Psyllid ID: psy7602

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-----
Protein Sequence
MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILNG
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEcccHHHHHHHHHHHHHccccccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHccccEEEEcccccccEEEcHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccEcccc
Coil and Loop (DISEMBL)
mpstlmtglecshrfctQCWCEYLTTKIIQEGMGQTIACAAhgcnilvddgkpiefdVYQGILsnqvtncrlaslvpckcswvrfppgadfilng
Flexible Loop (DISEMBL)
mpstlmtglecshRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPgadfilng
Low Complexity Region (SEG)
MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILNG
Disordered region (IsUnstruct)
*****MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFIL**
Disordered Region (DISOPRED)
*P*TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILNG
Disordered Region (DISEMBL)
********LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILNG
Disordered Region (DISPRO)
****LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	95	2.2.26 [Sep-21-2011]
B1H1E4	529	E3 ubiquitin-protein liga	yes	N/A	0.8	0.143	0.523	2e-18
Q32NS4	529	E3 ubiquitin-protein liga	N/A	N/A	0.8	0.143	0.523	2e-18
Q9Z1K5	555	E3 ubiquitin-protein liga	yes	N/A	0.8	0.136	0.511	3e-18
A2VEA3	555	E3 ubiquitin-protein liga	yes	N/A	0.8	0.136	0.511	3e-18
Q9Y4X5	557	E3 ubiquitin-protein liga	yes	N/A	0.8	0.136	0.511	3e-18
Q6NW85	533	E3 ubiquitin-protein liga	yes	N/A	0.8	0.142	0.5	4e-17
Q6PFJ9	527	E3 ubiquitin-protein liga	no	N/A	0.8	0.144	0.5	1e-16
Q94981	503	Protein ariadne-1 OS=Dros	yes	N/A	0.526	0.099	0.7	3e-16
Q9LVX0	537	Probable E3 ubiquitin-pro	yes	N/A	0.515	0.091	0.46	2e-07
Q9LVW9	529	Putative E3 ubiquitin-pro	no	N/A	0.505	0.090	0.448	2e-07

>sp|B1H1E4|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW EYLTTKII+EGMGQTI+C AHGC+ILVDD   +       
Sbjct: 166 PNSYFTGLECGHKFCMQCWSEYLTTKIIEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 225

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 226 VKLKYQHLITNSFVECNRLLKWCP 249

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.
Xenopus tropicalis (taxid: 8364)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q32NS4|ARI1_XENLA E3 ubiquitin-protein ligase arih1 OS=Xenopus laevis GN=arih1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW EYLTTKII+EGMGQTI+C AHGC+ILVDD   +       
Sbjct: 166 PNSYFTGLECGHKFCMQCWGEYLTTKIIEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 225

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 226 VKLKYQHLITNSFVECNRLLKWCP 249

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Z1K5|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2 SV=3

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct: 192 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 251

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 252 VKLKYQHLITNSFVECNRLLKWCP 275

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. May play a role in protein translation by mediating polyubiquitination of EIF4E2, leading to its subsequent degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2VEA3|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct: 192 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 251

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 252 VKLKYQHLITNSFVECNRLLKWCP 275

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. May play a role in protein translation by mediating polyubiquitination of EIF4E2, leading to its subsequent degradation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 54/84 (64%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct: 194 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 253

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 254 VKLKYQHLITNSFVECNRLLKWCP 277

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. May play a role in protein translation by mediating polyubiquitination of EIF4E2, leading to its subsequent degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW +YLTTKII+EGMGQTI+C AH C+ILVDD   +       
Sbjct: 170 PNSYFTGLECGHKFCMQCWGDYLTTKIIEEGMGQTISCPAHNCDILVDDNTVMRLITDSK 229

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 230 VKLKYQHLITNSFVECNRLLKWCP 253

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6PFJ9|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 8/84 (9%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
           P++  TGLEC H+FC QCW +YLTTKII+EGMGQTI+C AH C+ILVDD   +       
Sbjct: 164 PNSYFTGLECGHKFCMQCWGDYLTTKIIEEGMGQTISCPAHSCDILVDDNTVMRLITDSK 223

Query: 59  ----YQGILSNQVTNC-RLASLVP 77
               YQ +++N    C RL    P
Sbjct: 224 VKLKYQHLITNSFVECNRLLKWCP 247

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94981|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/50 (70%), Positives = 41/50 (82%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50
           +P   M GLEC HRFC  CW EYL+TKI+ EG+GQTI+CAAHGC+ILVDD
Sbjct: 140 LPPDSMAGLECGHRFCMPCWHEYLSTKIVAEGLGQTISCAAHGCDILVDD 189

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBCD10/UBE2L3, and then transfers it to substrates.

Drosophila melanogaster (taxid: 7227)

>sp|Q9LVX0|ARI3_ARATH Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50
           +PS +MT +EC HRFC  CW  + T K I EG  + I C AH C  + D+
Sbjct: 129 LPSNVMTRMECGHRFCNDCWIGHFTVK-INEGESKRILCMAHECKAICDE 177

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LVW9|ARI4_ARATH Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)

Query: 6   MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54
           MT +EC HRFC  CW E+ T + I EG G+ I C A+ CN + D+ + +
Sbjct: 132 MTRMECGHRFCNDCWKEHFTVR-INEGEGKRIRCMAYKCNTICDEARQL 179

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
242016336	506	protein ariadne-1, putative [Pediculus h	0.810	0.152	0.564	1e-19
91076172	515	PREDICTED: similar to ariadne ubiquitin-	0.810	0.149	0.541	1e-18
270014562	501	hypothetical protein TcasGA2_TC004596 [T	0.810	0.153	0.541	2e-18
328711886	507	PREDICTED: protein ariadne-1 homolog [Ac	0.810	0.151	0.564	2e-18
170038021	498	ariadne ubiquitin-conjugating enzyme E2	0.515	0.098	0.795	5e-18
322797457	493	hypothetical protein SINV_05140 [Solenop	0.810	0.156	0.541	6e-18
332029156	495	Protein ariadne-1-like protein [Acromyrm	0.810	0.155	0.541	9e-18
307214633	510	Protein ariadne-1 [Harpegnathos saltator	0.810	0.150	0.541	9e-18
357623277	519	putative ariadne ubiquitin-conjugating e	0.757	0.138	0.6	1e-17
241053358	506	E3 ubiquitin ligase, putative [Ixodes sc	0.810	0.152	0.529	1e-17

>gi|242016336|ref|XP_002428785.1| protein ariadne-1, putative [Pediculus humanus corporis] gi|212513470|gb|EEB16047.1| protein ariadne-1, putative [Pediculus humanus corporis]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/85 (56%), Positives = 59/85 (69%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFD--- 57
           +PS++MTGLEC HRFCTQCW EYLTTKI++EG+GQTIACAAHGC+ILVDD   +      
Sbjct: 143 LPSSMMTGLECGHRFCTQCWAEYLTTKIMEEGVGQTIACAAHGCDILVDDATVMRLVRDS 202

Query: 58  ----VYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 203 KVKLKYQHLITNSFVECNRLLRWCP 227

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076172|ref|XP_971560.1| PREDICTED: similar to ariadne ubiquitin-conjugating enzyme E2 binding protein [Tribolium castaneum]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFD--- 57
           +PS+ MTGLEC H+FCT CWCEYLTTKI++EG+GQTIACAA+GC+ILVDD   ++     
Sbjct: 152 LPSSHMTGLECEHKFCTHCWCEYLTTKIMEEGVGQTIACAAYGCDILVDDATVMKLVKDS 211

Query: 58  ----VYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 212 KVKLKYQHLITNSFVECNRLLRWCP 236

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014562|gb|EFA11010.1| hypothetical protein TcasGA2_TC004596 [Tribolium castaneum]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFD--- 57
           +PS+ MTGLEC H+FCT CWCEYLTTKI++EG+GQTIACAA+GC+ILVDD   ++     
Sbjct: 138 LPSSHMTGLECEHKFCTHCWCEYLTTKIMEEGVGQTIACAAYGCDILVDDATVMKLVKDS 197

Query: 58  ----VYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 198 KVKLKYQHLITNSFVECNRLLRWCP 222

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711886|ref|XP_001947883.2| PREDICTED: protein ariadne-1 homolog [Acyrthosiphon pisum]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/85 (56%), Positives = 58/85 (68%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK-------P 53
           +P+ +MTGLEC+HRFCTQCW EYLTTKII+EG+GQTIACAA GC+ILVDD         P
Sbjct: 142 LPNNMMTGLECNHRFCTQCWTEYLTTKIIEEGVGQTIACAASGCDILVDDATVMRLVRDP 201

Query: 54  IEFDVYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 202 KVRMKYQHLITNSFVECNRLLRWCP 226

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038021|ref|XP_001846852.1| ariadne ubiquitin-conjugating enzyme E2 binding protein [Culex quinquefasciatus] gi|167881438|gb|EDS44821.1| ariadne ubiquitin-conjugating enzyme E2 binding protein [Culex quinquefasciatus]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 46/49 (93%)

Query: 2   PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50
           P ++MTGLEC HRFCTQCW EYLTTKI++EG+GQ+IACAAHGC+ILVDD
Sbjct: 136 PPSMMTGLECGHRFCTQCWQEYLTTKIVEEGLGQSIACAAHGCDILVDD 184

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797457|gb|EFZ19528.1| hypothetical protein SINV_05140 [Solenopsis invicta]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFD--- 57
           +PS++MTGLEC HRFCT CW EYLTTKI++EG+GQTIACAAH C+ILVDD   +      
Sbjct: 146 LPSSMMTGLECGHRFCTGCWGEYLTTKIMEEGVGQTIACAAHACDILVDDASVMRLVKDS 205

Query: 58  ----VYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 206 KVKLKYQHLITNSFVECNRLLRWCP 230

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029156|gb|EGI69167.1| Protein ariadne-1-like protein [Acromyrmex echinatior]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFD--- 57
           +PS++MTGLEC HRFCT CW EYLTTKI++EG+GQTIACAAH C+ILVDD   +      
Sbjct: 146 LPSSMMTGLECGHRFCTGCWGEYLTTKIMEEGVGQTIACAAHACDILVDDASVMRLVKDS 205

Query: 58  ----VYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 206 KVKLKYQHLITNSFVECNRLLRWCP 230

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214633|gb|EFN89583.1| Protein ariadne-1 [Harpegnathos saltator]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/85 (54%), Positives = 57/85 (67%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFD--- 57
           +PS++MTGLEC HRFCT CW EYLTTKI++EG+GQTIACAAH C+ILVDD   +      
Sbjct: 147 LPSSMMTGLECGHRFCTGCWGEYLTTKIMEEGVGQTIACAAHACDILVDDASVMRLVKDS 206

Query: 58  ----VYQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 207 KVKLKYQHLITNSFVECNRLLRWCP 231

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623277|gb|EHJ74502.1| putative ariadne ubiquitin-conjugating enzyme E2 binding protein [Danaus plexippus]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 54/80 (67%), Gaps = 8/80 (10%)

Query: 6  MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG-------KPIEFDV 58
          MTGLEC HRFCTQCWCEYLTTKI++EG+GQTIACAAH C+ILVDD         P     
Sbjct: 1  MTGLECGHRFCTQCWCEYLTTKIMEEGLGQTIACAAHACDILVDDATVMRLVRDPRVKLK 60

Query: 59 YQGILSNQVTNC-RLASLVP 77
          YQ I++N    C RL    P
Sbjct: 61 YQHIITNSFVECNRLLRWCP 80

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241053358|ref|XP_002407580.1| E3 ubiquitin ligase, putative [Ixodes scapularis] gi|215492235|gb|EEC01876.1| E3 ubiquitin ligase, putative [Ixodes scapularis]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 8/85 (9%)

Query: 1   MPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV-- 58
           +PS++MTGL C HRFCT+CW  YLTTKI++EGMGQTI+CAAHGC+ILVDD   ++     
Sbjct: 143 LPSSMMTGLACDHRFCTECWNYYLTTKIMEEGMGQTISCAAHGCDILVDDQTVMKLIADP 202

Query: 59  -----YQGILSNQVTNC-RLASLVP 77
                YQ +++N    C RL    P
Sbjct: 203 KVKLKYQHLITNSFVECNRLLRWCP 227

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	95
UNIPROTKB|F1SI92	343	ARIH1 "Uncharacterized protein	0.747	0.206	0.531	8.9e-20
UNIPROTKB|Q32NS4	529	arih1 "E3 ubiquitin-protein li	0.8	0.143	0.523	1.1e-19
UNIPROTKB|F1NF42	445	ARIH1 "Uncharacterized protein	0.8	0.170	0.511	1.1e-19
UNIPROTKB|B1H1E4	529	arih1 "E3 ubiquitin-protein li	0.8	0.143	0.523	1.3e-19
UNIPROTKB|J9NWH8	523	ARIH1 "Uncharacterized protein	0.8	0.145	0.511	2.6e-19
UNIPROTKB|F1PG97	554	ARIH1 "Uncharacterized protein	0.8	0.137	0.511	3.4e-19
UNIPROTKB|A2VEA3	555	ARIH1 "E3 ubiquitin-protein li	0.8	0.136	0.511	3.4e-19
MGI|MGI:1344363	555	Arih1 "ariadne ubiquitin-conju	0.8	0.136	0.511	3.4e-19
UNIPROTKB|Q9Y4X5	557	ARIH1 "E3 ubiquitin-protein li	0.8	0.136	0.511	3.5e-19
ZFIN|ZDB-GENE-030131-5213	527	arih1 "ariadne ubiquitin-conju	0.8	0.144	0.5	9.9e-19

UNIPROTKB|F1SI92 ARIH1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 218 (81.8 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
 Identities = 42/79 (53%), Positives = 51/79 (64%)

Query:     7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV-------Y 59
             TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +           Y
Sbjct:    23 TGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKY 82

Query:    60 QGILSNQVTNC-RLASLVP 77
             Q +++N    C RL    P
Sbjct:    83 QHLITNSFVECNRLLKWCP 101

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q32NS4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus laevis (taxid:8355)]

 Score = 227 (85.0 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 44/84 (52%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKII+EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   166 PNSYFTGLECGHKFCMQCWGEYLTTKIIEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 225

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   226 VKLKYQHLITNSFVECNRLLKWCP 249

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

UNIPROTKB|F1NF42 ARIH1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct:    82 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 141

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   142 VKLKYQHLITNSFVECNRLLKWCP 165

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

UNIPROTKB|B1H1E4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 229 (85.7 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 44/84 (52%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKII+EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   166 PNSYFTGLECGHKFCMQCWSEYLTTKIIEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 225

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   226 VKLKYQHLITNSFVECNRLLKWCP 249

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

UNIPROTKB|J9NWH8 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   160 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 219

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   220 VKLKYQHLITNSFVECNRLLKWCP 243

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PG97 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 226 (84.6 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   191 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 250

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   251 VKLKYQHLITNSFVECNRLLKWCP 274

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|A2VEA3 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Bos taurus (taxid:9913)]

 Score = 226 (84.6 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   192 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 251

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   252 VKLKYQHLITNSFVECNRLLKWCP 275

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1344363 Arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   192 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 251

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   252 VKLKYQHLITNSFVECNRLLKWCP 275

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IPI

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9Y4X5 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 3.5e-19, Sum P(2) = 3.5e-19
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW EYLTTKI++EGMGQTI+C AHGC+ILVDD   +       
Sbjct:   194 PNSYFTGLECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSK 253

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   254 VKLKYQHLITNSFVECNRLLKWCP 277

GO:0019787 "small conjugating protein ligase activity" evidence=TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

ZFIN|ZDB-GENE-030131-5213 arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 218 (81.8 bits), Expect = 9.9e-19, Sum P(2) = 9.9e-19
 Identities = 42/84 (50%), Positives = 53/84 (63%)

Query:     2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDV--- 58
             P++  TGLEC H+FC QCW +YLTTKII+EGMGQTI+C AH C+ILVDD   +       
Sbjct:   164 PNSYFTGLECGHKFCMQCWGDYLTTKIIEEGMGQTISCPAHSCDILVDDNTVMRLITDSK 223

Query:    59 ----YQGILSNQVTNC-RLASLVP 77
                 YQ +++N    C RL    P
Sbjct:   224 VKLKYQHLITNSFVECNRLLKWCP 247

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y4X5	ARI1_HUMAN	6, ., 3, ., 2, ., -	0.5119	0.8	0.1364	yes	N/A
Q9Z1K5	ARI1_MOUSE	6, ., 3, ., 2, ., -	0.5119	0.8	0.1369	yes	N/A
A2VEA3	ARI1_BOVIN	6, ., 3, ., 2, ., -	0.5119	0.8	0.1369	yes	N/A
B1H1E4	ARI1_XENTR	6, ., 3, ., 2, ., -	0.5238	0.8	0.1436	yes	N/A
Q94981	ARI1_DROME	No assigned EC number	0.7	0.5263	0.0994	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	95
KOG1814|consensus	445		99.64
KOG1815|consensus	444		99.62
KOG1812|consensus	384		99.25
smart00647	64	IBR In Between Ring fingers. the domains occurs be	98.34
PF01485	64	IBR: IBR domain; InterPro: IPR002867 Zinc finger (	98.06
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	97.94
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.85
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.76
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.57
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.42
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.41
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.22
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.03
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	96.96
KOG0320|consensus	187		96.77
PF14634	44	zf-RING_5: zinc-RING finger domain	96.76
KOG0006|consensus	446		96.69
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.53
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	96.45
KOG0317|consensus	293		96.38
KOG1002|consensus	791		96.29
KOG2164|consensus	513		95.95
KOG0978|consensus	698		95.88
PHA02926	242	zinc finger-like protein; Provisional	95.37
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	95.12
KOG0823|consensus	230		95.12
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	95.09
PHA02929	238	N1R/p28-like protein; Provisional	94.18
KOG2177|consensus	386		93.02
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	90.94
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	89.99
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	89.89
KOG0287|consensus	442		87.85
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	85.82
KOG4739|consensus	233		83.53
KOG2660|consensus	331		82.64
PF06844	68	DUF1244: Protein of unknown function (DUF1244); In	81.19
KOG0824|consensus	324		80.38

>KOG1814|consensus

Probab=99.64  E-value=3e-16  Score=120.13  Aligned_cols=80  Identities=26%  Similarity=0.458  Sum_probs=74.2

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH------HHHHHHHHHHHHhhCCCCCCC
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF------DVYQGILSNQVTNCRLASLVP   77 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l------~ky~~~l~~~~v~~~~~~~~~   77 (95)
                      ..++.++|+|+||+.|++.|.++.|+ +|++..++||+++|+...++.+++++      +||+++++++-++...     
T Consensus       198 ~c~~~lpC~Hv~Ck~C~kdY~~~~i~-eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~arYe~l~lqk~l~~ms-----  271 (445)
T KOG1814|consen  198 HCFKFLPCSHVFCKSCLKDYFTIQIQ-EGQVSCLKCPDPKCGSVAPPGQVKELVGDELFARYEKLMLQKTLELMS-----  271 (445)
T ss_pred             ceeeecccchHHHHHHHHHHHHHhhh-cceeeeecCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Confidence            34667899999999999999999998 79988999999999999999999988      9999999999999984     


Q ss_pred             CCCCCeeeCCCCCCcc
Q psy7602          78 CKCSWVRFPPGADFIL   93 (95)
Q Consensus        78 ~~~~~~~~CP~~~C~~   93 (95)
                          ++.|||++.|+.
T Consensus       272 ----dv~yCPr~~Cq~  283 (445)
T KOG1814|consen  272 ----DVVYCPRACCQL  283 (445)
T ss_pred             ----ccccCChhhccC
Confidence                999999999986

>KOG1815|consensus

Probab=99.62  E-value=3.4e-16  Score=121.44  Aligned_cols=80  Identities=34%  Similarity=0.667  Sum_probs=71.2

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH-------HHHHHHHHHHHHhhCCCCCCC
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF-------DVYQGILSNQVTNCRLASLVP   77 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l-------~ky~~~l~~~~v~~~~~~~~~   77 (95)
                      ++..+.|||.||..||..||..+|. +|....|+||..+|...+..++|..+       ++|++++.++||+++.     
T Consensus        83 ~~~~~~c~H~~c~~cw~~yl~~kI~-~~~~~~i~cp~~~C~a~v~~~~i~~~~s~~~~~~ky~~~i~~syve~~~-----  156 (444)
T KOG1815|consen   83 EIIGLGCGHPFCPPCWTGYLGTKIH-EGEEAKIKCPAHGCPALVGEDTVEKLVSDKEDKEKYQRYILRSYVEDNV-----  156 (444)
T ss_pred             hhhhcCCCcHHHHHHHHHHhhheee-ccccccccCCCCCccccCCCceeeeecCCHHHHHHHHHHHHHHHHhcCC-----
Confidence            5777899999999999999999998 55533599999999999998888665       8999999999999996     


Q ss_pred             CCCCCeeeCCCCCCccC
Q psy7602          78 CKCSWVRFPPGADFILN   94 (95)
Q Consensus        78 ~~~~~~~~CP~~~C~~~   94 (95)
                          .++|||+|+|++.
T Consensus       157 ----~lkwCP~~~C~~a  169 (444)
T KOG1815|consen  157 ----PLKWCPAPGCGLA  169 (444)
T ss_pred             ----ccccCCCCCCCce
Confidence                6999999999873

>KOG1812|consensus

Probab=99.25  E-value=8.3e-12  Score=95.81  Aligned_cols=72  Identities=24%  Similarity=0.499  Sum_probs=63.1

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH------HHHHHHHHHHHHhhCCCCCCCCCCCC
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF------DVYQGILSNQVTNCRLASLVPCKCSW   82 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l------~ky~~~l~~~~v~~~~~~~~~~~~~~   82 (95)
                      +.|+|.||.+||++|++.+.. +|  ..|+||+.+|+..++.+....+      +.|+..+.+.+|....         .
T Consensus       166 ~~C~H~fC~~C~k~~iev~~~-~~--~~~~C~~~~C~~~l~~~~c~~llt~kl~e~~e~~~~e~~i~~~~---------~  233 (384)
T KOG1812|consen  166 LKCGHRFCKDCVKQHIEVKLL-SG--TVIRCPHDGCESRLTLESCRKLLTPKLREMWEQRLKEEVIPSLD---------R  233 (384)
T ss_pred             hcccchhhhHHhHHHhhhhhc-cC--CCccCCCCCCCccCCHHHHhhhcCHHHHHHHHHHHHHHhhhhhh---------c
Confidence            689999999999999999954 44  3799999999999999988777      8888999999998884         5


Q ss_pred             eeeCCCCCCcc
Q psy7602          83 VRFPPGADFIL   93 (95)
Q Consensus        83 ~~~CP~~~C~~   93 (95)
                      + |||+|+|..
T Consensus       234 ~-ycp~~~C~~  243 (384)
T KOG1812|consen  234 V-YCPYPRCSS  243 (384)
T ss_pred             c-cCCCCCchH
Confidence            6 999999964

>smart00647 IBR In Between Ring fingers

Probab=98.34  E-value=3.5e-07  Score=52.76  Aligned_cols=29  Identities=14%  Similarity=0.255  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCccC
Q psy7602          57 DVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILN   94 (95)
Q Consensus        57 ~ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~~   94 (95)
                      ++|++++++++|+.++         +++|||+|+|+.+
T Consensus         1 ~~y~~~~~~~~i~~~~---------~~~~CP~~~C~~~   29 (64)
T smart00647        1 EKYERLLLESYVESNP---------DLKWCPAPDCSAA   29 (64)
T ss_pred             ChHHHHHHHHHHhcCC---------CccCCCCCCCcce
Confidence            4899999999999985         9999999999753

the domains occurs between pairs og RING fingers

>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.06  E-value=3.7e-07  Score=52.57  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCccC
Q psy7602          57 DVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILN   94 (95)
Q Consensus        57 ~ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~~   94 (95)
                      +||+++++++||+.++         +++|||+|||+.+
T Consensus         1 eky~~~~~~~~~~~~~---------~~~~Cp~~~C~~~   29 (64)
T PF01485_consen    1 EKYQKFLLKRYLESDP---------NIRWCPNPDCEYI   29 (64)
T ss_dssp             HCHHHCCCHS---S------------CC--TTSST---
T ss_pred             ChHHHHHHHHHHHCCC---------CccCCCCCCCccc
Confidence            5899999999998774         9999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=97.94  E-value=4e-06  Score=45.65  Aligned_cols=33  Identities=21%  Similarity=0.464  Sum_probs=21.6

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCc
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA   41 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~   41 (95)
                      ++-++|+|||.||.+|+..+.+..-.   .  .+.||.
T Consensus         9 ~~Pv~l~CGH~FC~~Cl~~~~~~~~~---~--~~~CP~   41 (42)
T PF15227_consen    9 KDPVSLPCGHSFCRSCLERLWKEPSG---S--GFSCPE   41 (42)
T ss_dssp             SSEEE-SSSSEEEHHHHHHHHCCSSS---S--T---SS
T ss_pred             CCccccCCcCHHHHHHHHHHHHccCC---c--CCCCcC
Confidence            45567999999999999999876432   2  277874

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.85  E-value=6.5e-06  Score=43.76  Aligned_cols=20  Identities=35%  Similarity=0.876  Sum_probs=18.3

Q ss_pred             ccCCCCchhhHHHHHHHHHh
Q psy7602           7 TGLECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~   26 (95)
                      ..+.|||.||.+||.+|++.
T Consensus        13 ~~~~CGH~fC~~C~~~~~~~   32 (39)
T PF13923_consen   13 VVTPCGHSFCKECIEKYLEK   32 (39)
T ss_dssp             EECTTSEEEEHHHHHHHHHC
T ss_pred             EECCCCCchhHHHHHHHHHC
Confidence            57899999999999999876

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.76  E-value=1.3e-05  Score=42.69  Aligned_cols=20  Identities=35%  Similarity=0.894  Sum_probs=18.6

Q ss_pred             ccCCCCchhhHHHHHHHHHh
Q psy7602           7 TGLECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~   26 (95)
                      ..++|||.||.+|+.+|++.
T Consensus        13 ~~~~C~H~fC~~C~~~~~~~   32 (41)
T PF00097_consen   13 ILLPCGHSFCRDCLRKWLEN   32 (41)
T ss_dssp             EETTTSEEEEHHHHHHHHHH
T ss_pred             EEecCCCcchHHHHHHHHHh
Confidence            37899999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.57  E-value=3.4e-05  Score=41.80  Aligned_cols=24  Identities=29%  Similarity=0.588  Sum_probs=20.9

Q ss_pred             CCCcccCCCCchhhHHHHHHHHHh
Q psy7602           3 STLMTGLECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         3 ~~~~~~l~CgH~FC~~C~~~yl~~   26 (95)
                      .+....++|||.|+.+|+.+|++.
T Consensus        13 ~~~~~~l~C~H~fh~~Ci~~~~~~   36 (44)
T PF13639_consen   13 GEKVVKLPCGHVFHRSCIKEWLKR   36 (44)
T ss_dssp             TSCEEEETTSEEEEHHHHHHHHHH
T ss_pred             CCeEEEccCCCeeCHHHHHHHHHh
Confidence            456677899999999999999966

...

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.42  E-value=8e-05  Score=40.84  Aligned_cols=29  Identities=24%  Similarity=0.570  Sum_probs=18.0

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecC
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACA   40 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp   40 (95)
                      ..|.|||.||++|+++.+.....     ..++||
T Consensus        15 ~~L~CGH~~c~~cl~~l~~~~~~-----~~~kCP   43 (43)
T PF13445_consen   15 MVLPCGHVFCKDCLQKLSKKSDR-----NRFKCP   43 (43)
T ss_dssp             EE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred             EEEeCccHHHHHHHHHHHhcCCC-----CeeeCc
Confidence            44889999999999999885432     257776

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.41  E-value=0.00015  Score=37.99  Aligned_cols=20  Identities=35%  Similarity=0.848  Sum_probs=16.9

Q ss_pred             ccCCCCchhhHHHHHHHHHh
Q psy7602           7 TGLECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~   26 (95)
                      ....|||.||.+|+..|++.
T Consensus        14 ~~~~C~H~~c~~C~~~~~~~   33 (45)
T cd00162          14 VLLPCGHVFCRSCIDKWLKS   33 (45)
T ss_pred             EecCCCChhcHHHHHHHHHh
Confidence            33459999999999999875

>smart00184 RING Ring finger

Probab=97.22  E-value=0.00029  Score=35.52  Aligned_cols=22  Identities=32%  Similarity=0.712  Sum_probs=19.0

Q ss_pred             CCcccCCCCchhhHHHHHHHHH
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLT   25 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~   25 (95)
                      +....+.|||.||.+|++.|++
T Consensus         9 ~~~~~~~C~H~~c~~C~~~~~~   30 (39)
T smart00184        9 KDPVVLPCGHTFCRSCIRKWLK   30 (39)
T ss_pred             CCcEEecCCChHHHHHHHHHHH
Confidence            4556678999999999999987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.03  E-value=0.00041  Score=49.22  Aligned_cols=51  Identities=16%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhc-------CCceeeeecCccccCcccccchhhhH
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQ-------EGMGQTIACAAHGCNILVDDGKPIEF   56 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~-------~g~~~~i~Cp~~~C~~~i~~~~i~~l   56 (95)
                      ++-+.+.|||.||..|+.+|+...-..       .......+||.  |+..|+...+..+
T Consensus        29 ~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv--CR~~Is~~~LvPi   86 (193)
T PLN03208         29 RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV--CKSDVSEATLVPI   86 (193)
T ss_pred             CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC--CCCcCChhcEEEe
Confidence            344557899999999999998753110       00112578996  9999988777665

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=96.96  E-value=0.00047  Score=38.26  Aligned_cols=35  Identities=26%  Similarity=0.584  Sum_probs=25.9

Q ss_pred             CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      .+...++|||. ||.+|+..++.   .      ..+||.  |+..|+
T Consensus        13 ~~~~~~pCgH~~~C~~C~~~~~~---~------~~~CP~--Cr~~i~   48 (50)
T PF13920_consen   13 RDVVLLPCGHLCFCEECAERLLK---R------KKKCPI--CRQPIE   48 (50)
T ss_dssp             SSEEEETTCEEEEEHHHHHHHHH---T------TSBBTT--TTBB-S
T ss_pred             CceEEeCCCChHHHHHHhHHhcc---c------CCCCCc--CChhhc
Confidence            45566799999 99999999998   1      246775  766554

...

>KOG0320|consensus

Probab=96.77  E-value=0.0009  Score=47.03  Aligned_cols=36  Identities=28%  Similarity=0.651  Sum_probs=25.4

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      ++..|||.||+.|++.-+..         .-+||.  |...|+..++
T Consensus       147 vsTkCGHvFC~~Cik~alk~---------~~~CP~--C~kkIt~k~~  182 (187)
T KOG0320|consen  147 VSTKCGHVFCSQCIKDALKN---------TNKCPT--CRKKITHKQF  182 (187)
T ss_pred             cccccchhHHHHHHHHHHHh---------CCCCCC--cccccchhhh
Confidence            56789999999998875543         245876  6556665544

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=96.76  E-value=0.001  Score=36.08  Aligned_cols=21  Identities=24%  Similarity=0.509  Sum_probs=17.9

Q ss_pred             CCcccCCCCchhhHHHHHHHH
Q psy7602           4 TLMTGLECSHRFCTQCWCEYL   24 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl   24 (95)
                      .....++|||.||.+|+.+..
T Consensus        13 ~~~~l~~CgH~~C~~C~~~~~   33 (44)
T PF14634_consen   13 RRPRLTSCGHIFCEKCLKKLK   33 (44)
T ss_pred             CCeEEcccCCHHHHHHHHhhc
Confidence            456678999999999999876

>KOG0006|consensus

Probab=96.69  E-value=0.0027  Score=48.60  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=51.3

Q ss_pred             cccCCCC--chhhHHHHHHHHHhhhhcCCce-------eeeecCccccCcccccchhhhH-----------HHHHHHHHH
Q psy7602           6 MTGLECS--HRFCTQCWCEYLTTKIIQEGMG-------QTIACAAHGCNILVDDGKPIEF-----------DVYQGILSN   65 (95)
Q Consensus         6 ~~~l~Cg--H~FC~~C~~~yl~~~I~~~g~~-------~~i~Cp~~~C~~~i~~~~i~~l-----------~ky~~~l~~   65 (95)
                      ...+.|.  |.-|.+|++.|..+++. +-+.       ..+.||+ +|..    +.|+.+           ++|+++-.+
T Consensus       234 vlvf~Cns~HvtC~dCFr~yc~~Rl~-~rqf~~~p~~gyslpc~a-gc~~----s~i~e~HHF~ilg~e~Y~rYQr~atE  307 (446)
T KOG0006|consen  234 VLVFQCNSRHVTCLDCFRLYCVTRLN-DRQFVHDPQLGYSLPCVA-GCPN----SLIKELHHFRILGEEQYNRYQRYATE  307 (446)
T ss_pred             eEEEecCCceeehHHhhhhHhhhccc-ccccccCccccccccccC-CCch----HHHHhhhhheecchhHHHHHHHhhhh
Confidence            3446788  99999999999999996 4442       1356665 5653    333333           899999888


Q ss_pred             HHHhhCCCCCCCCCCCCeeeCCCCCCcc
Q psy7602          66 QVTNCRLASLVPCKCSWVRFPPGADFIL   93 (95)
Q Consensus        66 ~~v~~~~~~~~~~~~~~~~~CP~~~C~~   93 (95)
                      .+|....         .+ -||+|+|+.
T Consensus       308 e~vlq~g---------GV-lCP~pgCG~  325 (446)
T KOG0006|consen  308 ECVLQMG---------GV-LCPRPGCGA  325 (446)
T ss_pred             hheeecC---------CE-ecCCCCCCc
Confidence            8887773         34 499999874

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.53  E-value=0.0013  Score=38.04  Aligned_cols=33  Identities=24%  Similarity=0.646  Sum_probs=22.1

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccC
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN   45 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~   45 (95)
                      +.+..|||.|-++-+.+||    + .+  ..++||..||+
T Consensus        25 V~s~~C~H~fek~aI~~~i----~-~~--~~~~CPv~GC~   57 (57)
T PF11789_consen   25 VKSKKCGHTFEKEAILQYI----Q-RN--GSKRCPVAGCN   57 (57)
T ss_dssp             EEESSS--EEEHHHHHHHC----T-TT--S-EE-SCCC-S
T ss_pred             cCcCCCCCeecHHHHHHHH----H-hc--CCCCCCCCCCC
Confidence            3456899999999999999    3 22  25899999995

>smart00504 Ubox Modified RING finger domain

Probab=96.45  E-value=0.0047  Score=35.17  Aligned_cols=42  Identities=7%  Similarity=-0.059  Sum_probs=29.3

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF   56 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l   56 (95)
                      ++-+.++|||.||++|+.+|++.    +     ..||.  |+..++.+++...
T Consensus        12 ~~Pv~~~~G~v~~~~~i~~~~~~----~-----~~cP~--~~~~~~~~~l~~~   53 (63)
T smart00504       12 KDPVILPSGQTYERRAIEKWLLS----H-----GTDPV--TGQPLTHEDLIPN   53 (63)
T ss_pred             CCCEECCCCCEEeHHHHHHHHHH----C-----CCCCC--CcCCCChhhceeC
Confidence            34456789999999999999975    1     25665  5666665555443

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0317|consensus

Probab=96.38  E-value=0.0028  Score=47.41  Aligned_cols=41  Identities=27%  Similarity=0.573  Sum_probs=32.4

Q ss_pred             CCCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           3 STLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         3 ~~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      .++-..++|||.||-.|+.+|+..+- |        ||.  |...+.++.+.
T Consensus       249 ~~~pSaTpCGHiFCWsCI~~w~~ek~-e--------CPl--CR~~~~pskvi  289 (293)
T KOG0317|consen  249 RSNPSATPCGHIFCWSCILEWCSEKA-E--------CPL--CREKFQPSKVI  289 (293)
T ss_pred             CCCCCcCcCcchHHHHHHHHHHcccc-C--------CCc--ccccCCCccee
Confidence            34566789999999999999998866 2        875  88887777653

>KOG1002|consensus

Probab=96.29  E-value=0.0031  Score=51.07  Aligned_cols=44  Identities=25%  Similarity=0.614  Sum_probs=34.7

Q ss_pred             CCCCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           2 PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         2 ~~~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      |+++.+..+|.|.||+.|+++|+..-..  |.  .++||.  |...++.+
T Consensus       545 ~aed~i~s~ChH~FCrlCi~eyv~~f~~--~~--nvtCP~--C~i~LsiD  588 (791)
T KOG1002|consen  545 PAEDYIESSCHHKFCRLCIKEYVESFME--NN--NVTCPV--CHIGLSID  588 (791)
T ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHhhhc--cc--CCCCcc--cccccccc
Confidence            4566777899999999999999998773  33  489996  87665544

>KOG2164|consensus

Probab=95.95  E-value=0.0038  Score=49.83  Aligned_cols=43  Identities=23%  Similarity=0.593  Sum_probs=34.3

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF   56 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l   56 (95)
                      .+.|||.||-.|+-+|+..... .+   ...||-  |...|...++..+
T Consensus       201 ~t~CGHiFC~~CiLqy~~~s~~-~~---~~~CPi--C~s~I~~kdl~pv  243 (513)
T KOG2164|consen  201 RTNCGHIFCGPCILQYWNYSAI-KG---PCSCPI--CRSTITLKDLLPV  243 (513)
T ss_pred             ccccCceeeHHHHHHHHhhhcc-cC---CccCCc--hhhhccccceeee
Confidence            3569999999999999998832 22   578986  9988888777665

>KOG0978|consensus

Probab=95.88  E-value=0.0035  Score=51.75  Aligned_cols=42  Identities=21%  Similarity=0.427  Sum_probs=33.5

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhh
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIE   55 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~   55 (95)
                      .+++...|||.||.+|.+..+.++-+        +||.  |+.-+...+|..
T Consensus       654 Kd~vI~kC~H~FC~~Cvq~r~etRqR--------KCP~--Cn~aFganDv~~  695 (698)
T KOG0978|consen  654 KDAVITKCGHVFCEECVQTRYETRQR--------KCPK--CNAAFGANDVHR  695 (698)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcC--------CCCC--CCCCCCcccccc
Confidence            45667789999999999999887653        5884  888888877754

>PHA02926 zinc finger-like protein; Provisional

Probab=95.37  E-value=0.015  Score=42.44  Aligned_cols=36  Identities=25%  Similarity=0.563  Sum_probs=27.2

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV   48 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i   48 (95)
                      ..+|+|.||..|++++-.++- +.|.  .-.||.  |+..+
T Consensus       194 L~~CnHsFCl~CIr~Wr~~r~-~~~~--~rsCPi--CR~~f  229 (242)
T PHA02926        194 LDSCNHIFCITCINIWHRTRR-ETGA--SDNCPI--CRTRF  229 (242)
T ss_pred             cCCCCchHHHHHHHHHHHhcc-ccCc--CCcCCC--Cccee
Confidence            348999999999999999865 2343  468997  77543

>TIGR00599 rad18 DNA repair protein rad18

Probab=95.12  E-value=0.023  Score=44.35  Aligned_cols=34  Identities=26%  Similarity=0.605  Sum_probs=25.1

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      +.++|||.||..|++.|+..      .   ..||.  |...+..+
T Consensus        40 vitpCgH~FCs~CI~~~l~~------~---~~CP~--Cr~~~~~~   73 (397)
T TIGR00599        40 VLTSCSHTFCSLCIRRCLSN------Q---PKCPL--CRAEDQES   73 (397)
T ss_pred             cCCCCCCchhHHHHHHHHhC------C---CCCCC--CCCccccc
Confidence            45799999999999999853      1   26874  77665543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0823|consensus

Probab=95.12  E-value=0.011  Score=43.08  Aligned_cols=45  Identities=22%  Similarity=0.444  Sum_probs=35.1

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF   56 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l   56 (95)
                      ++-+...|||-||=-|+.+|+..+-.      .-.||.  |+..|+.+.|-.|
T Consensus        58 kdPVvTlCGHLFCWpClyqWl~~~~~------~~~cPV--CK~~Vs~~~vvPl  102 (230)
T KOG0823|consen   58 KDPVVTLCGHLFCWPCLYQWLQTRPN------SKECPV--CKAEVSIDTVVPL  102 (230)
T ss_pred             CCCEEeecccceehHHHHHHHhhcCC------CeeCCc--cccccccceEEee
Confidence            44555679999999999999998764      134665  9998888887666

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=95.09  E-value=0.02  Score=43.30  Aligned_cols=33  Identities=21%  Similarity=0.653  Sum_probs=24.4

Q ss_pred             CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602          10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK   52 (95)
Q Consensus        10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~   52 (95)
                      .|||.||..|+...+    . .|.   ..||  .|+..+....
T Consensus        25 ~CGH~~C~sCv~~l~----~-~~~---~~CP--~C~~~lrk~~   57 (309)
T TIGR00570        25 VCGHTLCESCVDLLF----V-RGS---GSCP--ECDTPLRKNN   57 (309)
T ss_pred             CCCCcccHHHHHHHh----c-CCC---CCCC--CCCCccchhh
Confidence            799999999999986    2 232   4799  6877655544

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02929 N1R/p28-like protein; Provisional

Probab=94.18  E-value=0.029  Score=41.02  Aligned_cols=31  Identities=23%  Similarity=0.551  Sum_probs=23.1

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ..+|+|.||.+|+.++++.         .-.||.  |+..+.
T Consensus       197 l~~C~H~FC~~CI~~Wl~~---------~~tCPl--CR~~~~  227 (238)
T PHA02929        197 LSNCNHVFCIECIDIWKKE---------KNTCPV--CRTPFI  227 (238)
T ss_pred             cCCCCCcccHHHHHHHHhc---------CCCCCC--CCCEee
Confidence            3589999999999999753         136886  776543

>KOG2177|consensus

Probab=93.02  E-value=0.054  Score=37.70  Aligned_cols=28  Identities=29%  Similarity=0.834  Sum_probs=23.1

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccC
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN   45 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~   45 (95)
                      ..+.|||.||..|+.....         ..+.||.  |.
T Consensus        27 ~~l~C~H~~c~~C~~~~~~---------~~~~Cp~--cr   54 (386)
T KOG2177|consen   27 VLLPCGHNFCRACLTRSWE---------GPLSCPV--CR   54 (386)
T ss_pred             ccccccchHhHHHHHHhcC---------CCcCCcc--cC
Confidence            5678999999999999888         2378886  66

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=90.94  E-value=0.34  Score=28.76  Aligned_cols=57  Identities=7%  Similarity=-0.075  Sum_probs=32.3

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR   71 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~   71 (95)
                      .+-+.+++||.|.+.++.+|++.  .      ...||.  ++..++.+++..-...++ .++.|++.|
T Consensus        15 ~dPVi~~~G~tyer~~I~~~l~~--~------~~~~P~--t~~~l~~~~l~pn~~Lk~-~I~~~~~~~   71 (73)
T PF04564_consen   15 RDPVILPSGHTYERSAIERWLEQ--N------GGTDPF--TRQPLSESDLIPNRALKS-AIEEWCAEN   71 (73)
T ss_dssp             SSEEEETTSEEEEHHHHHHHHCT--T------SSB-TT--T-SB-SGGGSEE-HHHHH-HHHHHHHHC
T ss_pred             hCceeCCcCCEEcHHHHHHHHHc--C------CCCCCC--CCCcCCcccceECHHHHH-HHHHHHHHc
Confidence            44456789999999999999987  1      234554  456666655433222222 233555554

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.99  E-value=0.13  Score=30.80  Aligned_cols=18  Identities=28%  Similarity=0.648  Sum_probs=16.1

Q ss_pred             CCCCchhhHHHHHHHHHh
Q psy7602           9 LECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~   26 (95)
                      ..|||.|-..|++++|+.
T Consensus        48 ~~C~H~FH~~Ci~~Wl~~   65 (73)
T PF12678_consen   48 GPCGHIFHFHCISQWLKQ   65 (73)
T ss_dssp             ETTSEEEEHHHHHHHHTT
T ss_pred             cccCCCEEHHHHHHHHhc
Confidence            479999999999999954

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=89.89  E-value=0.16  Score=38.60  Aligned_cols=38  Identities=24%  Similarity=0.552  Sum_probs=27.2

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK   52 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~   52 (95)
                      ..|||.||.-|++.||..+-+      --.|-++-|...+..+.
T Consensus        41 TtCgHtFCslCIR~hL~~qp~------CP~Cr~~~~esrlr~~s   78 (391)
T COG5432          41 TTCGHTFCSLCIRRHLGTQPF------CPVCREDPCESRLRGSS   78 (391)
T ss_pred             cccccchhHHHHHHHhcCCCC------CccccccHHhhhcccch
Confidence            579999999999999976442      23566666766555443

>KOG0287|consensus

Probab=87.85  E-value=0.31  Score=37.81  Aligned_cols=34  Identities=32%  Similarity=0.792  Sum_probs=24.6

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      .+|+|.||.-|++.||..+-+         ||.  |-..+.++.+
T Consensus        39 tpCsHtfCSlCIR~~L~~~p~---------CP~--C~~~~~Es~L   72 (442)
T KOG0287|consen   39 TPCSHTFCSLCIRKFLSYKPQ---------CPT--CCVTVTESDL   72 (442)
T ss_pred             ccccchHHHHHHHHHhccCCC---------CCc--eecccchhhh
Confidence            479999999999999976542         543  6655555544

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.82  E-value=0.67  Score=34.54  Aligned_cols=42  Identities=26%  Similarity=0.406  Sum_probs=26.5

Q ss_pred             CCCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           3 STLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         3 ~~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +.....+.|||.||..|+-...+.+-       .-.||.  |.....+..+
T Consensus       225 ~~~ps~t~CgHlFC~~Cl~~~~t~~k-------~~~Cpl--CRak~~pk~v  266 (271)
T COG5574         225 PEVPSCTPCGHLFCLSCLLISWTKKK-------YEFCPL--CRAKVYPKKV  266 (271)
T ss_pred             cCCcccccccchhhHHHHHHHHHhhc-------cccCch--hhhhccchhh
Confidence            34455578999999999987532221       234765  7766555443

>KOG4739|consensus

Probab=83.53  E-value=0.42  Score=34.94  Aligned_cols=18  Identities=28%  Similarity=0.610  Sum_probs=14.8

Q ss_pred             CCcccCCCCchhhHHHHH
Q psy7602           4 TLMTGLECSHRFCTQCWC   21 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~   21 (95)
                      ..++.++|+|+||..|.+
T Consensus        16 ~~f~LTaC~HvfC~~C~k   33 (233)
T KOG4739|consen   16 DPFFLTACRHVFCEPCLK   33 (233)
T ss_pred             Cceeeeechhhhhhhhcc
Confidence            456667999999999965

>KOG2660|consensus

Probab=82.64  E-value=0.44  Score=36.42  Aligned_cols=34  Identities=35%  Similarity=0.870  Sum_probs=25.7

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      ....|-|.||+.|+-.|++.         ...||.  |+..|..+
T Consensus        30 TI~eCLHTFCkSCivk~l~~---------~~~CP~--C~i~ih~t   63 (331)
T KOG2660|consen   30 TITECLHTFCKSCIVKYLEE---------SKYCPT--CDIVIHKT   63 (331)
T ss_pred             hHHHHHHHHHHHHHHHHHHH---------hccCCc--cceeccCc
Confidence            34579999999999999987         135775  77665554

>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length

Probab=81.19  E-value=1.3  Score=26.38  Aligned_cols=20  Identities=20%  Similarity=0.687  Sum_probs=14.2

Q ss_pred             hhhHHHHHHHHHhhhhcCCc
Q psy7602          14 RFCTQCWCEYLTTKIIQEGM   33 (95)
Q Consensus        14 ~FC~~C~~~yl~~~I~~~g~   33 (95)
                      .||++|+..++.....+.|.
T Consensus        11 gFCRNCLskWy~~aA~~~g~   30 (68)
T PF06844_consen   11 GFCRNCLSKWYREAAEERGI   30 (68)
T ss_dssp             S--HHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHHHHhcCC
Confidence            49999999999998875453

The function of this family is unknown.; PDB: 2O35_A 3FYB_B.

>KOG0824|consensus

Probab=80.38  E-value=1.2  Score=33.90  Aligned_cols=40  Identities=28%  Similarity=0.559  Sum_probs=29.0

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF   56 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l   56 (95)
                      +.|.|+|.||--|+++-+..     +   ...|+.  |...|+++.+.+.
T Consensus        21 v~l~C~HkFCyiCiKGsy~n-----d---k~~Cav--CR~pids~i~~~p   60 (324)
T KOG0824|consen   21 VNLYCFHKFCYICIKGSYKN-----D---KKTCAV--CRFPIDSTIDFEP   60 (324)
T ss_pred             ccccccchhhhhhhcchhhc-----C---CCCCce--ecCCCCcchhcch
Confidence            56899999999998764432     2   235775  8888888876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	95
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	2e-06

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 41.4 bits (97), Expect = 2e-06
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 9  LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 45
           +C   FCT C  +Y+    I+EG+   I+C    C 
Sbjct: 24 AQCQCIFCTLCLKQYVELL-IKEGLETAISCPDAACP 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	95
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	99.7
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.18
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.13
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.02
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.01
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	97.96
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.92
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.9
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.82
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.82
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.81
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.8
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	97.78
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.77
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.69
2jmo_A	80	Parkin; IBR, E3 ligase, zinc binding domain, RBR;	97.59
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.55
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.53
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.52
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.5
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.5
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	97.49
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.37
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.35
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	97.31
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.27
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.26
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.26
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.23
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.23
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.22
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.16
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.1
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.08
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.02
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	96.99
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	96.98
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	96.98
1z6u_A	150	NP95-like ring finger protein isoform B; structura	96.95
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	96.89
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	96.83
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	96.73
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	96.66
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	96.66
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	96.63
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	96.54
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	96.46
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	96.31
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	96.28
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	96.16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.98
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	95.94
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	95.9
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	95.87
2ct7_A	86	Ring finger protein 31; IBR, structural genomics,	95.6
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	95.58
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	95.34
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	95.18
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	95.01
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	93.17
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	91.93
2ea5_A	68	Cell growth regulator with ring finger domain prot	91.57
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	91.3
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	89.46
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	89.42
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	89.4
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	88.35
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	87.51
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	86.83
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	80.69

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.70  E-value=2.9e-18  Score=106.52  Aligned_cols=67  Identities=22%  Similarity=0.472  Sum_probs=57.9

Q ss_pred             CCcccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcc--cccchhhhH------HHHHHHHHHHHHhhC
Q psy7602           4 TLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL--VDDGKPIEF------DVYQGILSNQVTNCR   71 (95)
Q Consensus         4 ~~~~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~--i~~~~i~~l------~ky~~~l~~~~v~~~   71 (95)
                      .+++.+ .|||.||++||++|++.+|. +|...+|+||+++|+..  ++++.++.+      ++|+++++++||+++
T Consensus        18 ~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~~~~~~~v~~~   93 (94)
T 1wim_A           18 EQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFERSGPSS   93 (94)
T ss_dssp             GGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHHHHHHHSSCSSC
T ss_pred             ccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHHHHHHHhhhccC
Confidence            345554 69999999999999999997 67656899999999999  999999887      899999999988764

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=8.6e-07  Score=52.33  Aligned_cols=44  Identities=20%  Similarity=0.530  Sum_probs=34.5

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +...+.|||.||.+|+..|+..+.. .+.  ...||.  |+..+..+.+
T Consensus        31 ~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~--~~~CP~--Cr~~~~~~~~   74 (85)
T 2ecv_A           31 QPLSLDCGHSFCQACLTANHKKSML-DKG--ESSCPV--CRISYQPENI   74 (85)
T ss_dssp             SCBCCSSSCCBCTTHHHHHHHHHHH-TTS--CCCCTT--TCCSSCSSSC
T ss_pred             CceeCCCCCHHHHHHHHHHHHHhhc-CCC--CCcCCC--CCCccCHHhc
Confidence            3456799999999999999999876 333  589996  9887776543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.13  E-value=1.8e-06  Score=54.48  Aligned_cols=64  Identities=17%  Similarity=0.231  Sum_probs=43.5

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH-HHHHHHHHHHHHhhCCCCCCCCCCCCe
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF-DVYQGILSNQVTNCRLASLVPCKCSWV   83 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l-~ky~~~l~~~~v~~~~~~~~~~~~~~~   83 (95)
                      +...+.|||.||..|+.+++...        ...||.  |+..+..+.+... ....     +.++.-           .
T Consensus        35 ~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~~~l~-----~~i~~l-----------~   88 (116)
T 1rmd_A           35 DPVETSCKHLFCRICILRCLKVM--------GSYCPS--CRYPCFPTDLESPVKSFL-----NILNSL-----------M   88 (116)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHHT--------CSBCTT--TCCBCCGGGCBCCCHHHH-----HHHHHC-----------E
T ss_pred             CcEEcCCCCcccHHHHHHHHhHC--------cCcCCC--CCCCCCHhhccccHHHHH-----HHHHHh-----------c
Confidence            34557999999999999999752        236885  9988887665443 2222     223333           3


Q ss_pred             eeCCCCCCccC
Q psy7602          84 RFPPGADFILN   94 (95)
Q Consensus        84 ~~CP~~~C~~~   94 (95)
                      .+||+.||+..
T Consensus        89 v~C~~~gC~~~   99 (116)
T 1rmd_A           89 VKCPAQDCNEE   99 (116)
T ss_dssp             EECCSTTCCCE
T ss_pred             CCCCCCCCcch
Confidence            35999899754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.04  E-value=2.7e-06  Score=50.14  Aligned_cols=43  Identities=19%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      ...+.|||.||..|+..|+..... .+.  ...||.  |+..+..+.+
T Consensus        32 p~~~~CgH~fC~~Ci~~~~~~~~~-~~~--~~~CP~--Cr~~~~~~~~   74 (85)
T 2ecw_A           32 PVSADCNHSFCRACITLNYESNRN-TDG--KGNCPV--CRVPYPFGNL   74 (85)
T ss_dssp             CEECTTSCCBCHHHHHHHHHHSBC-TTS--CBCCTT--TCCCCCTTCC
T ss_pred             ceeCCCCCHHHHHHHHHHHHhccC-CCC--CCCCCC--CCCcCCHHhC
Confidence            345789999999999999998764 333  589985  8887776543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.02  E-value=4.9e-06  Score=52.73  Aligned_cols=64  Identities=14%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCee
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVR   84 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~~~~~~~~~~~~~~   84 (95)
                      +.+.+.|||.||.+|+..++..+-        ..||.  |+..+..+.+..-..     +++.|+.-           ..
T Consensus        30 ~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~--Cr~~~~~~~~~~~~~-----l~~~i~~l-----------~v   83 (118)
T 3hct_A           30 EAVQTPCGHRFCKACIIKSIRDAG--------HKCPV--DNEILLENQLFPDNF-----AKREILSL-----------MV   83 (118)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHHHC--------SBCTT--TCCBCCGGGCEECHH-----HHHHHHTS-----------EE
T ss_pred             CeEECCcCChhhHHHHHHHHhhCC--------CCCCC--CCCCcCHHhcccCHH-----HHHHHccc-----------ee
Confidence            345679999999999999987531        27885  888777655432222     33344433           34


Q ss_pred             eCCCCCCccC
Q psy7602          85 FPPGADFILN   94 (95)
Q Consensus        85 ~CP~~~C~~~   94 (95)
                      .||+.+|+..
T Consensus        84 ~C~n~gC~~~   93 (118)
T 3hct_A           84 KCPNEGCLHK   93 (118)
T ss_dssp             ECSSTTCCCE
T ss_pred             ECCCCCCCCE
Confidence            5888888764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.01  E-value=7.3e-07  Score=52.32  Aligned_cols=45  Identities=18%  Similarity=0.339  Sum_probs=34.0

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +...++|||.||.+|+..|+..... ++. ....||.  |+..+..+.+
T Consensus        24 ~p~~l~CgH~fC~~Ci~~~~~~~~~-~~~-~~~~CP~--Cr~~~~~~~l   68 (79)
T 2egp_A           24 EPLSLDCGHSLCRACITVSNKEAVT-SMG-GKSSCPV--CGISYSFEHL   68 (79)
T ss_dssp             SCCCCSSSCCCCHHHHSCCCCCCSS-SCC-CCCCCSS--SCCCCCSSGG
T ss_pred             CeeECCCCCHHHHHHHHHHHHhccc-CCC-CCCcCCC--CCCcCCHhhC
Confidence            3445799999999999999988664 232 3689996  9887776544

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=97.96  E-value=5.7e-07  Score=59.33  Aligned_cols=68  Identities=19%  Similarity=0.357  Sum_probs=40.4

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH----HHHHHHHHHHHHhhCCCCCCCCCCC
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF----DVYQGILSNQVTNCRLASLVPCKCS   81 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l----~ky~~~l~~~~v~~~~~~~~~~~~~   81 (95)
                      -+.+.|||.||..|+..++..     +   ...||.  |+..+..+....+    +.|....+++.|.+-          
T Consensus        44 pv~~~CgH~FC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L----------  103 (141)
T 3knv_A           44 PFQAQCGHRYCSFCLASILSS-----G---PQNCAA--CVHEGIYEEGISILESSSAFPDNAARREVESL----------  103 (141)
T ss_dssp             EEECTTSCEEEHHHHHHHGGG-----S---CEECHH--HHHTTCCCTTTTEECGGGCEECHHHHHHHHTS----------
T ss_pred             cEECCCCCccCHHHHHHHHhc-----C---CCCCCC--CCCcccccccccccchhhhcccHHHHHHHccc----------
Confidence            355799999999999999842     2   257885  7765433221111    122222233445433          


Q ss_pred             CeeeCCCCCCccC
Q psy7602          82 WVRFPPGADFILN   94 (95)
Q Consensus        82 ~~~~CP~~~C~~~   94 (95)
                       ..+||+.+|+..
T Consensus       104 -~v~Cpn~GC~~~  115 (141)
T 3knv_A          104 -PAVCPSDGCTWK  115 (141)
T ss_dssp             -EEECCSTTCCCE
T ss_pred             -ccccCCCCCCCE
Confidence             345999999764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.92  E-value=3.2e-06  Score=50.35  Aligned_cols=43  Identities=23%  Similarity=0.543  Sum_probs=33.6

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF   56 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l   56 (95)
                      ...+.|||.||.+|+.+|+..+.      ..++||.  |+..+....+..|
T Consensus        32 ~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~--Cr~~~~~~~i~~l   74 (88)
T 2ct2_A           32 PKLLHCGHTICRQCLEKLLASSI------NGVRCPF--CSKITRITSLTQL   74 (88)
T ss_dssp             EEECSSSCEEEHHHHHHHHHHCS------SCBCCTT--TCCCBCCSSTTTS
T ss_pred             eEECCCCChhhHHHHHHHHHcCC------CCcCCCC--CCCcccchhHHHH
Confidence            45679999999999999997641      1478996  9988877766554

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.90  E-value=1.4e-05  Score=49.57  Aligned_cols=41  Identities=24%  Similarity=0.545  Sum_probs=30.9

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +...++|||.||..|+..++..+   .+   ...||.  |+..+....+
T Consensus        33 ~p~~~~CgH~fC~~Ci~~~~~~~---~~---~~~CP~--Cr~~~~~~~~   73 (112)
T 1jm7_A           33 EPVSTKCDHIFCKFCMLKLLNQK---KG---PSQCPL--CKNDITKRSL   73 (112)
T ss_dssp             SCCBCTTSCCCCSHHHHHHHHSS---SS---SCCCTT--TSCCCCTTTC
T ss_pred             CeEECCCCCHHHHHHHHHHHHhC---CC---CCCCcC--CCCcCCHhhc
Confidence            34557999999999999998753   12   378996  8887776554

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=8.4e-06  Score=46.45  Aligned_cols=38  Identities=32%  Similarity=0.683  Sum_probs=29.0

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      ...+.|||.||.+|+..++.   .  +   ...||.  |+..+..+.+
T Consensus        28 p~~~~CgH~fC~~Ci~~~~~---~--~---~~~CP~--Cr~~~~~~~i   65 (66)
T 2ecy_A           28 PKQTECGHRFCESCMAALLS---S--S---SPKCTA--CQESIVKDKV   65 (66)
T ss_dssp             CCCCSSSCCCCHHHHHHHHT---T--S---SCCCTT--TCCCCCTTTC
T ss_pred             eeECCCCCHHHHHHHHHHHH---h--C---cCCCCC--CCcCCChhhc
Confidence            34479999999999999986   1  1   357986  8888776654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.82  E-value=4.9e-06  Score=46.63  Aligned_cols=38  Identities=26%  Similarity=0.686  Sum_probs=29.5

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      ...+.|||.||.+|+.+|++.         ...||.  |+..+..+++.
T Consensus        23 ~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~~   60 (64)
T 2xeu_A           23 IVSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKINHKRYH   60 (64)
T ss_dssp             EEEETTSCEEEHHHHHHHHHH---------CSBCTT--TCCBCTTTCEE
T ss_pred             EEeCCCCCchhHHHHHHHHHc---------CCCCCC--CCccCCcccee
Confidence            356799999999999999864         137885  88888776553

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.81  E-value=6.2e-06  Score=47.29  Aligned_cols=38  Identities=26%  Similarity=0.677  Sum_probs=29.7

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      ...+.|||.||.+|+.+|++.+         .+||.  |+..+..+.+.
T Consensus        30 ~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~~~   67 (71)
T 3ng2_A           30 IVSTECGHVFCSQCLRDSLKNA---------NTCPT--CRKKINHKRYH   67 (71)
T ss_dssp             EEECTTSCEEEHHHHHHHHHHC---------SBCTT--TCCBCCCCSCC
T ss_pred             eEeCCCCChHhHHHHHHHHHcC---------CCCCC--CCCccChhhee
Confidence            3668999999999999998632         37885  88888776654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.80  E-value=2e-05  Score=52.63  Aligned_cols=39  Identities=21%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +-+.++|||.||..|+.+++..+.        .+||.  |+..+..+.+
T Consensus        30 ~pv~~~CgH~fC~~Ci~~~~~~~~--------~~CP~--Cr~~~~~~~~   68 (170)
T 3hcs_A           30 EAVQTPCGHRFCKACIIKSIRDAG--------HKCPV--DNEILLENQL   68 (170)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHHHC--------SBCTT--TCCBCCGGGC
T ss_pred             CcEECCCCCHHHHHHHHHHHHhCC--------CCCCC--CccCcchhhh
Confidence            335579999999999999987532        16764  6666665443

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.78  E-value=6.3e-06  Score=47.57  Aligned_cols=41  Identities=22%  Similarity=0.503  Sum_probs=30.8

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +...+.|||.||.+|+..+++.    .+  ....||.  |+..+..+.+
T Consensus        32 ~~~~~~CgH~fC~~Ci~~~~~~----~~--~~~~CP~--Cr~~~~~~~~   72 (73)
T 2ysl_A           32 KPVTIDCGHNFCLKCITQIGET----SC--GFFKCPL--CKTSVRKNAI   72 (73)
T ss_dssp             SEEECTTCCEEEHHHHHHHCSS----SC--SCCCCSS--SCCCCCCCCC
T ss_pred             CeEEcCCCChhhHHHHHHHHHc----CC--CCCCCCC--CCCcCCcccC
Confidence            3455799999999999999862    12  2578986  9888876654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.77  E-value=1e-05  Score=45.95  Aligned_cols=38  Identities=18%  Similarity=0.417  Sum_probs=28.9

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      ..++|||.||.+|+.+++..     +   ..+||.  |+..+..+.+.
T Consensus        22 ~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~~~~   59 (65)
T 1g25_A           22 MVNVCGHTLCESCVDLLFVR-----G---AGNCPE--CGTPLRKSNFR   59 (65)
T ss_dssp             EECTTCCCEEHHHHHHHHHT-----T---SSSCTT--TCCCCSSCCCE
T ss_pred             ecCCCCCHhHHHHHHHHHHc-----C---CCcCCC--CCCccccccce
Confidence            45799999999999999752     2   357885  98888766553

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=2.5e-05  Score=47.84  Aligned_cols=47  Identities=11%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             CCcccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcc-cccchh
Q psy7602           4 TLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL-VDDGKP   53 (95)
Q Consensus         4 ~~~~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~-i~~~~i   53 (95)
                      .+-+.+ .|||.||+.|+.+|+...-. .+  ...+||..+|... +..+.+
T Consensus        18 ~dPV~~~~cGh~f~r~cI~~~l~~~~~-~~--~~~~CP~tgc~~~~l~~~~L   66 (94)
T 2yu4_A           18 KKPVKNKVCGHTYEEDAIVRMIESRQK-RK--KKAYCPQIGCSHTDIRKSDL   66 (94)
T ss_dssp             SSEEEESSSCCEEEHHHHHHHHHHHHT-TT--CCBCCCSTTCCCCCBCGGGE
T ss_pred             cCCEEcCCCCCeecHHHHHHHHHHccC-cC--CCCCCCcCcCcccccCHhhC
Confidence            444566 49999999999999987532 12  2578999999866 665544

>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}

Probab=97.59  E-value=4.6e-07  Score=54.74  Aligned_cols=27  Identities=11%  Similarity=-0.105  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCcc
Q psy7602          57 DVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFIL   93 (95)
Q Consensus        57 ~ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~   93 (95)
                      +||+++++++||+++          .++|||+|||+.
T Consensus         9 ~rY~~~~~e~~v~~~----------~~~~CP~p~C~~   35 (80)
T 2jmo_A            9 NRYQQYGAEECVLQM----------GGVLCPRPGCGA   35 (80)
T ss_dssp             CSCCCSSSCCSSCCC----------SSCCCCSSSCCC
T ss_pred             HHHHHHHHHHHhhhC----------CcEECCCCCCCc
Confidence            688999999999887          599999999986

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.55  E-value=4.5e-05  Score=44.09  Aligned_cols=34  Identities=35%  Similarity=0.840  Sum_probs=26.6

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +.|||.||..|+.+++..         ...||.  |+..+..+.+
T Consensus        32 ~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~   65 (72)
T 2djb_A           32 TECLHTFCKSCIVRHFYY---------SNRCPK--CNIVVHQTQP   65 (72)
T ss_dssp             SSSCCEECHHHHHHHHHH---------CSSCTT--TCCCCCSSCS
T ss_pred             CCCCCHHHHHHHHHHHHc---------CCcCCC--cCcccCcccc
Confidence            499999999999999954         246885  8887776544

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.53  E-value=3.4e-05  Score=45.09  Aligned_cols=39  Identities=8%  Similarity=0.072  Sum_probs=29.2

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +-+.++|||.||+.|+.+|+..     |   ..+||.  |+..+..+.+
T Consensus        20 ~Pv~~~CgH~fc~~Ci~~~~~~-----~---~~~CP~--C~~~~~~~~l   58 (78)
T 1t1h_A           20 DPVIVSTGQTYERSSIQKWLDA-----G---HKTCPK--SQETLLHAGL   58 (78)
T ss_dssp             SEEEETTTEEEEHHHHHHHHTT-----T---CCBCTT--TCCBCSSCCC
T ss_pred             CCEEcCCCCeecHHHHHHHHHH-----C---cCCCCC--CcCCCChhhC
Confidence            4455799999999999999962     2   357886  8877765543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.52  E-value=3.6e-05  Score=41.92  Aligned_cols=32  Identities=25%  Similarity=0.503  Sum_probs=24.8

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV   48 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i   48 (95)
                      ...+.|||.||.+|+.+|++..         ..||.  |+..+
T Consensus        22 ~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~   53 (55)
T 2ecm_A           22 AHVLPCGHLLHRTCYEEMLKEG---------YRCPL--CSGPS   53 (55)
T ss_dssp             EEECTTSCEEETTHHHHHHHHT---------CCCTT--SCCSS
T ss_pred             eEecCCCCcccHHHHHHHHHcC---------CcCCC--CCCcC
Confidence            5568999999999999998763         45774  66554

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.50  E-value=2.2e-05  Score=49.57  Aligned_cols=37  Identities=27%  Similarity=0.715  Sum_probs=28.1

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      ...+.|||.||.+|+.+|++.+         ..||.  |+..++...+
T Consensus        27 ~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~l   63 (133)
T 4ap4_A           27 IVSTECGHVFCSQCLRDSLKNA---------NTCPT--CRKKINHKRY   63 (133)
T ss_dssp             EEEETTCCEEEHHHHHHHHTTC---------SBCTT--TCCBCTTTCE
T ss_pred             eEecCCCChhhHHHHHHHHHhC---------CCCCC--CCCcCccccc
Confidence            3678999999999999998642         26775  7777665554

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.50  E-value=5.4e-05  Score=46.66  Aligned_cols=39  Identities=21%  Similarity=0.436  Sum_probs=30.0

Q ss_pred             ccc-CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           6 MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         6 ~~~-l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      ... +.|||.||..|+..|+..+    +    ..||.  |+..+..+.+.
T Consensus        35 p~~~~~CgH~FC~~Ci~~~~~~~----~----~~CP~--Cr~~~~~~~l~   74 (100)
T 3lrq_A           35 ARLCPHCSKLCCFSCIRRWLTEQ----R----AQCPH--CRAPLQLRELV   74 (100)
T ss_dssp             EEECTTTCCEEEHHHHHHHHHHT----C----SBCTT--TCCBCCGGGCE
T ss_pred             ccccCCCCChhhHHHHHHHHHHC----c----CCCCC--CCCcCCHHHhH
Confidence            345 8999999999999998753    1    57885  88887766554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.49  E-value=1.4e-05  Score=46.14  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      +...+.|||.||.+|+..++...         ..||.  |+..+..+.+.
T Consensus        27 ~~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~~~   65 (71)
T 2d8t_A           27 HPVSLPCKHVFCYLCVKGASWLG---------KRCAL--CRQEIPEDFLD   65 (71)
T ss_dssp             SEEEETTTEEEEHHHHHHCTTCS---------SBCSS--SCCBCCHHHHS
T ss_pred             CCEEccCCCHHHHHHHHHHHHCC---------CcCcC--cCchhCHhhcc
Confidence            34567899999999999887431         47885  88888766543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=7.1e-05  Score=42.02  Aligned_cols=22  Identities=27%  Similarity=0.682  Sum_probs=18.8

Q ss_pred             CcccCCCCchhhHHHHHHHHHh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~   26 (95)
                      +...+.|||.||.+|+.++++.
T Consensus        32 ~p~~~~CgH~fC~~Ci~~~~~~   53 (63)
T 2ysj_A           32 KPVTIDCGHNFCLKCITQIGET   53 (63)
T ss_dssp             SCEECTTSSEECHHHHHHHHHH
T ss_pred             CeEEeCCCCcchHHHHHHHHHc
Confidence            3455799999999999999985

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.35  E-value=9e-05  Score=47.05  Aligned_cols=36  Identities=19%  Similarity=0.497  Sum_probs=27.9

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      +.+.++|||.||..|+..++..      .  ...||.  |+..+..
T Consensus        64 ~p~~~~CgH~fC~~Ci~~~~~~------~--~~~CP~--Cr~~~~~   99 (124)
T 3fl2_A           64 RPITTVCQHNVCKDCLDRSFRA------Q--VFSCPA--CRYDLGR   99 (124)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHT------T--CCBCTT--TCCBCCT
T ss_pred             CcEEeeCCCcccHHHHHHHHhH------C--cCCCCC--CCccCCC
Confidence            3456799999999999999871      1  357986  8887765

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.31  E-value=0.00013  Score=43.01  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=26.2

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      +.+.+.|||.||..|+..+++.         ...||.  |+..+.
T Consensus        27 ~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~   60 (81)
T 2csy_A           27 NPVVTKCRHYFCESCALEHFRA---------TPRCYI--CDQPTG   60 (81)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHH---------CSBCSS--SCCBCC
T ss_pred             CeeEccCCCHhHHHHHHHHHHC---------CCcCCC--cCcccc
Confidence            3445899999999999999863         236875  887765

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.27  E-value=0.00013  Score=43.44  Aligned_cols=34  Identities=24%  Similarity=0.603  Sum_probs=25.2

Q ss_pred             CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602          10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus        10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      .|||.||..||.++...     +   ...||.  |+..+....+
T Consensus        32 ~CGH~fC~~Cl~~~~~~-----~---~~~CP~--CR~~~~~~~~   65 (78)
T 1e4u_A           32 TCGYQICRFCWHRIRTD-----E---NGLCPA--CRKPYPEDPA   65 (78)
T ss_dssp             TTSCCCCHHHHHHHTTS-----S---CSBCTT--TCCBCSSCSS
T ss_pred             CCCCCcCHHHHHHHHhc-----C---CCCCCC--CCCccCCCch
Confidence            49999999999987532     2   367986  8887766543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.26  E-value=8.9e-05  Score=40.66  Aligned_cols=22  Identities=27%  Similarity=0.700  Sum_probs=18.3

Q ss_pred             CcccCCCCchhhHHHHHHHHHh
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~   26 (95)
                      +...++|||.||.+|+.+|+..
T Consensus        27 ~p~~~~CgH~fC~~Ci~~~~~~   48 (58)
T 2ecj_A           27 EPVIIECGHNFCKACITRWWED   48 (58)
T ss_dssp             SCCCCSSCCCCCHHHHHHHTTS
T ss_pred             ccEeCCCCCccCHHHHHHHHHh
Confidence            3455899999999999999764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.26  E-value=0.00042  Score=42.88  Aligned_cols=33  Identities=39%  Similarity=0.931  Sum_probs=25.5

Q ss_pred             ccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           7 TGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         7 ~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      +.+ .|||.||..|+.+++...         ..||.  |+..+..
T Consensus        29 ~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~--Cr~~~~~   62 (108)
T 2ckl_A           29 TTIIECLHSFCKTCIVRYLETS---------KYCPI--CDVQVHK   62 (108)
T ss_dssp             EEETTTCCEEEHHHHHHHHTSC---------SBCTT--TCCBSCS
T ss_pred             CEeCCCCChhhHHHHHHHHHhC---------CcCcC--CCccccc
Confidence            444 999999999999998642         56886  8876654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.23  E-value=0.0001  Score=53.58  Aligned_cols=39  Identities=23%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      ...|||.||+.|+.+|+..    .|   ...||..||+..+..+.+
T Consensus       197 s~~CGHsFcR~cI~~~~~~----~~---~~~CPvtGCr~~l~~~dL  235 (267)
T 3htk_C          197 SRKCNHVFDRDGIQNYLQG----YT---TRDCPQAACSQVVSMRDF  235 (267)
T ss_dssp             ESSSCCEEEHHHHHHHSTT----CS---CEECSGGGCSCEECGGGE
T ss_pred             eCCCCCcccHHHHHHHHHh----CC---CCCCCcccccCcCchhhC
Confidence            3589999999999999863    23   378999999987776654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.23  E-value=5.7e-05  Score=44.11  Aligned_cols=37  Identities=22%  Similarity=0.563  Sum_probs=27.7

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      ...+.|||.||.+|+.+|++.+         ..||.  |+..+....+
T Consensus        31 ~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~~   67 (78)
T 2ect_A           31 VRQLPCNHLFHDSCIVPWLEQH---------DSCPV--CRKSLTGQNT   67 (78)
T ss_dssp             EEECTTSCEEETTTTHHHHTTT---------CSCTT--TCCCCCCSCS
T ss_pred             EEEeCCCCeecHHHHHHHHHcC---------CcCcC--cCCccCCccc
Confidence            3457999999999999998531         36885  8877766543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.22  E-value=0.00015  Score=44.22  Aligned_cols=34  Identities=26%  Similarity=0.776  Sum_probs=26.2

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +.|||.||..|+.+|+..         ...||.  |+..+....+
T Consensus        39 ~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~l   72 (99)
T 2y43_A           39 PQCSHNYCSLCIRKFLSY---------KTQCPT--CCVTVTEPDL   72 (99)
T ss_dssp             TTTCCEEEHHHHHHHHTT---------CCBCTT--TCCBCCGGGC
T ss_pred             CCCCCHhhHHHHHHHHHC---------CCCCCC--CCCcCChhhC
Confidence            389999999999999863         147885  8887775443

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00019  Score=40.52  Aligned_cols=32  Identities=31%  Similarity=0.823  Sum_probs=24.9

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ..+.|||.||.+|+..|+..         ...||.  |+..++
T Consensus        36 ~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~   67 (69)
T 2ea6_A           36 VSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKIN   67 (69)
T ss_dssp             EECSSSCEEEHHHHHHHHHH---------CSSCTT--TCCCCC
T ss_pred             EeCCCCChhcHHHHHHHHHc---------CCCCCC--CCCccC
Confidence            56899999999999999864         136775  776654

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.10  E-value=0.00038  Score=43.27  Aligned_cols=37  Identities=19%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      .+.|||.||.+|+..|+.....   . ....||.  |+..+..
T Consensus        58 ~~~C~H~Fh~~Ci~~wl~~~~~---~-~~~~CP~--CR~~~~~   94 (114)
T 1v87_A           58 LTKCSHAFHLLCLLAMYCNGNK---D-GSLQCPS--CKTIYGE   94 (114)
T ss_dssp             ESSSCCEECHHHHHHHHHHTCC---S-SCCBCTT--TCCBSSS
T ss_pred             cCCCCCcccHHHHHHHHHcccC---C-CCCcCCC--CCCccCC
Confidence            5789999999999999955332   1 2468986  8876543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.08  E-value=0.00021  Score=40.63  Aligned_cols=36  Identities=25%  Similarity=0.565  Sum_probs=26.8

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      +....++|||.||..|+.+|+..+         .+||.  |+..+..
T Consensus        28 ~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~   63 (69)
T 2kiz_A           28 EDVRRLPCMHLFHQVCVDQWLITN---------KKCPI--CRVDIEA   63 (69)
T ss_dssp             SCEEECTTSCEEEHHHHHHHHHHC---------SBCTT--TCSBSCS
T ss_pred             CcEEEeCCCCHHHHHHHHHHHHcC---------CCCcC--cCccccC
Confidence            345568999999999999998651         14875  8776554

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.02  E-value=0.00014  Score=42.26  Aligned_cols=34  Identities=24%  Similarity=0.594  Sum_probs=25.9

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      ...++|||.||.+|+..|++.+         ..||.  |+..++.
T Consensus        39 ~~~l~C~H~fh~~Ci~~w~~~~---------~~CP~--Cr~~~~~   72 (75)
T 1x4j_A           39 LRVLPCNHEFHAKCVDKWLKAN---------RTCPI--CRADSGP   72 (75)
T ss_dssp             EEEETTTEEEETTHHHHHHHHC---------SSCTT--TCCCCCC
T ss_pred             EEEECCCCHhHHHHHHHHHHcC---------CcCcC--cCCcCCC
Confidence            3557899999999999998642         25875  8776654

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=96.99  E-value=0.00025  Score=42.85  Aligned_cols=34  Identities=26%  Similarity=0.594  Sum_probs=25.8

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      ...++|||.||..|+..|+..    .     -.||.  |+..++.
T Consensus        56 ~~~l~C~H~Fh~~Ci~~wl~~----~-----~~CP~--Cr~~~~~   89 (91)
T 2l0b_A           56 ATELPCHHYFHKPCVSIWLQK----S-----GTCPV--CRCMFPP   89 (91)
T ss_dssp             EEEETTTEEEEHHHHHHHHTT----T-----CBCTT--TCCBSSC
T ss_pred             EEecCCCChHHHHHHHHHHHc----C-----CcCcC--cCccCCC
Confidence            455889999999999999853    1     26875  8776654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=96.98  E-value=0.00022  Score=41.40  Aligned_cols=34  Identities=18%  Similarity=0.511  Sum_probs=25.9

Q ss_pred             CcccCC-CCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcc
Q psy7602           5 LMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL   47 (95)
Q Consensus         5 ~~~~l~-CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~   47 (95)
                      +-+.+. |||.||..|+.+++..+    +   ...||.  |+..
T Consensus        27 ~p~~~~~CgH~fC~~Ci~~~~~~~----~---~~~CP~--Cr~~   61 (74)
T 2yur_A           27 DAVVIPCCGNSYCDECIRTALLES----D---EHTCPT--CHQN   61 (74)
T ss_dssp             TCEECSSSCCEECTTHHHHHHHHS----S---SSCCSS--SCCS
T ss_pred             CCeEcCCCCCHHHHHHHHHHHHhc----C---CCcCCC--CCCc
Confidence            345577 99999999999999752    2   357886  7764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.98  E-value=0.00023  Score=41.01  Aligned_cols=33  Identities=27%  Similarity=0.650  Sum_probs=24.6

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ...+.|||.||.+|+.+|++.+         ..||.  |+..+.
T Consensus        31 ~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~--Cr~~~~   63 (74)
T 2ep4_A           31 LGICPCKHAFHRKCLIKWLEVR---------KVCPL--CNMPVL   63 (74)
T ss_dssp             EEEETTTEEEEHHHHHHHHHHC---------SBCTT--TCCBCS
T ss_pred             EEEcCCCCEecHHHHHHHHHcC---------CcCCC--cCcccc
Confidence            4456899999999999998642         26875  776554

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=96.95  E-value=0.00038  Score=46.02  Aligned_cols=37  Identities=22%  Similarity=0.528  Sum_probs=29.0

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      +-+.+.|||.||..|+..++..     +   ...||.  |...+...
T Consensus        90 ~pv~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~  126 (150)
T 1z6u_A           90 QPVTTECFHNVCKDCLQRSFKA-----Q---VFSCPA--CRHDLGQN  126 (150)
T ss_dssp             SEEECTTSCEEEHHHHHHHHHT-----T---CCBCTT--TCCBCCTT
T ss_pred             CCEEcCCCCchhHHHHHHHHHh-----C---CCcCCC--CCccCCCC
Confidence            3455899999999999999973     1   357986  88877765

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=96.89  E-value=0.0011  Score=39.79  Aligned_cols=39  Identities=8%  Similarity=-0.119  Sum_probs=28.4

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      .+-+.++|||.||+.|+..|+..    .     .+||.  |+..++.+.+
T Consensus        25 ~dPV~~~cGhtf~r~~I~~~l~~----~-----~~cP~--~~~~l~~~~l   63 (85)
T 2kr4_A           25 TDPVRLPSGTVMDRSIILRHLLN----S-----PTDPF--NRQMLTESML   63 (85)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHHH----C-----SBCTT--TCCBCCGGGC
T ss_pred             cCCeECCCCCEECHHHHHHHHhc----C-----CCCCC--CcCCCChHhc
Confidence            45566889999999999999973    1     35776  6666665543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=96.83  E-value=0.0005  Score=41.16  Aligned_cols=35  Identities=17%  Similarity=0.470  Sum_probs=26.5

Q ss_pred             CcccCC-CCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602           5 LMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV   48 (95)
Q Consensus         5 ~~~~l~-CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i   48 (95)
                      +-+.+. |||.||..|+..++..    .+   ...||.  |+..+
T Consensus        25 ~p~~~~~CgH~fC~~Ci~~~~~~----~~---~~~CP~--Cr~~~   60 (92)
T 3ztg_A           25 DAVVIPCCGNSYCDECIRTALLE----SD---EHTCPT--CHQND   60 (92)
T ss_dssp             SCEECTTTCCEECHHHHHHHHHH----CT---TCCCTT--TCCSS
T ss_pred             CceECCCCCCHHHHHHHHHHHHh----cC---CCcCcC--CCCcC
Confidence            345677 9999999999999873    22   268986  88765

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.73  E-value=0.00017  Score=45.39  Aligned_cols=34  Identities=24%  Similarity=0.530  Sum_probs=25.6

Q ss_pred             CcccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           5 LMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         5 ~~~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      +-+.+ .|||.||..|+..++.           ..||.  |+..+...
T Consensus        34 ~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~--Cr~~~~~~   68 (117)
T 1jm7_B           34 EPVCLGGCEHIFCSNCVSDCIG-----------TGCPV--CYTPAWIQ   68 (117)
T ss_dssp             SCBCCCSSSCCBCTTTGGGGTT-----------TBCSS--SCCBCSCS
T ss_pred             CccEeCCCCCHHHHHHHHHHhc-----------CCCcC--CCCcCccc
Confidence            44556 8999999999988864           46885  87766544

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=96.66  E-value=0.00099  Score=41.27  Aligned_cols=56  Identities=5%  Similarity=-0.201  Sum_probs=35.2

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR   71 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~   71 (95)
                      .+-+.++|||.||+.|+..|+..    .     .+||.  |+..++.+.+..-... +-+++.+.+.+
T Consensus        40 ~dPV~~~cGhtf~r~~I~~~l~~----~-----~~cP~--~~~~l~~~~L~pn~~L-k~~I~~~~~~~   95 (100)
T 2kre_A           40 TDPVRLPSGTIMDRSIILRHLLN----S-----PTDPF--NRQTLTESMLEPVPEL-KEQIQAWMREK   95 (100)
T ss_dssp             SSEEEETTTEEEEHHHHHHHTTS----C-----SBCSS--SCCBCCTTSSEECHHH-HHHHHHHHHTT
T ss_pred             cCCeECCCCCEEchHHHHHHHHc----C-----CCCCC--CCCCCChhhceECHHH-HHHHHHHHHHh
Confidence            44566789999999999999863    1     35775  7776665543322222 22344555555

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=96.66  E-value=0.00034  Score=45.26  Aligned_cols=35  Identities=29%  Similarity=0.764  Sum_probs=26.5

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      +.+.++|||.||.+|+..|+..         ...||.  |...+..
T Consensus        65 ~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~   99 (138)
T 4ayc_A           65 EAVTLNCAHSFCSYCINEWMKR---------KIECPI--CRKDIKS   99 (138)
T ss_dssp             SEEEETTSCEEEHHHHHHHTTT---------CSBCTT--TCCBCCC
T ss_pred             CceECCCCCCccHHHHHHHHHc---------CCcCCC--CCCcCCC
Confidence            4566899999999999998642         235986  8877654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=96.63  E-value=0.00053  Score=38.74  Aligned_cols=33  Identities=27%  Similarity=0.776  Sum_probs=25.0

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ...++|||.||.+|+..|++.+         ..||.  |+..+.
T Consensus        19 ~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~   51 (68)
T 1chc_A           19 SMALPCLHAFCYVCITRWIRQN---------PTCPL--CKVPVE   51 (68)
T ss_dssp             EEETTTTEEESTTHHHHHHHHS---------CSTTT--TCCCCC
T ss_pred             cEecCCCCeeHHHHHHHHHhCc---------CcCcC--CChhhH
Confidence            3568999999999999998531         36875  776554

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=96.54  E-value=0.00072  Score=42.41  Aligned_cols=37  Identities=27%  Similarity=0.682  Sum_probs=29.0

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      ..++|||.||.+|+..++..         .-.||.  |+..++.+.+.
T Consensus        93 ~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~~  129 (133)
T 4ap4_A           93 VSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKINHKRYH  129 (133)
T ss_dssp             EEETTSBEEEHHHHHHHHHH---------CSBCTT--TCCBCCGGGEE
T ss_pred             EeCCCCChhhHHHHHHHHHc---------CCCCCC--CCCcCChhcce
Confidence            55789999999999999863         137885  88888776654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=96.46  E-value=0.00045  Score=37.43  Aligned_cols=32  Identities=28%  Similarity=0.628  Sum_probs=23.0

Q ss_pred             cccCC-CCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602           6 MTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV   48 (95)
Q Consensus         6 ~~~l~-CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i   48 (95)
                      ...+. |||.||.+|+.+|++.         ...||.  |+..+
T Consensus        21 ~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~--Cr~~~   53 (55)
T 1iym_A           21 ARFLPRCGHGFHAECVDMWLGS---------HSTCPL--CRLTV   53 (55)
T ss_dssp             CEECSSSCCEECTTHHHHTTTT---------CCSCSS--SCCCS
T ss_pred             eEECCCCCCcccHHHHHHHHHc---------CCcCcC--CCCEe
Confidence            45565 9999999999999743         135775  66544

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=96.31  E-value=0.003  Score=38.88  Aligned_cols=56  Identities=7%  Similarity=-0.215  Sum_probs=35.4

Q ss_pred             CCcccCCCC-chhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602           4 TLMTGLECS-HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR   71 (95)
Q Consensus         4 ~~~~~l~Cg-H~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~   71 (95)
                      .+-+.++|| |.||+.|+..|+..    .     -+||.  |+..++.+.+...... +-+++.+.+.+
T Consensus        33 ~dPV~~~cG~htf~r~cI~~~l~~----~-----~~cP~--~~~~l~~~~L~pn~~L-k~~I~~~~~~~   89 (98)
T 1wgm_A           33 CDPVVLPSSRVTVDRSTIARHLLS----D-----QTDPF--NRSPLTMDQIRPNTEL-KEKIQRWLAER   89 (98)
T ss_dssp             SSEEECTTTCCEEEHHHHHHHTTT----S-----CBCTT--TCSBCCTTTSEECHHH-HHHHHHHHHHS
T ss_pred             cCCeECCCCCeEECHHHHHHHHHh----C-----CCCCC--CCCCCChhhceEcHHH-HHHHHHHHHHc
Confidence            455668999 99999999999874    1     25876  7777766544322222 22334455554

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.28  E-value=0.00034  Score=38.69  Aligned_cols=31  Identities=23%  Similarity=0.544  Sum_probs=22.2

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      +...++|||.||..|+..            ....||.  |+..+.
T Consensus        18 ~p~~l~CgH~fC~~Ci~~------------~~~~CP~--Cr~~~~   48 (56)
T 1bor_A           18 CPKLLPCLHTLCSGCLEA------------SGMQCPI--CQAPWP   48 (56)
T ss_dssp             CCSCSTTSCCSBTTTCSS------------SSSSCSS--CCSSSS
T ss_pred             CeEEcCCCCcccHHHHcc------------CCCCCCc--CCcEee
Confidence            345689999999999754            1467886  776554

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.16  E-value=0.00058  Score=38.84  Aligned_cols=33  Identities=24%  Similarity=0.690  Sum_probs=24.2

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      ..++|||.||.+|+..++..         ...||.  |+..+..
T Consensus        28 ~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~   60 (70)
T 2ecn_A           28 LILPCAHSFCQKCIDKWSDR---------HRNCPI--CRLQMTG   60 (70)
T ss_dssp             EEETTTEEECHHHHHHSSCC---------CSSCHH--HHHCTTC
T ss_pred             cccCCCCcccHHHHHHHHHC---------cCcCCC--cCCcccC
Confidence            56789999999999988651         346774  7665543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.98  E-value=0.0031  Score=44.02  Aligned_cols=57  Identities=7%  Similarity=-0.148  Sum_probs=36.5

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR   71 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~   71 (95)
                      .+-+.++|||.||+.|+..|+..    ++.    .||.  |+..++.+.+..-.. -+-+++.|++.+
T Consensus       219 ~dPv~~~~gh~f~~~~i~~~~~~----~~~----~cP~--~~~~~~~~~l~~n~~-l~~~i~~~~~~~  275 (281)
T 2c2l_A          219 REPCITPSGITYDRKDIEEHLQR----VGH----FNPV--TRSPLTQEQLIPNLA-MKEVIDAFISEN  275 (281)
T ss_dssp             SSEEECSSCCEEETTHHHHHHHH----TCS----SCTT--TCCCCCGGGCEECHH-HHHHHHHHHTTC
T ss_pred             cCCeECCCCCEECHHHHHHHHHH----CCC----CCcC--CCCCCchhcCcccHH-HHHHHHHHHHHC
Confidence            45566889999999999999964    222    2886  888777654332122 223345666665

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.94  E-value=0.0019  Score=38.13  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=24.7

Q ss_pred             CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602          10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK   52 (95)
Q Consensus        10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~   52 (95)
                      .|||.|+.+|+.+++..+         -.||.  |+..+....
T Consensus        47 ~C~H~FH~~Ci~~Wl~~~---------~~CP~--CR~~~~~~~   78 (81)
T 2ecl_A           47 ECNHSFHNCCMSLWVKQN---------NRCPL--CQQDWVVQR   78 (81)
T ss_dssp             TTSCEEEHHHHHHHTTTC---------CBCTT--TCCBCCEEE
T ss_pred             CCCCccChHHHHHHHHhC---------CCCCC--cCCCcchhh
Confidence            599999999999998642         26886  887766544

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=95.90  E-value=0.00066  Score=42.33  Aligned_cols=36  Identities=22%  Similarity=0.630  Sum_probs=26.5

Q ss_pred             CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      +.+.+.|||.||..|+..++..     +   ...||.  |+..+..
T Consensus        27 ~p~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~   62 (115)
T 3l11_A           27 EPVTLPCNHTLCKPCFQSTVEK-----A---SLCCPF--CRRRVSS   62 (115)
T ss_dssp             SCEECTTSCEECHHHHCCCCCT-----T---TSBCTT--TCCBCHH
T ss_pred             ceeEcCCCCHHhHHHHHHHHhH-----C---cCCCCC--CCcccCc
Confidence            3456799999999999887742     2   267985  8877653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=95.87  E-value=0.0016  Score=37.82  Aligned_cols=32  Identities=22%  Similarity=0.472  Sum_probs=22.7

Q ss_pred             CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      .+...++|||. ||.+|+..+             ..||.  |+..+..
T Consensus        35 ~~~~~~pCgH~~~C~~C~~~~-------------~~CP~--Cr~~i~~   67 (74)
T 4ic3_A           35 IAIVFVPCGHLVTCKQCAEAV-------------DKCPM--CYTVITF   67 (74)
T ss_dssp             CCEEEETTCCBCCCHHHHTTC-------------SBCTT--TCCBCSE
T ss_pred             CCEEEcCCCChhHHHHhhhcC-------------ccCCC--cCcCccC
Confidence            34566799999 999997643             46765  7665543

>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4

Probab=95.60  E-value=0.0001  Score=44.66  Aligned_cols=26  Identities=8%  Similarity=0.010  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCcc
Q psy7602          57 DVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFIL   93 (95)
Q Consensus        57 ~ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~   93 (95)
                      ++|++++++++|+.++         +++|||  +|+.
T Consensus         8 e~y~~~l~e~~v~~~~---------~~~wCP--~C~~   33 (86)
T 2ct7_A            8 ALFHKKLTEGVLMRDP---------KFLWCA--QCSF   33 (86)
T ss_dssp             CSSSSCCCCSCCCSCC---------CEECCS--SSCC
T ss_pred             HHHHHHHHHHHHhcCC---------CEeECc--CCCc
Confidence            5788888999998884         999999  8975

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=95.58  E-value=0.0044  Score=40.86  Aligned_cols=31  Identities=35%  Similarity=0.829  Sum_probs=24.6

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      +.|||.||..|+..++..     +   ...||.  |+..+.
T Consensus        71 ~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~  101 (165)
T 2ckl_B           71 KECLHRFCADCIITALRS-----G---NKECPT--CRKKLV  101 (165)
T ss_dssp             TTTCCEEEHHHHHHHHHT-----T---CCBCTT--TCCBCC
T ss_pred             CCCCChhHHHHHHHHHHh-----C---cCCCCC--CCCcCC
Confidence            499999999999999863     2   356886  887764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=95.34  E-value=0.006  Score=46.30  Aligned_cols=39  Identities=18%  Similarity=0.461  Sum_probs=28.8

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK   52 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~   52 (95)
                      .+...++|||.||..|...++..     +   ...||.  |+..+....
T Consensus       343 ~~pv~lpCGH~FC~~Ci~~wl~~-----~---~~~CP~--CR~~i~~~~  381 (389)
T 2y1n_A          343 KDVKIEPCGHLMCTSCLTSWQES-----E---GQGCPF--CRCEIKGTE  381 (389)
T ss_dssp             CCEEEETTCCEECHHHHHHHHHH-----T---CSBCTT--TCCBCCEEE
T ss_pred             CCeEEeCCCChhhHHHHHHHHhc-----C---CCCCCC--CCCccCCce
Confidence            34556899999999999999873     1   246885  887766544

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=95.18  E-value=0.014  Score=39.91  Aligned_cols=58  Identities=7%  Similarity=-0.157  Sum_probs=37.0

Q ss_pred             CCCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602           3 STLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR   71 (95)
Q Consensus         3 ~~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~   71 (95)
                      +.+-+.++|||.||+.|+..|+..    +|.    .||.  |+..++.+.+..-.. .+-+++.+...|
T Consensus       116 m~DPV~~~~Ghtfer~~I~~~l~~----~~~----tcP~--t~~~l~~~~L~pN~~-Lk~~Ie~~~~~~  173 (179)
T 2f42_A          116 MREPCITPSGITYDRKDIEEHLQR----VGH----FDPV--TRSPLTQDQLIPNLA-MKEVIDAFIQEN  173 (179)
T ss_dssp             CSSEEECTTSCEEEHHHHHHHHHH----TCS----BCTT--TCCBCCGGGCEECHH-HHHHHHHHHHHC
T ss_pred             CCCCeECCCCCEECHHHHHHHHHh----CCC----CCCC--CcCCCChhhCcchHH-HHHHHHHHHHHC
Confidence            345566799999999999999975    232    5886  777776654432222 223344555555

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.01  E-value=0.012  Score=34.01  Aligned_cols=32  Identities=22%  Similarity=0.483  Sum_probs=23.1

Q ss_pred             CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      .+...++|||. ||.+|+..             ...||.  |+..+..
T Consensus        36 ~~~~~~pCgH~~~C~~C~~~-------------~~~CP~--Cr~~i~~   68 (75)
T 2ecg_A           36 IAIVFVPCGHLVTCKQCAEA-------------VDKCPM--CYTVITF   68 (75)
T ss_dssp             CCBCCSSSCCCCBCHHHHHH-------------CSBCTT--TCCBCCC
T ss_pred             CCEEEecCCCHHHHHHHhhC-------------CCCCcc--CCceecC
Confidence            45566899999 99999842             146875  7776654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=93.17  E-value=0.023  Score=35.49  Aligned_cols=32  Identities=25%  Similarity=0.395  Sum_probs=23.9

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ..+.|+|.|+..|+..+|..         .-.||.  |+..+.
T Consensus        69 ~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~--Cr~~~~  100 (106)
T 3dpl_R           69 AWGVCNHAFHFHCISRWLKT---------RQVCPL--DNREWE  100 (106)
T ss_dssp             EEETTSCEEEHHHHHHHHTT---------CSBCSS--SCSBCC
T ss_pred             eecccCcEECHHHHHHHHHc---------CCcCcC--CCCcce
Confidence            44789999999999999864         135774  766544

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=91.93  E-value=0.047  Score=32.02  Aligned_cols=32  Identities=25%  Similarity=0.566  Sum_probs=22.7

Q ss_pred             CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      .+...++|||. ||.+|...+             ..||.  |+..+..
T Consensus        29 ~~~v~~pCgH~~~C~~C~~~~-------------~~CP~--Cr~~i~~   61 (79)
T 2yho_A           29 INSTFCPCGHTVCCESCAAQL-------------QSCPV--CRSRVEH   61 (79)
T ss_dssp             CCEEEETTCBCCBCHHHHTTC-------------SBCTT--TCCBCCE
T ss_pred             CcEEEECCCCHHHHHHHHHhc-------------CcCCC--CCchhhC
Confidence            34566899999 999998632             27775  7766554

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.57  E-value=0.051  Score=30.99  Aligned_cols=18  Identities=28%  Similarity=0.571  Sum_probs=15.3

Q ss_pred             CCcccCCCCch-hhHHHHH
Q psy7602           4 TLMTGLECSHR-FCTQCWC   21 (95)
Q Consensus         4 ~~~~~l~CgH~-FC~~C~~   21 (95)
                      .+...++|||. ||.+|..
T Consensus        26 ~~~v~~pCgH~~~C~~C~~   44 (68)
T 2ea5_A           26 VNWVLLPCRHTCLCDGCVK   44 (68)
T ss_dssp             CCCEETTTTBCCSCTTHHH
T ss_pred             CCEEEECCCChhhhHHHHh
Confidence            35666899999 9999987

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=91.30  E-value=0.054  Score=30.42  Aligned_cols=29  Identities=17%  Similarity=0.439  Sum_probs=21.5

Q ss_pred             CCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602          10 ECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus        10 ~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      +|||. ||.+|...+.+.     +    -.||.  |+..|.
T Consensus        27 pCgH~~~C~~C~~~~~~~-----~----~~CPi--CR~~i~   56 (64)
T 2vje_A           27 KTGHLMACFTCAKKLKKR-----N----KPCPV--CRQPIQ   56 (64)
T ss_dssp             TEEEEEECHHHHHHHHHT-----T----CCCTT--TCCCCC
T ss_pred             CCCChhhHHHHHHHHHHc-----C----CcCCC--cCcchh
Confidence            99999 899999987642     1    25775  777664

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=89.46  E-value=0.092  Score=29.31  Aligned_cols=30  Identities=20%  Similarity=0.468  Sum_probs=21.7

Q ss_pred             CCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           9 LECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         9 l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ++|||. ||.+|...+.+.     +    -+||.  |+..|.
T Consensus        25 ~pCgH~~~C~~C~~~~~~~-----~----~~CPi--CR~~i~   55 (63)
T 2vje_B           25 GRTGHLVTCFHCARRLKKA-----G----ASCPI--CKKEIQ   55 (63)
T ss_dssp             TTEEEEEECHHHHHHHHHT-----T----CBCTT--TCCBCC
T ss_pred             cCCCCHhHHHHHHHHHHHh-----C----CcCCC--cCchhh
Confidence            399998 999999876532     1    36875  777664

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=89.42  E-value=0.2  Score=30.40  Aligned_cols=30  Identities=30%  Similarity=0.697  Sum_probs=24.2

Q ss_pred             CchhhHHHHHHHHHhhhhcCCceeeeecCcc-ccC
Q psy7602          12 SHRFCTQCWCEYLTTKIIQEGMGQTIACAAH-GCN   45 (95)
Q Consensus        12 gH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~-~C~   45 (95)
                      .|+||--|-+.||+.+-. ++   .+.||.. +|.
T Consensus        38 ~HkFCFpCsr~sIk~q~~-~~---EvyCPSG~kCp   68 (93)
T 2cs3_A           38 SHKFCFPCSRESIKAQGA-TG---EVYCPSGEKCP   68 (93)
T ss_dssp             SCEECHHHHHHHHHHHHS-SS---CCCCTTSSCCB
T ss_pred             CCeeeccccHHHHHhcCC-CC---cEECCCCCccc
Confidence            699999999999999865 33   5899986 464

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=89.40  E-value=0.068  Score=33.99  Aligned_cols=18  Identities=33%  Similarity=0.687  Sum_probs=0.0

Q ss_pred             CCCCchhhHHHHHHHHHh
Q psy7602           9 LECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~   26 (95)
                      +.|+|.|+..|+..+|..
T Consensus        82 ~~C~H~FH~~CI~~Wl~~   99 (117)
T 4a0k_B           82 GVCNHAFHFHCISRWLKT   99 (117)
T ss_dssp             ------------------
T ss_pred             CCcCceEcHHHHHHHHHc
Confidence            589999999999999876

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=88.35  E-value=0.22  Score=27.81  Aligned_cols=23  Identities=9%  Similarity=-0.032  Sum_probs=19.0

Q ss_pred             CCcccC-CCCchhhHHHHHHHHHh
Q psy7602           4 TLMTGL-ECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         4 ~~~~~l-~CgH~FC~~C~~~yl~~   26 (95)
                      ++-+.+ .+||.|+++++..||..
T Consensus        14 ~dPV~~~~sG~~yer~~I~~~l~~   37 (61)
T 2bay_A           14 RRPVLSPKSRTIFEKSLLEQYVKD   37 (61)
T ss_dssp             SSEEEETTTTEEEEHHHHHHHHHH
T ss_pred             CCCEEeCCCCcEEcHHHHHHHHHh
Confidence            344556 89999999999999974

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=87.51  E-value=0.2  Score=31.31  Aligned_cols=18  Identities=28%  Similarity=0.641  Sum_probs=15.7

Q ss_pred             CCCCchhhHHHHHHHHHh
Q psy7602           9 LECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~   26 (95)
                      ++|+|.||.+|...|-..
T Consensus        18 IPCkHvFCydCa~~~~~~   35 (101)
T 3vk6_A           18 IPCKHVFCYDCAILHEKK   35 (101)
T ss_dssp             ETTCCEEEHHHHHHHHHT
T ss_pred             ccccccHHHHHHHHHHhc
Confidence            589999999999988654

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=86.83  E-value=0.068  Score=39.71  Aligned_cols=32  Identities=19%  Similarity=0.548  Sum_probs=23.2

Q ss_pred             CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      .+...++|||. ||..|+..+             ..||.  |+..+..
T Consensus       306 ~~~v~lpCgH~~fC~~C~~~~-------------~~CP~--CR~~i~~  338 (345)
T 3t6p_A          306 VSVVFIPCGHLVVCQECAPSL-------------RKCPI--CRGIIKG  338 (345)
T ss_dssp             CCEEEETTCCEEECTTTGGGC-------------SBCTT--TCCBCCE
T ss_pred             CceEEcCCCChhHhHHHHhcC-------------CcCCC--CCCCccC
Confidence            34566899999 999997633             46875  7776654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=80.69  E-value=0.55  Score=28.03  Aligned_cols=14  Identities=21%  Similarity=0.892  Sum_probs=13.4

Q ss_pred             CCCCchhhHHHHHH
Q psy7602           9 LECSHRFCTQCWCE   22 (95)
Q Consensus         9 l~CgH~FC~~C~~~   22 (95)
                      +.|+|.||..|++.
T Consensus        22 ~~C~~~~C~~Cl~~   35 (101)
T 2jun_A           22 VTCEVSYCDECLKA   35 (101)
T ss_dssp             TTTTEEECHHHHHH
T ss_pred             CcCChHHhHHHCHH
Confidence            88999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	95
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-04

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGC 44
             + T  +C   FCT C  +Y+    I+EG+   I+C    C
Sbjct: 17 VEQMTTIAQCQCIFCTLCLKQYVELL-IKEGLETAISCPDAAC 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	95
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	99.63
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.96
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.88
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.65
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	97.54
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.53
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.35
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.93
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	96.83
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.81
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	96.74
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	95.66
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	95.58
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	95.21
d2ct7a1	73	Ring finger protein 31 {Human (Homo sapiens) [TaxI	93.98
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	92.16
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	91.78
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	86.58

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.4e-17  Score=100.90  Aligned_cols=66  Identities=24%  Similarity=0.496  Sum_probs=53.4

Q ss_pred             CCCCccc-CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCc--ccccchhhhH------HHHHHHHHHHHH
Q psy7602           2 PSTLMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI--LVDDGKPIEF------DVYQGILSNQVT   68 (95)
Q Consensus         2 ~~~~~~~-l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~--~i~~~~i~~l------~ky~~~l~~~~v   68 (95)
                      |.++++. +.|||.||.+||++|++++|+ +|...+|+||..+|..  .+++.+|+.+      +||+++.+++.+
T Consensus        16 ~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~-~~~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~~~l~~~~   90 (94)
T d1wima_          16 PVEQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFERSG   90 (94)
T ss_dssp             BGGGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHHHHHHHSSC
T ss_pred             cCCceEEECCCCCEeCCcCHHHHHHHHHh-cCCccccCCcCCCCCCCcccCHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence            3455555 479999999999999999998 6766789999999965  5788888877      888888776544

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=2.3e-06  Score=50.99  Aligned_cols=49  Identities=20%  Similarity=0.356  Sum_probs=35.0

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH-HHHHHH
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF-DVYQGI   62 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l-~ky~~~   62 (95)
                      .+...++|||.||..|+.+|++.+    +    -+||.  |+..+...++..- +.|...
T Consensus        34 ~~pv~~~CgH~FC~~Ci~~~~~~~----~----~~CP~--Cr~p~~~~~l~~P~~~~l~~   83 (86)
T d1rmda2          34 ADPVETSCKHLFCRICILRCLKVM----G----SYCPS--CRYPCFPTDLESPVKSFLNI   83 (86)
T ss_dssp             SSEEECTTSCEEEHHHHHHHHHHT----C----SBCTT--TCCBCCGGGCBCCCHHHHHH
T ss_pred             hcceecCCCChhhHHHHHHHHhhC----C----CcCcc--cCCCCChhhccCHHHHHHHH
Confidence            455678999999999999998642    2    25986  8888887766543 444433

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=5.4e-06  Score=50.17  Aligned_cols=42  Identities=24%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      .+-+.++|||.||..|+.+|+..+-   +   ...||.  |+..+..+.+
T Consensus        32 ~~pv~~~CgH~fC~~Ci~~~~~~~~---~---~~~CP~--Cr~~~~~~~l   73 (103)
T d1jm7a_          32 KEPVSTKCDHIFCKFCMLKLLNQKK---G---PSQCPL--CKNDITKRSL   73 (103)
T ss_dssp             SSCCBCTTSCCCCSHHHHHHHHSSS---S---SCCCTT--TSCCCCTTTC
T ss_pred             CCeEEcCCCCchhhHHHHHHHHHCC---C---CCcCcC--CCCcCChhhC
Confidence            3455689999999999999986532   1   257996  9887766554

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.3e-05  Score=44.93  Aligned_cols=38  Identities=16%  Similarity=0.384  Sum_probs=28.1

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      +..+.|||.||.+|+.+|++..     .   -+||.  |+..|....+
T Consensus        21 ~~~~~C~H~fc~~Ci~~~~~~~-----~---~~CP~--CR~~i~~~~~   58 (65)
T d1g25a_          21 LMVNVCGHTLCESCVDLLFVRG-----A---GNCPE--CGTPLRKSNF   58 (65)
T ss_dssp             EEECTTCCCEEHHHHHHHHHTT-----S---SSCTT--TCCCCSSCCC
T ss_pred             EEeCccChHhhHHHHHHHhCcC-----c---CCCCC--CCcCcccccc
Confidence            3456899999999999999632     1   14885  9888766543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=2.9e-05  Score=44.80  Aligned_cols=58  Identities=7%  Similarity=-0.125  Sum_probs=38.0

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhCC
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRL   72 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~~   72 (95)
                      .+-+.++|||.||++|+.+|+..    ++    -.||.  |+..++.+++.. +.--+-+++.|++.|+
T Consensus        18 ~dPv~~~cGhtfc~~ci~~~l~~----~~----~~cP~--c~~~l~~~~l~p-N~~L~~~I~~~l~~~~   75 (80)
T d2c2la2          18 REPCITPSGITYDRKDIEEHLQR----VG----HFNPV--TRSPLTQEQLIP-NLAMKEVIDAFISENG   75 (80)
T ss_dssp             SSEEECSSCCEEETTHHHHHHHH----TC----SSCTT--TCCCCCGGGCEE-CHHHHHHHHHHHTTCS
T ss_pred             hhhcccCCcCeecHHHHHHHHhc----CC----ccCCC--cccccccccccc-HHHHHHHHHHHHHHCC
Confidence            34456899999999999999854    12    24775  677676654432 2223445667787774

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=3e-05  Score=47.30  Aligned_cols=37  Identities=22%  Similarity=0.568  Sum_probs=29.2

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD   50 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~   50 (95)
                      .+.|||.||.+|+..|++.+-. +|   .++||.  |+.++..
T Consensus        58 ~~~CgH~FH~~Ci~~Wl~~~~~-~~---~~~CP~--CR~~~~~   94 (114)
T d1v87a_          58 LTKCSHAFHLLCLLAMYCNGNK-DG---SLQCPS--CKTIYGE   94 (114)
T ss_dssp             ESSSCCEECHHHHHHHHHHTCC-SS---CCBCTT--TCCBSSS
T ss_pred             ECCCCChhhHHHHHHHHHhcCc-CC---CCcccc--ccchhcc
Confidence            4689999999999999987653 33   478996  8876644

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=3.9e-05  Score=41.08  Aligned_cols=35  Identities=23%  Similarity=0.539  Sum_probs=25.9

Q ss_pred             ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      ..++|||.||.+|+.++++.     +   ..+||.  |+..++++
T Consensus        18 ~~~~CgH~~c~~C~~~w~~~-----~---~~~CP~--CR~~~~~d   52 (52)
T d1ur6b_          18 FPCTCGYQICRFCWHRIRTD-----E---NGLCPA--CRKPYPED   52 (52)
T ss_dssp             CSSSSSCCCCHHHHHHHTTT-----S---CCBCTT--TCCBCSCC
T ss_pred             EecCCCCccchHHHHHHHhh-----c---CCCCCc--cCCcCCCC
Confidence            44689999999999998643     1   236986  88777653

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=7.4e-05  Score=43.18  Aligned_cols=39  Identities=18%  Similarity=0.449  Sum_probs=28.7

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK   52 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~   52 (95)
                      .+...++|||.||.+|+..+++.+-        -+||.  |+..|....
T Consensus        34 ~~~~~~~CgH~fC~~Ci~~wl~~~~--------~~CP~--Cr~~i~~~~   72 (79)
T d1fbva4          34 KDVKIEPCGHLMCTSCLTSWQESEG--------QGCPF--CRCEIKGTE   72 (79)
T ss_dssp             CCEECSSSCCEECHHHHHHHHHTTC--------CSCTT--TCCCCCCCC
T ss_pred             CCeEEeCCCCeeeHHHHHHHHHHCc--------CcCCC--CCcCccCCc
Confidence            4556789999999999999986421        24886  887776543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.93  E-value=0.00011  Score=42.00  Aligned_cols=40  Identities=5%  Similarity=-0.002  Sum_probs=27.5

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP   53 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i   53 (95)
                      .+-+.+.|||.||++|+.+|++..    +    -.||.  |+..++.+++
T Consensus        19 ~dPV~~~cgh~fc~~ci~~~~~~~----~----~~cP~--~~~~l~~~~l   58 (78)
T d1t1ha_          19 KDPVIVSTGQTYERSSIQKWLDAG----H----KTCPK--SQETLLHAGL   58 (78)
T ss_dssp             SSEEEETTTEEEEHHHHHHHHTTT----C----CBCTT--TCCBCSSCCC
T ss_pred             hCceEccCCCcchHHHHHHHHHHC----C----CCCCc--ccccCCcccc
Confidence            344567999999999999998642    1    24664  6556655543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=96.83  E-value=0.00015  Score=40.57  Aligned_cols=33  Identities=27%  Similarity=0.776  Sum_probs=25.3

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      ...++|||.||..|+.+|++.+         -+||.  |+..|.
T Consensus        19 ~~~~~C~H~Fc~~Ci~~w~~~~---------~~CP~--CR~~i~   51 (68)
T d1chca_          19 SMALPCLHAFCYVCITRWIRQN---------PTCPL--CKVPVE   51 (68)
T ss_dssp             EEETTTTEEESTTHHHHHHHHS---------CSTTT--TCCCCC
T ss_pred             cEEeCCCCcCcHHHHHHHHHhC---------CcCCC--CCcchH
Confidence            3457999999999999998631         25886  877654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00023  Score=38.38  Aligned_cols=36  Identities=11%  Similarity=0.069  Sum_probs=28.0

Q ss_pred             cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602           8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI   54 (95)
Q Consensus         8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~   54 (95)
                      ...|||.||++|+.+|++.    ++     +||.  |+..++.+++.
T Consensus        16 ~~~cGh~fc~~cI~~~l~~----~~-----~CP~--c~~~l~~~dLi   51 (56)
T d2baya1          16 SPKSRTIFEKSLLEQYVKD----TG-----NDPI--TNEPLSIEEIV   51 (56)
T ss_dssp             ETTTTEEEEHHHHHHHHHH----HS-----BCTT--TCCBCCGGGCE
T ss_pred             cCCCCCcccHHHHHHHHhh----cc-----CCCc--cCCcCCHHhce
Confidence            3479999999999999985    12     3776  88888777654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=6.9e-05  Score=44.58  Aligned_cols=31  Identities=26%  Similarity=0.607  Sum_probs=22.8

Q ss_pred             CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602           9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK   52 (95)
Q Consensus         9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~   52 (95)
                      ..|||.||.+|+.+|+..           +||.  |+..+....
T Consensus        39 ~~CgH~fC~~Ci~~~~~~-----------~CP~--Cr~~~~~~~   69 (97)
T d1jm7b_          39 GGCEHIFCSNCVSDCIGT-----------GCPV--CYTPAWIQD   69 (97)
T ss_dssp             CSSSCCBCTTTGGGGTTT-----------BCSS--SCCBCSCSS
T ss_pred             CCCCCchhHHHHHHHHhc-----------cccc--cCCcCchhh
Confidence            479999999999877521           3886  887665544

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.66  E-value=0.00087  Score=36.00  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=17.5

Q ss_pred             CcccC-CCCchhhHHHHHHHHHh
Q psy7602           5 LMTGL-ECSHRFCTQCWCEYLTT   26 (95)
Q Consensus         5 ~~~~l-~CgH~FC~~C~~~yl~~   26 (95)
                      ....+ .|||.|+.+|+..+++.
T Consensus        20 ~~~~l~~C~H~Fh~~Ci~~Wl~~   42 (55)
T d1iyma_          20 EARFLPRCGHGFHAECVDMWLGS   42 (55)
T ss_dssp             CCEECSSSCCEECTTHHHHTTTT
T ss_pred             EEEEeCCCCCcccHHHHHHHHHh
Confidence            34445 69999999999999853

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0014  Score=38.10  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=24.4

Q ss_pred             cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602           6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus         6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      +..+.|||.|+.+|+..+|+.+         -.||.  |+....
T Consensus        52 ~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~--CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAFHFHCISRWLKTR---------QVCPL--DNREWE   84 (88)
T ss_dssp             EEEETTSCEEEHHHHHHHHTTC---------SBCSS--SCSBCC
T ss_pred             eEEccccCcccHHHHHHHHHHC---------CcCCC--CCCccc
Confidence            3456899999999999998641         14875  776544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0011  Score=35.88  Aligned_cols=34  Identities=24%  Similarity=0.524  Sum_probs=23.9

Q ss_pred             CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602           4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG   51 (95)
Q Consensus         4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~   51 (95)
                      .+...++|||.||..|++         ..   ..+||.  |+..++.+
T Consensus        17 ~~p~~lpCgH~fC~~Ci~---------~~---~~~CP~--Cr~~~~~~   50 (56)
T d1bora_          17 KCPKLLPCLHTLCSGCLE---------AS---GMQCPI--CQAPWPLG   50 (56)
T ss_dssp             BCCSCSTTSCCSBTTTCS---------SS---SSSCSS--CCSSSSCC
T ss_pred             CCCEEecCCCHHhHHHHH---------cC---CCcCcC--CCCcccCC
Confidence            345668999999999963         11   357985  88766543

>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: IBR domain
domain: Ring finger protein 31
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.00022  Score=40.59  Aligned_cols=25  Identities=8%  Similarity=0.050  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCcc
Q psy7602          58 VYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFIL   93 (95)
Q Consensus        58 ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~   93 (95)
                      +|+++|.+++|+.+         ++++|||  +|++
T Consensus         2 ~Y~~~l~~~~l~~~---------~~~k~CP--~C~~   26 (73)
T d2ct7a1           2 LFHKKLTEGVLMRD---------PKFLWCA--QCSF   26 (73)
T ss_dssp             SSSSCCCCSCCCSC---------CCEECCS--SSCC
T ss_pred             hHHHHHHHHHHHHC---------CCCCCCC--CCCC
Confidence            57778888888888         4999997  5764

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=92.16  E-value=0.03  Score=29.72  Aligned_cols=31  Identities=19%  Similarity=0.461  Sum_probs=22.9

Q ss_pred             CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602          10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD   49 (95)
Q Consensus        10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~   49 (95)
                      +|+|.|+.+|+++|+..+-       ..+||.  |+..+.
T Consensus        28 ~c~h~~H~~Cl~~W~~~~~-------~~~CP~--Cr~~~~   58 (60)
T d1vyxa_          28 GELENVHRSCLSTWLTISR-------NTACQI--CGVVYN   58 (60)
T ss_dssp             SGGGSCCHHHHHHHHHHHT-------CSBCTT--TCCBCC
T ss_pred             CCCCEEcHHHHHHHHhhCC-------CCCCcc--cCCeee
Confidence            4579999999999997642       136886  766543

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.78  E-value=0.044  Score=31.04  Aligned_cols=30  Identities=30%  Similarity=0.697  Sum_probs=24.6

Q ss_pred             CchhhHHHHHHHHHhhhhcCCceeeeecCcc-ccC
Q psy7602          12 SHRFCTQCWCEYLTTKIIQEGMGQTIACAAH-GCN   45 (95)
Q Consensus        12 gH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~-~C~   45 (95)
                      +|+||-.|-+.||+.+-. ++   .+.||.. +|.
T Consensus        31 ~HkFCFpCsr~sik~q~~-~~---evyCPSG~kCp   61 (80)
T d2cs3a1          31 SHKFCFPCSRESIKAQGA-TG---EVYCPSGEKCP   61 (80)
T ss_dssp             SCEECHHHHHHHHHHHHS-SS---CCCCTTSSCCB
T ss_pred             CCceeccccHHHHHhcCC-CC---cEECCCCCccc
Confidence            699999999999999885 44   4889976 464

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.58  E-value=0.096  Score=30.51  Aligned_cols=57  Identities=7%  Similarity=-0.232  Sum_probs=32.1

Q ss_pred             CCcccCCCC-chhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhCC
Q psy7602           4 TLMTGLECS-HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRL   72 (95)
Q Consensus         4 ~~~~~l~Cg-H~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~~   72 (95)
                      .+-+.+.|| |.||++|+.+|+..    ++     .||.  |+..+..+.+..- .-.+-+++.|++.++
T Consensus        33 ~dPV~~~~~~~ty~r~~I~~~l~~----~~-----~~P~--~~~~l~~~~L~pN-~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          33 CDPVVLPSSRVTVDRSTIARHLLS----DQ-----TDPF--NRSPLTMDQIRPN-TELKEKIQRWLAERK   90 (98)
T ss_dssp             SSEEECTTTCCEEEHHHHHHHTTT----SC-----BCTT--TCSBCCTTTSEEC-HHHHHHHHHHHHHST
T ss_pred             HHHHhcccccchhhHHHHHHHHHh----cC-----Cccc--ccccccchhhcch-HHHHHHHHHHHHHHH
Confidence            344556665 58999999999843    22     3665  5666665544321 111233445666553