provisional 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
COG0514 590 RecQ Superfamily II DNA helicase [DNA replication, 100.0
PRK14701 1638 reverse gyrase; Provisional 100.0
PRK10917 681 ATP-dependent DNA helicase RecG; Provisional 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
COG1202830 Superfamily II helicase, archaea-specific [General 100.0
PRK09401 1176 reverse gyrase; Reviewed 100.0
COG1204 766 Superfamily II helicase [General function predicti 100.0
TIGR00643630 recG ATP-dependent DNA helicase RecG. 100.0
TIGR01970819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
COG11971139 Mfd Transcription-repair coupling factor (superfam 100.0
KOG0349|consensus725 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
KOG0352|consensus641 100.0
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 100.0
PRK14701 1638 reverse gyrase; Provisional 100.0
PRK11664812 ATP-dependent RNA helicase HrpB; Provisional 100.0
PRK09200790 preprotein translocase subunit SecA; Reviewed 100.0
PHA02653 675 RNA helicase NPH-II; Provisional 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
COG1202 830 Superfamily II helicase, archaea-specific [General 100.0
KOG0349|consensus 725 100.0
TIGR03714762 secA2 accessory Sec system translocase SecA2. Memb 100.0
KOG0351|consensus941 100.0
COG1111542 MPH1 ERCC4-like helicases [DNA replication, recomb 100.0
COG1200677 RecG RecG-like helicase [DNA replication, recombin 100.0
TIGR00963745 secA preprotein translocase, SecA subunit. The pro 100.0
PHA02558501 uvsW UvsW helicase; Provisional 100.0
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 100.0
TIGR01970 819 DEAH_box_HrpB ATP-dependent helicase HrpB. This mo 100.0
KOG0952|consensus 1230 100.0
TIGR01054 1171 rgy reverse gyrase. Generally, these gyrases are e 100.0
PRK12898656 secA preprotein translocase subunit SecA; Reviewed 100.0
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 100.0
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 100.0
COG1205851 Distinct helicase family with a unique C-terminal 100.0
KOG0351|consensus 941 100.0
PRK13766773 Hef nuclease; Provisional 100.0
KOG0354|consensus746 100.0
KOG0352|consensus 641 100.0
KOG0354|consensus 746 100.0
PRK09200 790 preprotein translocase subunit SecA; Reviewed 100.0
COG1205 851 Distinct helicase family with a unique C-terminal 100.0
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 100.0
PRK13766 773 Hef nuclease; Provisional 100.0
KOG0353|consensus695 100.0
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 100.0
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 100.0
TIGR00603732 rad25 DNA repair helicase rad25. All proteins in t 100.0
PRK05580679 primosome assembly protein PriA; Validated 99.98
KOG0353|consensus 695 99.97
TIGR00603 732 rad25 DNA repair helicase rad25. All proteins in t 99.97
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.97
KOG0951|consensus 1674 99.97
PRK11131 1294 ATP-dependent RNA helicase HrpA; Provisional 99.97
PRK13104896 secA preprotein translocase subunit SecA; Reviewed 99.97
PRK05580 679 primosome assembly protein PriA; Validated 99.97
KOG0947|consensus1248 99.96
PRK12904830 preprotein translocase subunit SecA; Reviewed 99.96
PRK09694 878 helicase Cas3; Provisional 99.96
PRK12899970 secA preprotein translocase subunit SecA; Reviewed 99.96
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.96
PRK09694878 helicase Cas3; Provisional 99.96
TIGR00595505 priA primosomal protein N'. All proteins in this f 99.96
cd00268203 DEADc DEAD-box helicases. A diverse family of prot 99.96
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.96
PRK12906796 secA preprotein translocase subunit SecA; Reviewed 99.96
KOG0948|consensus1041 99.96
COG1061442 SSL2 DNA or RNA helicases of superfamily II [Trans 99.96
COG1200677 RecG RecG-like helicase [DNA replication, recombin 99.96
COG45811041 Superfamily II RNA helicase [DNA replication, reco 99.96
TIGR01967 1283 DEAH_box_HrpA ATP-dependent helicase HrpA. This mo 99.96
KOG0947|consensus 1248 99.95
PRK04914956 ATP-dependent helicase HepA; Validated 99.95
TIGR00595 505 priA primosomal protein N'. All proteins in this f 99.95
KOG0950|consensus1008 99.95
COG4581 1041 Superfamily II RNA helicase [DNA replication, reco 99.94
PRK13107908 preprotein translocase subunit SecA; Reviewed 99.94
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 99.94
KOG0948|consensus 1041 99.94
PRK04914 956 ATP-dependent helicase HepA; Validated 99.94
PRK114481123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.93
COG1197 1139 Mfd Transcription-repair coupling factor (superfam 99.93
PRK12904 830 preprotein translocase subunit SecA; Reviewed 99.93
PRK12899 970 secA preprotein translocase subunit SecA; Reviewed 99.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.93
PRK11448 1123 hsdR type I restriction enzyme EcoKI subunit R; Pr 99.93
COG4098441 comFA Superfamily II DNA/RNA helicase required for 99.92
KOG0950|consensus 1008 99.92
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 99.92
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.92
PF00270169 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 99.92
PRK13107 908 preprotein translocase subunit SecA; Reviewed 99.89
COG1643845 HrpA HrpA-like helicases [DNA replication, recombi 99.89
COG1203733 CRISPR-associated helicase Cas3 [Defense mechanism 99.89
PRK129001025 secA preprotein translocase subunit SecA; Reviewed 99.89
COG1203 733 CRISPR-associated helicase Cas3 [Defense mechanism 99.88
KOG0922|consensus674 99.87
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.87
TIGR00631655 uvrb excinuclease ABC, B subunit. This family is b 99.86
PRK12326764 preprotein translocase subunit SecA; Reviewed 99.84
PRK05298652 excinuclease ABC subunit B; Provisional 99.84
KOG0949|consensus 1330 99.84
KOG0949|consensus1330 99.84
PLN031421033 Probable chromatin-remodeling complex ATPase chain 99.84
COG1643 845 HrpA HrpA-like helicases [DNA replication, recombi 99.83
KOG0923|consensus902 99.83
KOG0924|consensus1042 99.83
COG1198730 PriA Primosomal protein N' (replication factor Y) 99.83
TIGR00631 655 uvrb excinuclease ABC, B subunit. This family is b 99.82
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.82
PRK13103913 secA preprotein translocase subunit SecA; Reviewed 99.81
COG0556663 UvrB Helicase subunit of the DNA excision repair c 99.81
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.81
COG1110 1187 Reverse gyrase [DNA replication, recombination, an 99.81
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.8
KOG0926|consensus1172 99.8
COG4096875 HsdR Type I site-specific restriction-modification 99.8
COG4096 875 HsdR Type I site-specific restriction-modification 99.8
TIGR01407850 dinG_rel DnaQ family exonuclease/DinG family helic 99.8
TIGR00348667 hsdR type I site-specific deoxyribonuclease, HsdR 99.8
KOG4150|consensus1034 99.79
KOG0920|consensus924 99.79
smart00487201 DEXDc DEAD-like helicases superfamily. 99.79
KOG0922|consensus 674 99.79
smart00487201 DEXDc DEAD-like helicases superfamily. 99.79
COG1198 730 PriA Primosomal protein N' (replication factor Y) 99.79
PRK05298 652 excinuclease ABC subunit B; Provisional 99.77
KOG4150|consensus 1034 99.77
PRK12903925 secA preprotein translocase subunit SecA; Reviewed 99.76
COG0556 663 UvrB Helicase subunit of the DNA excision repair c 99.76
KOG1123|consensus 776 99.75
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 99.75
CHL00122870 secA preprotein translocase subunit SecA; Validate 99.73
KOG0920|consensus 924 99.73
KOG0923|consensus 902 99.72
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.72
KOG0924|consensus 1042 99.71
PRK12326 764 preprotein translocase subunit SecA; Reviewed 99.7
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.69
PRK12902939 secA preprotein translocase subunit SecA; Reviewed 99.69
KOG1123|consensus776 99.67
KOG0926|consensus 1172 99.67
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.67
PRK07246820 bifunctional ATP-dependent DNA helicase/DNA polyme 99.65
PF0027178 Helicase_C: Helicase conserved C-terminal domain; 99.65
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 99.62
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.61
COG4889 1518 Predicted helicase [General function prediction on 99.61
PRK13103 913 secA preprotein translocase subunit SecA; Reviewed 99.6
KOG0925|consensus699 99.6
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.59
COG4889 1518 Predicted helicase [General function prediction on 99.59
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.59
cd00046144 DEXDc DEAD-like helicases superfamily. A diverse f 99.59
KOG0385|consensus971 99.58
KOG0953|consensus700 99.57
PRK12903 925 secA preprotein translocase subunit SecA; Reviewed 99.55
TIGR03117636 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase 99.55
PRK08074928 bifunctional ATP-dependent DNA helicase/DNA polyme 99.54
KOG0385|consensus 971 99.53
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.52
PF04851184 ResIII: Type III restriction enzyme, res subunit; 99.52
PRK129011112 secA preprotein translocase subunit SecA; Reviewed 99.52
KOG0953|consensus 700 99.51
smart0049082 HELICc helicase superfamily c-terminal domain. 99.5
CHL00122 870 secA preprotein translocase subunit SecA; Validate 99.48
smart0049082 HELICc helicase superfamily c-terminal domain. 99.46
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.43
TIGR02562 1110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.39
TIGR025621110 cas3_yersinia CRISPR-associated helicase Cas3. The 99.39
KOG0925|consensus 699 99.39
PRK14873665 primosome assembly protein PriA; Provisional 99.36
KOG0387|consensus923 99.36
PRK12902 939 secA preprotein translocase subunit SecA; Reviewed 99.35
KOG0387|consensus 923 99.34
PRK11747697 dinG ATP-dependent DNA helicase DinG; Provisional 99.34
KOG0384|consensus1373 99.31
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.31
KOG0390|consensus776 99.28
PRK14873 665 primosome assembly protein PriA; Provisional 99.28
KOG1000|consensus689 99.28
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 99.23
KOG0384|consensus 1373 99.22
COG1199654 DinG Rad3-related DNA helicases [Transcription / D 99.21
TIGR00604705 rad3 DNA repair helicase (rad3). All proteins in t 99.19
KOG0390|consensus776 99.19
KOG0389|consensus941 99.17
PF02399824 Herpes_ori_bp: Origin of replication binding prote 99.12
PF02399 824 Herpes_ori_bp: Origin of replication binding prote 99.11
KOG0392|consensus1549 99.11
KOG1000|consensus689 99.1
COG0653822 SecA Preprotein translocase subunit SecA (ATPase, 99.1
PF06862442 DUF1253: Protein of unknown function (DUF1253); In 99.08
TIGR00604 705 rad3 DNA repair helicase (rad3). All proteins in t 99.06
KOG0389|consensus941 99.04
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.02
KOG0392|consensus 1549 99.01
PF07652148 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR 99.01
PRK12901 1112 secA preprotein translocase subunit SecA; Reviewed 99.0
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.91
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.91
smart00489289 DEXDc3 DEAD-like helicases superfamily. 98.88
smart00488289 DEXDc2 DEAD-like helicases superfamily. 98.88
KOG0386|consensus1157 98.81
KOG0386|consensus 1157 98.8
KOG2340|consensus698 98.75
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.75
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.74
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 98.73
COG0610962 Type I site-specific restriction-modification syst 98.72
COG0610 962 Type I site-specific restriction-modification syst 98.71
KOG2340|consensus698 98.62
KOG1002|consensus791 98.61
KOG4439|consensus901 98.59
KOG1002|consensus791 98.58
PF07517266 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 98.48
KOG0921|consensus1282 98.46
KOG4439|consensus901 98.45
TIGR00596814 rad1 DNA repair protein (rad1). This family is bas 98.44
COG0653 822 SecA Preprotein translocase subunit SecA (ATPase, 98.43
KOG0388|consensus1185 98.31
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 98.22
TIGR00596 814 rad1 DNA repair protein (rad1). This family is bas 98.22
KOG0921|consensus 1282 98.19
PRK15483 986 type III restriction-modification system StyLTI en 98.17
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.13
PRK15483986 type III restriction-modification system StyLTI en 98.12
PF13086236 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV 98.11
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.94
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.88
COG3587985 Restriction endonuclease [Defense mechanisms] 97.87
PF02562205 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH 97.87
KOG1015|consensus 1567 97.81
COG3587 985 Restriction endonuclease [Defense mechanisms] 97.8
PF13604196 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL 97.75
KOG1802|consensus 935 97.6
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.59
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.59
PF13872303 AAA_34: P-loop containing NTP hydrolase pore-1 97.53
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.52
PF09848352 DUF2075: Uncharacterized conserved protein (DUF207 97.51
TIGR00376 637 DNA helicase, putative. The gene product may repre 97.49
KOG1803|consensus649 97.47
TIGR00376637 DNA helicase, putative. The gene product may repre 97.47
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.46
KOG0391|consensus 1958 97.37
PF1324576 AAA_19: Part of AAA domain 97.34
PF14617252 CMS1: U3-containing 90S pre-ribosomal complex subu 97.33
PRK10536262 hypothetical protein; Provisional 97.3
PRK10536262 hypothetical protein; Provisional 97.26
PF1324576 AAA_19: Part of AAA domain 97.26
PF12340229 DUF3638: Protein of unknown function (DUF3638); In 97.25
KOG1803|consensus 649 97.25
KOG1802|consensus935 97.23
PF13307167 Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 97.21
KOG0388|consensus1185 97.21
PF14617252 CMS1: U3-containing 90S pre-ribosomal complex subu 97.2
KOG1132|consensus 945 97.15
COG0553866 HepA Superfamily II DNA/RNA helicases, SNF2 family 97.01
TIGR01448720 recD_rel helicase, putative, RecD/TraA family. Thi 96.99
KOG0391|consensus1958 96.97
PRK10875615 recD exonuclease V subunit alpha; Provisional 96.95
PRK10875 615 recD exonuclease V subunit alpha; Provisional 96.91
TIGR01447586 recD exodeoxyribonuclease V, alpha subunit. This f 96.86
TIGR01448 720 recD_rel helicase, putative, RecD/TraA family. Thi 96.86
KOG1132|consensus945 96.84
PRK13889988 conjugal transfer relaxase TraA; Provisional 96.77
TIGR01447 586 recD exodeoxyribonuclease V, alpha subunit. This f 96.73
TIGR02768744 TraA_Ti Ti-type conjugative transfer relaxase TraA 96.62
PRK13889 988 conjugal transfer relaxase TraA; Provisional 96.6
TIGR02768 744 TraA_Ti Ti-type conjugative transfer relaxase TraA 96.56
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.56
PRK14974336 cell division protein FtsY; Provisional 96.46
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.45
COG1875436 NYN ribonuclease and ATPase of PhoH family domains 96.43
COG3421 812 Uncharacterized protein conserved in bacteria [Fun 96.39
PRK04296190 thymidine kinase; Provisional 96.38
PRK06526254 transposase; Provisional 96.38
KOG1805|consensus1100 96.36
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.34
KOG1015|consensus1567 96.3
PRK06526254 transposase; Provisional 96.28
PF00580315 UvrD-helicase: UvrD/REP helicase N-terminal domain 96.25
PF13401131 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S 96.2
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 96.19
PRK08181269 transposase; Validated 96.15
PRK08181269 transposase; Validated 96.13
PRK14974336 cell division protein FtsY; Provisional 96.06
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 96.06
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 96.06
smart00492141 HELICc3 helicase superfamily c-terminal domain. 96.03
PRK138261102 Dtr system oriT relaxase; Provisional 95.98
PF05970364 PIF1: PIF1-like helicase; InterPro: IPR010285 This 95.94
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 95.93
KOG1805|consensus 1100 95.9
PRK04296190 thymidine kinase; Provisional 95.75
smart00382148 AAA ATPases associated with a variety of cellular 95.65
smart00491142 HELICc2 helicase superfamily c-terminal domain. 95.63
TIGR02760 1960 TraI_TIGR conjugative transfer relaxase protein Tr 95.58
smart00382148 AAA ATPases associated with a variety of cellular 95.55
PRK13826 1102 Dtr system oriT relaxase; Provisional 95.54
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.49
PRK07952244 DNA replication protein DnaC; Validated 95.32
PRK12377248 putative replication protein; Provisional 95.29
PRK08116268 hypothetical protein; Validated 95.24
PRK08727233 hypothetical protein; Validated 95.19
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.18
PRK06893229 DNA replication initiation factor; Validated 95.15
PRK11889436 flhF flagellar biosynthesis regulator FlhF; Provis 95.06
cd01120165 RecA-like_NTPases RecA-like NTPases. This family i 95.01
PRK07952244 DNA replication protein DnaC; Validated 95.0
PRK12377248 putative replication protein; Provisional 94.88
smart00492141 HELICc3 helicase superfamily c-terminal domain. 94.87
KOG0989|consensus346 94.83
PRK05642234 DNA replication initiation factor; Validated 94.81
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 94.75
PRK06835329 DNA replication protein DnaC; Validated 94.74
PRK08084235 DNA replication initiation factor; Provisional 94.72
PHA02533 534 17 large terminase protein; Provisional 94.72
COG2805353 PilT Tfp pilus assembly protein, pilus retraction 94.71
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 94.69
PRK12723388 flagellar biosynthesis regulator FlhF; Provisional 94.63
PRK08727233 hypothetical protein; Validated 94.59
KOG1001|consensus674 94.57
PF03354477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.56
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 94.52
PRK08116268 hypothetical protein; Validated 94.52
PHA02533534 17 large terminase protein; Provisional 94.46
COG3421812 Uncharacterized protein conserved in bacteria [Fun 94.41
PF00448196 SRP54: SRP54-type protein, GTPase domain; InterPro 94.39
PRK06921266 hypothetical protein; Provisional 94.37
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 94.37
PF05621302 TniB: Bacterial TniB protein; InterPro: IPR008868 94.31
PF13871278 Helicase_C_4: Helicase_C-like 94.3
PRK14722374 flhF flagellar biosynthesis regulator FlhF; Provis 94.28
smart00491142 HELICc2 helicase superfamily c-terminal domain. 94.24
PF03354 477 Terminase_1: Phage Terminase ; InterPro: IPR005021 94.23
PRK13894319 conjugal transfer ATPase TrbB; Provisional 94.23
cd01124187 KaiC KaiC is a circadian clock protein primarily f 94.09
PRK05642234 DNA replication initiation factor; Validated 94.09
PRK06921266 hypothetical protein; Provisional 94.09
PRK09183259 transposase/IS protein; Provisional 94.07
COG1484254 DnaC DNA replication protein [DNA replication, rec 94.07
KOG1131|consensus755 94.03
PRK06835329 DNA replication protein DnaC; Validated 93.9
PTZ001121164 origin recognition complex 1 protein; Provisional 93.89
PRK06893229 DNA replication initiation factor; Validated 93.86
KOG1001|consensus674 93.84
KOG0989|consensus346 93.78
TIGR03420226 DnaA_homol_Hda DnaA regulatory inactivator Hda. Me 93.77
KOG0701|consensus 1606 93.76
PRK00149450 dnaA chromosomal replication initiation protein; R 93.75
PTZ00112 1164 origin recognition complex 1 protein; Provisional 93.63
PRK13833323 conjugal transfer protein TrbB; Provisional 93.61
PRK09183259 transposase/IS protein; Provisional 93.57
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 93.56
PRK12422445 chromosomal replication initiation protein; Provis 93.55
TIGR00064272 ftsY signal recognition particle-docking protein F 93.54
PRK08903227 DnaA regulatory inactivator Hda; Validated 93.51
PRK08903227 DnaA regulatory inactivator Hda; Validated 93.46
PRK08084235 DNA replication initiation factor; Provisional 93.41
PRK14087450 dnaA chromosomal replication initiation protein; P 93.39
PRK11331459 5-methylcytosine-specific restriction enzyme subun 93.34
cd01124187 KaiC KaiC is a circadian clock protein primarily f 93.32
PRK11054684 helD DNA helicase IV; Provisional 93.28
PF00004132 AAA: ATPase family associated with various cellula 93.19
TIGR00362405 DnaA chromosomal replication initiator protein Dna 93.17
KOG0701|consensus 1606 93.14
COG4962355 CpaF Flp pilus assembly protein, ATPase CpaF [Intr 93.13
PRK10919672 ATP-dependent DNA helicase Rep; Provisional 93.05
PRK13894319 conjugal transfer ATPase TrbB; Provisional 93.05
TIGR02881261 spore_V_K stage V sporulation protein K. Members o 92.91
PRK14087450 dnaA chromosomal replication initiation protein; P 92.9
PF00004132 AAA: ATPase family associated with various cellula 92.87
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 92.85
cd01122271 GP4d_helicase GP4d_helicase is a homohexameric 5'- 92.83
PRK00149450 dnaA chromosomal replication initiation protein; R 92.77
COG1444758 Predicted P-loop ATPase fused to an acetyltransfer 92.77
PF13173128 AAA_14: AAA domain 92.73
PRK06731270 flhF flagellar biosynthesis regulator FlhF; Valida 92.73
PF00308219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 92.72
PRK14086617 dnaA chromosomal replication initiation protein; P 92.66
TIGR02782299 TrbB_P P-type conjugative transfer ATPase TrbB. Th 92.62
TIGR00064272 ftsY signal recognition particle-docking protein F 92.61
TIGR01547396 phage_term_2 phage terminase, large subunit, PBSX 92.53
PF13173128 AAA_14: AAA domain 92.51
PRK13833323 conjugal transfer protein TrbB; Provisional 92.48
PRK14088440 dnaA chromosomal replication initiation protein; P 92.47
PRK14086617 dnaA chromosomal replication initiation protein; P 92.46
PRK10919 672 ATP-dependent DNA helicase Rep; Provisional 92.46
>KOG0336|consensus Back     alignment and domain information 
Probab=100.00  E-value=9.8e-86  Score=664.16  Aligned_cols=446  Identities=52%  Similarity=0.846  Sum_probs=423.2

Q ss_pred             hhcccchHhhhhcccCCccccccCcCCccccCCCHHHHHHHHhhCCCceEEeecCCCccCCCCCCCCCCcccChHHhhcC
Q psy7557           4 LMALSDRKERDKWAREPKIIKNVYKEDPEVANMTPEQVEAFRKKNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQH   83 (936)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~f~~~~~~   83 (936)
                      +.+-+-+.++.+|.++||+.|+||++++++++|+.++++.||+++.++++++...      ....++|+|+.+|+++|+-
T Consensus       154 ~~~~~l~~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~------gekrpIPnP~ctFddAFq~  227 (629)
T KOG0336|consen  154 IREARLKDEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKE------GEKRPIPNPVCTFDDAFQC  227 (629)
T ss_pred             HHHHHhhhhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEeccccc------CCcccCCCCcCcHHHHHhh
Confidence            3344456677899999999999999999999999999999999999999986542      2345799999999999999


Q ss_pred             CHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCCEEEEEcCcHHHH
Q psy7557          84 YPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELA  163 (936)
Q Consensus        84 ~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La  163 (936)
                      .|++++++++.||.+|||||++|||.+++|.|++++|+||+|||++|++|.+.++..++.......+|.+|+++|||+||
T Consensus       228 ~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLa  307 (629)
T KOG0336|consen  228 YPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELA  307 (629)
T ss_pred             hHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888777778899999999999999


Q ss_pred             HHHHHHHHhccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEccchhhhcCCCHHH
Q psy7557         164 TQIEREVNKIDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQ  243 (936)
Q Consensus       164 ~Q~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~  243 (936)
                      .|+.-++.++.+.+.+.+|+|||.....+...++.|.+|+++||++|.++...+.+++..+.|||+||||+|+|+||+++
T Consensus       308 lqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpq  387 (629)
T KOG0336|consen  308 LQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQ  387 (629)
T ss_pred             HHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCcccCCceEEEEEEeCchhhHHHHHHHHHhccCCCC
Q psy7557         244 INKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERD  323 (936)
Q Consensus       244 ~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~  323 (936)
                      +++|+-.++|++|+++.|||||+.++.++..|+.+|+.+.++..++.....++|.+++..+.+|...+..++..+ ....
T Consensus       388 IrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m-s~nd  466 (629)
T KOG0336|consen  388 IRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM-SSND  466 (629)
T ss_pred             HHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc-CCCc
Confidence            999999999999999999999999999999999999999999999999999999998888889988877777777 6788


Q ss_pred             cEEEEeCchHHHHHHHHHhhhcCCceeeecCCCCHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEEecCCCCc
Q psy7557         324 KVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSHI  403 (936)
Q Consensus       324 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~  403 (936)
                      ++||||.++..|+.|+..|.-.|+.+..+||+-.|.+|+..+++|++|+++||||||+++||+|+|+|++|+|||+|.++
T Consensus       467 KvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nI  546 (629)
T KOG0336|consen  467 KVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNI  546 (629)
T ss_pred             eEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccCCCceeEEEEecccChhhHHhHHHHHhhcCCccchhhhhcc
Q psy7557         404 EEYVHRVGRTGRAGKSGESITLMTRKDWSHAHEIIPILEEGGHESYMIWRRDS  456 (936)
Q Consensus       404 ~~y~qr~GRagR~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  456 (936)
                      +.|+||+||+||+|+.|.+++|++..|+..+.+|+++|++++|++|....++.
T Consensus       547 eeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mA  599 (629)
T KOG0336|consen  547 EEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMA  599 (629)
T ss_pred             HHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765544

>KOG0331|consensus Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG0338|consensus Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>KOG0345|consensus Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0346|consensus Back     alignment and domain information
>KOG0347|consensus Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>KOG0348|consensus Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>KOG0327|consensus Back     alignment and domain information
>KOG4284|consensus Back     alignment and domain information
>KOG0337|consensus Back     alignment and domain information
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>KOG0344|consensus Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>KOG0350|consensus Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK13767 ATP-dependent helicase; Provisional Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>KOG0329|consensus Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>COG1201 Lhr Lhr-like helicases [General function prediction only] Back     alignment and domain information
>PRK10689 transcription-repair coupling factor; Provisional Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>TIGR00580 mfd transcription-repair coupling factor (mfd) Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>PRK09751 putative ATP-dependent helicase Lhr; Provisional Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK10917 ATP-dependent DNA helicase RecG; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PRK09401 reverse gyrase; Reviewed Back     alignment and domain information
>COG1204 Superfamily II helicase [General function prediction only] Back     alignment and domain information
>TIGR00643 recG ATP-dependent DNA helicase RecG Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK14701 reverse gyrase; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PHA02653 RNA helicase NPH-II; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>KOG0349|consensus Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB Back     alignment and domain information
>KOG0952|consensus Back     alignment and domain information
>TIGR01054 rgy reverse gyrase Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>KOG0351|consensus Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>KOG0352|consensus Back     alignment and domain information
>KOG0354|consensus Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0353|consensus Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0951|consensus Back     alignment and domain information
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05580 primosome assembly protein PriA; Validated Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>PRK09694 helicase Cas3; Provisional Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>cd00268 DEADc DEAD-box helicases Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0948|consensus Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA Back     alignment and domain information
>KOG0947|consensus Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>TIGR00595 priA primosomal protein N' Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0948|consensus Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK12899 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional Back     alignment and domain information
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0950|consensus Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>KOG0949|consensus Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>COG1110 Reverse gyrase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0922|consensus Back     alignment and domain information
>smart00487 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>KOG4150|consensus Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>KOG0920|consensus Back     alignment and domain information
>KOG0923|consensus Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>KOG0924|consensus Back     alignment and domain information
>PRK12326 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG1123|consensus Back     alignment and domain information
>KOG0926|consensus Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>PRK13103 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0925|consensus Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG4889 Predicted helicase [General function prediction only] Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>cd00046 DEXDc DEAD-like helicases superfamily Back     alignment and domain information
>KOG0385|consensus Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>PRK12903 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0385|consensus Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0953|consensus Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>CHL00122 secA preprotein translocase subunit SecA; Validated Back     alignment and domain information
>smart00490 HELICc helicase superfamily c-terminal domain Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0925|consensus Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>PRK12902 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>PRK14873 primosome assembly protein PriA; Provisional Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] Back     alignment and domain information
>TIGR00604 rad3 DNA repair helicase (rad3) Back     alignment and domain information
>KOG0389|consensus Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain Back     alignment and domain information
>PRK12901 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00489 DEXDc3 DEAD-like helicases superfamily Back     alignment and domain information
>smart00488 DEXDc2 DEAD-like helicases superfamily Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG2340|consensus Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] Back     alignment and domain information
>KOG2340|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane Back     alignment and domain information
>KOG0921|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00596 rad1 DNA repair protein (rad1) Back     alignment and domain information
>KOG0921|consensus Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional Back     alignment and domain information
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>COG3587 Restriction endonuclease [Defense mechanisms] Back     alignment and domain information
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A Back     alignment and domain information
>KOG1802|consensus Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>KOG1803|consensus Back     alignment and domain information
>TIGR00376 DNA helicase, putative Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PRK10536 hypothetical protein; Provisional Back     alignment and domain information
>PF13245 AAA_19: Part of AAA domain Back     alignment and domain information
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length Back     alignment and domain information
>KOG1803|consensus Back     alignment and domain information
>KOG1802|consensus Back     alignment and domain information
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit Back     alignment and domain information
>KOG1132|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>PRK10875 recD exonuclease V subunit alpha; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>TIGR01448 recD_rel helicase, putative, RecD/TraA family Back     alignment and domain information
>KOG1132|consensus Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>PRK13889 conjugal transfer relaxase TraA; Provisional Back     alignment and domain information
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>KOG1805|consensus Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA Back     alignment and domain information
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK08181 transposase; Validated Back     alignment and domain information
>PRK14974 cell division protein FtsY; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>KOG1805|consensus Back     alignment and domain information
>PRK04296 thymidine kinase; Provisional Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI Back     alignment and domain information
>smart00382 AAA ATPases associated with a variety of cellular activities Back     alignment and domain information
>PRK13826 Dtr system oriT relaxase; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>cd01120 RecA-like_NTPases RecA-like NTPases Back     alignment and domain information
>PRK07952 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK12377 putative replication protein; Provisional Back     alignment and domain information
>smart00492 HELICc3 helicase superfamily c-terminal domain Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PRK08727 hypothetical protein; Validated Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>PRK08116 hypothetical protein; Validated Back     alignment and domain information
>PHA02533 17 large terminase protein; Provisional Back     alignment and domain information
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins Back     alignment and domain information
>PF13871 Helicase_C_4: Helicase_C-like Back     alignment and domain information
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional Back     alignment and domain information
>smart00491 HELICc2 helicase superfamily c-terminal domain Back     alignment and domain information
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK05642 DNA replication initiation factor; Validated Back     alignment and domain information
>PRK06921 hypothetical protein; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1131|consensus Back     alignment and domain information
>PRK06835 DNA replication protein DnaC; Validated Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK06893 DNA replication initiation factor; Validated Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>KOG0989|consensus Back     alignment and domain information
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>PTZ00112 origin recognition complex 1 protein; Provisional Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK09183 transposase/IS protein; Provisional Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PRK12422 chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK08903 DnaA regulatory inactivator Hda; Validated Back     alignment and domain information
>PRK08084 DNA replication initiation factor; Provisional Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional Back     alignment and domain information
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs Back     alignment and domain information
>PRK11054 helD DNA helicase IV; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>TIGR00362 DnaA chromosomal replication initiator protein DnaA Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information
>PRK13894 conjugal transfer ATPase TrbB; Provisional Back     alignment and domain information
>TIGR02881 spore_V_K stage V sporulation protein K Back     alignment and domain information
>PRK14087 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases Back     alignment and domain information
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed Back     alignment and domain information
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB Back     alignment and domain information
>TIGR00064 ftsY signal recognition particle-docking protein FtsY Back     alignment and domain information
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family Back     alignment and domain information
>PF13173 AAA_14: AAA domain Back     alignment and domain information
>PRK13833 conjugal transfer protein TrbB; Provisional Back     alignment and domain information
>PRK14088 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK14086 dnaA chromosomal replication initiation protein; Provisional Back     alignment and domain information
>PRK10919 ATP-dependent DNA helicase Rep; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query936
2db3_A434 Structural Basis For Rna Unwinding By The Dead-Box 6e-72
2db3_A434 Structural Basis For Rna Unwinding By The Dead-Box 2e-67
2i4i_A417 Crystal Structure Of Human Dead-Box Rna Helicase Dd 2e-69
2i4i_A417 Crystal Structure Of Human Dead-Box Rna Helicase Dd 5e-66
3iuy_A228 Crystal Structure Of Ddx53 Dead-Box Domain Length = 1e-62
4a4d_A253 Crystal Structure Of The N-Terminal Domain Of The H 1e-56
3fe2_A242 Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D 4e-53
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 2e-52
1hv8_A367 Crystal Structure Of A Dead Box Protein From The Hy 5e-46
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 2e-52
2hxy_A391 Crystal Structure Of Human Apo-Eif4aiii Length = 39 2e-49
2hyi_C413 Structure Of The Human Exon Junction Complex With A 3e-52
2hyi_C413 Structure Of The Human Exon Junction Complex With A 2e-49
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 3e-52
2xb2_A411 Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar 2e-49
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 3e-52
2j0q_A410 The Crystal Structure Of The Exon Junction Complex 2e-49
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 4e-52
2j0u_B374 The Crystal Structure Of Eif4aiii-Barentsz Complex 2e-49
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 7e-52
2j0u_A374 The Crystal Structure Of Eif4aiii-Barentsz Complex 3e-49
1s2m_A400 Crystal Structure Of The Dead Box Protein Dhh1p Len 2e-46
1s2m_A400 Crystal Structure Of The Dead Box Protein Dhh1p Len 7e-44
3eiq_A414 Crystal Structure Of Pdcd4-eif4a Length = 414 3e-46
3eiq_A414 Crystal Structure Of Pdcd4-eif4a Length = 414 8e-46
2zu6_A388 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 3e-46
2zu6_A388 Crystal Structure Of The Eif4a-Pdcd4 Complex Length 1e-45
2vso_A395 Crystal Structure Of A Translation Initiation Compl 2e-44
2vso_A395 Crystal Structure Of A Translation Initiation Compl 1e-43
1wrb_A253 Crystal Structure Of The N-Terminal Reca-Like Domai 1e-43
1wrb_A253 Crystal Structure Of The N-Terminal Reca-Like Domai 1e-43
1xtk_A390 Structure Of Decd To Dead Mutation Of Human Uap56 L 3e-43
1xtk_A390 Structure Of Decd To Dead Mutation Of Human Uap56 L 2e-40
1xti_A391 Structure Of Wildtype Human Uap56 Length = 391 8e-43
1xti_A391 Structure Of Wildtype Human Uap56 Length = 391 5e-40
1xtj_A386 Structure Of Human Uap56 In Complex With Adp Length 9e-43
1xtj_A386 Structure Of Human Uap56 In Complex With Adp Length 5e-40
2z0m_A337 Crystal Structure Of Hypothetical Atp-Dependent Rna 2e-42
2z0m_A337 Crystal Structure Of Hypothetical Atp-Dependent Rna 2e-37
1fuu_A394 Yeast Initiation Factor 4a Length = 394 2e-42
1fuu_A394 Yeast Initiation Factor 4a Length = 394 2e-41
3sqx_A512 Structure Of Mss116p (Nte And C-Tail Double Deletio 7e-42
3sqx_A 512 Structure Of Mss116p (Nte And C-Tail Double Deletio 2e-37
3i5x_A563 Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len 7e-42
3i5x_A 563 Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len 2e-37
3sqw_A579 Structure Of Mss116p (Nte Deletion) Bound To Ssrna 8e-42
3sqw_A 579 Structure Of Mss116p (Nte Deletion) Bound To Ssrna 2e-37
3pew_A395 S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 1e-38
3pew_A395 S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 4e-36
3pey_A395 S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length 2e-38
3pey_A395 S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length 4e-36
2gxq_A207 Hera N-Terminal Domain In Complex With Amp, Crystal 3e-38
3mwj_A207 Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap 8e-38
3g0h_A424 Human Dead-box Rna Helicase Ddx19, In Complex With 2e-34
3g0h_A424 Human Dead-box Rna Helicase Ddx19, In Complex With 1e-31
3fho_B508 Structure Of S. Pombe Dbp5 Length = 508 2e-34
3fho_B508 Structure Of S. Pombe Dbp5 Length = 508 1e-31
3fmp_B479 Crystal Structure Of The Nucleoporin Nup214 In Comp 2e-34
3fmp_B479 Crystal Structure Of The Nucleoporin Nup214 In Comp 1e-31
3fht_A412 Crystal Structure Of Human Dbp5 In Complex With Amp 2e-34
3fht_A412 Crystal Structure Of Human Dbp5 In Complex With Amp 1e-31
3ews_A445 Human Dead-Box Rna-Helicase Ddx19 In Complex With A 2e-34
3ews_A445 Human Dead-Box Rna-Helicase Ddx19 In Complex With A 1e-31
3ber_A249 Human Dead-Box Rna-Helicase Ddx47, Conserved Domain 3e-30
3ber_A249 Human Dead-Box Rna-Helicase Ddx47, Conserved Domain 4e-30
1q0u_A219 Crystal Structure Of The Bstdead N-Terminal Domain 4e-28
3bor_A237 Crystal Structure Of The Deadc Domain Of Human Tran 9e-28
3bor_A237 Crystal Structure Of The Deadc Domain Of Human Tran 1e-27
1qva_A223 Yeast Initiation Factor 4a N-Terminal Domain Length 6e-27
1qde_A224 Crystal Structure Of The Atpase Domain Of Translati 8e-27
2g9n_A221 Structure Of The Dead Domain Of Human Eukaryotic In 6e-25
2g9n_A221 Structure Of The Dead Domain Of Human Eukaryotic In 9e-25
1vec_A206 Crystal Structure Of The N-Terminal Domain Of RckP5 6e-25
2pl3_A236 Human Dead-Box Rna Helicase Ddx10, Dead Domain In C 6e-25
2jgn_A185 Ddx3 Helicase Domain Length = 185 2e-24
2jgn_A185 Ddx3 Helicase Domain Length = 185 2e-21
1t6n_A220 Crystal Structure Of The N-Terminal Domain Of Human 3e-24
1t6n_A220 Crystal Structure Of The N-Terminal Domain Of Human 5e-24
3ly5_A262 Ddx18 Dead-Domain Length = 262 5e-24
3dkp_A245 Human Dead-Box Rna-Helicase Ddx52, Conserved Domain 1e-23
2oxc_A230 Human Dead-Box Rna Helicase Ddx20, Dead Domain In C 4e-22
2p6n_A191 Human Dead-box Rna Helicase Ddx41, Helicase Domain 9e-21
2p6n_A191 Human Dead-box Rna Helicase Ddx41, Helicase Domain 1e-18
2kbe_A226 Solution Structure Of Amino-Terminal Domain Of Dbp5 2e-18
2kbe_A226 Solution Structure Of Amino-Terminal Domain Of Dbp5 3e-18
2yjt_D170 Crystal Structure Of E. Coli Dead-Box Protein Srmb 2e-18
2yjt_D170 Crystal Structure Of E. Coli Dead-Box Protein Srmb 5e-14
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 2e-17
2hjv_A163 Structure Of The Second Domain (Residues 207-368) O 3e-13
3fmo_B300 Crystal Structure Of The Nucleoporin Nup214 In Comp 2e-16
3fhc_B235 Crystal Structure Of Human Dbp5 In Complex With Nup 2e-16
2kbf_A187 Solution Structure Of Carboxyl-Terminal Domain Of D 2e-14
2kbf_A187 Solution Structure Of Carboxyl-Terminal Domain Of D 3e-12
2wax_A193 Structure Of The Human Ddx6 C-Terminal Domain In Co 2e-14
2wax_A193 Structure Of The Human Ddx6 C-Terminal Domain In Co 2e-11
3gfp_A189 Structure Of The C-Terminal Domain Of The Dead-Box 3e-14
3gfp_A189 Structure Of The C-Terminal Domain Of The Dead-Box 5e-12
3peu_A188 S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To 3e-14
3peu_A188 S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To 6e-12
4db4_A256 Mss116p Dead-Box Helicase Domain 2 Bound To A Chima 7e-12
4db4_A 256 Mss116p Dead-Box Helicase Domain 2 Bound To A Chima 2e-07
4db2_C257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 7e-12
4db2_C 257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 2e-07
4db2_A257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 8e-12
4db2_A 257 Mss116p Dead-Box Helicase Domain 2 Bound To An Rna 3e-07
1t5i_A172 Crystal Structure Of The C-Terminal Domain Of Uap56 1e-11
1t5i_A172 Crystal Structure Of The C-Terminal Domain Of Uap56 3e-09
1fuk_A165 Crystal Structure Of The Carboxy Terminal Domain Of 1e-11
1fuk_A165 Crystal Structure Of The Carboxy Terminal Domain Of 1e-10
1oyy_A523 Structure Of The Recq Catalytic Core Bound To Atp-G 8e-11
1oyy_A 523 Structure Of The Recq Catalytic Core Bound To Atp-G 3e-09
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 1e-10
3eaq_A212 Novel Dimerization Motif In The Dead Box Rna Helica 1e-10
2rb4_A175 Crystal Structure Of The Helicase Domain Of Human D 2e-10
2rb4_A175 Crystal Structure Of The Helicase Domain Of Human D 2e-08
3i32_A300 Dimeric Structure Of A Hera Helicase Fragment Inclu 3e-10
3i32_A 300 Dimeric Structure Of A Hera Helicase Fragment Inclu 3e-10
1oyw_A523 Structure Of The Recq Catalytic Core Length = 523 2e-09
1oyw_A 523 Structure Of The Recq Catalytic Core Length = 523 4e-08
1wp9_A494 Crystal Structure Of Pyrococcus Furiosus Hef Helica 7e-06
1wp9_A494 Crystal Structure Of Pyrococcus Furiosus Hef Helica 1e-04
2v1x_A591 Crystal Structure Of Human Recq-Like Dna Helicase L 6e-04
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 Back     alignment and structure 
Iteration: 1

 Score =  269 bits (687), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 161/405 (39%), Positives = 233/405 (57%), Gaps = 22/405 (5%)
Query: 47  KNNDISVSVVTSDGQIDENPDFQIPNPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQA 106
           K N+I V V  SD          +P P+  F  A      I+  +    +  P+PIQ  +
Sbjct: 38  KYNNIPVKVTGSD----------VPQPIQHFTSA-DLRDIIIDNVNKSGYKIPTPIQKCS 86
Query: 107 WPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAG-PSVLVMAPTRELATQ 165
            P++ SG D++  AQTG+GKT AFLLP L  + L   P     G P V++++PTRELA Q
Sbjct: 87  IPVISSGRDLMACAQTGSGKTAAFLLPIL--SKLLEDPHELELGRPQVVIVSPTRELAIQ 144
Query: 166 IEREVNKIDYKG-LKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAV 224
           I  E  K  ++  LK   VYGG     Q E I  GCH++IATPGRL DFV R  I  +  
Sbjct: 145 IFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204
Query: 225 SFVVLDEADRMLDLGFEPQINK--TSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKV 282
            FVVLDEADRMLD+GF   + +  T + + P  QT+M SAT+ +++QR+A +++ N V V
Sbjct: 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFV 264
Query: 283 NVGSLDLAATHTVTQKIIILDEDEKKDWLMEFFDNMDEERDKVMVFMGRKASVSAMSSDL 342
            +G +   A   V Q I  +++  K+  L+E    + E+ D  +VF+  K     ++S L
Sbjct: 265 AIGIVG-GACSDVKQTIYEVNKYAKRSKLIEI---LSEQADGTIVFVETKRGADFLASFL 320
Query: 343 ACQYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVINYDFPSH 402
           + +   + S++GD  Q  RE AL D  +G  ++ +AT VASRGLD+ ++ HVINYD PS 
Sbjct: 321 SEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSK 380
Query: 403 IEEYVHRVGRTGRAGKSGESITLM-TRKDWSHAHEIIPILEEGGH 446
           I++YVHR+GRTGR G +G + +     KD + A +++ ILE  G 
Sbjct: 381 IDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQ 425
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 Back     alignment and structure
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Back     alignment and structure
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 Back     alignment and structure
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 Back     alignment and structure
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 Back     alignment and structure
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 Back     alignment and structure
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 Back     alignment and structure
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 Back     alignment and structure
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 Back     alignment and structure
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 Back     alignment and structure
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 Back     alignment and structure
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 Back     alignment and structure
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 Back     alignment and structure
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 Back     alignment and structure
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 Back     alignment and structure
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 Back     alignment and structure
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 Back     alignment and structure
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 Back     alignment and structure
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 Back     alignment and structure
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 Back     alignment and structure
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 Back     alignment and structure
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 Back     alignment and structure
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 Back     alignment and structure
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 Back     alignment and structure
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 Back     alignment and structure
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 Back     alignment and structure
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 Back     alignment and structure
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 Back     alignment and structure
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 Back     alignment and structure
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 Back     alignment and structure
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 Back     alignment and structure
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 Back     alignment and structure
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 Back     alignment and structure
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 Back     alignment and structure
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 Back     alignment and structure
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 Back     alignment and structure
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 Back     alignment and structure
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 Back     alignment and structure
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 Back     alignment and structure
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 Back     alignment and structure
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 Back     alignment and structure
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 Back     alignment and structure
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 Back     alignment and structure
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 Back     alignment and structure
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 Back     alignment and structure
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 Back     alignment and structure
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 Back     alignment and structure
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 Back     alignment and structure
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 Back     alignment and structure
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 Back     alignment and structure
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 Back     alignment and structure
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 Back     alignment and structure
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 Back     alignment and structure
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 Back     alignment and structure
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 Back     alignment and structure
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 Back     alignment and structure
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 Back     alignment and structure
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 Back     alignment and structure
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 Back     alignment and structure
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 Back     alignment and structure
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 Back     alignment and structure
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 Back     alignment and structure
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 Back     alignment and structure
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 Back     alignment and structure
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 Back     alignment and structure
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 Back     alignment and structure
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 Back     alignment and structure
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 Back     alignment and structure
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 Back     alignment and structure
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 Back     alignment and structure
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 Back     alignment and structure
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 Back     alignment and structure
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 Back     alignment and structure
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 Back     alignment and structure
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 Back     alignment and structure
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 Back     alignment and structure
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 Back     alignment and structure
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 Back     alignment and structure
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 Back     alignment and structure
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 Back     alignment and structure
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 Back     alignment and structure
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 Back     alignment and structure
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 Back     alignment and structure
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 Back     alignment and structure
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S Length = 523 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 Back     alignment and structure
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 Back     alignment and structure
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 Back     alignment and structure
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core Length = 523 Back     alignment and structure
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 Back     alignment and structure
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase Domain Length = 494 Back     alignment and structure
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase Length = 591 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query936
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 0.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 1e-169
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 1e-177
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 1e-163
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 1e-118
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 1e-108
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 1e-117
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 1e-117
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 1e-117
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 1e-106
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 1e-117
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 1e-107
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 1e-116
3i5x_A 563 ATP-dependent RNA helicase MSS116; protein-RNA com 1e-106
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 1e-116
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 1e-115
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 1e-116
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 1e-106
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 1e-113
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 1e-104
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 1e-113
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 1e-103
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 1e-112
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 1e-102
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 1e-111
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 1e-103
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 1e-105
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 1e-95
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 1e-102
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 2e-93
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 1e-102
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 1e-101
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 1e-100
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 5e-91
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 1e-98
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 4e-91
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 2e-93
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 1e-89
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 2e-92
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 8e-92
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 8e-75
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 7e-74
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 7e-74
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 6e-73
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 1e-72
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 4e-72
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 5e-71
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 2e-70
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 5e-70
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 2e-69
3bor_A237 Human initiation factor 4A-II; translation initiat 5e-70
3bor_A237 Human initiation factor 4A-II; translation initiat 2e-69
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 4e-69
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 4e-69
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 6e-67
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 5e-66
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 2e-66
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 4e-66
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 3e-64
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 3e-53
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 2e-63
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 3e-63
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 2e-63
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 1e-50
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 4e-61
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 2e-60
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 2e-42
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 3e-33
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 1e-39
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 3e-30
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 2e-37
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 7e-29
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 3e-36
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 9e-28
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 6e-36
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 3e-29
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 1e-32
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 6e-25
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 3e-32
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 7e-24
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 9e-20
1wp9_A 494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-18
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 4e-16
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 1e-13
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 4e-16
3o8b_A 666 HCV NS3 protease/helicase; ntpase, RNA, translocat 5e-14
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 3e-12
4a2q_A 797 RIG-I, retinoic acid inducible protein I; hydrolas 4e-11
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 3e-07
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 7e-12
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 7e-10
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 3e-11
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 1e-08
3b6e_A216 Interferon-induced helicase C domain-containing P; 4e-11
3b6e_A216 Interferon-induced helicase C domain-containing P; 5e-11
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 1e-10
2jlq_A 451 Serine protease subunit NS3; ribonucleoprotein, nu 3e-09
1yks_A440 Genome polyprotein [contains: flavivirin protease 3e-10
1yks_A 440 Genome polyprotein [contains: flavivirin protease 4e-09
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 5e-10
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 5e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 2e-09
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 2e-09
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 3e-08
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 5e-07
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 2e-09
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 3e-08
3tbk_A 555 RIG-I helicase domain; DECH helicase, ATP binding, 5e-08
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 4e-07
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 5e-09
2whx_A 618 Serine protease/ntpase/helicase NS3; transcription 8e-08
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 6e-09
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 3e-07
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 3e-07
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 5e-07
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 6e-09
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 9e-09
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 2e-08
2v6i_A 431 RNA helicase; membrane, hydrolase, transmembrane, 2e-07
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 2e-07
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 2e-06
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 4e-07
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 4e-07
4a2p_A 556 RIG-I, retinoic acid inducible protein I; hydrolas 1e-06
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 9e-06
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 8e-07
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 9e-07
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 3e-06
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 5e-06
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 2e-05
2z83_A 459 Helicase/nucleoside triphosphatase; hydrolase, mem 7e-04
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 2e-04
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 Back     alignment and structure
 Score =  531 bits (1371), Expect = 0.0
 Identities = 162/438 (36%), Positives = 236/438 (53%), Gaps = 25/438 (5%)

Query: 19  EPKIIKNVYKEDPEVANMTPEQVEAFRK-----KNNDISVSVVTSDGQIDENPDFQIPNP 73
            P+     Y       +                K N+I V V  SD          +P P
Sbjct: 5   SPEFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSD----------VPQP 54

Query: 74  VTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLP 133
           +  F  A      I+  +    +  P+PIQ  + P++ SG D++  AQTG+GKT AFLLP
Sbjct: 55  IQHFTSADLR-DIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLP 113

Query: 134 ALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNKIDYK-GLKAVCVYGGKEIEPQ 192
            L    L+     E   P V++++PTRELA QI  E  K  ++  LK   VYGG     Q
Sbjct: 114 ILSKL-LEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQ 172

Query: 193 LEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINK--TSIY 250
            E I  GCH++IATPGRL DFV R  I  +   FVVLDEADRMLD+GF   + +  T + 
Sbjct: 173 NECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVT 232

Query: 251 INPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKKDW 310
           + P  QT+M SAT+ +++QR+A +++ N V V +G +   A   V Q I  +++  K+  
Sbjct: 233 MRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSK 291

Query: 311 LMEFFDNMDEERDKVMVFMGRKASVSAMSSDLACQYRKSCSLYGDLSQEDREIALEDITS 370
           L+E    + E+ D  +VF+  K     ++S L+ +   + S++GD  Q  RE AL D  +
Sbjct: 292 LIEI---LSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN 348

Query: 371 GYARICVATDVASRGLDVPDLTHVINYDFPSHIEEYVHRVGRTGRAGKSGESITLMT-RK 429
           G  ++ +AT VASRGLD+ ++ HVINYD PS I++YVHR+GRTGR G +G + +     K
Sbjct: 349 GSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408

Query: 430 DWSHAHEIIPILEEGGHE 447
           D + A +++ ILE  G  
Sbjct: 409 DRAIAADLVKILEGSGQT 426
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query936
4f92_B 1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2i4i_A417 ATP-dependent RNA helicase DDX3X; DEAD, structural 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3sqw_A579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3i5x_A563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
1xti_A391 Probable ATP-dependent RNA helicase P47; alpha-bet 100.0
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 100.0
1s2m_A400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 100.0
2v1x_A591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
3fht_A412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 100.0
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 100.0
3i5x_A 563 ATP-dependent RNA helicase MSS116; protein-RNA com 100.0
3pey_A395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 100.0
3fmp_B479 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
1oyw_A523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 100.0
2z0m_A337 337AA long hypothetical ATP-dependent RNA helicase 100.0
1tf5_A844 Preprotein translocase SECA subunit; ATPase, helic 100.0
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 100.0
3fho_A508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 100.0
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
3oiy_A414 Reverse gyrase helicase domain; topoisomerase, DNA 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
2fsf_A853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
2ykg_A696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
2va8_A 715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 100.0
2zj8_A 720 DNA helicase, putative SKI2-type helicase; RECA fo 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
3l9o_A 1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
2p6r_A 702 Afuhel308 helicase; protein-DNA complex, SF2 helic 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
1gku_B1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
4ddu_A 1104 Reverse gyrase; topoisomerase, DNA supercoiling, a 100.0
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 100.0
1nkt_A922 Preprotein translocase SECA 1 subunit; preprotein 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
4f92_B1724 U5 small nuclear ribonucleoprotein 200 kDa helica; 100.0
2eyq_A1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
4a2p_A556 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 100.0
4a2w_A936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
2xgj_A 1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
4a2q_A797 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
3tbk_A555 RIG-I helicase domain; DECH helicase, ATP binding, 100.0
4gl2_A699 Interferon-induced helicase C domain-containing P; 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1gku_B 1054 Reverse gyrase, TOP-RG; topoisomerase, DNA superco 100.0
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 100.0
4a4z_A 997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
2whx_A618 Serine protease/ntpase/helicase NS3; transcription 100.0
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 100.0
4gl2_A 699 Interferon-induced helicase C domain-containing P; 100.0
2jlq_A451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 100.0
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 100.0
1yks_A440 Genome polyprotein [contains: flavivirin protease 100.0
2wv9_A673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
1gm5_A780 RECG; helicase, replication restart; HET: DNA ADP; 100.0
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 100.0
2xau_A773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
3o8b_A666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 100.0
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 100.0
3fe2_A242 Probable ATP-dependent RNA helicase DDX5; DEAD, AD 100.0
2jlq_A 451 Serine protease subunit NS3; ribonucleoprotein, nu 100.0
3iuy_A228 Probable ATP-dependent RNA helicase DDX53; REC-A-l 100.0
2oca_A510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 100.0
2whx_A 618 Serine protease/ntpase/helicase NS3; transcription 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
2z83_A459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
2v6i_A431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
2wv9_A 673 Flavivirin protease NS2B regulatory subunit, FLAV 100.0
2xau_A 773 PRE-mRNA-splicing factor ATP-dependent RNA helica; 100.0
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 100.0
3o8b_A 666 HCV NS3 protease/helicase; ntpase, RNA, translocat 100.0
1yks_A 440 Genome polyprotein [contains: flavivirin protease 100.0
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
3rc3_A677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
3bor_A237 Human initiation factor 4A-II; translation initiat 100.0
2v6i_A 431 RNA helicase; membrane, hydrolase, transmembrane, 100.0
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 100.0
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 100.0
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 100.0
2z83_A 459 Helicase/nucleoside triphosphatase; hydrolase, mem 100.0
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 100.0
3jux_A822 Protein translocase subunit SECA; protein transloc 100.0
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 100.0
3fmo_B300 ATP-dependent RNA helicase DDX19B; nuclear porin, 100.0
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 100.0
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 100.0
3h1t_A590 Type I site-specific restriction-modification syst 100.0
3ber_A249 Probable ATP-dependent RNA helicase DDX47; DEAD, A 100.0
3bor_A237 Human initiation factor 4A-II; translation initiat 100.0
1vec_A206 ATP-dependent RNA helicase P54; DEAD-box protein, 100.0
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 100.0
2oxc_A230 Probable ATP-dependent RNA helicase DDX20; DEAD, s 100.0
1q0u_A219 Bstdead; DEAD protein, RNA binding protein; 1.85A 100.0
1wrb_A253 DJVLGB; RNA helicase, DEAD BOX, VASA, structural g 100.0
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 100.0
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 100.0
1qde_A224 EIF4A, translation initiation factor 4A; DEAD box 100.0
2gxq_A207 Heat resistant RNA dependent ATPase; RNA helicase, 100.0
2pl3_A236 Probable ATP-dependent RNA helicase DDX10; DEAD, s 100.0
3dkp_A245 Probable ATP-dependent RNA helicase DDX52; DEAD, A 100.0
3rc3_A 677 ATP-dependent RNA helicase SUPV3L1, mitochondrial; 100.0
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 100.0
3ly5_A262 ATP-dependent RNA helicase DDX18; alpha-beta, stru 100.0
1t6n_A220 Probable ATP-dependent RNA helicase; RECA-like fol 99.98
3dmq_A968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.97
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.97
2w00_A1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.97
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 99.97
3jux_A 822 Protein translocase subunit SECA; protein transloc 99.96
1z63_A500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.96
2w00_A 1038 HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri 99.96
2ipc_A997 Preprotein translocase SECA subunit; nucleotide bi 99.96
1c4o_A664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.95
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.95
3mwy_W800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.95
1z3i_X644 Similar to RAD54-like; recombination ATPase helica 99.95
2d7d_A661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.94
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.94
3mwy_W 800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.94
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.94
1z3i_X 644 Similar to RAD54-like; recombination ATPase helica 99.94
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.94
1c4o_A 664 DNA nucleotide excision repair enzyme UVRB; uvrabc 99.93
2ipc_A 997 Preprotein translocase SECA subunit; nucleotide bi 99.93
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.93
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.93
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.92
2d7d_A 661 Uvrabc system protein B; helicase, protein-DNA-ADP 99.92
3i32_A300 Heat resistant RNA dependent ATPase; RNA helicase, 99.91
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.82
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 99.89
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.88
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 99.88
3b6e_A216 Interferon-induced helicase C domain-containing P; 99.88
1t5i_A172 C_terminal domain of A probable ATP-dependent RNA 99.88
2rb4_A175 ATP-dependent RNA helicase DDX25; rossmann fold, s 99.87
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 99.86
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 99.86
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.86
3llm_A235 ATP-dependent RNA helicase A; alpha-beta-alpha, st 99.85
3eaq_A212 Heat resistant RNA dependent ATPase; DEAD box RNA 99.85
2vl7_A540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.85
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 99.84
2vl7_A 540 XPD; helicase, unknown function; 2.25A {Sulfolobus 99.83
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.82
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.81
2yjt_D170 ATP-dependent RNA helicase SRMB, regulator of ribo 99.69
1rif_A282 DAR protein, DNA helicase UVSW; bacteriophage, REC 99.8
3crv_A551 XPD/RAD3 related DNA helicase; XPD helicase DNA re 99.77
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.75
2fz4_A237 DNA repair protein RAD25; RECA-like domain, DNA da 99.74
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.71
4a15_A620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.64
1z5z_A271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.62
4a15_A 620 XPD helicase, ATP-dependent DNA helicase TA0057; h 99.54
1w36_D608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.68
1w36_D 608 RECD, exodeoxyribonuclease V alpha chain; recombin 98.62
3e1s_A574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.78
3e1s_A 574 Exodeoxyribonuclease V, subunit RECD; alpha and be 97.73
4b3f_X646 DNA-binding protein smubp-2; hydrolase, helicase; 97.73
2gk6_A624 Regulator of nonsense transcripts 1; UPF1, helicas 97.68
2gk6_A 624 Regulator of nonsense transcripts 1; UPF1, helicas 97.68
4b3f_X 646 DNA-binding protein smubp-2; hydrolase, helicase; 97.65
3upu_A 459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.64
3upu_A459 ATP-dependent DNA helicase DDA; RECA-like domain, 97.63
2xzl_A802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.6
2xzl_A 802 ATP-dependent helicase NAM7; hydrolase-RNA complex 97.6
2wjy_A800 Regulator of nonsense transcripts 1; nonsense medi 97.54
2wjy_A 800 Regulator of nonsense transcripts 1; nonsense medi 97.45
3lfu_A647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 97.08
3hgt_A328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 96.75
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 96.21
2o0j_A385 Terminase, DNA packaging protein GP17; nucleotide- 96.17
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 96.11
3hgt_A 328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 96.03
3ec2_A180 DNA replication protein DNAC; helicase loader, rep 95.76
3cpe_A 592 Terminase, DNA packaging protein GP17; large termi 95.71
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 95.5
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.45
3cpe_A592 Terminase, DNA packaging protein GP17; large termi 95.43
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 95.37
3te6_A318 Regulatory protein SIR3; heterochromatin, gene sil 95.31
3vkw_A446 Replicase large subunit; alpha/beta domain, helica 95.26
2orw_A184 Thymidine kinase; TMTK, TP4A, transferase; HET: 4T 94.91
3lfu_A 647 DNA helicase II; SF1 helicase, ATP-binding, DNA da 94.8
2kjq_A149 DNAA-related protein; solution structure, NESG, st 94.69
2kjq_A149 DNAA-related protein; solution structure, NESG, st 94.52
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 94.25
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 94.24
1xx6_A191 Thymidine kinase; NESG, northeast structural genom 94.16
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 94.07
3bos_A242 Putative DNA replication factor; P-loop containing 93.97
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 93.85
1d2n_A272 N-ethylmaleimide-sensitive fusion protein; hexamer 93.82
2b8t_A223 Thymidine kinase; deoxyribonucleoside kinase, zinc 93.76
1pjr_A724 PCRA; DNA repair, DNA replication, SOS response, h 93.66
1uaa_A673 REP helicase, protein (ATP-dependent DNA helicase 93.36
3kl4_A433 SRP54, signal recognition 54 kDa protein; signal r 93.34
1pjr_A 724 PCRA; DNA repair, DNA replication, SOS response, h 93.19
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 93.08
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 93.06
1uaa_A 673 REP helicase, protein (ATP-dependent DNA helicase 93.02
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 92.93
1l8q_A324 Chromosomal replication initiator protein DNAA; AA 92.9
2chg_A226 Replication factor C small subunit; DNA-binding pr 92.86
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 92.46
2v1u_A387 Cell division control protein 6 homolog; DNA repli 92.29
3u4q_A 1232 ATP-dependent helicase/nuclease subunit A; helicas 92.29
2w58_A202 DNAI, primosome component (helicase loader); ATP-b 92.25
2zpa_A671 Uncharacterized protein YPFI; RNA modification enz 92.25
1jbk_A195 CLPB protein; beta barrel, chaperone; 1.80A {Esche 91.8
2p65_A187 Hypothetical protein PF08_0063; CLPB, malaria, str 91.67
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 91.64
2v1u_A387 Cell division control protein 6 homolog; DNA repli 91.62
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 91.58
2qgz_A308 Helicase loader, putative primosome component; str 91.56
3bos_A242 Putative DNA replication factor; P-loop containing 91.53
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 91.44
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 91.29
2z4s_A440 Chromosomal replication initiator protein DNAA; AA 91.23
2zpa_A 671 Uncharacterized protein YPFI; RNA modification enz 91.19
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 91.16
1a5t_A334 Delta prime, HOLB; zinc finger, DNA replication; 2 91.1
2chg_A226 Replication factor C small subunit; DNA-binding pr 91.1
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 91.07
2qby_B384 CDC6 homolog 3, cell division control protein 6 ho 91.03
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 90.98
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 90.74
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 90.55
2j9r_A214 Thymidine kinase; TK1, DNK, lasso, transferase, AT 90.12
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 90.11
2orv_A234 Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 89.89
3dm5_A443 SRP54, signal recognition 54 kDa protein; protein- 89.67
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 89.59
1w4r_A195 Thymidine kinase; type II, human, cytosolic, phosp 89.4
1fnn_A389 CDC6P, cell division control protein 6; ORC1, AAA 89.22
3syl_A309 Protein CBBX; photosynthesis, rubisco activase, AA 89.08
2qgz_A308 Helicase loader, putative primosome component; str 88.85
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 88.83
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 88.54
1g5t_A196 COB(I)alamin adenosyltransferase; P-loop protein, 88.54
2qby_A386 CDC6 homolog 1, cell division control protein 6 ho 88.5
3e2i_A219 Thymidine kinase; Zn-binding, ATP-binding, DNA syn 88.0
3h4m_A285 Proteasome-activating nucleotidase; ATPase, PAN, A 87.72
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 87.52
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 87.37
3eie_A322 Vacuolar protein sorting-associated protein 4; AAA 87.31
3u61_B324 DNA polymerase accessory protein 44; AAA+, ATP hyd 87.15
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 86.58
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 86.42
1sxj_A516 Activator 1 95 kDa subunit; clamp loader, processi 86.39
3pfi_A338 Holliday junction ATP-dependent DNA helicase RUVB; 85.86
2dr3_A247 UPF0273 protein PH0284; RECA superfamily ATPase, h 84.89
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 84.86
3co5_A143 Putative two-component system transcriptional RES 83.98
1njg_A250 DNA polymerase III subunit gamma; rossman-like fol 83.95
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 83.57
2q6t_A444 DNAB replication FORK helicase; hydrolase; 2.90A { 83.38
2gno_A305 DNA polymerase III, gamma subunit-related protein; 83.2
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 82.6
1sxj_A 516 Activator 1 95 kDa subunit; clamp loader, processi 82.56
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 82.14
1iqp_A327 RFCS; clamp loader, extended AAA-ATPase domain, co 82.06
3pvs_A447 Replication-associated recombination protein A; ma 81.95
3co5_A143 Putative two-component system transcriptional RES 81.76
1sxj_E354 Activator 1 40 kDa subunit; clamp loader, processi 81.39
3pvs_A447 Replication-associated recombination protein A; ma 81.31
1sxj_C340 Activator 1 40 kDa subunit; clamp loader, processi 80.82
3n70_A145 Transport activator; sigma-54, ntpase, PSI, MCSG, 80.19
2r6a_A454 DNAB helicase, replicative helicase; replication, 80.17
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
Probab=100.00  E-value=1.9e-84  Score=831.95  Aligned_cols=821  Identities=16%  Similarity=0.189  Sum_probs=547.5

Q ss_pred             CCCCCcHHHHHHHHHHh-cCCcEEEEecCCCCcchhchHHHHHHhhcCCCC--CCCCCCCEEEEEcCcHHHHHHHHHHHH
Q psy7557          95 SFTTPSPIQAQAWPILM-SGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTP--ISERAGPSVLVMAPTRELATQIEREVN  171 (936)
Q Consensus        95 g~~~~~~~Q~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~--~~~~~~~~~lil~Pt~~La~Q~~~~~~  171 (936)
                      ||++++++|++++|.++ +++|+++|||||||||++|.+|++..+......  .....+.++||++|+++||.|+++.++
T Consensus        76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~  155 (1724)
T 4f92_B           76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG  155 (1724)
T ss_dssp             TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence            89999999999999987 578999999999999999999999888654321  122457899999999999999999998


Q ss_pred             h-ccCCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCC--cCCCCceEEEEccchhhhcCCCHHHHHHHH
Q psy7557         172 K-IDYKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRAS--IDLKAVSFVVLDEADRMLDLGFEPQINKTS  248 (936)
Q Consensus       172 ~-~~~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l~~~~~~~~~~~i~  248 (936)
                      + +...|+++..++|+.+....   ...+++|+|+|||+|..++.+..  ..++++++|||||+|.+.+ ..+..++.++
T Consensus       156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l  231 (1724)
T 4f92_B          156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV  231 (1724)
T ss_dssp             HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred             HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence            7 67789999999998776543   23458999999999955544432  2378999999999997766 5666665443


Q ss_pred             h-------hcCCCCcEEEEEeccchHHHHHHHHhcCCCEE-EEeCCCCcccCCceEEEEEEeCchhhH-------HHHHH
Q psy7557         249 I-------YINPNRQTVMTSATWNKDVQRVAKKYMVNPVK-VNVGSLDLAATHTVTQKIIILDEDEKK-------DWLME  313 (936)
Q Consensus       249 ~-------~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~  313 (936)
                      .       ..++..|+|++|||+| +..++++++..++.. +.... ....+..+.+.++........       ..+.+
T Consensus       232 ~rl~~~~~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~-~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~  309 (1724)
T 4f92_B          232 ARAIRNIEMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFD-NSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE  309 (1724)
T ss_dssp             HHHHHHHHHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECC-GGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEEC-CCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence            3       4578899999999998 577788776554311 11111 112345566666555443221       12233


Q ss_pred             HHHhccCCCCcEEEEeCchHHHHHHHHHhhhc-------------------------------------CCceeeecCCC
Q psy7557         314 FFDNMDEERDKVMVFMGRKASVSAMSSDLACQ-------------------------------------YRKSCSLYGDL  356 (936)
Q Consensus       314 ~l~~~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~  356 (936)
                      .+... ..++++||||+|++.|+.+|..|...                                     ..+++.|||||
T Consensus       310 ~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL  388 (1724)
T 4f92_B          310 KIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGM  388 (1724)
T ss_dssp             HHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSS
T ss_pred             HHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCC
Confidence            33333 34679999999999999888877531                                     23578899999


Q ss_pred             CHHHHHHHHHHhhcCCcEEEEEecccccCCCCCCCcEEEE----ecC------CCCccccccCCCCcccCCC--ceeEEE
Q psy7557         357 SQEDREIALEDITSGYARICVATDVASRGLDVPDLTHVIN----YDF------PSHIEEYVHRVGRTGRAGK--SGESIT  424 (936)
Q Consensus       357 ~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~------p~s~~~y~qr~GRagR~g~--~g~~~~  424 (936)
                      ++.+|..+++.|++|.++|||||+++++|||+|++++||.    ||.      |-++.+|+||+|||||+|.  .|.+++
T Consensus       389 ~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii  468 (1724)
T 4f92_B          389 TRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGIL  468 (1724)
T ss_dssp             CTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEE
T ss_pred             CHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEE
Confidence            9999999999999999999999999999999999999995    554      4589999999999999975  599999


Q ss_pred             EecccChhhHHhHHHH---------------Hh----hcC-Cccch--hhhhccccc-----------------------
Q psy7557         425 LMTRKDWSHAHEIIPI---------------LE----EGG-HESYM--IWRRDSRIA-----------------------  459 (936)
Q Consensus       425 ~~~~~~~~~~~~l~~~---------------l~----~~~-~~~~~--~~~~~~~~~-----------------------  459 (936)
                      ++++++...+..++.-               +.    .+. .....  .|...+...                       
T Consensus       469 ~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l  548 (1724)
T 4f92_B          469 ITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLL  548 (1724)
T ss_dssp             EEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTC
T ss_pred             EecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHH
Confidence            9998876654433210               00    000 00000  000000000                       


Q ss_pred             ------------------eeEe-ecC-C-------ceeeecccCCCcchhhhcc------------------cchhhh-h
Q psy7557         460 ------------------LHVI-LEG-G-------EEVVEEEEGGEDGMEILVG------------------VDLEVV-M  493 (936)
Q Consensus       460 ------------------~~~~-~~~-~-------~~~~~~~e~~~~~~~~~~~------------------~~l~~~-~  493 (936)
                                        .-.. ... +       +.....++.....+..+..                  .+.... .
T Consensus       549 ~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~  628 (1724)
T 4f92_B          549 DQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITV  628 (1724)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCc
Confidence                              0000 000 0       0001111111111111110                  000000 1


Q ss_pred             ccchhhhHHHhhhhhcccCCCCCCCc---------------------------------------------------cHH
Q psy7557         494 EGEEEGEVAIQMINKIDLGRHIDPEP---------------------------------------------------TME  522 (936)
Q Consensus       494 ~~e~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~  522 (936)
                      +.++..+........+.+.++....+                                                   ...
T Consensus       629 R~~E~~~l~~l~~~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~  708 (1724)
T 4f92_B          629 REEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTD  708 (1724)
T ss_dssp             CGGGHHHHHHHHHHSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            22222222222222221111111000                                                   123


Q ss_pred             HHHhhccHHHhhhhcccCccccCCcc-------------CChhhhCCCHHHHHHHHhh-------------cCCceee--
Q psy7557         523 ELMALSDRKERDKWAREPKIIKNVYK-------------EDPEVANMTPEQVEAFRKK-------------NNDISVS--  574 (936)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~-------------~~~~~~~--  574 (936)
                      .+..++++.+.+.|....+.++....             .-....+++..+.+.+...             .-.+.+.  
T Consensus       709 ~~l~l~k~i~~~~w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~  788 (1724)
T 4f92_B          709 KTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVH  788 (1724)
T ss_dssp             HHHHHHHHHHHTSCTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEE
Confidence            55678889999999988776655321             2234556777776544211             0000000  


Q ss_pred             -----------------------------------eecCCCC--------------------------------c-----
Q psy7557         575 -----------------------------------VVTSDGQ--------------------------------I-----  582 (936)
Q Consensus       575 -----------------------------------~~~~~~~--------------------------------~-----  582 (936)
                                                         +...++.                                +     
T Consensus       789 ~~p~~~~~~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~  868 (1724)
T 4f92_B          789 LQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIR  868 (1724)
T ss_dssp             EEESSSSEEEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEE
T ss_pred             EEecCCceEEEEEEEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEE
Confidence                                               0000000                                0     


Q ss_pred             ---C-----------CCCCCCCCCCcCChHHhhc--------CCHHHHHHHHhCCCCCCcHHHHHHHHhhhc-CCcEEEE
Q psy7557         583 ---D-----------ENPDFQIPNPVTSFKQAFQ--------HYPEILRQLENLSFTTPSPIQAQAWPILMS-GHDMIGI  639 (936)
Q Consensus       583 ---~-----------~~~~~~~p~~~~~f~~~~~--------l~~~~~~~l~~~g~~~p~~iQ~~ai~~~l~-g~d~i~~  639 (936)
                         +           .....-+|.....+.++++        +.++..+.+...+|++|+|+|+++++.++. ++|++++
T Consensus       869 ~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~  948 (1724)
T 4f92_B          869 VVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVG  948 (1724)
T ss_dssp             EEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEE
T ss_pred             EEEccccCCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence               0           0001112222222222222        335678888889999999999999999985 5789999


Q ss_pred             ecCCCCcchhhHHHHHHHhhccCCCCccCCCCEEEEEecCHHHHHHHHHHHHh-cc-CCCCEEEEEECCccchHHHHHHh
Q psy7557         640 AQTGTGKTFAFLLPALIHTHLQTTPISERAGPSVLVMAPTRELATQIEREVNK-ID-YKGLKAVCVYGGKELEPQLEKIR  717 (936)
Q Consensus       640 apTGsGKTl~~~lp~l~~~~~~~~~~~~~~~~~~lil~Pt~~La~Q~~~~~~~-~~-~~~~~~~~~~gg~~~~~~~~~l~  717 (936)
                      ||||||||++|.+|++..+..       ..+.++||++|+++||.|+++.+++ ++ ..++++..++|+...+..   ..
T Consensus       949 APTGSGKTliaelail~~l~~-------~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~ 1018 (1724)
T 4f92_B          949 APTGSGKTICAEFAILRMLLQ-------SSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LL 1018 (1724)
T ss_dssp             CCTTSCCHHHHHHHHHHHHHH-------CTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HH
T ss_pred             eCCCCCchHHHHHHHHHHHHh-------CCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hc
Confidence            999999999999999988754       3467899999999999999999976 54 358889888887654322   23


Q ss_pred             cCceEEEeCchHHHHHHHcCCC--CCCCceEEEEcccchhccCCCHHHHHHH-------hhhcCCCceEEEEEecCChHH
Q psy7557         718 EGCHILIATPGRLNDFVSRASI--DLKAVSFVVLDEADRMLDLGFEPQINKT-------SIYINPNRQTVMTSATWNKDV  788 (936)
Q Consensus       718 ~~~~IiV~Tp~~l~~~l~~~~~--~~~~i~~lViDEah~l~~~~~~~~~~~i-------~~~~~~~~q~v~~SAT~~~~~  788 (936)
                      .+++|+|||||+|..+++++..  .++++++||+||+|++.+. .+..++.+       ....+++.|+|++|||++ +.
T Consensus      1019 ~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~-N~ 1096 (1724)
T 4f92_B         1019 GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVICSRMRYISSQIERPIRIVALSSSLS-NA 1096 (1724)
T ss_dssp             HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBT-TH
T ss_pred             CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCC-CH
Confidence            4589999999999888876543  4789999999999988764 45544433       334567899999999996 67


Q ss_pred             HHHHHHhcCCCeEEEeCCCCcccCCceEEEEEEcCcchhH-------HHHHHHHHhccCCCCcEEEEcCChHHHHHHHHH
Q psy7557         789 QRVAKKYMVNPVKVNVGSLDLAATHTVTQKIIILDEDEKK-------DWLMEFFDNMDEERDKVMVFMGRKASVSAMSSD  861 (936)
Q Consensus       789 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~-------~~l~~~l~~~~~~~~~~iIF~~s~~~~~~l~~~  861 (936)
                      .+++.|+..++..+..-... ..+..+...+.........       ..+...+... ...+++||||+|++.|+.++..
T Consensus      1097 ~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~ 1174 (1724)
T 4f92_B         1097 KDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAID 1174 (1724)
T ss_dssp             HHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHH
Confidence            88999886554332221111 1122233333333322211       1223333443 5678999999999999998877


Q ss_pred             HHh----------------------------------cCCceEEEeCCCCHHHHHHHHHHhhcCCCcEEEecccCccCCC
Q psy7557         862 LAC----------------------------------QYRKSCSLYGDLSQEDREIALEDITSGYARICVATDVASRGLD  907 (936)
Q Consensus       862 L~~----------------------------------~~~~~~~~h~~l~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gid  907 (936)
                      |..                                  ...+++.|||+|++.+|..+++.|++|.++|||||+++++|||
T Consensus      1175 L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVn 1254 (1724)
T 4f92_B         1175 ILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMN 1254 (1724)
T ss_dssp             HHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCC
T ss_pred             HHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCC
Confidence            642                                  1346899999999999999999999999999999999999999


Q ss_pred             CCCCCEEEE----cc------CCCChhhhHhhhhhccCC
Q psy7557         908 VPDLTHVIN----YD------FPSHIEEYVHRVGRTGEF  936 (936)
Q Consensus       908 ip~v~~VI~----~d------~p~s~~~yiqr~GRaGR~  936 (936)
                      +|++.+||.    ||      .|.+..+|+||+|||||.
T Consensus      1255 lPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~ 1293 (1724)
T 4f92_B         1255 VAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRP 1293 (1724)
T ss_dssp             CCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCT
T ss_pred             CCccEEEEecCccccCcccccCCCCHHHHHHhhccccCC
Confidence            999999994    32      367899999999999994
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A Back     alignment and structure
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Back     alignment and structure
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Back     alignment and structure
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Back     alignment and structure
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Back     alignment and structure
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Back     alignment and structure
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Back     alignment and structure
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Back     alignment and structure
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Back     alignment and structure
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Back     alignment and structure
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Back     alignment and structure
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Back     alignment and structure
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 Back     alignment and structure
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A Back     alignment and structure
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Back     alignment and structure
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Back     alignment and structure
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Back     alignment and structure
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A Back     alignment and structure
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Back     alignment and structure
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 Back     alignment and structure
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* Back     alignment and structure
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Back     alignment and structure
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Back     alignment and structure
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Back     alignment and structure
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Back     alignment and structure
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Back     alignment and structure
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* Back     alignment and structure
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Back     alignment and structure
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Back     alignment and structure
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Back     alignment and structure
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Back     alignment and structure
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} Back     alignment and structure
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} Back     alignment and structure
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Back     alignment and structure
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Back     alignment and structure
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} Back     alignment and structure
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 936
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 4e-47
d1hv8a1208 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase 8e-47
d1wrba1238 c.37.1.19 (A:164-401) putative ATP-dependent RNA h 1e-46
d1wrba1238 c.37.1.19 (A:164-401) putative ATP-dependent RNA h 3e-46
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 1e-42
d2g9na1218 c.37.1.19 (A:21-238) Initiation factor 4a {Human ( 2e-42
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 3e-40
d1qdea_212 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 3e-40
d2j0sa1222 c.37.1.19 (A:22-243) Probable ATP-dependent RNA he 1e-39
d2j0sa1222 c.37.1.19 (A:22-243) Probable ATP-dependent RNA he 2e-39
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 1e-38
d1t6na_207 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 3e-38
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 5e-36
d1veca_206 c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma 7e-36
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 4e-34
d2bmfa2305 c.37.1.14 (A:178-482) Dengue virus helicase {Dengu 2e-30
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 2e-33
d1s2ma1206 c.37.1.19 (A:46-251) Putative ATP-dependent RNA he 2e-33
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 2e-31
d1gkub1237 c.37.1.16 (B:1-250) Helicase-like "domain" of reve 3e-31
d1q0ua_209 c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR 1e-30
d1q0ua_209 c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR 2e-30
d1a1va2299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 3e-22
d1a1va2 299 c.37.1.14 (A:326-624) HCV helicase domain {Human h 1e-19
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 3e-22
d2p6ra3202 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus 4e-22
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 5e-22
d1oywa2206 c.37.1.19 (A:1-206) RecQ helicase domain {Escheric 7e-22
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 3e-21
d1hv8a2155 c.37.1.19 (A:211-365) Putative DEAD box RNA helica 3e-14
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 1e-20
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 2e-16
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 5e-20
d2fwra1200 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar 8e-16
d1gkub2248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 2e-19
d1gkub2 248 c.37.1.16 (B:251-498) Helicase-like "domain" of re 4e-13
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 1e-18
d1fuka_162 c.37.1.19 (A:) Initiation factor 4a {Baker's yeast 3e-12
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 3e-17
d2j0sa2168 c.37.1.19 (A:244-411) Probable ATP-dependent RNA h 2e-11
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 4e-15
d1oywa3200 c.37.1.19 (A:207-406) RecQ helicase domain {Escher 9e-12
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 2e-14
d1s2ma2171 c.37.1.19 (A:252-422) Putative ATP-dependent RNA h 3e-07
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 7e-14
d2rb4a1168 c.37.1.19 (A:307-474) ATP-dependent RNA helicase D 5e-07
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 7e-13
d1t5la2181 c.37.1.19 (A:415-595) Nucleotide excision repair e 5e-12
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 1e-12
d1jr6a_138 c.37.1.14 (A:) HCV helicase domain {Human hepatiti 2e-10
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 8e-12
d1wp9a1200 c.37.1.19 (A:1-200) putative ATP-dependent RNA hel 1e-11
d1t5ia_168 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 1e-10
d1t5ia_168 c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 3e-05
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 4e-09
d2p6ra4201 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob 7e-05
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  165 bits (418), Expect = 4e-47
 Identities = 64/202 (31%), Positives = 116/202 (57%), Gaps = 10/202 (4%)

Query: 85  PEILRQLENLSFTTPSPIQAQAWPILMSG-HDMIGIAQTGTGKTFAFLLPALIHTHLQTT 143
             IL  + N  F  P+ IQ +  P+ ++  ++++  A+TG+GKT +F +P +   +    
Sbjct: 13  DNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENN- 71

Query: 144 PISERAGPSVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHI 202
                 G   +++ PTRELA Q+  E+  +   K LK   +YGGK I PQ++ ++   +I
Sbjct: 72  ------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANI 124

Query: 203 LIATPGRLNDFVSRASIDLKAVSFVVLDEADRMLDLGFEPQINKTSIYINPNRQTVMTSA 262
           ++ TPGR+ D ++R +++LK V + +LDEAD ML++GF   + K     N +++ ++ SA
Sbjct: 125 VVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSA 184

Query: 263 TWNKDVQRVAKKYMVNPVKVNV 284
           T  +++  +AKKYM +   +  
Sbjct: 185 TMPREILNLAKKYMGDYSFIKA 206
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query936
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 100.0
d2j0sa1222 Probable ATP-dependent RNA helicase DDX48 {Human ( 100.0
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 100.0
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 100.0
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 100.0
d1veca_206 DEAD box RNA helicase rck/p54 {Human (Homo sapiens 100.0
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 100.0
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 100.0
d2g9na1218 Initiation factor 4a {Human (Homo sapiens) [TaxId: 100.0
d1qdea_212 Initiation factor 4a {Baker's yeast (Saccharomyces 100.0
d1t6na_207 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 100.0
d1wrba1238 putative ATP-dependent RNA helicase VlgB {Flatworm 100.0
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 100.0
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 100.0
d1hv8a1208 Putative DEAD box RNA helicase {Archaeon Methanoco 100.0
d1s2ma1206 Putative ATP-dependent RNA helicase DHH1 {Baker's 100.0
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 100.0
d1q0ua_209 Probable DEAD box RNA helicase YqfR {Bacillus stea 100.0
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 100.0
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 99.97
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.96
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.96
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.96
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.95
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.95
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.94
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.94
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.93
d2p6ra3202 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.93
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.92
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.92
d1oywa2206 RecQ helicase domain {Escherichia coli [TaxId: 562 99.92
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 99.92
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.91
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 99.91
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.91
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 99.91
d1gkub1237 Helicase-like "domain" of reverse gyrase {Archaeon 99.91
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 99.9
d1t5ia_168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 99.9
d1t5la2181 Nucleotide excision repair enzyme UvrB {Bacillus c 99.9
d1oywa3200 RecQ helicase domain {Escherichia coli [TaxId: 562 99.89
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 99.89
d1c4oa2174 Nucleotide excision repair enzyme UvrB {Thermus th 99.89
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.87
d1wp9a1200 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.87
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.86
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.82
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.81
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.8
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.79
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 99.79
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.78
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.78
d1gkub2248 Helicase-like "domain" of reverse gyrase {Archaeon 99.75
d2p6ra4201 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 99.75
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 99.72
d1a1va2299 HCV helicase domain {Human hepatitis C virus (HCV) 99.72
d2eyqa3233 Transcription-repair coupling factor, TRCF {Escher 99.69
d1gm5a3264 RecG helicase domain {Thermotoga maritima [TaxId: 99.68
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.67
d1a1va2 299 HCV helicase domain {Human hepatitis C virus (HCV) 99.66
d1gkub2 248 Helicase-like "domain" of reverse gyrase {Archaeon 99.66
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.65
d1rifa_282 DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] 99.64
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.64
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.62
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.62
d1yksa1140 YFV helicase domain {Yellow fever virus [TaxId: 11 99.61
d2fz4a1206 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 99.61
d1gm5a4206 RecG helicase domain {Thermotoga maritima [TaxId: 99.57
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.52
d1a1va1136 HCV helicase domain {Human hepatitis C virus (HCV) 99.51
d2eyqa5211 Transcription-repair coupling factor, TRCF {Escher 99.47
d1yksa2299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.3
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.29
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 99.23
d1z3ix1346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.21
d1yksa2 299 YFV helicase domain {Yellow fever virus [TaxId: 11 99.17
d1z5za1244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.16
d1z3ix1 346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.09
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.85
d1tf5a4175 Translocation ATPase SecA, nucleotide-binding doma 98.82
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.81
d1z3ix2298 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 98.81
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.72
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.64
d1z63a1230 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 98.58
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 98.53
d1tf5a3273 Translocation ATPase SecA, nucleotide-binding doma 98.32
d1nkta3288 Translocation ATPase SecA, nucleotide-binding doma 98.08
d1nkta4219 Translocation ATPase SecA, nucleotide-binding doma 97.68
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.52
d1w36d1359 Exodeoxyribonuclease V alpha chain (RecD) {Escheri 97.28
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.73
d1uaaa1306 DEXX box DNA helicase {Escherichia coli, RepD [Tax 96.68
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 96.01
d1pjra1318 DEXX box DNA helicase {Bacillus stearothermophilus 95.99
d1ls1a2207 GTPase domain of the signal sequence recognition p 95.17
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 95.16
d1a5ta2207 delta prime subunit of DNA polymerase III, N-domai 94.86
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 94.41
d1ls1a2207 GTPase domain of the signal sequence recognition p 94.35
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 94.11
g1qhh.1623 DEXX box DNA helicase {Bacillus stearothermophilus 94.08
d2qy9a2211 GTPase domain of the signal recognition particle r 94.06
g1qhh.1 623 DEXX box DNA helicase {Bacillus stearothermophilus 93.55
d1t5la1413 Nucleotide excision repair enzyme UvrB {Bacillus c 92.96
d1l8qa2213 Chromosomal replication initiation factor DnaA {Aq 92.83
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 92.72
d1okkd2207 GTPase domain of the signal recognition particle r 92.66
d1j8yf2211 GTPase domain of the signal sequence recognition p 92.54
d1j8yf2211 GTPase domain of the signal sequence recognition p 92.0
d2qy9a2211 GTPase domain of the signal recognition particle r 91.78
d2gnoa2198 gamma subunit of DNA polymerase III, N-domain {The 91.72
d1vmaa2213 GTPase domain of the signal recognition particle r 91.69
d1okkd2207 GTPase domain of the signal recognition particle r 91.23
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 91.21
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 91.2
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 91.16
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 90.83
d1sxje2252 Replication factor C5 {Baker's yeast (Saccharomyce 90.62
d1g6oa_323 Hexameric traffic ATPase, HP0525 {Helicobacter pyl 90.62
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 89.95
d1njfa_239 delta prime subunit of DNA polymerase III, N-domai 89.43
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 89.42
d1vmaa2213 GTPase domain of the signal recognition particle r 89.41
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 88.08
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 87.41
d1ixza_247 AAA domain of cell division protein FtsH {Thermus 87.35
d1sxjc2227 Replication factor C3 {Baker's yeast (Saccharomyce 87.02
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 85.88
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 85.34
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 84.35
d1g41a_443 HslU {Haemophilus influenzae [TaxId: 727]} 84.21
d1jbka_195 ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} 83.98
d1c4oa1408 Nucleotide excision repair enzyme UvrB {Thermus th 83.44
d1p9ra_401 Extracellular secretion NTPase EpsE {Vibrio choler 82.12
d1ofha_309 HslU {Haemophilus influenzae [TaxId: 727]} 81.39
d1r6bx2268 ClpA, an Hsp100 chaperone, AAA+ modules {Escherich 80.08
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-41  Score=339.41  Aligned_cols=207  Identities=33%  Similarity=0.580  Sum_probs=193.7

Q ss_pred             CcccChHHhhcCCHHHHHHHHhCCCCCCcHHHHHHHHHHhcCCcEEEEecCCCCcchhchHHHHHHhhcCCCCCCCCCCC
Q psy7557          72 NPVTSFKQAFQHYPEILRQLENLSFTTPSPIQAQAWPILMSGHDMIGIAQTGTGKTFAFLLPALIHTHLQTTPISERAGP  151 (936)
Q Consensus        72 ~p~~~f~~~~~~~~~l~~~l~~~g~~~~~~~Q~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~~~~~~~~~~~~~~~  151 (936)
                      .+..+|++ +++++.++++|+++||.+|||+|.+|||.+++|+|++++||||||||+||++|++.++...      ...+
T Consensus        14 ~~~~sF~~-l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~------~~~~   86 (222)
T d2j0sa1          14 DVTPTFDT-MGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ------VRET   86 (222)
T ss_dssp             CCCCSGGG-GCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT------SCSC
T ss_pred             CCCCCHHH-CCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc------ccCc
Confidence            44568998 6999999999999999999999999999999999999999999999999999999877542      4578


Q ss_pred             EEEEEcCcHHHHHHHHHHHHhcc-CCCCEEEEEeCCccchHHHHHhhcCCcEEEeCCchhHHHHHcCCcCCCCceEEEEc
Q psy7557         152 SVLVMAPTRELATQIEREVNKID-YKGLKAVCVYGGKEIEPQLEKIREGCHILIATPGRLNDFVSRASIDLKAVSFVVLD  230 (936)
Q Consensus       152 ~~lil~Pt~~La~Q~~~~~~~~~-~~~~~~~~~~gg~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViD  230 (936)
                      +++|++||+|||.|+++.+++++ ..++++..++||.....+...+..+++|+|+||+++.+++..+...+++++++|+|
T Consensus        87 ~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlD  166 (222)
T d2j0sa1          87 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD  166 (222)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred             eeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeec
Confidence            89999999999999999999985 56899999999999999989999999999999999999999999999999999999


Q ss_pred             cchhhhcCCCHHHHHHHHhhcCCCCcEEEEEeccchHHHHHHHHhcCCCEEEEeC
Q psy7557         231 EADRMLDLGFEPQINKTSIYINPNRQTVMTSATWNKDVQRVAKKYMVNPVKVNVG  285 (936)
Q Consensus       231 Eah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~i~~~  285 (936)
                      |||+|++.||...+..|...+++++|+++||||+|+++.++++.++.+|+.|.++
T Consensus       167 EaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~~~l~~Pv~I~V~  221 (222)
T d2j0sa1         167 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVK  221 (222)
T ss_dssp             THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCC
T ss_pred             chhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHHCCCCEEEEEe
Confidence            9999999999999999999999999999999999999999999999999988654
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Back     information, alignment and structure