Psyllid ID: psy759

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ
cccEEEEEEEEccccccccccccEEEEEEEcccccccccccHHcccccHHHHHHHHccccccccEEEEEEEccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccc
cccEEEEEEEEccccccccccccEEEEEEcccccccccHHHHHHccccHHHHHHHHcHHcccccEEEEEEEcccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccHHcccEccccEEcccccEEEccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcc
mlgceglayvntkynvfpddlpdIEFIFTAVSLAsdggvslrqemgitdhlynsvyssvdrkdswsiwpmilyprsrgkvllkdshpltpplihanffndtrdLDVIVEGIKMAIELSKTKAFQSIgstlhkapipgcsqytfgsdaywgcsvrHITTQLhhqcgtckmgprwdssavvdpqlkvygvdnlrvvdasiipvipggHTVAVVYMIAEKASDMIKKTWLPNQ
MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSsvdrkdswsiWPMILYPRSRGKVLLKDSHPLTpplihanffndtRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASiipvipggHTVAVVYMIAEKAsdmikktwlpnq
MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ
***CEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW****
MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWL***
MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ
MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPN*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
P18172625 Glucose dehydrogenase [ac no N/A 0.695 0.256 0.475 1e-39
P18173625 Glucose dehydrogenase [ac no N/A 0.708 0.260 0.460 3e-38
Q00593558 Alcohol dehydrogenase [ac N/A N/A 0.786 0.324 0.330 6e-21
Q47944531 L-sorbose 1-dehydrogenase yes N/A 0.769 0.333 0.313 1e-19
Q9VGP2581 Neither inactivation nor no N/A 0.652 0.258 0.351 2e-19
Q9WWW2552 Alcohol dehydrogenase [ac yes N/A 0.621 0.259 0.364 2e-19
P64264528 Uncharacterized GMC-type yes N/A 0.643 0.280 0.312 3e-18
P64263528 Uncharacterized GMC-type yes N/A 0.643 0.280 0.312 3e-18
A6U6Y8549 Choline dehydrogenase OS= no N/A 0.752 0.315 0.328 1e-17
P54223549 Choline dehydrogenase OS= no N/A 0.752 0.315 0.323 4e-17
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4 Back     alignment and function desciption
 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/160 (47%), Positives = 104/160 (65%)

Query: 67  IWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI 126
           I+P +L P+SRG + L+ + PL PP I AN+  D RD+  +VEGIK AI LS+T   +  
Sbjct: 449 IFPAVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQY 508

Query: 127 GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVY 186
           G  L K  + GC  + F SDAYW C+VR  T   +HQ G+CKMGP  D  AVV+ +L+V+
Sbjct: 509 GMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVH 568

Query: 187 GVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226
           GV  LRV+D SI+P +  G+T A   MIAEK + ++K+ W
Sbjct: 569 GVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608

Drosophila pseudoobscura pseudoobscura (taxid: 46245)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3 Back     alignment and function description
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ PE=1 SV=1 Back     alignment and function description
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1 Back     alignment and function description
>sp|Q9VGP2|NINAG_DROME Neither inactivation nor afterpotential protein G OS=Drosophila melanogaster GN=ninaG PE=2 SV=2 Back     alignment and function description
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3 SV=1 Back     alignment and function description
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3 SV=1 Back     alignment and function description
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316 OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1 Back     alignment and function description
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betA PE=3 SV=1 Back     alignment and function description
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
328705618 623 PREDICTED: glucose dehydrogenase [accept 0.978 0.361 0.574 7e-75
345482592 609 PREDICTED: glucose dehydrogenase [accept 0.965 0.364 0.566 5e-73
156551756 624 PREDICTED: glucose dehydrogenase [accept 0.965 0.355 0.535 1e-70
242018470 624 glucose dehydrogenase precursor, putativ 0.986 0.363 0.511 3e-68
193620141 623 PREDICTED: glucose dehydrogenase [accept 0.982 0.362 0.537 4e-68
332023086 601 Glucose dehydrogenase [Acromyrmex echina 0.965 0.369 0.508 1e-67
307185097 600 Glucose dehydrogenase [acceptor] [Campon 0.965 0.37 0.482 8e-66
242018476 630 glucose dehydrogenase precursor, putativ 0.986 0.360 0.497 1e-65
307172021 630 Glucose dehydrogenase [acceptor] [Campon 0.978 0.357 0.502 2e-65
322796406 598 hypothetical protein SINV_06973 [Solenop 0.965 0.371 0.504 6e-65
>gi|328705618|ref|XP_003242859.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  285 bits (730), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 131/228 (57%), Positives = 162/228 (71%), Gaps = 3/228 (1%)

Query: 5   EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSL---RQEMGITDHLYNSVYSSVDR 61
           EG+ YV TKYN    D+PDIE+IF + SLA +GG+     R+ MG+ D LY   Y+    
Sbjct: 391 EGVGYVKTKYNTDVGDIPDIEYIFLSTSLAGEGGLGASIGRRSMGVPDRLYYETYNGALA 450

Query: 62  KDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTK 121
           +D+WSIW M++YP SRG+V L+ ++P   P+I+ANFF D  DL  IVEGIKM IELSKTK
Sbjct: 451 RDTWSIWVMLMYPESRGQVRLRSANPFDKPVINANFFTDRMDLKRIVEGIKMTIELSKTK 510

Query: 122 AFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP 181
           AFQ  GS LHK P+ GC    FGSD YW C V  +T Q+HHQCGTCKMGP WD +AVV+ 
Sbjct: 511 AFQKYGSRLHKTPLLGCRHLEFGSDPYWECCVETMTMQMHHQCGTCKMGPEWDRNAVVNS 570

Query: 182 QLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPN 229
           +LKVYGV+ LRV+D SI+P I G HTVA  YMI EK +D++K TWL N
Sbjct: 571 ELKVYGVNRLRVIDCSIMPTITGAHTVAPTYMIGEKGADLVKSTWLNN 618

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom:

>gi|345482592|ref|XP_001607779.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|156551756|ref|XP_001602189.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242018470|ref|XP_002429698.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514701|gb|EEB16960.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|193620141|ref|XP_001952665.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Acyrthosiphon pisum] gi|328705616|ref|XP_003242858.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332023086|gb|EGI63351.1| Glucose dehydrogenase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307185097|gb|EFN71295.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus] Back     alignment and taxonomy information
>gi|242018476|ref|XP_002429701.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514704|gb|EEB16963.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307172021|gb|EFN63615.1| Glucose dehydrogenase [acceptor] [Camponotus floridanus] Back     alignment and taxonomy information
>gi|322796406|gb|EFZ18940.1| hypothetical protein SINV_06973 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
FB|FBgn0030590703 CG9518 [Drosophila melanogaste 0.986 0.322 0.484 1.7e-57
FB|FBgn0030598626 CG9503 [Drosophila melanogaste 0.986 0.362 0.493 5.9e-57
FB|FBgn0030591865 CG9517 [Drosophila melanogaste 0.973 0.258 0.482 2.7e-56
FB|FBgn0030592726 CG9514 [Drosophila melanogaste 0.982 0.311 0.429 9.2e-52
FB|FBgn0039415616 CG6142 [Drosophila melanogaste 0.973 0.363 0.419 8.3e-51
FB|FBgn0030588621 CG9521 [Drosophila melanogaste 0.956 0.354 0.424 3.8e-46
FB|FBgn0030586626 CG12539 [Drosophila melanogast 0.973 0.357 0.420 4.4e-45
FB|FBgn0030587616 CG9522 [Drosophila melanogaste 0.973 0.363 0.420 1e-43
FB|FBgn0030589622 CG9519 [Drosophila melanogaste 0.891 0.329 0.430 7.3e-43
FB|FBgn0030596633 CG12398 [Drosophila melanogast 0.965 0.350 0.387 3.3e-41
FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 110/227 (48%), Positives = 154/227 (67%)

Query:     3 GCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRK 62
             G EGLA+V+T Y+    D PDI+F     S+ SD G  +++ +G+ + +Y  VY  +  K
Sbjct:   394 GVEGLAFVHTPYSNRSLDWPDIQFHMAPASINSDNGARVKKVLGLKESVYQEVYHPIANK 453

Query:    63 DSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKA 122
             DSW+I P++L PRSRG V L+ ++P   PLI+AN+F+D  D   +VEG K+A+ +++ + 
Sbjct:   454 DSWTIMPLLLRPRSRGSVKLRSANPFHYPLINANYFDDPLDAKTLVEGAKIALRVAEAQV 513

Query:   123 FQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQ 182
             F+  GS L + P+P C Q+ F SDAY  C VR I+  ++H CGT KMGP WD  AVVDP+
Sbjct:   514 FKQFGSRLWRKPLPNCKQHKFLSDAYLECHVRTISMTIYHPCGTAKMGPAWDPEAVVDPR 573

Query:   183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPN 229
             L+VYGV  LRV+DASI+P I  G+T A V MIAEK +D+IK+ WL N
Sbjct:   574 LRVYGVRGLRVIDASIMPTISSGNTNAPVIMIAEKGADLIKEDWLTN 620
GO:0008812 "choline dehydrogenase activity" evidence=ISS
GO:0006066 "alcohol metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0046331 "lateral inhibition" evidence=IMP
FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030586 CG12539 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
pfam05199139 pfam05199, GMC_oxred_C, GMC oxidoreductase 1e-49
COG2303542 COG2303, BetA, Choline dehydrogenase and related f 2e-33
PRK02106560 PRK02106, PRK02106, choline dehydrogenase; Validat 3e-31
TIGR01810532 TIGR01810, betA, choline dehydrogenase 3e-26
TIGR03970487 TIGR03970, Rv0697, dehydrogenase, Rv0697 family 3e-21
PLN02785587 PLN02785, PLN02785, Protein HOTHEAD 3e-10
>gnl|CDD|218493 pfam05199, GMC_oxred_C, GMC oxidoreductase Back     alignment and domain information 
 Score =  158 bits (402), Expect = 1e-49
 Identities = 52/145 (35%), Positives = 71/145 (48%), Gaps = 6/145 (4%)

Query: 74  PRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKA 133
           PRSRG+V L  S PL  P+I  N+ +D  DL  +   +++A  +            L   
Sbjct: 1   PRSRGRVTLSSSDPLGLPVIDPNYLSDPADLAALRAALRLARRILAAA-----LVELTPG 55

Query: 134 PIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRV 193
           P+         SD      +R       H  GTC+MG       VVDP L+V+GVDNLRV
Sbjct: 56  PVEVVPGAAEASDDEILEYIRAAAVTSWHPMGTCRMGAD-PDDGVVDPDLRVHGVDNLRV 114

Query: 194 VDASIIPVIPGGHTVAVVYMIAEKA 218
           VDAS+ P  P G+    +Y +AE+A
Sbjct: 115 VDASVFPSSPSGNPTLTIYALAERA 139

This domain found associated with pfam00732. Length = 139
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase Back     alignment and domain information
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family Back     alignment and domain information
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
KOG1238|consensus623 100.0
TIGR01810532 betA choline dehydrogenase. This enzyme is a membe 100.0
PF05199144 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR0078 100.0
PRK02106560 choline dehydrogenase; Validated 100.0
PLN02785587 Protein HOTHEAD 100.0
COG2303542 BetA Choline dehydrogenase and related flavoprotei 100.0
TIGR02462544 pyranose_ox pyranose oxidase. Pyranose oxidase (al 99.88
COG1252405 Ndh NADH dehydrogenase, FAD-containing subunit [En 82.58
>KOG1238|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-59  Score=431.98  Aligned_cols=223  Identities=48%  Similarity=0.849  Sum_probs=206.6

Q ss_pred             eeEEEEEECCCCCCCCCCCCEEEEeeccccccCCcchhhhhccccccccccccccCCCCCeEEEEEeeeecCCCeEEEcc
Q psy759            4 CEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLK   83 (230)
Q Consensus         4 ~~~~~f~~s~~~~~~~~~pdiq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~   83 (230)
                      .++++|+++.++..+.+|||+|+++.+.....+.+..+....|   +++..++.+....+.|.++..+++|+|||+|+|+
T Consensus       397 ~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~  473 (623)
T KOG1238|consen  397 VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLR  473 (623)
T ss_pred             ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcc---hHHHHhhhhhhcCceeEEeehhcCCCccceEEec
Confidence            6899999999887778999999999988887776555555554   6776677777777789999999999999999999


Q ss_pred             CCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCCCCChhhhhhhhhccccccccc
Q psy759           84 DSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQ  163 (230)
Q Consensus        84 s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~  163 (230)
                      |+||.+.|+|+||||++|+|++.+++|++.+.++.++++|++++.+++..+.|+|+.....+|++|+||+|+.+.|.||+
T Consensus       474 s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~  553 (623)
T KOG1238|consen  474 STNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHY  553 (623)
T ss_pred             CCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeecc
Confidence            99999999999999999999999999999999999999999999999988999998877899999999999999999999


Q ss_pred             CcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhhhCCC
Q psy759          164 CGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPN  229 (230)
Q Consensus       164 ~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~~~~~  229 (230)
                      +|||+||+..|+++|||++||||||+|||||||||||.+|++|||||+||||||+||+||++|..+
T Consensus       554 ~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~  619 (623)
T KOG1238|consen  554 SGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLAN  619 (623)
T ss_pred             CCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999999643

>TIGR01810 betA choline dehydrogenase Back     alignment and domain information
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] Back     alignment and domain information
>PRK02106 choline dehydrogenase; Validated Back     alignment and domain information
>PLN02785 Protein HOTHEAD Back     alignment and domain information
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02462 pyranose_ox pyranose oxidase Back     alignment and domain information
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
3fim_B566 Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu 2e-18
3q9t_A577 Crystal Structure Analysis Of Formate Oxidase Lengt 2e-15
2jbv_A546 Crystal Structure Of Choline Oxidase Reveals Insigh 1e-14
3nne_A546 Crystal Structure Of Choline Oxidase S101a Mutant L 1e-14
3ljp_A546 Crystal Structure Of Choline Oxidase V464a Mutant L 2e-14
3t37_A526 Crystal Structure Of Pyridoxine 4-Oxidase From Meso 4e-11
1cf3_A583 Glucose Oxidase From Apergillus Niger Length = 583 4e-10
1gpe_A587 Glucose Oxidase From Penicillium Amagasakiense Leng 3e-08
3red_A521 3.0 A Structure Of The Prunus Mume Hydroxynitrile L 4e-06
1ju2_A536 Crystal Structure Of The Hydroxynitrile Lyase From 9e-06
3gdn_A521 Almond Hydroxynitrile Lyase In Complex With Benzald 9e-06
1naa_A541 Cellobiose Dehydrogenase Flavoprotein Fragment In C 4e-05
1kdg_A546 Crystal Structure Of The Flavin Domain Of Cellobios 4e-05
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566 Back     alignment and structure 
Iteration: 1

 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 5/203 (2%)
Query: 21  LPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
           LP    IF      + G  S   E   ++  ++      D     S+   ++ P +RG +
Sbjct: 366 LPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIPRPDTGSFMSVTNALISPVARGDI 425
Query: 81  LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQ 140
            L  S+P   PLI+  + +   D+  +++ +K  +     +A+      + +   P    
Sbjct: 426 KLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADF---VIRPFDPRLRD 482
Query: 141 YTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIP 200
            T   DA     +R     + H  GT  M PR  S  VVDP LKV GVD LR+VD SI+P
Sbjct: 483 PT--DDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILP 540
Query: 201 VIPGGHTVAVVYMIAEKASDMIK 223
             P  HT   +Y++ ++ +D+IK
Sbjct: 541 FAPNAHTQGPIYLVGKQGADLIK 563
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577 Back     alignment and structure
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546 Back     alignment and structure
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546 Back     alignment and structure
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546 Back     alignment and structure
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526 Back     alignment and structure
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583 Back     alignment and structure
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587 Back     alignment and structure
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521 Back     alignment and structure
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536 Back     alignment and structure
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521 Back     alignment and structure
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541 Back     alignment and structure
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 8e-73
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 2e-72
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 1e-67
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 4e-64
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 2e-57
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 5e-57
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 1e-54
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 2e-48
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 7e-16
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 6e-13
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 1e-12
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587 Back     alignment and structure
 Score =  230 bits (590), Expect = 8e-73
 Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 31/225 (13%)

Query: 3   GCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRK 62
           G   +  +  +Y  + + L D +  F  + + ++G ++                      
Sbjct: 389 GFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINF--------------------- 427

Query: 63  DSWSIWPMILYPRSRGKVLLKDSHPLT-PPLIHANFFNDTRDLDVIVEGIKMAIELSKTK 121
               +W +   P +RG V +  S P          FF +  DL       K+A +L+   
Sbjct: 428 ---DLWDL--IPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQG 482

Query: 122 AFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP 181
           A +          +PG +     + + W   V        H   +C M  R +   VVD 
Sbjct: 483 AMKEYF---AGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR-ELGGVVDA 538

Query: 182 QLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226
             KVYG   LRV+D SI P     H + + Y +A K +D I   +
Sbjct: 539 TAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 583
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566 Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583 Back     alignment and structure
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577 Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526 Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536 Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546 Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546 Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
3fim_B566 ARYL-alcohol oxidase; AAO, lignin degradation, oxi 100.0
3q9t_A577 Choline dehydrogenase and related flavoproteins; g 100.0
3qvp_A583 Glucose oxidase; oxidoreductase; HET: NAG BMA MAN 100.0
2jbv_A546 Choline oxidase; alcohol oxidation, flavoenyzme ox 100.0
3t37_A526 Probable dehydrogenase; BET alpha beta fold, ADP b 100.0
1gpe_A587 Protein (glucose oxidase); oxidoreductase(flavopro 100.0
1ju2_A536 HydroxynitrIle lyase; flavin, GMC oxidoreductase, 100.0
1kdg_A546 CDH, cellobiose dehydrogenase; GMC oxidoreductase, 100.0
1n4w_A504 CHOD, cholesterol oxidase; flavoenzyme, steroid me 99.98
1coy_A507 Cholesterol oxidase; oxidoreductase(oxygen recepto 99.97
3pl8_A623 Pyranose 2-oxidase; substrate complex, H167A mutan 99.95
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Back     alignment and structure
Probab=100.00  E-value=1.9e-48  Score=363.96  Aligned_cols=199  Identities=28%  Similarity=0.429  Sum_probs=168.5

Q ss_pred             ceeEEEEEECCCC----------CCCCCCCCEEEEeeccccccCCcchhhhhccccccccccccccCCCCCeEEEEEeee
Q psy759            3 GCEGLAYVNTKYN----------VFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMIL   72 (230)
Q Consensus         3 ~~~~~~f~~s~~~----------~~~~~~pdiq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   72 (230)
                      +.+.++|+++...          ......||+|+++.+.....                   ........+++++.++++
T Consensus       357 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~  417 (566)
T 3fim_B          357 IANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHP-------------------AIPRPDTGSFMSVTNALI  417 (566)
T ss_dssp             SCSEEEEECCCTTCGGGGTSCCCSSSTTSCSEEEEEESSCCCT-------------------TSCCCSSCCEEEEEEEES
T ss_pred             hhhheeeeccccchhhhhhhccccccCCCCCEEEEecccchhh-------------------cccCCCCCCEEEEEEeec
Confidence            4678899997531          01346799998876532211                   000112346889999999


Q ss_pred             ecCCCeEEEccCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCCCCChhhhhhh
Q psy759           73 YPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCS  152 (230)
Q Consensus        73 ~P~SrG~V~L~s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  152 (230)
                      +|+|||+|+|+|+||++.|+|++|||++|.|++.+++++|.+++|+++++++++...+.   .|++.  ...+|++|++|
T Consensus       418 ~P~SrG~V~L~s~dp~~~P~i~~~yl~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~P~~~--~~~sd~~~~~~  492 (566)
T 3fim_B          418 SPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSGQAWADFVIRPF---DPRLR--DPTDDAAIESY  492 (566)
T ss_dssp             SCSCCBEEECSSSCTTSCCEEECCTTCSHHHHHHHHHHHHHHHHHHTSGGGTTTEEEES---SGGGS--CTTCHHHHHHH
T ss_pred             CCccceEEEecCCCCCCCceeccccCCCccHHHHHHHHHHHHHHHHhCcccCCcccccc---CCCcc--cccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998876554   45421  35789999999


Q ss_pred             hhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy759          153 VRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKT  225 (230)
Q Consensus       153 i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~  225 (230)
                      +|+...+.||++||||||++++.++|||++||||||+|||||||||||+++++||++|+||||||+||+|+++
T Consensus       493 ir~~~~t~~H~~GTc~Mg~~~~~~~VVD~~lrV~Gv~~LrVvDaSv~P~~~~~n~~~~~~~iaekaAd~I~~~  565 (566)
T 3fim_B          493 IRDNANTIFHPVGTASMSPRGASWGVVDPDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIKAD  565 (566)
T ss_dssp             HHHHCEECSCCBCTTCBCCTTCSSCSBCTTCBBTTCBSEEECSGGGCCSCCSSCTHHHHHHHHHHHHHHHHHT
T ss_pred             HhhcccccccccCccccCCcccCCccCCCCCeEccCCCcEEcccccCCCCCCcCcHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998766559999999999999999999999999999999999999999999999986
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Back     alignment and structure
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Back     alignment and structure
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Back     alignment and structure
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Back     alignment and structure
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Back     alignment and structure
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Back     alignment and structure
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Back     alignment and structure
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Back     alignment and structure
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Back     alignment and structure
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 230
d1cf3a1385 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper 4e-21
d1cf3a2196 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus 3e-19
d1gpea2196 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium 5e-18
d1kdga1360 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain 8e-18
d2f5va1379 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W 2e-15
d1gpea1391 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic 2e-15
d1ju2a2170 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond 1e-13
d1kdga2181 d.16.1.1 (A:513-693) Flavoprotein domain of flavoc 2e-08
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score = 88.4 bits (218), Expect = 4e-21
 Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 156 ITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIA 215
           I T +    G C M P+ +   VVD   +VYGV  LRV+D SI P     H + V Y +A
Sbjct: 312 IDTVVDLPVGLCSMMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 370

Query: 216 EKASDMIKKTWLPNQ 230
            K SD I + +   Q
Sbjct: 371 LKISDAILEDYASMQ 385
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 196 Back     information, alignment and structure
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 196 Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 Back     information, alignment and structure
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 170 Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 181 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d1ju2a2170 Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI 99.92
d1gpea2196 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.9
d1cf3a2196 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.89
d1kdga2181 Flavoprotein domain of flavocytochrome cellobiose 99.85
d2f5va1379 Pyranose 2-oxidase {White-rot fungus (Peniophora s 99.72
d1cf3a1385 Glucose oxidase {Aspergillus niger [TaxId: 5061]} 99.67
d1kdga1360 Flavoprotein domain of flavocytochrome cellobiose 99.4
d1gpea1391 Glucose oxidase {Penicillium amagasakiense [TaxId: 99.28
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 97.32
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 96.91
d2f5va2198 Pyranose 2-oxidase {White-rot fungus (Peniophora s 92.36
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.92  E-value=1.4e-25  Score=177.11  Aligned_cols=142  Identities=20%  Similarity=0.178  Sum_probs=111.5

Q ss_pred             CceeEEEEEECCCCCCCCCCCCEEEEeeccccccCCcchhhhhccccccccccccccCCCCCeEEEEEeeeecCCCeEEE
Q psy759            2 LGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVL   81 (230)
Q Consensus         2 ~~~~~~~f~~s~~~~~~~~~pdiq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~   81 (230)
                      +..++++|.+++.   ....||+|+++.+.......                  ..++.+...+++...+++|+|||+|+
T Consensus        21 s~~q~~G~~~~~~---~~~~p~lq~~~~p~~~~~~~------------------~~p~~~~~~~~i~~~l~~P~SrG~v~   79 (170)
T d1ju2a2          21 TIVTVLGISNDFY---QCSFSSLPFTTPPFGFFPSS------------------SYPLPNSTFAHFASKVAGPLSYGSLT   79 (170)
T ss_dssp             CCCCEEEECSSEE---EEEEEECCCSSCCBTTBSSS------------------CCCCCSSCEEEEEEEESSCSCCEEEE
T ss_pred             chhhEEEEecCch---hhcCCCcccccCcccccccC------------------CCCCCCCCeeEeecccCCccccceEE
Confidence            4567788887653   34678888877665432111                  12344556778999999999999999


Q ss_pred             cc-CCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCC-------CCCCCCCCCCChhhhhhhh
Q psy759           82 LK-DSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP-------IPGCSQYTFGSDAYWGCSV  153 (230)
Q Consensus        82 L~-s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~-------~p~~~~~~~~~~~~~~~~i  153 (230)
                      |+ |+||.+.|+|++|||+++.|++.+++|+|.+++|+++++|+++...++.+.       .|+..  ...+|++|++|+
T Consensus        80 L~~S~dp~~~P~i~~nyl~~~~D~~~~v~~~~~~r~i~~~~~~~~~~~~e~~p~~~~~~~~~p~p~--~~~dde~l~~~i  157 (170)
T d1ju2a2          80 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPK--DQTDDAAFETFC  157 (170)
T ss_dssp             CSCSSCTTSCCEECCCTTCSHHHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCS--CTTCHHHHHHHH
T ss_pred             ecCCCCcccCcccCcccccCchhHHHHHHHHHHHHHHHcChhhhhccccccccccccccccCCCcc--CCCCHHHHHHHH
Confidence            97 899999999999999999999999999999999999999999887654211       23222  245789999999


Q ss_pred             hcccccccccCcc
Q psy759          154 RHITTQLHHQCGT  166 (230)
Q Consensus       154 ~~~~~~~~H~~GT  166 (230)
                      |+.+.|.||.+|.
T Consensus       158 R~~~~T~yHyhgg  170 (170)
T d1ju2a2         158 RESVASYWHYHGG  170 (170)
T ss_dssp             HHHCEECSCCEES
T ss_pred             HhcCEeccCCCCc
Confidence            9999999999984
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Back     information, alignment and structure
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Back     information, alignment and structure