Psyllid ID: psy7576

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
Protein Sequence
TGEDKEEEEPVETRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEALFGDASDISTDDDDDGKLQVVEEEGDGEGERRERDEDARSDASRRGSDREDDEDKENRTETGEDKEEEEPVETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGDDDDDEGAISLSAIKNKYNAKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDEKSAASRSGSGKSGSDSD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHccccccccHHHccccccHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHcccccccccccccccccEEEEEcccccccccccEEEEEcccccccccccccccccccccccHHHHcHHHHHHHcccccccEEEEEcccccccEEEEccccEEEEccccEEEEEccEEEEEEccccccccccEEEEcccEEEEccEEcccEEEEcccccHHHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEccccccccccccccccccccEEEHHccHHHccHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEccccEEEcccccccccccccccHHHcccccccccEEEEEEcEEEEEEEEcccccEEEEcccEEEEEccccEEEEEcccEEEEEEccccccccEEEEEEcccEEcEEEEEcEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccccccccccccHHcccccccccccccHHHHHHHHHHHHHcccccccccccccHccccccccccccc
Coil and Loop (DISEMBL)
tgedkeeeepvetridvlrpvptcqadleplgadqHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEalfgdasdistdddddgklqvveeegdgegerrerdedarsdasrrgsdreddedkenrtetgedkeeeepvetridveipkiscdlgremhfvklpnflsvetrpfdpetyedeiedeetlDEEGRARLKLKVENTIRWRdtfnkdgdlvkesnarlvkwsdgslslhlgseifdvykqplqgdhnhlyirqgtglqgqavfrtklsfrphstesfthrkMTLSLAdrsnkttgikilgqvgydpdanrYEKIKKEEEKLRQSLRKETktkrtrekgassrlsagylegdddddegAISLSAIKNKynakknpagasgaapsrniyssdedasdlelrtkkhdkpkrvlqdsddedeksaasrsgsgksgsdsd
Flexible Loop (DISEMBL)
tgedkeeeepvetridvlrpvptCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEALFGDasdistdddddgklqvveeegdgegerrerdedarsdasrrgsdreddedkenrtetgedkeeeepvetridveiPKISCDLGREMHFVklpnflsvetrpfdpetyedeiedeetldeegrarlklkventirwrdtfnkdgdlvkeSNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSfrphstesfthrkmtlsladrsnkttgikilgqvgydpdanryekikkeeeklrqslrketktkrtrekgassrlsagylegdddddEGAISLSAIKnkynakknpagasgaapsrniysSDEDASDLelrtkkhdkpkrvlqdsddedeksaasrsgsgksgsdsd
Low Complexity Region (SEG)
TGEDKEEEEPVETRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAARVVQGEdldhhlealvalllklnaealFGdasdistdddddGKLQVVeeegdgegerrerdedarsdasrrgsdreddedKenrtetgedkeeeepvetRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFdpetyedeiedeetldeeGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLrketktkrtrekGASSRLSAGYLegdddddegAISLSAIKNKYNAKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQdsddedeksaasrsgsgksgsdsd
Disordered region (IsUnstruct)
****************VLRPVPTCQADLE*LGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEALFGD**********************************************************************IDVEIPKISCDLGREMHFVKLPNFLSVET*************************LKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSF************************TGIKILGQVGY***********************************************************************************************************************************
Disordered Region (DISOPRED)
***********ETRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDL**********************LKLNAEA*****************************************************************************EIPKISCDLGREMHFVKLPNFLSVETRPFDPETYED********************ENTIRWRDTF******VKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTES***************************************************************************************************************************************************************
Disordered Region (DISEMBL)
************TRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEALFGDASDISTDDDDDGKLQVVE**************************************************TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETY*************GRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEE**********************SRLSAGYLEGDDDDDEGAISLSAIKNKYNAK************RNIYSSDEDASDLELRTKKH********************************
Disordered Region (DISPRO)
********EPVETRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRIEVAADQLQGQTEVVQDLEAAR******************L**N***LFG******************************************************************PVETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIE*******EGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKET**********************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TGEDKEEEEPVETRIDVLRPVPTCQADLEPLGADQHRLELTEVGQEHLKPIGVLQDHLGRxxxxxxxxxxxxxxxxxxxxxRVVQGEDLDHHLEALVALLLKLNAEALFGDASDISTDDDDDGKLQVVEEEGDGEGERRERDEDARSDASRRGSDREDDEDKENRTETGEDKEEEEPVETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDxxxxxxxxxxxxxxxxxxxxxxxxKRTREKGASSRLSAGYLEGDDDDDEGAISLSAIKNKYNAKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDEKSAASRSGSGKSGSDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	481	2.2.26 [Sep-21-2011]
Q94546	725	Another transcription uni	yes	N/A	0.638	0.423	0.609	1e-105
Q6NYV9	696	RNA polymerase-associated	yes	N/A	0.600	0.415	0.640	6e-94
Q5R4D6	666	RNA polymerase-associated	yes	N/A	0.584	0.421	0.616	2e-91
Q8WVC0	666	RNA polymerase-associated	yes	N/A	0.584	0.421	0.620	1e-90
Q641X2	678	RNA polymerase-associated	yes	N/A	0.598	0.424	0.611	2e-90
Q52KV5	703	RNA polymerase-associated	N/A	N/A	0.561	0.384	0.628	2e-90
Q5XJE5	667	RNA polymerase-associated	yes	N/A	0.598	0.431	0.611	2e-90
Q54MB8	487	RNA polymerase-associated	yes	N/A	0.403	0.398	0.349	1e-25
P38439	464	RNA polymerase-associated	yes	N/A	0.378	0.392	0.301	2e-17
Q9P6R2	429	Uncharacterized protein C	yes	N/A	0.324	0.363	0.335	3e-16

>sp|Q94546|ATU_DROME Another transcription unit protein OS=Drosophila melanogaster GN=Atu PE=1 SV=2

 Score =  383 bits (983), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/325 (60%), Positives = 245/325 (75%), Gaps = 18/325 (5%)

Query: 163 ENRTETGEDKEEEEPV-ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDE 221
           E++ E+   ++E EP+ ETRIDVEIP+IS DLG+E HF+KLPNFLSV T PFDPETYEDE
Sbjct: 360 ESQVESAPKEDEPEPLPETRIDVEIPRISADLGKEQHFIKLPNFLSVVTHPFDPETYEDE 419

Query: 222 IEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIF 281
           I++EET+DEEGR R+KLKV NTIRWR+  N  GD+V+ESNAR V+WSDGS+SLHLG+EIF
Sbjct: 420 IDEEETMDEEGRQRIKLKVSNTIRWREYMNNKGDMVRESNARFVRWSDGSMSLHLGNEIF 479

Query: 282 DVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTG 341
           D Y+QPL GDHNHL++RQGTGLQGQ+VFRTKL+FRPHSTESFTH+KMT+SLADRS+KT+G
Sbjct: 480 DAYRQPLLGDHNHLFVRQGTGLQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSG 539

Query: 342 IKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKT-KRTREKGASSRLSAG----YLEG 396
           IKIL QVG DP  +R  ++++EE KLRQ++R + K+  + ++ GA   L  G    Y   
Sbjct: 540 IKILTQVGKDPTTDRPTQLREEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHD 599

Query: 397 DDDDDEGAISLSAIKNKYNAKKNPAGASGAAPSRNIYSSDED-ASDLEL-RTKKHDKPK- 453
           +  DDE AISLSAIKN+Y  KK          +  IYSSDED  SD E  R+KK DK K 
Sbjct: 600 EGSDDENAISLSAIKNRY--KKGSGAGQAEVKASTIYSSDEDEGSDFEARRSKKVDKAKA 657

Query: 454 -RVLQDSDDEDEKSAASRSGSGKSG 477
            + L+DSD E      S +GS KSG
Sbjct: 658 SKALRDSDSE------SDAGSAKSG 676

Drosophila melanogaster (taxid: 7227)

>sp|Q6NYV9|LEO1_DANRE RNA polymerase-associated protein LEO1 OS=Danio rerio GN=leo1 PE=1 SV=1

 Score =  345 bits (884), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 194/303 (64%), Positives = 234/303 (77%), Gaps = 14/303 (4%)

Query: 171 DKEEEEPV-ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLD 229
           D+ EEEP  ETRI+VEIPK+S DLG +++FVKLPNFLSVE RPFDP+ YEDE EDEE LD
Sbjct: 324 DQPEEEPAPETRIEVEIPKVSTDLGSDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLD 383

Query: 230 EEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQ 289
           EEGR RLKLKVENTIRWR   +++G+ VKESNAR+VKWSDGS+SLHLG+E+FDVYK PLQ
Sbjct: 384 EEGRTRLKLKVENTIRWRSRRDEEGNEVKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQ 443

Query: 290 GDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVG 349
           GDHNHL+IRQGTGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G
Sbjct: 444 GDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAG 503

Query: 350 YDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGD--DDDDEG--AI 405
            DP++ R E IKKEEE+LR S+R+E++ +R REK     L+AGYLE D  D+D+EG  +I
Sbjct: 504 RDPESQRNEMIKKEEERLRASIRRESQQRRMREKQHQRGLNAGYLEPDRYDEDEEGEESI 563

Query: 406 SLSAIKNKYNAKKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDE 464
           SL+AIK+KY       G  G    R  IYSSD D    E + ++  K KR+  DSD+E E
Sbjct: 564 SLAAIKSKYK------GGGGLREERARIYSSDSDEGSDEDKAQRLMKAKRL--DSDEEGE 615

Query: 465 KSA 467
            S 
Sbjct: 616 NSG 618

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3) (By similarity). PAF1C seems to be required for multiple steps in cardiac formation. Involved in heart development and required for differentiation of the atrioventricular boundary. Required for neural crest cell development.

Danio rerio (taxid: 7955)

>sp|Q5R4D6|LEO1_PONAB RNA polymerase-associated protein LEO1 OS=Pongo abelii GN=LEO1 PE=2 SV=1

 Score =  336 bits (862), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/295 (61%), Positives = 223/295 (75%), Gaps = 14/295 (4%)

Query: 170 EDKEEEEPV-ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETL 228
           +D++EEEP+ ETRI+VEIPK++ DLG +++FVKLPNFLSVE RPFDP+ YEDE EDEE L
Sbjct: 345 QDQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEML 404

Query: 229 DEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPL 288
           D EGR RLKLKVENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PL
Sbjct: 405 DGEGRTRLKLKVENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPL 464

Query: 289 QGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQV 348
           QGDHNHL+IRQGTGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   
Sbjct: 465 QGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMA 524

Query: 349 GYDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGDDDD----DEGA 404
           G DP+  R E IKKEEE+LR S+R+E++ +R REK     LSA YLE D  D     E +
Sbjct: 525 GRDPECQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEES 584

Query: 405 ISLSAIKNKYNAKKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRVLQD 458
           ISL+AIKN+Y          G    R  IYSSD D    E + ++  K K++  D
Sbjct: 585 ISLAAIKNRYKG--------GIREERARIYSSDSDEGSEEDKAQRLLKAKKLTSD 631

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Involved in polyadenylation of mRNA precursors. Connects PAF1C to Wnt signaling.

Pongo abelii (taxid: 9601)

>sp|Q8WVC0|LEO1_HUMAN RNA polymerase-associated protein LEO1 OS=Homo sapiens GN=LEO1 PE=1 SV=1

 Score =  333 bits (855), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 183/295 (62%), Positives = 224/295 (75%), Gaps = 14/295 (4%)

Query: 170 EDKEEEEPV-ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETL 228
           +D++EEEP+ ETRI+VEIPK++ DLG +++FVKLPNFLSVE RPFDP+ YEDE EDEE L
Sbjct: 345 QDQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEML 404

Query: 229 DEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPL 288
           DEEGR RLKLKVENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PL
Sbjct: 405 DEEGRTRLKLKVENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPL 464

Query: 289 QGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQV 348
           QGDHNHL+IRQGTGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   
Sbjct: 465 QGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMA 524

Query: 349 GYDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGDDDD----DEGA 404
           G DP+  R E IKKEEE+LR S+R+E++ +R REK     LSA YLE D  D     E +
Sbjct: 525 GRDPECQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEES 584

Query: 405 ISLSAIKNKYNAKKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRVLQD 458
           ISL+AIKN+Y          G    R  IYSSD D    E + ++  K K++  D
Sbjct: 585 ISLAAIKNRYKG--------GIREERARIYSSDSDEGSEEDKAQRLLKAKKLTSD 631

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Involved in polyadenylation of mRNA precursors. Connects PAF1C to Wnt signaling.

Homo sapiens (taxid: 9606)

>sp|Q641X2|LEO1_RAT RNA polymerase-associated protein LEO1 OS=Rattus norvegicus GN=Leo1 PE=2 SV=1

 Score =  333 bits (854), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/304 (61%), Positives = 230/304 (75%), Gaps = 16/304 (5%)

Query: 170 EDKEEEEPV-ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETL 228
           +D++EEEP+ ETRI+VEIPK++ DLG +++FVKLPNFLSVE RPFDP+ YEDE EDEE L
Sbjct: 357 QDQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEML 416

Query: 229 DEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPL 288
           DEEGR RLKLKVENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PL
Sbjct: 417 DEEGRTRLKLKVENTIRWRMRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPL 476

Query: 289 QGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQV 348
           QGDHNHL+IRQGTGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   
Sbjct: 477 QGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMA 536

Query: 349 GYDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGDDDD----DEGA 404
           G DP+  R E IKKEEE+LR S+R+E++ +R REK     LSA YLE D  D     E +
Sbjct: 537 GRDPECQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEES 596

Query: 405 ISLSAIKNKYNAKKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRVLQDSDDED 463
           +SL+AIKN+Y          G    R  IYSSD D    E + ++  K K++  +SD+E 
Sbjct: 597 VSLAAIKNRYKG--------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL--NSDEEG 646

Query: 464 EKSA 467
           E S 
Sbjct: 647 ESSG 650

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Involved in polyadenylation of mRNA precursors. Connects PAF1C to Wnt signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q52KV5|LEO1_XENLA RNA polymerase-associated protein LEO1 OS=Xenopus laevis GN=leo1 PE=2 SV=1

 Score =  333 bits (854), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/288 (62%), Positives = 220/288 (76%), Gaps = 18/288 (6%)

Query: 174 EEEPVETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGR 233
           EE   ETRI+VEIPK++ DLG +++FVKLPNFLSVE RPFDP+ YEDE EDEE LDEEGR
Sbjct: 381 EETAPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGR 440

Query: 234 ARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHN 293
            RLKLKVENTIRWR   +++G+ V++SNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHN
Sbjct: 441 TRLKLKVENTIRWRTRKDEEGNDVRDSNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHN 500

Query: 294 HLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPD 353
           HL+IRQGTGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+
Sbjct: 501 HLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPE 560

Query: 354 ANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGD--DDDDEG--AISLSA 409
           + R E IKKEEE+LR S+R+E++ +R REK     LSA YLE D  DD++EG  +ISL+A
Sbjct: 561 SQRSEMIKKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRYDDEEEGDESISLAA 620

Query: 410 IKNKYNAKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQ 457
           IKN+Y          G      IYSSD D    E      DK +R+L+
Sbjct: 621 IKNRYKG--------GREERARIYSSDSDEGSDE------DKAQRLLK 654

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II. PAF1C associates with RNA polymerase II, is involved in transcriptional elongation and in histone modifications including methylation on histone H3 'Lys-4' (H3K4me3).

Xenopus laevis (taxid: 8355)

>sp|Q5XJE5|LEO1_MOUSE RNA polymerase-associated protein LEO1 OS=Mus musculus GN=Leo1 PE=1 SV=2

 Score =  333 bits (853), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 186/304 (61%), Positives = 230/304 (75%), Gaps = 16/304 (5%)

Query: 170 EDKEEEEPV-ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETL 228
           +D++EEEP+ ETRI+VEIPK++ DLG +++FVKLPNFLSVE RPFDP+ YEDE EDEE L
Sbjct: 346 QDQQEEEPIPETRIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEML 405

Query: 229 DEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPL 288
           DEEGR RLKLKVENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PL
Sbjct: 406 DEEGRTRLKLKVENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPL 465

Query: 289 QGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQV 348
           QGDHNHL+IRQGTGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   
Sbjct: 466 QGDHNHLFIRQGTGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMA 525

Query: 349 GYDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGDDDD----DEGA 404
           G DP+  R E IKKEEE+LR S+R+E++ +R REK     LSA YLE D  D     E +
Sbjct: 526 GRDPECQRTEMIKKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEES 585

Query: 405 ISLSAIKNKYNAKKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRVLQDSDDED 463
           +SL+AIKN+Y          G    R  IYSSD D    E + ++  K K++  +SD+E 
Sbjct: 586 VSLAAIKNRYKG--------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL--NSDEEG 635

Query: 464 EKSA 467
           E S 
Sbjct: 636 ESSG 639

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Involved in polyadenylation of mRNA precursors. Connects PAF1C to Wnt signaling.

Mus musculus (taxid: 10090)

>sp|Q54MB8|LEO1_DICDI RNA polymerase-associated protein LEO1 OS=Dictyostelium discoideum GN=leo1 PE=3 SV=1

 Score =  118 bits (295), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/203 (34%), Positives = 120/203 (59%), Gaps = 9/203 (4%)

Query: 200 VKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKE 259
           +KL N L ++ +PFDP T+EDE    E ++  G  + K  VE+ IRWR   + +G   KE
Sbjct: 185 LKLLNILGIQPKPFDPITFEDE----EAMN--GDEKSKFNVESVIRWRWGLDLNGRPAKE 238

Query: 260 SNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHS 319
           SN RLV WSDGS  L++G+E+ ++ +QPLQ +  ++Y  Q   ++ +    ++LS RP +
Sbjct: 239 SNTRLVTWSDGSSHLYIGNEVLEIKEQPLQNEQFYVYSSQDGFIECEGKIDSRLSIRPTN 298

Query: 320 TESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKTKR 379
            +S  H++++ ++A R+ K + IK +     DP+  + ++ K+  + LR+  +++  + R
Sbjct: 299 IKSKVHQRLSENVAKRTVKVSKIKSI-HTTLDPEKEKEKREKELLDALREKKKQKDDSYR 357

Query: 380 TR--EKGASSRLSAGYLEGDDDD 400
                 G S  L+A YLE DDDD
Sbjct: 358 PNRGRGGKSGSLTASYLENDDDD 380

The PAF1 complex is a multifunctional complex. May be involved in both initiation and elongation, histone methylation and RNA processing.

Dictyostelium discoideum (taxid: 44689)

>sp|P38439|LEO1_YEAST RNA polymerase-associated protein LEO1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LEO1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 106/196 (54%), Gaps = 14/196 (7%)

Query: 196 EMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARL--KLKVENTIRWRDTFNKD 253
           E+ + ++PNFL+++  PFDP ++E ++ +  +       +L  +L  ENT+RWR + +KD
Sbjct: 167 EIFYARIPNFLTIDPIPFDPPSFEAKVNERASNSASREDQLDDRLIDENTVRWRYSRDKD 226

Query: 254 GDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQ-------GQ 306
             + KESN ++V+WSDG+ SL +G E  D+    L  D ++ ++      Q       G 
Sbjct: 227 QHVFKESNTQIVQWSDGTYSLKVGEECTDI----LVNDTSNTFLTVSHDQQELIQCYEGG 282

Query: 307 AVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEK 366
            + +T L F P ST S  H+K++ ++  R+ + +       V  DP+  + E  +K+ + 
Sbjct: 283 EIKKT-LMFIPTSTNSKIHQKLSKAVIRRNQRQSKGPGTYIVSMDPEVEKKELERKQSQI 341

Query: 367 LRQSLRKETKTKRTRE 382
           LR   R++ K K  +E
Sbjct: 342 LRDRRRRQLKEKEKQE 357

The PAF1 complex is a multifunctional complex. Involved in transcription initiation via genetic interactions with TATA-binding proteins. Involved in elongation. It regulates 3'-end formation of snR47 by modulating the recruitment or stable association of NRD1 and NAB3 with RNA polymerase II. Also has a role in transcription-coupled histone modification. Required for activation of RAD6 ubiquitin conjugate and the BRE1 ubiquitin ligase which ubiquitinate 'Lys-126' histone H2B. Activates the SET1 histone methyltransferase complex for methylation of 'Lys-4' of histone H3 and for methylation of 'Lys-73' of histone H3 by DOT1 and 'Lys-36' of histone H3 by SET2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9P6R2|YOH8_SCHPO Uncharacterized protein C13E7.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC13E7.08c PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 91/176 (51%), Gaps = 20/176 (11%)

Query: 164 NRTETGEDKEEEEPVETRIDVEIP--KISCDLGREMHFVKLPNFLSVETRPFDPETYEDE 221
           N  E  E  E + PV+  ++V +P  K       ++    +PNFLSVE  P+DPE Y  E
Sbjct: 53  NTEEATEAPEADVPVKKVLEVAVPNFKSPASASNDVFHAHIPNFLSVEQTPYDPEQYAAE 112

Query: 222 IEDEETL---DEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGS 278
            E +  L   D     R+K KV+NT+RWR      G    +SNA++V+WSDGS SL +G+
Sbjct: 113 AEADAALLEHDAHWGQRIKHKVDNTVRWR--LGPSGSY--QSNAQIVQWSDGSYSLRIGN 168

Query: 279 EIFD----VYKQP--LQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKM 328
           +I+D    +  QP  +   H   ++     L+ Q  F++  +F P +  + T  K+
Sbjct: 169 DIYDTQNKLISQPTFVTASHEAQHL-----LRVQTSFKSSFTFLPSAINTATRSKL 219


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.130    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 190,531,318
Number of Sequences: 539616
Number of extensions: 9060025
Number of successful extensions: 72240
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 1015
Number of HSP's that attempted gapping in prelim test: 49397
Number of HSP's gapped (non-prelim): 15319
length of query: 481
length of database: 191,569,459
effective HSP length: 121
effective length of query: 360
effective length of database: 126,275,923
effective search space: 45459332280
effective search space used: 45459332280
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
350407166	499	PREDICTED: another transcription unit pr	0.594	0.573	0.723	1e-116
307178673	1128	Another transcription unit protein [Camp	0.596	0.254	0.706	1e-115
380023451	625	PREDICTED: uncharacterized protein LOC10	0.573	0.441	0.731	1e-114
328792720	624	PREDICTED: hypothetical protein LOC55190	0.573	0.442	0.731	1e-114
383856691	551	PREDICTED: another transcription unit pr	0.733	0.640	0.608	1e-114
242018542	748	RNA polymerase-associated protein LEO1,	0.702	0.451	0.629	1e-114
328700005	616	PREDICTED: RNA polymerase-associated pro	0.577	0.451	0.719	1e-113
326504334	596	predicted protein [Hordeum vulgare subsp	0.577	0.466	0.716	1e-113
332019967	713	RNA polymerase-associated protein LEO1 [	0.565	0.381	0.699	1e-112
307199108	717	Another transcription unit protein [Harp	0.561	0.376	0.735	1e-111

>gi|350407166|ref|XP_003488006.1| PREDICTED: another transcription unit protein-like [Bombus impatiens]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/300 (72%), Positives = 246/300 (82%), Gaps = 14/300 (4%)

Query: 180 TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLK 239
           TRIDVEIPKIS DLGRE+HFVKLPNFLSVETRPFD ETYEDEI++EETLDEEGRARLKLK
Sbjct: 195 TRIDVEIPKISTDLGREIHFVKLPNFLSVETRPFDTETYEDEIDEEETLDEEGRARLKLK 254

Query: 240 VENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQ 299
           VENT+RW++TF++ G ++KESNAR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQ
Sbjct: 255 VENTLRWKETFDEQGKVIKESNARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQ 314

Query: 300 GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEK 359
           GTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE 
Sbjct: 315 GTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQKTSGIKVLSQVGTNPDQNRYEM 374

Query: 360 IKKEEEKLRQSLRKETKTKR-TREKGASSRLSAGY----LEGDDDDDEGAISLSAIKNKY 414
           IKKEEEKLR ++R ++KTK+ T  +G + R   GY       D  DDEGAISL+AIKNKY
Sbjct: 375 IKKEEEKLRMAMRVQSKTKKSTAGRGTTGRSVGGYGADAYHDDGSDDEGAISLAAIKNKY 434

Query: 415 NAKKN-PAGASGAAPSRNIYSSDEDASDLE-LRTKKHDKPKRVLQDSDDEDEKSAASRSG 472
               N P  AS      NIYSSDE+ SD E LR KK+ K K VL+DSD+E    +AS SG
Sbjct: 435 KKGMNIPVKAS------NIYSSDEEGSDFETLRPKKNIKGK-VLKDSDEESNSRSASESG 487

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178673|gb|EFN67312.1| Another transcription unit protein [Camponotus floridanus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/300 (70%), Positives = 244/300 (81%), Gaps = 13/300 (4%)

Query: 180  TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLK 239
            TRIDVEIPKI+ DLGRE+HFVKLPNFLSVETRPFD ETYEDEI++EETLDEEGRARLKLK
Sbjct: 824  TRIDVEIPKITTDLGREIHFVKLPNFLSVETRPFDHETYEDEIDEEETLDEEGRARLKLK 883

Query: 240  VENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQ 299
            VENT+RW++TFN DG +VKESNAR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQ
Sbjct: 884  VENTLRWKETFNDDGKVVKESNARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQ 943

Query: 300  GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEK 359
            GTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE 
Sbjct: 944  GTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQKTSGIKVLSQVGMNPDQNRYEM 1003

Query: 360  IKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGD---DD--DDEGAISLSAIKNKY 414
            IKKEEEKLR ++R + KTK++     ++  + G   GD   DD  DDEGAISL+AIKNKY
Sbjct: 1004 IKKEEEKLRMAMRVQNKTKKSTSGIRNTNRTTGAYSGDAYHDDGSDDEGAISLAAIKNKY 1063

Query: 415  NAKKNPAGASGAAPSR--NIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDEKSAASRSG 472
              KK  A    A PS+  NIYSSDE+ SD+E    K +   + L+DSD+E     ++ SG
Sbjct: 1064 --KKGIA----AIPSKASNIYSSDEEGSDIETHRPKKNIKGKALKDSDEESNSETSAGSG 1117

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023451|ref|XP_003695536.1| PREDICTED: uncharacterized protein LOC100872303 [Apis florea]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/290 (73%), Positives = 240/290 (82%), Gaps = 14/290 (4%)

Query: 180 TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLK 239
           TRIDVEIPKI+ DLGRE+HFVKLPNFLSVETRPFD ETYEDEI++EETLDEEGRARLKLK
Sbjct: 322 TRIDVEIPKITTDLGREIHFVKLPNFLSVETRPFDTETYEDEIDEEETLDEEGRARLKLK 381

Query: 240 VENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQ 299
           VENT+RW++TF+  G ++KESNAR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQ
Sbjct: 382 VENTLRWKETFDDQGKVIKESNARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQ 441

Query: 300 GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEK 359
           GTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE 
Sbjct: 442 GTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQKTSGIKVLSQVGTNPDQNRYEM 501

Query: 360 IKKEEEKLRQSLRKETKTKR-TREKGASSRLSAGY----LEGDDDDDEGAISLSAIKNKY 414
           IKKEEEKLR ++R ++KTK+ T  +G + R   GY       D  DDEGAISL+AIKNKY
Sbjct: 502 IKKEEEKLRMAMRVQSKTKKSTASRGTTGRSVGGYGGDTYHDDGSDDEGAISLAAIKNKY 561

Query: 415 NAKKN-PAGASGAAPSRNIYSSDEDASDLE-LRTKKHDKPKRVLQDSDDE 462
               N P  AS      NIYSSDE+ SD E LR KK+ K K VL+DSD+E
Sbjct: 562 KKGMNIPVKAS------NIYSSDEEGSDFETLRPKKNIKGK-VLKDSDEE 604

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792720|ref|XP_624295.3| PREDICTED: hypothetical protein LOC551906 [Apis mellifera]

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/290 (73%), Positives = 240/290 (82%), Gaps = 14/290 (4%)

Query: 180 TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLK 239
           TRIDVEIPKI+ DLGRE+HFVKLPNFLSVETRPFD ETYEDEI++EETLDEEGRARLKLK
Sbjct: 321 TRIDVEIPKITTDLGREIHFVKLPNFLSVETRPFDTETYEDEIDEEETLDEEGRARLKLK 380

Query: 240 VENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQ 299
           VENT+RW++TF+  G ++KESNAR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQ
Sbjct: 381 VENTLRWKETFDDQGKVIKESNARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQ 440

Query: 300 GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEK 359
           GTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE 
Sbjct: 441 GTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQKTSGIKVLSQVGTNPDQNRYEM 500

Query: 360 IKKEEEKLRQSLRKETKTKR-TREKGASSRLSAGY----LEGDDDDDEGAISLSAIKNKY 414
           IKKEEEKLR ++R ++KTK+ T  +G + R   GY       D  DDEGAISL+AIKNKY
Sbjct: 501 IKKEEEKLRMAMRVQSKTKKSTASRGTTGRSVGGYGGDTYHDDGSDDEGAISLAAIKNKY 560

Query: 415 NAKKN-PAGASGAAPSRNIYSSDEDASDLE-LRTKKHDKPKRVLQDSDDE 462
               N P  AS      NIYSSDE+ SD E LR KK+ K K VL+DSD+E
Sbjct: 561 KKGMNIPVKAS------NIYSSDEEGSDFETLRPKKNIKGK-VLKDSDEE 603

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856691|ref|XP_003703841.1| PREDICTED: another transcription unit protein-like [Megachile rotundata]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/386 (60%), Positives = 277/386 (71%), Gaps = 33/386 (8%)

Query: 101 LKLNAEALFGDASDISTDDDDDG---KLQVVEEEGDGEGERRERDEDARSDASRRGSDRE 157
           L   A+ALFGDASDISTDD+ D    K +    +       R + +      S+  S   
Sbjct: 149 LAPTADALFGDASDISTDDEKDKEERKREKSLSKSRSRSRSRSKSKSRSRSRSKSRSRSR 208

Query: 158 DDEDKENRTETGEDKEEEEPVE----------------TRIDVEIPKISCDLGREMHFVK 201
                 +R+++G +   +  +E                TRIDVEIPKI+ DLGRE+HFVK
Sbjct: 209 SKSRSPDRSDSGGEGPSQAVIEDDVDKEKEEEPEPPPETRIDVEIPKITTDLGREIHFVK 268

Query: 202 LPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESN 261
           LPNFLSVETRPFD ETYEDEI++EETLDEEGRARLKLKVENT+RW++TF+ +G +VKESN
Sbjct: 269 LPNFLSVETRPFDTETYEDEIDEEETLDEEGRARLKLKVENTLRWKETFDDEGKVVKESN 328

Query: 262 ARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTE 321
           AR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKL+FRPHSTE
Sbjct: 329 ARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLTFRPHSTE 388

Query: 322 SFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKTKR-T 380
           SFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE IKKEEEKLR ++R ++KTK+ T
Sbjct: 389 SFTHRKMTMSLADRSQKTSGIKVLSQVGTNPDQNRYEMIKKEEEKLRMAMRVQSKTKKST 448

Query: 381 REKGASSRLSAGY----LEGDDDDDEGAISLSAIKNKYNAKKN-PAGASGAAPSRNIYSS 435
             +G + R  +GY       D  DDEGAISL+AIKNKY    N P  AS      NIYSS
Sbjct: 449 AGRGTTGRSVSGYGGDAYHDDGSDDEGAISLAAIKNKYKKGINIPVKAS------NIYSS 502

Query: 436 DEDASDLE-LRTKKHDKPKRVLQDSD 460
           DE+ SD E LR KK+ K K VL+DSD
Sbjct: 503 DEEGSDFETLRPKKNIKGK-VLKDSD 527

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018542|ref|XP_002429733.1| RNA polymerase-associated protein LEO1, putative [Pediculus humanus corporis] gi|212514745|gb|EEB16995.1| RNA polymerase-associated protein LEO1, putative [Pediculus humanus corporis]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/351 (62%), Positives = 271/351 (77%), Gaps = 13/351 (3%)

Query: 101 LKLNAEALFGDASDISTDDDDDGK--LQVVEEEGDGEGERRERDEDARSDASRRGSDRED 158
           L ++AEALFGDASDIS+D++   K  L+   E  D + +  E D +++ + S    D + 
Sbjct: 361 LVIDAEALFGDASDISSDEEGRKKKGLKKHVESEDNKSQGEESDAESQKEKS---DDEKI 417

Query: 159 DEDKENRTETGEDKEEEEPVETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETY 218
           D D + + E  E+  EE   ETRIDVEIPKI+ DLGR++HFVKLPNFLSVETRPF+P TY
Sbjct: 418 DMDGDEKDEDKENIPEEPHPETRIDVEIPKITTDLGRDLHFVKLPNFLSVETRPFEPSTY 477

Query: 219 EDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGS 278
           EDEI++EETLDEEGRARLKLKVENTIRW++   ++G+  K+SNAR VKWSDGS+SLHLGS
Sbjct: 478 EDEIDEEETLDEEGRARLKLKVENTIRWKEVTKQNGEFEKQSNARFVKWSDGSMSLHLGS 537

Query: 279 EIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNK 338
           EIFDVYKQPLQGDHNHL+IRQGTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS K
Sbjct: 538 EIFDVYKQPLQGDHNHLFIRQGTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQK 597

Query: 339 TTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLE--- 395
           T GIK+L  VG DP+A+R E IKKEEE+L+ S+R+E+K +R REK A   LSAGYLE   
Sbjct: 598 TAGIKVLSLVGKDPEAHRGELIKKEEERLKASVRRESKQRRIREKSAHRGLSAGYLEPDR 657

Query: 396 -GDDDDDEGAISLSAIKNKYNAKKNPAGASGAAPSRNIYSSDEDASDLELR 445
            GD D DE  IS++AIK ++  K N +G   +    +IYSSDE+ SD+E R
Sbjct: 658 YGDLDSDEEGISINAIKKQHRNKLNNSGDDRS----HIYSSDEEGSDIETR 704

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328700005|ref|XP_001951223.2| PREDICTED: RNA polymerase-associated protein LEO1-like [Acyrthosiphon pisum]

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/289 (71%), Positives = 246/289 (85%), Gaps = 11/289 (3%)

Query: 179 ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKL 238
           E RI VEIPKIS DLG ++HFVKLPNFLSVETRP+D ETYEDEI++EETLDEEGRAR+KL
Sbjct: 335 ERRIAVEIPKISVDLGSDLHFVKLPNFLSVETRPYDRETYEDEIDEEETLDEEGRARVKL 394

Query: 239 KVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIR 298
           KVENTIRWR+ F+KDG++VKESN R++KWSDGS+SLHLGSEIFDVYKQPL GDHNHL+IR
Sbjct: 395 KVENTIRWREVFDKDGNVVKESNTRVIKWSDGSMSLHLGSEIFDVYKQPLVGDHNHLFIR 454

Query: 299 QGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYE 358
           QGTGLQGQAVFRTKLSFRPHSTESFTHRK+TLSLADRS K++GIK+L QVG DPDANRYE
Sbjct: 455 QGTGLQGQAVFRTKLSFRPHSTESFTHRKITLSLADRSQKSSGIKVLSQVGADPDANRYE 514

Query: 359 KIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEG---DDDDDEGAISLSAIKNKYN 415
           KIK+EEEKLRQS+RKETK KR RE+GA+S LS+ YLE    D  DDE AISLSAIKNK+N
Sbjct: 515 KIKREEEKLRQSMRKETKVKRARERGANSNLSSSYLEPEREDGSDDENAISLSAIKNKFN 574

Query: 416 AKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDE 464
            K     +       NIYSS++D+SD++ + K+     R++ DS+++D+
Sbjct: 575 KK-----SVSKIDKSNIYSSEDDSSDMDTKKKRQS---RIVSDSEEDDD 615

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326504334|dbj|BAJ90999.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/289 (71%), Positives = 246/289 (85%), Gaps = 11/289 (3%)

Query: 179 ETRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKL 238
           E RI VEIPKIS DLG ++HFVKLPNFLSVETRP+D ETYEDEI++EETLDEEGRAR+KL
Sbjct: 315 ERRIAVEIPKISVDLGSDLHFVKLPNFLSVETRPYDRETYEDEIDEEETLDEEGRARVKL 374

Query: 239 KVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIR 298
           KVENTIRWR+ F+ DG++VKESN R++KWSDGS+SLHLGSEIFDVYKQPL GDHNHL+IR
Sbjct: 375 KVENTIRWREVFDNDGNVVKESNTRVIKWSDGSMSLHLGSEIFDVYKQPLVGDHNHLFIR 434

Query: 299 QGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYE 358
           QGTGLQGQAVFRTKLSFRPHSTESFTHRK+TLSLADRS K++GIK+L QVG DPDANRYE
Sbjct: 435 QGTGLQGQAVFRTKLSFRPHSTESFTHRKITLSLADRSQKSSGIKVLSQVGADPDANRYE 494

Query: 359 KIKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEG---DDDDDEGAISLSAIKNKYN 415
           KIK+EEEKLRQS+RKETK KR RE+GA+S LS+ YLE    D  DDE AISLSAIKNK+N
Sbjct: 495 KIKREEEKLRQSMRKETKVKRARERGANSNLSSSYLEPEREDGSDDENAISLSAIKNKFN 554

Query: 416 AKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQDSDDEDE 464
            K     ++      NIYSS++D+SD++ + K+     R++ DS+++D+
Sbjct: 555 KK-----SASKIDKSNIYSSEDDSSDMDTKKKRQS---RIVSDSEEDDD 595

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332019967|gb|EGI60427.1| RNA polymerase-associated protein LEO1 [Acromyrmex echinatior]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/283 (69%), Positives = 233/283 (82%), Gaps = 11/283 (3%)

Query: 180 TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLK 239
           TRIDVEIPKI+ DLGRE+HFVKLPNFLSVETRPFD +TYEDEI++EETLDEEGRARLKLK
Sbjct: 411 TRIDVEIPKITTDLGREIHFVKLPNFLSVETRPFDHDTYEDEIDEEETLDEEGRARLKLK 470

Query: 240 VENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQ 299
           VENT+RW+++F+ DG +VK+SNAR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQ
Sbjct: 471 VENTLRWKESFSDDGKMVKQSNARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQ 530

Query: 300 GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEK 359
           GTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE 
Sbjct: 531 GTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQKTSGIKVLSQVGMNPDQNRYEM 590

Query: 360 IKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGD---DD--DDEGAISLSAIKNKY 414
           IKKEEEKLR ++R + KTK++     ++  + G   GD   DD  DD+GAISL+AIKNKY
Sbjct: 591 IKKEEEKLRMAMRVQNKTKKSTSGSRNTNRATGAYSGDAYHDDGSDDDGAISLAAIKNKY 650

Query: 415 NAKKNPAGASGAAPSRNIYSSDEDASDLELRTKKHDKPKRVLQ 457
                P+ AS      NIYSSDE+ SD+E    K +   ++L+
Sbjct: 651 KKGAIPSKAS------NIYSSDEEGSDIETHRPKKNIKGKILK 687

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199108|gb|EFN79818.1| Another transcription unit protein [Harpegnathos saltator]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/280 (73%), Positives = 234/280 (83%), Gaps = 10/280 (3%)

Query: 180 TRIDVEIPKISCDLGREMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLK 239
           TRIDVEIPKI+ DLGRE+HFVKLPNFLSVETRPFD ETYEDEI++EETLDEEGRARLKLK
Sbjct: 413 TRIDVEIPKITTDLGREIHFVKLPNFLSVETRPFDHETYEDEIDEEETLDEEGRARLKLK 472

Query: 240 VENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQ 299
           VENT+RW+DTFN +G +VKESNAR VKWSDGS+SLHLGSEIFDVYKQPLQGDHNHLYIRQ
Sbjct: 473 VENTLRWKDTFNDEGKIVKESNARFVKWSDGSMSLHLGSEIFDVYKQPLQGDHNHLYIRQ 532

Query: 300 GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEK 359
           GTGLQGQAVFRTKL+FRPHSTESFTHRKMT+SLADRS KT+GIK+L QVG +PD NRYE 
Sbjct: 533 GTGLQGQAVFRTKLTFRPHSTESFTHRKMTMSLADRSQKTSGIKVLSQVGMNPDQNRYEM 592

Query: 360 IKKEEEKLRQSLRKETKTKRTREKGASSRLSAGYLEGD---DD--DDEGAISLSAIKNKY 414
           IKKEEEKLR ++R ++KTK++     ++  +AG   GD   DD  DDEGAISL+AIKNKY
Sbjct: 593 IKKEEEKLRMAMRVQSKTKKSIGGTRNTGRTAGAYSGDPYHDDGSDDEGAISLAAIKNKY 652

Query: 415 NAKKNPAGASGAAPSRNIYSSDEDASDLE-LRTKKHDKPK 453
                 A  + +    NIYSSDE+ SD E LR KK+ K K
Sbjct: 653 KKGAAIAAKAAS----NIYSSDEEGSDFETLRPKKNFKGK 688

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
FB|FBgn0019637	725	Atu "Another transcription uni	0.563	0.373	0.571	2.8e-80
ZFIN|ZDB-GENE-040426-2435	696	leo1 "Leo1, Paf1/RNA polymeras	0.559	0.386	0.553	1.4e-74
UNIPROTKB|E1BV70	657	LOC769405 "Uncharacterized pro	0.555	0.406	0.542	5.3e-73
UNIPROTKB|Q8WVC0	666	LEO1 "RNA polymerase-associate	0.555	0.400	0.539	6.7e-73
UNIPROTKB|F1RZB7	666	LEO1 "Uncharacterized protein"	0.555	0.400	0.539	6.7e-73
UNIPROTKB|Q5R4D6	666	LEO1 "RNA polymerase-associate	0.555	0.400	0.539	6.7e-73
MGI|MGI:2685031	667	Leo1 "Leo1, Paf1/RNA polymeras	0.555	0.400	0.535	8.6e-73
RGD|1549772	678	Leo1 "Leo1, Paf1/RNA polymeras	0.555	0.393	0.535	8.6e-73
UNIPROTKB|Q641X2	678	Leo1 "RNA polymerase-associate	0.555	0.393	0.535	8.6e-73
UNIPROTKB|Q52KV5	703	leo1 "RNA polymerase-associate	0.553	0.378	0.540	2e-71

FB|FBgn0019637 Atu "Another transcription unit" [Drosophila melanogaster (taxid:7227)]

 Score = 763 (273.6 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 160/280 (57%), Positives = 189/280 (67%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RIDVEIP+IS DLG+E HF+KLPNFLSV T PF                  GR R+KLKV
Sbjct:   379 RIDVEIPRISADLGKEQHFIKLPNFLSVVTHPFDPETYEDEIDEEETMDEEGRQRIKLKV 438

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
              NTIRWR+  N  GD+V+ESNAR V+WSDGS+SLHLG+EIFD Y+QPL GDHNHL++RQG
Sbjct:   439 SNTIRWREYMNNKGDMVRESNARFVRWSDGSMSLHLGNEIFDAYRQPLLGDHNHLFVRQG 498

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQ+VFRTKL+FRPHSTESFTH+KMT+SLADRS+KT+GIKIL QVG DP  +R  ++
Sbjct:   499 TGLQGQSVFRTKLTFRPHSTESFTHKKMTMSLADRSSKTSGIKILTQVGKDPTTDRPTQL 558

Query:   361 KKEEEKLRQSLXXXXXXXXXXXX-GASSRLSAG----YLXXXXXXXXXAISLSAIKNKYN 415
             ++EE KLRQ++             GA   L  G    Y          AISLSAIKN+Y 
Sbjct:   559 REEEAKLRQAMRNQHKSLPKKKKPGAGEPLIGGGTSSYQHDEGSDDENAISLSAIKNRY- 617

Query:   416 AKKNPAGASGAAPSRNIYSSDED-ASDLELR-TKKHDKPK 453
              KK          +  IYSSDED  SD E R +KK DK K
Sbjct:   618 -KKGSGAGQAEVKASTIYSSDEDEGSDFEARRSKKVDKAK 656

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

ZFIN|ZDB-GENE-040426-2435 leo1 "Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 718 (257.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 155/280 (55%), Positives = 186/280 (66%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK+S DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   335 RIEVEIPKVSTDLGSDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 394

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ VKESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   395 ENTIRWRSRRDEEGNEVKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 454

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP++ R E I
Sbjct:   455 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRNEMI 514

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 L+AGYL             +ISL+AIK+KY  
Sbjct:   515 KKEEERLRASIRRESQQRRMREKQHQRGLNAGYLEPDRYDEDEEGEESISLAAIKSKYK- 573

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                  G  G    R  IYSSD D    E + ++  K KR+
Sbjct:   574 -----GGGGLREERARIYSSDSDEGSDEDKAQRLMKAKRL 608

GO:0003674 "molecular_function" evidence=ND

GO:0050936 "xanthophore differentiation" evidence=IMP

GO:0014032 "neural crest cell development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IDA

GO:0021529 "spinal cord oligodendrocyte cell differentiation" evidence=IMP

UNIPROTKB|E1BV70 LOC769405 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 702 (252.2 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 152/280 (54%), Positives = 185/280 (66%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   348 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 407

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ ++ESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   408 ENTIRWRMRRDEEGNEIRESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 467

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP++ R E I
Sbjct:   468 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRTEMI 527

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             AISL+AIKN+Y  
Sbjct:   528 KKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRYEEEDEGDDAISLAAIKNRYKG 587

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E +T++  K K++
Sbjct:   588 --------GIREERARIYSSDSDEGSDEDKTQRLLKAKKL 619

GO:0001711 "endodermal cell fate commitment" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q8WVC0 LEO1 "RNA polymerase-associated protein LEO1" [Homo sapiens (taxid:9606)]

 Score = 697 (250.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 151/280 (53%), Positives = 183/280 (65%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   357 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 416

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   417 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 476

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+  R E I
Sbjct:   477 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 536

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             +ISL+AIKN+Y  
Sbjct:   537 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKG 596

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E + ++  K K++
Sbjct:   597 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IDA

GO:0033523 "histone H2B ubiquitination" evidence=IDA

GO:0016593 "Cdc73/Paf1 complex" evidence=IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IDA

GO:0001711 "endodermal cell fate commitment" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=IMP

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1RZB7 LEO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 697 (250.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 151/280 (53%), Positives = 183/280 (65%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   357 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 416

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   417 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 476

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+  R E I
Sbjct:   477 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 536

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             +ISL+AIKN+Y  
Sbjct:   537 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKG 596

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E + ++  K K++
Sbjct:   597 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0001711 "endodermal cell fate commitment" evidence=IEA

UNIPROTKB|Q5R4D6 LEO1 "RNA polymerase-associated protein LEO1" [Pongo abelii (taxid:9601)]

 Score = 697 (250.4 bits), Expect = 6.7e-73, Sum P(2) = 6.7e-73
 Identities = 151/280 (53%), Positives = 183/280 (65%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   357 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDGEGRTRLKLKV 416

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   417 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 476

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+  R E I
Sbjct:   477 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 536

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             +ISL+AIKN+Y  
Sbjct:   537 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESISLAAIKNRYKG 596

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E + ++  K K++
Sbjct:   597 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 628

GO:0001711 "endodermal cell fate commitment" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0019827 "stem cell maintenance" evidence=ISS

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

MGI|MGI:2685031 Leo1 "Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 696 (250.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 150/280 (53%), Positives = 183/280 (65%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   358 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 417

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   418 ENTIRWRIRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 477

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+  R E I
Sbjct:   478 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 537

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             ++SL+AIKN+Y  
Sbjct:   538 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKG 597

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E + ++  K K++
Sbjct:   598 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 629

GO:0001711 "endodermal cell fate commitment" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=ISO

GO:0010390 "histone monoubiquitination" evidence=ISO

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=ISO

GO:0019827 "stem cell maintenance" evidence=ISO;IMP

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=ISO

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0033523 "histone H2B ubiquitination" evidence=ISO

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO

RGD|1549772 Leo1 "Leo1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 696 (250.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 150/280 (53%), Positives = 183/280 (65%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   369 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 428

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   429 ENTIRWRMRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 488

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+  R E I
Sbjct:   489 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 548

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             ++SL+AIKN+Y  
Sbjct:   549 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKG 608

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E + ++  K K++
Sbjct:   609 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 640

GO:0001711 "endodermal cell fate commitment" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA;ISO;ISS

GO:0010390 "histone monoubiquitination" evidence=IEA;ISO

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA;ISO;ISS

GO:0019827 "stem cell maintenance" evidence=IEA;ISO;ISS

GO:0031442 "positive regulation of mRNA 3'-end processing" evidence=IEA;ISO;ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA;ISO;ISS

GO:0033523 "histone H2B ubiquitination" evidence=IEA;ISO

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA;ISO;ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO;ISS

UNIPROTKB|Q641X2 Leo1 "RNA polymerase-associated protein LEO1" [Rattus norvegicus (taxid:10116)]

 Score = 696 (250.1 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
 Identities = 150/280 (53%), Positives = 183/280 (65%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   369 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 428

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ +KESNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   429 ENTIRWRMRRDEEGNEIKESNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 488

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP+  R E I
Sbjct:   489 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPECQRTEMI 548

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             ++SL+AIKN+Y  
Sbjct:   549 KKEEERLRASIRRESQQRRMREKQHQRGLSASYLEPDRYDEEEEGEESVSLAAIKNRYKG 608

Query:   417 KKNPAGASGAAPSR-NIYSSDEDASDLELRTKKHDKPKRV 455
                     G    R  IYSSD D    E + ++  K K++
Sbjct:   609 --------GIREERARIYSSDSDEGSEEDKAQRLLKAKKL 640

GO:0005730 "nucleolus" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

UNIPROTKB|Q52KV5 leo1 "RNA polymerase-associated protein LEO1" [Xenopus laevis (taxid:8355)]

 Score = 696 (250.1 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
 Identities = 147/272 (54%), Positives = 181/272 (66%)

Query:   181 RIDVEIPKISCDLGREMHFVKLPNFLSVETRPFXXXXXXXXXXXXXXXXXXGRARLKLKV 240
             RI+VEIPK++ DLG +++FVKLPNFLSVE RPF                  GR RLKLKV
Sbjct:   388 RIEVEIPKVNTDLGNDLYFVKLPNFLSVEPRPFDPQYYEDEFEDEEMLDEEGRTRLKLKV 447

Query:   241 ENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQG 300
             ENTIRWR   +++G+ V++SNAR+VKWSDGS+SLHLG+E+FDVYK PLQGDHNHL+IRQG
Sbjct:   448 ENTIRWRTRKDEEGNDVRDSNARIVKWSDGSMSLHLGNEVFDVYKAPLQGDHNHLFIRQG 507

Query:   301 TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANRYEKI 360
             TGLQGQAVF+TKL+FRPHST+S THRKMTLSLADR +KT  I+IL   G DP++ R E I
Sbjct:   508 TGLQGQAVFKTKLTFRPHSTDSATHRKMTLSLADRCSKTQKIRILPMAGRDPESQRSEMI 567

Query:   361 KKEEEKLRQSLXXXXXXXXXXXXGASSRLSAGYLX----XXXXXXXXAISLSAIKNKYNA 416
             KKEEE+LR S+                 LSA YL             +ISL+AIKN+Y  
Sbjct:   568 KKEEERLRASIRRESQQRRMREKQHQRGLSANYLEPDRYDDEEEGDESISLAAIKNRYKG 627

Query:   417 KKNPAGASGAAPSRNIYSSDEDASDLELRTKK 448
              +       ++ S     SDED +   L+ KK
Sbjct:   628 GREERARIYSSDSDE--GSDEDKAQRLLKAKK 657

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8WVC0	LEO1_HUMAN	No assigned EC number	0.6203	0.5841	0.4219	yes	N/A
Q94546	ATU_DROME	No assigned EC number	0.6092	0.6382	0.4234	yes	N/A
Q5XJE5	LEO1_MOUSE	No assigned EC number	0.6118	0.5987	0.4317	yes	N/A
Q6NYV9	LEO1_DANRE	No assigned EC number	0.6402	0.6008	0.4152	yes	N/A
Q5R4D6	LEO1_PONAB	No assigned EC number	0.6169	0.5841	0.4219	yes	N/A
Q641X2	LEO1_RAT	No assigned EC number	0.6118	0.5987	0.4247	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	481
pfam04004	312	pfam04004, Leo1, Leo1-like protein	5e-71
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001

>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein

 Score =  227 bits (581), Expect = 5e-71
 Identities = 111/297 (37%), Positives = 163/297 (54%), Gaps = 25/297 (8%)

Query: 130 EEGDGEGERRERDEDARSDASRRGSDR------EDDEDKENRTETGEDKEEEEPVETRID 183
           +         +R+  +  D   RG +        +D  + +  E   +   E+ V  +  
Sbjct: 1   DREQDSHRSNDRNSLSGDDDLSRGGNGDDGEINGEDPSQFSEIEEATETFPEKDVAVKFQ 60

Query: 184 VEIPKISCDL---GREMHFVKLPNFLSVETRPFDPETYEDEIEDEETL---DEEGRARLK 237
            E+P  +  L        F K+PNFLSVE +PFDPET+E E+  E+     +   R R+K
Sbjct: 61  TEVPTQNFGLPAGSNPSFFAKIPNFLSVEPKPFDPETFEAEMTKEDAKDEHEAHWRQRIK 120

Query: 238 LKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYI 297
           L+VENT+RWR+  +KDG   KESNA++V+WSDGS SLH+G+EIFD+  QPL  + NHL +
Sbjct: 121 LRVENTVRWRENKSKDGKTTKESNAQIVRWSDGSYSLHIGNEIFDIMHQPLSVNQNHLTV 180

Query: 298 RQ-GTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTGIKILGQVGYDPDANR 356
               T LQ Q V + KL+FRP ST SFTHRK+T +LA R  K+ G+KI   VG DP+  +
Sbjct: 181 SHEQTLLQPQGVIKKKLTFRPSSTNSFTHRKLTRNLATRQRKSGGVKIT-IVGKDPEHEK 239

Query: 357 YEKIKKEEEKLRQSLRKETKTKRTREK-----------GASSRLSAGYLEGDDDDDE 402
            E+ KKEE+KLR   R++ + K   +               ++ +  Y E +D+  +
Sbjct: 240 REREKKEEQKLRARRRRQNREKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSD 296

Members of this family are part of the Paf1/RNA polymerase II complex. The Paf1 complex probably functions during the elongation phase of transcription. The Leo1 subunit of the yeast Paf1-complex binds RNA and contributes to complex recruitment. The subunit acts by co-ordinating co-transcriptional chromain modifications and helping recruitment of mRNA 3prime-end processing factors. Length = 312

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 26/136 (19%), Positives = 56/136 (41%), Gaps = 16/136 (11%)

Query: 56  DHLGRIEVAAD-QLQGQTEVVQDLEAARVVQGEDLDHHLEALVALLLKLNAEALFGDASD 114
           +  G I+   D +++G       +E     +  + D H             +   G+  +
Sbjct: 778 EDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQ-E 836

Query: 115 ISTDDDDDGK--LQVVEEEGDGEGERRERDEDARSDASRRGSDREDDEDKENRTETGEDK 172
           ++ ++  + K   + V+  G  +G   E +E+            E++E++E   E  E++
Sbjct: 837 LNAENQGEAKQDEKGVDGGGGSDGGDSEEEEE------------EEEEEEEEEEEEEEEE 884

Query: 173 EEEEPVETRIDVEIPK 188
           EEEE  E  + +E P+
Sbjct: 885 EEEEENEEPLSLEWPE 900

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	481
KOG2428|consensus	443		100.0
PF04004	171	Leo1: Leo1-like protein; InterPro: IPR007149 Membe	100.0

>KOG2428|consensus

Probab=100.00  E-value=2.5e-75  Score=596.99  Aligned_cols=324  Identities=52%  Similarity=0.824  Sum_probs=275.8

Q ss_pred             HhhccchhhhcCCCCCCCCCCCcCcccccccccCCCccccccchhhhhhhhccCCCCCCccccccccCCCCCCCCCCCCC
Q psy7576          99 LLLKLNAEALFGDASDISTDDDDDGKLQVVEEEGDGEGERRERDEDARSDASRRGSDREDDEDKENRTETGEDKEEEEPV  178 (481)
Q Consensus        99 ~~~~~~~~~lfgd~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~e~~p  178 (481)
                      .+.++++.+||||.+|++++.+.+.......                             ......+++..+..++++++
T Consensus        75 ~k~s~~e~Dl~gd~dD~~~~~d~~~~~~e~~-----------------------------~~~~s~~~~~e~~~e~e~~~  125 (443)
T KOG2428|consen   75 EKKSPGEMDLFGDEDDLSDDSDGDGKPPESD-----------------------------GLVDSEAEEQEEAQEKEPPV  125 (443)
T ss_pred             cccCcccccccccccccccccccCCCCCCCC-----------------------------CcccccccchhhccccccCC
Confidence            3456777999999999996655543222100                             00111122333577889999


Q ss_pred             cceeeeecC-CcccCCCC-ceEEeecCCcccccCCCCCcCcCccccccccccchhhhhhhhcccceEEEEEeccCCCCCc
Q psy7576         179 ETRIDVEIP-KISCDLGR-EMHFVKLPNFLSVETRPFDPETYEDEIEDEETLDEEGRARLKLKVENTIRWRDTFNKDGDL  256 (481)
Q Consensus       179 ~t~idVeLP-ri~~~~~~-~l~~lKmPNFLsIep~PFDPeTye~e~~eee~lDeegr~r~kl~vENTIRWR~~~d~~G~~  256 (481)
                      +++++|++| +++++++. .+||+||||||+|+|+||||+||+++++++..+|+++|++++|+++||||||+.++.+|+.
T Consensus       126 e~v~evevp~~~n~~~~~~~~~fvkiPNFLsVep~PfDPetyede~~~~~~~Dee~r~r~klkveNTVRWR~~~d~~g~~  205 (443)
T KOG2428|consen  126 ETVLEVEVPIFVNPDLGKNPSFFVKIPNFLSVEPKPFDPETYEDEFEDEALLDEEGRQRLKLKVENTVRWRERRDKDGNK  205 (443)
T ss_pred             CcceEeecccccCCccCCCccceeecCcccccCCcCCChhhhhhhhhhhhhcccchhhhhhhhhcceeeEeeeecCCCCc
Confidence            999999999 78888765 5699999999999999999999999998888999999999999999999999999999999


Q ss_pred             eecccccEEEecCCceeeeeccceeeeecccCCCCCceEEEecCceeeccceecceEEeeeCCCChHHHHHHHHHHHhhc
Q psy7576         257 VKESNARLVKWSDGSLSLHLGSEIFDVYKQPLQGDHNHLYIRQGTGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRS  336 (481)
Q Consensus       257 vkESNARIVRWSDGSlSL~IGsE~FDI~~~pL~~d~nhLyvrq~~~LQgqav~~~kLtfrPtSt~S~THrkLT~sVA~R~  336 (481)
                      ++|||||||||||||||||||||+|||+.+||.++++|||++|+++||+|++|+++||||||||+|+||++||+.||.|.
T Consensus       206 ~kESNAriVrWSDGS~SL~lGNEvfDv~~~pl~~~~nhl~vrq~t~l~~Q~~ik~kltFrP~S~~S~tHrklt~~~a~r~  285 (443)
T KOG2428|consen  206 IKESNARIVRWSDGSMSLHLGNEVFDVYKQPLSGNQNHLFVRQGTGLQGQAVIKKKLTFRPHSTDSATHRKLTLNRADRS  285 (443)
T ss_pred             ceeccceEEEecCCceeEeechhHHHhhhcccccCcceeEEecccccchhheeeceeEeeccccchHHHHHHHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccceEEeeccCCCChHHHHHHHHHHHHHHHHHHHHHHHhh---hhcccCCC-----CCCCCCCCCCCCCCccccccHH
Q psy7576         337 NKTTGIKILGQVGYDPDANRYEKIKKEEEKLRQSLRKETKTK---RTREKGAS-----SRLSAGYLEGDDDDDEGAISLS  408 (481)
Q Consensus       337 ~Kt~kVKil~~v~~DPE~eKke~eK~EeEkLRa~~Rre~k~~---r~r~~g~~-----~~l~~~yledd~~dDe~~~sl~  408 (481)
                      +|+++|+|++.|+.|||.+|.+++|+|+++|||.+|++++.+   +.+..+..     ..-+..|.++++.+.++.++++
T Consensus       286 ~k~skvk~~~~vg~DPE~~k~~~~KkEee~LRa~~R~~~~~~~~~~~r~~~~~~e~~~~~~n~~~~~~~~~e~e~~~~~~  365 (443)
T KOG2428|consen  286 QKTSKVKILTIVGKDPEHEKREREKKEEERLRASRRREQRALMNPKQREKRYAEEDSDSAYNSPTTYDEEEEGEDEIRLA  365 (443)
T ss_pred             cccccceeeeeccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCccccccCCCCccccccccchhhhhh
Confidence            999999999999999999999999999999999999998877   33332222     1124556666777788899999


Q ss_pred             HHHhhhccCCCCCCCCCCCCCCCccCCCCC-ccchhhhccCCCCccccc
Q psy7576         409 AIKNKYNAKKNPAGASGAAPSRNIYSSDED-ASDLELRTKKHDKPKRVL  456 (481)
Q Consensus       409 aiK~~~k~~~~~~~~~~~~~~~~iYS~ded-~sD~~~r~~~~~~~~k~~  456 (481)
                      +||+.|+..     ++.....+-||++|+| ++|++.++.++..+.+.+
T Consensus       366 a~k~~~~~~-----~~~~~~~~d~~~~d~de~sd~e~e~~~~~~kee~~  409 (443)
T KOG2428|consen  366 ALKNRYKEA-----GQSEEETADIEESDEDESSDEEAEKEKREEKEEKL  409 (443)
T ss_pred             hhhhhhccc-----cccccccccccccccccccchhHHHHHHHHhhhcc
Confidence            999999873     3567789999999999 788888888876544444

>PF04004 Leo1: Leo1-like protein; InterPro: IPR007149 Members of this family are part of the Paf1/RNA polymerase II complex [, ]

Probab=100.00  E-value=1.2e-54  Score=400.20  Aligned_cols=165  Identities=56%  Similarity=0.903  Sum_probs=151.4

Q ss_pred             eEEeecCCcccccCCCCCcCcCcccc-ccccccchhhhhhhhcccceEEEEEeccCCCCCceecccccEEEecCCceeee
Q psy7576         197 MHFVKLPNFLSVETRPFDPETYEDEI-EDEETLDEEGRARLKLKVENTIRWRDTFNKDGDLVKESNARLVKWSDGSLSLH  275 (481)
Q Consensus       197 l~~lKmPNFLsIep~PFDPeTye~e~-~eee~lDeegr~r~kl~vENTIRWR~~~d~~G~~vkESNARIVRWSDGSlSL~  275 (481)
                      ||++||||||+|+|+||||+||+++. +++..+|++++.++++.++|||||||..+++|+.++||||||||||||||||+
T Consensus         1 l~~~k~Pnfl~iep~pFdp~t~~~~~~~~~~~~d~~~~~~~~~~~~ntIRWR~~~~~~g~~~~eSNAriVrWsDGS~sL~   80 (171)
T PF04004_consen    1 LYLLKMPNFLSIEPRPFDPETFEEDEEEEDELKDEEGRERLKLKVENTIRWRYSPDETGEKVKESNARIVRWSDGSLSLH   80 (171)
T ss_pred             CceecCCCcceeCCccCCchhcCCcccccccccchhhhhhhccccccEEEEeecCCCCCCEeeecccEEEEEcCCceEEE
Confidence            69999999999999999999998874 33466888899999999999999999999999999999999999999999999


Q ss_pred             eccceeee-ecccCCC-CCceEEEecC--ceeeccceecceEEeeeCCCChHHHHHHHHHHHhhcccccc-eEEeeccCC
Q psy7576         276 LGSEIFDV-YKQPLQG-DHNHLYIRQG--TGLQGQAVFRTKLSFRPHSTESFTHRKMTLSLADRSNKTTG-IKILGQVGY  350 (481)
Q Consensus       276 IGsE~FDI-~~~pL~~-d~nhLyvrq~--~~LQgqav~~~kLtfrPtSt~S~THrkLT~sVA~R~~Kt~k-VKil~~v~~  350 (481)
                      ||+|+||| ...|+.. +++|||++++  .+||++++|+++|+|||+|++|.||++|+++|+.|+.|+.+ +++++.++.
T Consensus        81 iG~E~fdi~~~~~~~~~~~~~L~~~~~~~~~l~~~~~i~~~l~~rP~s~~s~thr~l~~~~~~r~~k~~~~~~~~~~~~~  160 (171)
T PF04004_consen   81 IGNEVFDIQKKYPLVQDDHNYLFVRHGSSGVLQGQGHITKKLTFRPASTDSATHRRLTQAVASRSSKKQQKVKMLIVTTE  160 (171)
T ss_pred             eccEEEEeccccccccCCcceEEEEcCCcceEEEEEEecccEEEecCCccCHHHHHHHHHHHhhhcccccccccceeccC
Confidence            99999999 8888854 7899999998  78999999999999999999999999999999999977664 566666789


Q ss_pred             CChHHHHHHHH
Q psy7576         351 DPDANRYEKIK  361 (481)
Q Consensus       351 DPE~eKke~eK  361 (481)
                      |||++|+++||
T Consensus       161 DPE~~k~~~ek  171 (171)
T PF04004_consen  161 DPELEKKEAEK  171 (171)
T ss_pred             CHHHHHHHhcC
Confidence            99999999875

The Paf1 complex probably functions during the elongation phase of transcription [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00