Psyllid ID: psy7567

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MGNSEYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQILCYKNF
ccccccHHHHHHHHHHcccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcHHHHcEEEEEEEEEc
ccccHHHHHHHHHHHHHHEEEEEEEEEcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccc
mgnseyclENVSWIIKRKVAYFAVYFYsgqqdnrttKQEMKQNSRGVAFFVKLLQKSLskdgsstkskrkssfdhkgFVLLKNFkglkyisflsswptqvSAYTLVAISIDRYMAImwplrprmskghaKFVIVTIWLTAMVTAVPVFvttgqtipndtfyEFCEFyicgedwedpemKTAYSILVAMLQYGVPLVVLVFTYTSIAIVvwgkqppgeaenqRDRRMAKSkrkkipkcqilcyknf
MGNSEYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKslskdgsstkskrkssfdhkgfVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIvvwgkqppgeaenqrdrrmakskrkkipkcqilcyknf
MGNSEYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQILCYKNF
*****YCLENVSWIIKRKVAYFAVYFYSG*****************VAFFVKLL********************HKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWG*************************CQILCY***
***SEYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVW***********************IPKCQILCYKNF
MGNSEYCLENVSWIIKRKVAYFAVYFYSGQQDN*********NSRGVAFFVKLLQKS***************FDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQP********************PKCQILCYKNF
**NSEYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPP*EAENQRDRRMAKSKRKKIPKCQILCYKNF
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGNSEYCLENVSWIIKRKVAYFAVYFYSGQQDNRTTKQEMKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNFKGLKYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQILCYKNF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
P25931 464 Neuropeptide Y receptor O yes N/A 0.551 0.290 0.533 8e-37
P14600 407 Substance-P receptor OS=R yes N/A 0.567 0.341 0.311 9e-17
P30548 407 Substance-P receptor OS=M yes N/A 0.567 0.341 0.311 1e-16
Q5DUB3 407 Substance-P receptor OS=C yes N/A 0.567 0.341 0.318 1e-16
P29371 465 Neuromedin-K receptor OS= yes N/A 0.571 0.301 0.337 1e-16
Q5DUB1 407 Substance-P receptor OS=M N/A N/A 0.567 0.341 0.311 1e-16
O97512 467 Neuromedin-K receptor OS= yes N/A 0.559 0.293 0.337 3e-16
P30974 504 Tachykinin-like peptides no N/A 0.575 0.279 0.315 6e-16
P25103 407 Substance-P receptor OS=H no N/A 0.567 0.341 0.311 6e-16
P47937 452 Neuromedin-K receptor OS= no N/A 0.559 0.303 0.337 7e-16
>sp|P25931|NPYR_DROME Neuropeptide Y receptor OS=Drosophila melanogaster GN=NepYr PE=2 SV=2 Back     alignment and function desciption
 Score =  154 bits (388), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/135 (53%), Positives = 96/135 (71%)

Query: 100 VSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDT 159
           VSAYTLVAISIDRY+AIMWPL+PR++K +A F+I  +W  A+ TA+P+ + +G  IP   
Sbjct: 192 VSAYTLVAISIDRYIAIMWPLKPRITKRYATFIIAGVWFIALATALPIPIVSGLDIPMSP 251

Query: 160 FYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAE 219
           ++  CE YIC E W     +  Y++ +  LQ+ VPL VL+FTY  I I VW K+PPGEAE
Sbjct: 252 WHTKCEKYICREMWPSRTQEYYYTLSLFALQFVVPLGVLIFTYARITIRVWAKRPPGEAE 311

Query: 220 NQRDRRMAKSKRKKI 234
             RD+RMA+SKRK +
Sbjct: 312 TNRDQRMARSKRKMV 326
Receptor for neuropeptide Y and peptide YY.
Drosophila melanogaster (taxid: 7227)
>sp|P14600|NK1R_RAT Substance-P receptor OS=Rattus norvegicus GN=Tacr1 PE=2 SV=1 Back     alignment and function description
>sp|P30548|NK1R_MOUSE Substance-P receptor OS=Mus musculus GN=Tacr1 PE=2 SV=2 Back     alignment and function description
>sp|Q5DUB3|NK1R_CANFA Substance-P receptor OS=Canis familiaris GN=TACR1 PE=2 SV=1 Back     alignment and function description
>sp|P29371|NK3R_HUMAN Neuromedin-K receptor OS=Homo sapiens GN=TACR3 PE=2 SV=1 Back     alignment and function description
>sp|Q5DUB1|NK1R_MERUN Substance-P receptor OS=Meriones unguiculatus GN=TACR1 PE=2 SV=1 Back     alignment and function description
>sp|O97512|NK3R_RABIT Neuromedin-K receptor OS=Oryctolagus cuniculus GN=TACR3 PE=2 SV=2 Back     alignment and function description
>sp|P30974|TLR1_DROME Tachykinin-like peptides receptor 86C OS=Drosophila melanogaster GN=Takr86C PE=2 SV=2 Back     alignment and function description
>sp|P25103|NK1R_HUMAN Substance-P receptor OS=Homo sapiens GN=TACR1 PE=1 SV=1 Back     alignment and function description
>sp|P47937|NK3R_MOUSE Neuromedin-K receptor OS=Mus musculus GN=Tacr3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
195445641 387 GK11038 [Drosophila willistoni] gi|19416 0.595 0.377 0.568 2e-41
340720847285 PREDICTED: neuropeptide Y receptor-like 0.612 0.526 0.546 1e-40
350412452 432 PREDICTED: neuropeptide Y receptor-like 0.587 0.333 0.565 1e-40
195108947 463 GI24301 [Drosophila mojavensis] gi|19391 0.551 0.291 0.592 2e-40
195390512 371 GJ23080 [Drosophila virilis] gi|19415199 0.542 0.358 0.593 5e-40
195036552340 GH18630 [Drosophila grimshawi] gi|193893 0.551 0.397 0.585 6e-40
390177533 480 GA30114 [Drosophila pseudoobscura pseudo 0.551 0.281 0.585 2e-39
380014215 415 PREDICTED: neuropeptide Y receptor-like 0.587 0.346 0.551 3e-39
195144042 405 GL23895 [Drosophila persimilis] gi|19410 0.542 0.328 0.586 3e-39
110764421 768 PREDICTED: hypothetical protein LOC41161 0.579 0.184 0.552 1e-38
>gi|195445641|ref|XP_002070418.1| GK11038 [Drosophila willistoni] gi|194166503|gb|EDW81404.1| GK11038 [Drosophila willistoni] Back     alignment and taxonomy information
 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 106/146 (72%)

Query: 100 VSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDT 159
           VSAYTLVAISIDRY+AIMWPLRPR++K +AKF+I  +W  A+ TA P+ V +G  +P+  
Sbjct: 219 VSAYTLVAISIDRYIAIMWPLRPRITKRYAKFIIAGVWFIALATAFPIPVVSGLDLPSSP 278

Query: 160 FYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAE 219
           ++E CE YIC E W   E    Y++ +  LQ+ VPL+VL+FTYT IAI VWGK+PPGEAE
Sbjct: 279 WHEKCEKYICKEIWPSSEQAYYYTLALFTLQFVVPLLVLIFTYTRIAIAVWGKRPPGEAE 338

Query: 220 NQRDRRMAKSKRKKIPKCQILCYKNF 245
           N RD+RMA+SKRK  P   I    +F
Sbjct: 339 NSRDQRMARSKRKMAPCLVIGIVDDF 364

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340720847|ref|XP_003398841.1| PREDICTED: neuropeptide Y receptor-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350412452|ref|XP_003489650.1| PREDICTED: neuropeptide Y receptor-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|195108947|ref|XP_001999054.1| GI24301 [Drosophila mojavensis] gi|193915648|gb|EDW14515.1| GI24301 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195390512|ref|XP_002053912.1| GJ23080 [Drosophila virilis] gi|194151998|gb|EDW67432.1| GJ23080 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195036552|ref|XP_001989734.1| GH18630 [Drosophila grimshawi] gi|193893930|gb|EDV92796.1| GH18630 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|390177533|ref|XP_003736405.1| GA30114 [Drosophila pseudoobscura pseudoobscura] gi|388859081|gb|EIM52478.1| GA30114 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|380014215|ref|XP_003691135.1| PREDICTED: neuropeptide Y receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|195144042|ref|XP_002013005.1| GL23895 [Drosophila persimilis] gi|194101948|gb|EDW23991.1| GL23895 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|110764421|ref|XP_395084.3| PREDICTED: hypothetical protein LOC411614 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
FB|FBgn0004842 464 NepYr "Neuropeptide Y receptor 0.595 0.314 0.493 5.7e-36
ZFIN|ZDB-GENE-061207-19 395 tacr3l "tachykinin receptor 3- 0.612 0.379 0.375 5.6e-20
ZFIN|ZDB-GENE-090312-106 399 tacr3a "tachykinin receptor 3a 0.612 0.375 0.381 6e-20
UNIPROTKB|F1N2X0 463 TACR3 "Uncharacterized protein 0.612 0.323 0.357 3.9e-18
UNIPROTKB|F1MIX5 407 TACR1 "Uncharacterized protein 0.620 0.373 0.319 5.4e-18
UNIPROTKB|J9NS65 350 TACR3 "Uncharacterized protein 0.612 0.428 0.345 5.5e-18
UNIPROTKB|P29371 465 TACR3 "Neuromedin-K receptor" 0.612 0.322 0.345 6.5e-18
UNIPROTKB|F1S112360 TACR3 "Uncharacterized protein 0.612 0.416 0.351 6.6e-18
UNIPROTKB|F1PIV0 407 TACR1 "Substance-P receptor" [ 0.620 0.373 0.319 7e-18
UNIPROTKB|Q5DUB3 407 TACR1 "Substance-P receptor" [ 0.620 0.373 0.319 7e-18
FB|FBgn0004842 NepYr "Neuropeptide Y receptor-like" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 72/146 (49%), Positives = 101/146 (69%)

Query:    89 YISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVF 148
             ++++  +    VSAYTLVAISIDRY+AIMWPL+PR++K +A F+I  +W  A+ TA+P+ 
Sbjct:   181 FVNYSQAVSVLVSAYTLVAISIDRYIAIMWPLKPRITKRYATFIIAGVWFIALATALPIP 240

Query:   149 VTTGQTIPNDTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIV 208
             + +G  IP   ++  CE YIC E W     +  Y++ +  LQ+ VPL VL+FTY  I I 
Sbjct:   241 IVSGLDIPMSPWHTKCEKYICREMWPSRTQEYYYTLSLFALQFVVPLGVLIFTYARITIR 300

Query:   209 VWGKQPPGEAENQRDRRMAKSKRKKI 234
             VW K+PPGEAE  RD+RMA+SKRK +
Sbjct:   301 VWAKRPPGEAETNRDQRMARSKRKMV 326
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0004983 "neuropeptide Y receptor activity" evidence=IEA;NAS
GO:0004930 "G-protein coupled receptor activity" evidence=NAS
GO:0004995 "tachykinin receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0007217 "tachykinin receptor signaling pathway" evidence=ISS
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0008188 "neuropeptide receptor activity" evidence=ISS
GO:0007166 "cell surface receptor signaling pathway" evidence=IDA
GO:0001653 "peptide receptor activity" evidence=IPI
ZFIN|ZDB-GENE-061207-19 tacr3l "tachykinin receptor 3-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090312-106 tacr3a "tachykinin receptor 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N2X0 TACR3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MIX5 TACR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NS65 TACR3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P29371 TACR3 "Neuromedin-K receptor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S112 TACR3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PIV0 TACR1 "Substance-P receptor" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q5DUB3 TACR1 "Substance-P receptor" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P25931NPYR_DROMENo assigned EC number0.53330.55100.2909yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-22
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 0.004
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 91.6 bits (228), Expect = 2e-22
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 100 VSAYTLVAISIDRYMAIMWPLR--PRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPN 157
            S   L AISIDRY+AI+ PLR     +   AK +I+ +W+ A++ ++P  + +      
Sbjct: 64  ASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLRTV- 122

Query: 158 DTFYEFCEFYICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGE 217
               E      C  D+ +   K +Y++L  +L + +PL+V++  YT I   +  K+    
Sbjct: 123 ----EEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLR-KRARSG 177

Query: 218 AENQRDRRMAKSKRKK 233
           A   R +R +  +RK 
Sbjct: 178 ASQARAKRSSSKERKA 193

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
KOG4219|consensus 423 99.97
PHA03234338 DNA packaging protein UL33; Provisional 99.92
PHA03235 409 DNA packaging protein UL33; Provisional 99.92
PHA02834323 chemokine receptor-like protein; Provisional 99.91
PHA02638417 CC chemokine receptor-like protein; Provisional 99.88
KOG4220|consensus 503 99.85
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.85
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.82
KOG2087|consensus 363 99.65
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.18
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 98.76
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.6
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.36
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.25
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 97.66
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 97.61
PF11710201 Git3: G protein-coupled glucose receptor regulatin 96.98
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 96.6
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 96.23
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 95.77
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 95.55
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 95.47
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 95.35
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 94.97
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 94.64
PF10322307 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept 93.63
PF13853144 7tm_4: Olfactory receptor 92.8
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 92.3
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 92.28
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 91.17
PF02175236 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemorecept 90.22
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 89.76
KOG4193|consensus610 81.57
>KOG4219|consensus Back     alignment and domain information 
Probab=99.97  E-value=2.1e-30  Score=213.02  Aligned_cols=197  Identities=28%  Similarity=0.511  Sum_probs=154.3

Q ss_pred             hhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc----------------------------cCceeechh
Q psy7567          42 QNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF----------------------------KGLKYISFL   93 (245)
Q Consensus        42 ~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l----------------------------~~C~~~~~~   93 (245)
                      ..+|+++++++++||++|+|+...+|+.|+.++    .++.|+                            ..|++..|+
T Consensus        39 ai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtn----yfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f~nf~  114 (423)
T KOG4219|consen   39 AIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTN----YFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRFVNFF  114 (423)
T ss_pred             HHHHHHHHHHHHhcCceEEEEEeehhehhhhHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeeecccc
Confidence            567999999999999999999988777777665    333343                            469999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhcCCCCccccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeecCCC
Q psy7567          94 SSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICGEDW  173 (245)
Q Consensus        94 ~~~~~~~S~~~l~~isidRy~aI~~P~~~~~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~~~~  173 (245)
                      ..+...+|+++|++||+|||+||.||++.+.+++.+..+++++|+.|++++.|..+.......+..+..  ....|...+
T Consensus       115 ~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~--~~~~~~~~~  192 (423)
T KOG4219|consen  115 PITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGE--SRVVCVTAW  192 (423)
T ss_pred             chhhhhHhHHHHHHHHHHHHHHHhhhcccCCCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCc--ceEEEEEec
Confidence            999999999999999999999999999999999999999999999999999999998876542221100  112333333


Q ss_pred             CC-----hhhh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHhhhhhhceee------e
Q psy7567         174 ED-----PEMK---TAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSKRKKIPKCQ------I  239 (245)
Q Consensus       174 ~~-----~~~~---~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~~~------i  239 (245)
                      ++     +...   +.|...+.++.+++|++++..+|+.|.+++|.++..+++++ +..+..+.++|++||++      .
T Consensus       193 pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d-~~~~~~kak~K~vkmliiVV~~Fa  271 (423)
T KOG4219|consen  193 PEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQD-RKHEQLKAKKKVVKMLIIVVVIFA  271 (423)
T ss_pred             ccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            22     2112   22777888889999999999999999999998886655544 45566778888888774      4


Q ss_pred             eeccCC
Q psy7567         240 LCYKNF  245 (245)
Q Consensus       240 i~~~~f  245 (245)
                      +||+|+
T Consensus       272 icWlPy  277 (423)
T KOG4219|consen  272 ICWLPY  277 (423)
T ss_pred             HhccCh
Confidence            677764

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF13853 7tm_4: Olfactory receptor Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2ks9_A 364 Solution Conformation Of Substance P In Water Compl 5e-17
2x72_A349 Crystal Structure Of The Constitutively Active E113 1e-06
2j4y_A349 Crystal Structure Of A Rhodopsin Stabilizing Mutant 1e-06
3c9m_A348 Structure Of A Mutant Bovine Rhodopsin In Hexagonal 1e-06
4a4m_A349 Crystal Structure Of The Light-Activated Constituti 2e-06
3oax_A349 Crystal Structure Of Bovine Rhodopsin With Beta-Ion 2e-06
1jfp_A348 Structure Of Bovine Rhodopsin (Dark Adapted) Length 2e-06
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 1e-05
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 2e-05
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 2e-05
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 2e-05
3kj6_A 366 Crystal Structure Of A Methylated Beta2 Adrenergic 3e-05
4ea3_B434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 4e-05
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 4e-05
2r4r_A 365 Crystal Structure Of The Human Beta2 Adrenoceptor L 5e-05
2vt4_A313 Turkey Beta1 Adrenergic Receptor With Stabilising M 5e-05
2r4s_A 342 Crystal Structure Of The Human Beta2 Adrenoceptor L 6e-05
4gbr_A309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 1e-04
2y00_B315 Turkey Beta1 Adrenergic Receptor With Stabilising M 2e-04
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 5e-04
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed With Nk1r Length = 364 Back     alignment and structure 
Iteration: 1

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 85/154 (55%), Gaps = 15/154 (9%)
Query: 84  FKGLKYISFLSSWPTQV---SAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTA 140
           + GL Y  F + +P      S Y++ A++ DRYMAI+ PL+PR+S    K VI  IW+ A
Sbjct: 99  YYGLFYCKFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLA 158
Query: 141 MVTAVPV-FVTTGQTIPNDTFYEFCEFYICGEDW-EDPE--MKTAYSILVAMLQYGVPLV 196
           ++ A P  + +T +T+P+          +C  +W E P    +  Y I V +L Y +PL+
Sbjct: 159 LLLAFPQGYYSTTETMPSRV--------VCMIEWPEHPNKIYEKVYHICVTVLIYFLPLL 210
Query: 197 VLVFTYTSIAIVVWGKQPPGEAENQRDRRMAKSK 230
           V+ + YT + I +W  + PG++ ++   +++  +
Sbjct: 211 VIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKR 244
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c, D282c Rhodopsin Mutant With Bound Galphact Peptide Length = 349 Back     alignment and structure
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant Expressed In Mammalian Cells Length = 349 Back     alignment and structure
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal Crystal Form Length = 348 Back     alignment and structure
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively Active N2c,M257y,D282c Rhodopsin Mutant In Complex With A Peptide Resembling The C-Terminus Of The Galpha-Protein Subunit (Gact) Length = 349 Back     alignment and structure
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone Length = 349 Back     alignment and structure
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted) Length = 348 Back     alignment and structure
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 5e-39
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 5e-28
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 5e-26
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-18
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 3e-17
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-15
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 8e-14
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 8e-13
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 2e-12
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 3e-12
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 6e-11
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 7e-11
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 2e-10
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 6e-10
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 2e-06
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  137 bits (348), Expect = 5e-39
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 11/148 (7%)

Query: 88  KYISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPRMSKGHAKFVIVTIWLTAMVTAVPV 147
           K+ +F        S Y++ A++ DRYMAI+ PL+PR+S    K VI  IW+ A++ A P 
Sbjct: 106 KFHNFFPIAAVFASIYSMTAVAFDRYMAIIHPLQPRLSATATKVVICVIWVLALLLAFPQ 165

Query: 148 FVTTGQTIPNDTFYEFCEFYICGEDW---EDPEMKTAYSILVAMLQYGVPLVVLVFTYTS 204
              +       T        +C  +W    +   +  Y I V +L Y +PL+V+ + YT 
Sbjct: 166 GYYS-------TTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTV 218

Query: 205 IAIVVWGKQPPGEAENQRDRRMAKSKRK 232
           + I +W  + PG++ + R      +KRK
Sbjct: 219 VGITLWASEIPGDS-SDRYHEQVSAKRK 245
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.93
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.92
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.91
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.91
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.9
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.9
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.9
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.9
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.89
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.89
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.89
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.89
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.88
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.88
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.88
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.88
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.86
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.85
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.64
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 97.38
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.93  E-value=9e-28  Score=212.35  Aligned_cols=170  Identities=20%  Similarity=0.239  Sum_probs=129.9

Q ss_pred             eehhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc------------------------------cCcee
Q psy7567          40 MKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF------------------------------KGLKY   89 (245)
Q Consensus        40 ~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l------------------------------~~C~~   89 (245)
                      ...++|++++++|++||++|++++.++++.++.... .++++.++                              ..|++
T Consensus        34 ~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~-~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C~~  112 (510)
T 4grv_A           34 LVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQST-VHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGCRG  112 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHHHH
Confidence            346789999999999999999998765544432111 00111111                              35999


Q ss_pred             echhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc--cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCccccccee
Q psy7567          90 ISFLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR--MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFY  167 (245)
Q Consensus        90 ~~~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~--~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~  167 (245)
                      ..++..++..+|++++++||+|||+||++|++++  ++++++..+++++|++++++++|+++.++....... ...+...
T Consensus       113 ~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~~~~~-~~~~~~~  191 (510)
T 4grv_A          113 YYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQNRSAD-GTHPGGL  191 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEECSSS-SCCGGGE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccccccC-CCCCCcc
Confidence            9999999999999999999999999999999984  799999999999999999999999998876543221 2222345


Q ss_pred             eecCCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Q psy7567         168 ICGEDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGK  212 (245)
Q Consensus       168 ~C~~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~  212 (245)
                      .|...++.. ....|..+.+++.|++|+++|+++|.+|++.++++
T Consensus       192 ~c~~~~~~~-~~~~~~~~~~~~~f~iP~~ii~~~Y~~I~~~l~~~  235 (510)
T 4grv_A          192 VCTPIVDTA-TVKVVIQVNTFMSFLFPMLVISILNTVIANKLTVM  235 (510)
T ss_dssp             EEEECSCHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccccccccc-hhhhhhhhhhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            677766544 34456677778889999999999999999999864
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.8
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=3.3e-21  Score=159.54  Aligned_cols=172  Identities=18%  Similarity=0.325  Sum_probs=127.2

Q ss_pred             eehhhHHHHHHHHHhhceeeEEeeecccccCccccccceeeeecc----------------------------cCceeec
Q psy7567          40 MKQNSRGVAFFVKLLQKSLSKDGSSTKSKRKSSFDHKGFVLLKNF----------------------------KGLKYIS   91 (245)
Q Consensus        40 ~~~~~~~vi~ivg~~gN~lvi~v~~~~~~~~~~~~~~~~~l~~~l----------------------------~~C~~~~   91 (245)
                      ..++++.+++++|++||+++++++.+++++++..+    .+..++                            ..|+...
T Consensus        39 ~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~----~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  114 (348)
T d1u19a_          39 MLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLN----YILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEG  114 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHH----HHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhH----HHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhh
Confidence            34667888999999999999999987666665544    233332                            4599999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCc-cccchHHHHHHHHHHHHHHHhhhHhhhccccccCCCcccccceeeec
Q psy7567          92 FLSSWPTQVSAYTLVAISIDRYMAIMWPLRPR-MSKGHAKFVIVTIWLTAMVTAVPVFVTTGQTIPNDTFYEFCEFYICG  170 (245)
Q Consensus        92 ~~~~~~~~~S~~~l~~isidRy~aI~~P~~~~-~~~~~~~~~i~~~Wi~~~~~~~p~~~~~~~~~~~~~~~~~c~~~~C~  170 (245)
                      ++...+..+|+++++++++|||.+|++|++++ .++++....+..+|..++++..|+.+.......+.. ...|.  .+.
T Consensus       115 ~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~  191 (348)
T d1u19a_         115 FFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGM-QCSCG--IDY  191 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETT-TTEEE--CCC
T ss_pred             hccccceeeecchhhhhhcccceeeeccccccccccccccccceeeehhhhheecccccccceeccCCc-ccccc--ccc
Confidence            99999999999999999999999999999985 677788888888999999999998877654432221 11111  111


Q ss_pred             CCCCChhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCCCCc
Q psy7567         171 EDWEDPEMKTAYSILVAMLQYGVPLVVLVFTYTSIAIVVWGKQPPGEA  218 (245)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~f~lP~~ii~~~y~~I~~~l~~~~~~~~~  218 (245)
                      ...........+......+.+++|++++.++|.++.++++++.++.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~~  239 (348)
T d1u19a_         192 YTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQE  239 (348)
T ss_dssp             SCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSCS
T ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccch
Confidence            112222344556667777788999999999999999988776654443