Psyllid ID: psy760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-
Protein Sequence
MNNICKSASIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSGSFGLGSLDDS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHccccccccccccHHHHHHcccccccccccccccccccEEEcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHccccccccccEEEEccEEEEEEEEccccEEEEEEEEEccEEEEEEEccEEEEcccccccHHHHHHcccccHHHHHHcccccccccccccccccccccccEEEEEcccccccHHHHHHccHHHHHHHHHccccccccccccHHHHcccccccccccccccccEEEEEEcccHHHHHHccccccccccccEEEEEcccccEEEEEEccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccEEEEEEcccHHHHHHHHHHHccccccEEEEcccccccccEcHHHHHHHHccccccccEEcccccccHHHcccccEcccccccEEcccHHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccEEccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEEccccccccHHHHHHcHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEccEEEEEEEEEEEEEccHHHHHHHHHHHccEEcHHHHHHccccccEcccccEEEEcHHcEcEEEEEEcccEEccccccHHHHHHHHHHHHHcccccccccccccccHHHEcccHccccccccccEEEEEcHHHHHHHHHHHcccccccccEEEEccccEEEEEEEEEEccccccccccEEEEEccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MNNICKSASIFTLMSMLYTIFTLVSYLSStslsinvnEFDYAVKSYIEDGIFeqleykssnkdqdllLEYDFIivgagpggctvanrlseiphWKILLLEAGHYfnylvdipvlntnlilsplnwgyktekedcraclglkgqrcpwpsgkgvggtsLINTMLYtrgnkrnyddwaklgnygwsynevlpyfkKAERIQISelqnssyhgtqgfigvdyteyntpMLDAFLQAGMeagyplvdyngktqtgFARAQATLHKrsrrssakdyidpikkrcnltvkdssFVKKilidpvtkkaCGVLATIKGIDHKILARKEVILsagafnspkllmlsgigpqehlndlnipviknlrvGENLQEHLAMAGLTFLVNQPIGLLQDRLIKempvhfagklrhslspitnsetlsTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALAlprkfstwgkfqvsssfVVPVWFWLVQngcqmsgkwsnlywytdgfevdlsgsfglgsldds
Flexible Loop (DISEMBL)
MNNICKSASIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGlkgqrcpwpsgkgvggtsLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAqatlhkrsrrssakdyidpikkrcnltvkdssfvkkilidpvtkkacGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSgsfglgsldds
Low Complexity Region (SEG)
MNNICKSASIFTLMSMLYTIFtlvsylsstslsINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKfqvsssfvvpvwfwlvQNGCQMSGKWSNLYWYTDGFEVdlsgsfglgsldds
Disordered region (IsUnstruct)
***ICKSASIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFAR***************DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSGSFG*******
Disordered Region (DISOPRED)
********SIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGI*****************EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSGSF*LG*****
Disordered Region (DISEMBL)
MNNICKSASIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFA****************DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSGSFGLGSLDDS
Disordered Region (DISPRO)
*NNICKSASIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSG**********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNICKSASIFTLMSMLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQNGCQMSGKWSNLYWYTDGFEVDLSGSFGLGSLDDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	511	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.579	0.473	0.461	1e-68
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.583	0.476	0.458	2e-68
Q6UPE0	599	Choline dehydrogenase, mi	yes	N/A	0.590	0.504	0.407	2e-56
Q8NE62	594	Choline dehydrogenase, mi	yes	N/A	0.567	0.488	0.414	1e-55
Q8BJ64	596	Choline dehydrogenase, mi	yes	N/A	0.590	0.506	0.398	3e-55
Q1IG70	565	Choline dehydrogenase OS=	yes	N/A	0.590	0.534	0.413	4e-55
Q88CW6	565	Choline dehydrogenase OS=	yes	N/A	0.590	0.534	0.416	6e-55
Q4K4K7	567	Choline dehydrogenase OS=	yes	N/A	0.596	0.537	0.415	9e-55
B0KN19	565	Choline dehydrogenase OS=	no	N/A	0.590	0.534	0.413	2e-54
C3K3D3	567	Choline dehydrogenase OS=	yes	N/A	0.589	0.530	0.418	2e-54

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  261 bits (667), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/301 (46%), Positives = 190/301 (63%), Gaps = 5/301 (1%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYK 128
           EYDFI++G G  G  VA+RLSE+P WK+LL+EAG        IP +  N I S +++ Y 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 129 TEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEV 188
           TE E   ACL    QRC WP GK +GGTS++N M+Y RGN+ +YDDWA  GN GW+YN+V
Sbjct: 124 TEPEPM-ACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDV 182

Query: 189 LPYFKKAE-RIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGK 247
           LP+FKK+E  + + E+  + YH   G + V    YN P+  A L+AG E G+ + D NG+
Sbjct: 183 LPFFKKSEDNLDLDEV-GTEYHAKGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNGQ 241

Query: 248 TQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT 307
             TGF  AQ T     R SSA+ ++ P + R NL +  ++   KILI P TK   GV  +
Sbjct: 242 NSTGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTATKILIHPHTKNVLGVEVS 301

Query: 308 IK-GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEH 365
            + G   KIL +KEV+LSAGA NSP +L+LSG+GP++ L  +N+  + NL  VG+NL  H
Sbjct: 302 DQFGSTRKILVKKEVVLSAGAVNSPHILLLSGVGPKDELQQVNVRTVHNLPGVGKNLHNH 361

Query: 366 L 366
           +
Sbjct: 362 V 362

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  260 bits (664), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 138/301 (45%), Positives = 188/301 (62%), Gaps = 3/301 (0%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYK 128
           EYDFI++G G  G  VA+RLSE+P WK+LL+EAG        IP +  N I S +++ Y 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 129 TEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEV 188
           TE E   ACL    QRC WP GK +GGTS++N M+Y RGN+ +YDDWA  GN GWSY +V
Sbjct: 124 TEPERM-ACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDV 182

Query: 189 LPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKT 248
           LP+FKK+E     +   + YH   G + V    YN P+  A L+AG E G+ + D NG+ 
Sbjct: 183 LPFFKKSEDNLELDAVGTEYHAKGGLLPVGKFPYNPPLSYALLKAGEEMGFSVQDLNGQN 242

Query: 249 QTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI 308
            TGF  AQ T     R SSA+ ++ P + R NL +  ++ V K+LI P TK   GV  + 
Sbjct: 243 STGFMIAQMTARNGIRYSSARAFLRPARMRNNLHILLNTTVTKVLIHPGTKNVVGVEVSD 302

Query: 309 K-GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHL 366
           + G   KIL +KEVI+S GA NSP++L+LSG+GP+E L  +N+  + +L  VG+NL  H+
Sbjct: 303 QFGSMRKILVKKEVIVSGGAVNSPQILLLSGVGPKEDLQKVNVRPVHHLPGVGKNLHNHV 362

Query: 367 A 367
           A
Sbjct: 363 A 363

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh PE=1 SV=1

 Score =  220 bits (561), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 132/324 (40%), Positives = 179/324 (55%), Gaps = 22/324 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG--------HYFNYLVDIPV-LNTNLI 119
           EY FI+VGAG  GC +ANRL+E P+ ++LLLEAG            + + +P  L  NL 
Sbjct: 45  EYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLC 104

Query: 120 LSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLG 179
               NW Y TE +      GL G+   WP G+  GG+S +N M+Y RG+  +Y+ W + G
Sbjct: 105 DDKYNWYYHTEAQP-----GLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQG 159

Query: 180 NYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY 239
             GW Y   LPYF+KA++    EL  + Y G  G + V   + N P+  AFLQA  +AGY
Sbjct: 160 AEGWDYAHCLPYFRKAQK---HELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGY 216

Query: 240 PLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT 298
           P   D NG  Q GF     T+H+  R S+A  Y+ P   R NL  +  + V ++L +   
Sbjct: 217 PFTEDMNGFQQEGFGWMDMTIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFE--G 274

Query: 299 KKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR- 357
            +A GV     G  HK    +EVILS GA NSP+LLMLSG+G  + L  L IPV+ +L  
Sbjct: 275 TRAVGVEYIKDGQSHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPG 334

Query: 358 VGENLQEHLAMAGLTFLVNQPIGL 381
           VG+NLQ+HL +  +     QPI L
Sbjct: 335 VGQNLQDHLEIY-IQHACTQPITL 357

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2 SV=2

 Score =  218 bits (554), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/311 (41%), Positives = 174/311 (55%), Gaps = 21/311 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG--------HYFNYLVDIPV-LNTNLI 119
           EY +++VGAG  GC +A RL+E P  ++LLLEAG           ++ + +P  L  NL 
Sbjct: 40  EYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLC 99

Query: 120 LSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLG 179
               NW Y TE +      GL G+   WP G+  GG+S +N M+Y RG+  +Y+ W + G
Sbjct: 100 DDRYNWCYHTEVQR-----GLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQG 154

Query: 180 NYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY 239
             GW Y   LPYF+KA   Q  EL  S Y G  G + V   + N P+  AFL+A  +AGY
Sbjct: 155 ARGWDYAHCLPYFRKA---QGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGY 211

Query: 240 PLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT 298
           PL  D NG  Q GF     T+H+  R S+A  Y+ P   R NL  +  + V ++L +   
Sbjct: 212 PLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFE--G 269

Query: 299 KKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR- 357
            +A GV     G  H+  A KEVILS GA NSP+LLMLSGIG  + L  L IPV+ +L  
Sbjct: 270 TRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPG 329

Query: 358 VGENLQEHLAM 368
           VG+NLQ+HL +
Sbjct: 330 VGQNLQDHLEI 340

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1 SV=1

 Score =  216 bits (551), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 129/324 (39%), Positives = 181/324 (55%), Gaps = 22/324 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG--------HYFNYLVDIPV-LNTNLI 119
           EY F++VGAG  GC +A+RL+E P+ ++LLLEAG            + + +P  L +NL 
Sbjct: 42  EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLC 101

Query: 120 LSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLG 179
               NW Y TE +      G+  +   WP G+  GG+S +N M+Y RG+  +Y+ W + G
Sbjct: 102 DDKYNWYYHTEPQP-----GMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREG 156

Query: 180 NYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY 239
             GW Y   LPYF+KA+R    EL  + Y G  G + V   + N P+  AFLQA  +AGY
Sbjct: 157 AEGWDYAHCLPYFRKAQR---HELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGY 213

Query: 240 PLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT 298
           P   D NG  Q GF     T+H+  R S+A  Y+ P+  R NL  +  + V ++L +   
Sbjct: 214 PFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFE--G 271

Query: 299 KKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR- 357
            +A GV     G  HK    +EVILS GA NSP+LLMLSG+G  + L  L+IPV+ +L  
Sbjct: 272 TRAVGVEYIKDGQRHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPG 331

Query: 358 VGENLQEHLAMAGLTFLVNQPIGL 381
           VG+NLQ+HL +  +     QPI L
Sbjct: 332 VGQNLQDHLEVY-VQQACTQPITL 354

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q1IG70|BETA_PSEE4 Choline dehydrogenase OS=Pseudomonas entomophila (strain L48) GN=betA PE=3 SV=1

 Score =  216 bits (550), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 134/324 (41%), Positives = 192/324 (59%), Gaps = 22/324 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLN 124
           E+D+IIVGAG  G T+A RL+E     +LLLEAG   + F++   +P  L   L     N
Sbjct: 4   EFDYIIVGAGSAGNTLATRLTEDASVSVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYN 63

Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW 183
           W Y+T+ E       + G+R     GKG+GG+SLIN M Y RGN  ++D WA+L G   W
Sbjct: 64  WAYETDPEPF-----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDW 118

Query: 184 SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY-NTPMLDAFLQAGMEAGYPLV 242
           +Y + LPYF+KAE     ++  + YHG +G + V   +  N P+  A ++AG++AGYP  
Sbjct: 119 TYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGYPRT 175

Query: 243 -DYNGKTQTGFARAQATLHKRSRRSS-AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKK 300
            D NG  Q GF     ++ K+ RRSS A+ Y+D  KKR NLT+   +   ++L D   K+
Sbjct: 176 EDLNGYQQEGFGPMDRSVTKKGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFD--GKR 233

Query: 301 ACGVLATIKGIDHKI--LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR- 357
           A GV   +   + ++   ARKEVI+S+GA  SP+LL  SG+GP+  L  L+IPV+ +L  
Sbjct: 234 AVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPG 293

Query: 358 VGENLQEHLAMAGLTFLVNQPIGL 381
           VGENLQ+HL +  L +   QP+ L
Sbjct: 294 VGENLQDHLELY-LQYACTQPVSL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas entomophila (strain L48) (taxid: 384676)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q88CW6|BETA_PSEPK Choline dehydrogenase OS=Pseudomonas putida (strain KT2440) GN=betA PE=3 SV=1

 Score =  215 bits (548), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 135/324 (41%), Positives = 191/324 (58%), Gaps = 22/324 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLN 124
           E+D+IIVGAG  G T+A RL+E     +LLLEAG   + F++   +P  L   L     N
Sbjct: 4   EFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYN 63

Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW 183
           W Y+T+ E       + G+R     GKG+GG+SLIN M Y RGN  ++D WA+L G   W
Sbjct: 64  WAYETDPEPY-----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLEDW 118

Query: 184 SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY-NTPMLDAFLQAGMEAGYPLV 242
           +Y + LPYF+KAE     ++  + YHG +G + V   +  N P+  A ++AG++AGYP  
Sbjct: 119 TYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPRT 175

Query: 243 -DYNGKTQTGFARAQATLHKRSRRSS-AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKK 300
            D NG  Q GF     T+ K  RRSS A+ Y+D  KKR NLT+   +   ++L D   K+
Sbjct: 176 EDLNGYQQEGFGPMDRTVTKNGRRSSTARGYLDQAKKRPNLTIVTHALTDRVLFD--GKR 233

Query: 301 ACGVLATIKGIDHKI--LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR- 357
           A GV   +   + ++   ARKEVI+S+GA  SP+LL  SG+GP+  L  L+IPV+ +L  
Sbjct: 234 AIGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPG 293

Query: 358 VGENLQEHLAMAGLTFLVNQPIGL 381
           VGENLQ+HL +  L +   QP+ L
Sbjct: 294 VGENLQDHLELY-LQYACTQPVSL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain KT2440) (taxid: 160488)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q4K4K7|BETA_PSEF5 Choline dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betA PE=3 SV=1

 Score =  214 bits (546), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 136/327 (41%), Positives = 190/327 (58%), Gaps = 22/327 (6%)

Query: 66  LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILS 121
           +  EYD+IIVGAG  G T+A RL+E     +LLLEAG   + F++   +P  L   L   
Sbjct: 1   MAQEYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGR 60

Query: 122 PLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GN 180
             NW Y+T+ E       + G+R     GKG+GG+SLIN M Y RGN  +YD WAKL G 
Sbjct: 61  RYNWAYETDPEPH-----MNGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDGWAKLPGL 115

Query: 181 YGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY-NTPMLDAFLQAGMEAGY 239
             W+Y + LPYF+KAE     ++  + YHG +G + V   +  N P+  A ++AG++AGY
Sbjct: 116 EDWTYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGY 172

Query: 240 PLV-DYNGKTQTGFARAQATLHKRSRRSS-AKDYIDPIKKRCNLTVKDSSFVKKILIDPV 297
           P   D NG  Q GF     T+  + RR+S A+ Y+D  KKR  LT+   +   KIL +  
Sbjct: 173 PRTEDLNGYQQEGFGPMDRTVTPKGRRASTARGYLDTAKKRSTLTIVTHALTDKILFE-- 230

Query: 298 TKKACGVLATIKGIDHKI--LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKN 355
            K+A GV       + ++   ARKEVI+S+GA  SP+LL  SG+GP+  L  L+IPV+ +
Sbjct: 231 GKRAVGVSYLQGSTEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHD 290

Query: 356 LR-VGENLQEHLAMAGLTFLVNQPIGL 381
           L  VGENLQ+HL +  L +   QP+ L
Sbjct: 291 LPGVGENLQDHLELY-LQYACTQPVSL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) (taxid: 220664)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B0KN19|BETA_PSEPG Choline dehydrogenase OS=Pseudomonas putida (strain GB-1) GN=betA PE=3 SV=1

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 134/324 (41%), Positives = 191/324 (58%), Gaps = 22/324 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLN 124
           E+D+IIVGAG  G T+A RL+E     +LLLEAG   + F++   +P  L   L     N
Sbjct: 4   EFDYIIVGAGSAGNTLATRLTEDAGVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYN 63

Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW 183
           W Y+T+ E       + G+R     GKG+GG+SLIN M Y RGN  ++D WA+L G   W
Sbjct: 64  WAYETDPEPH-----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDFDGWAELPGLQDW 118

Query: 184 SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY-NTPMLDAFLQAGMEAGYPLV 242
           +Y + LPYF+KAE     ++  + YHG +G + V   +  N P+  A ++AG++AGYP  
Sbjct: 119 TYLDCLPYFRKAE---TRDIGPNDYHGGEGPVSVATPKAGNNPLFHAMVEAGVQAGYPRT 175

Query: 243 -DYNGKTQTGFARAQATLHKRSRRSS-AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKK 300
            D NG  Q GF     ++ K  RRSS A+ Y+D  KKR NLT+   +   ++L D   K+
Sbjct: 176 EDLNGYQQEGFGPMDRSVTKNGRRSSTARGYLDQAKKRPNLTIVTHALSDRVLFD--GKR 233

Query: 301 ACGVLATIKGIDHKI--LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR- 357
           A GV   +   + ++   ARKEVI+S+GA  SP+LL  SG+GP+  L  L+IPV+ +L  
Sbjct: 234 AVGVTYLVGDSEERVEARARKEVIVSSGAIASPQLLQRSGVGPRALLESLDIPVVHDLPG 293

Query: 358 VGENLQEHLAMAGLTFLVNQPIGL 381
           VGENLQ+HL +  L +   QP+ L
Sbjct: 294 VGENLQDHLELY-LQYACTQPVSL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|C3K3D3|BETA_PSEFS Choline dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betA PE=3 SV=1

 Score =  213 bits (543), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 136/325 (41%), Positives = 188/325 (57%), Gaps = 24/325 (7%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPL----- 123
           EYD+IIVGAG  G T+A RL+E     +LLLEAG   +Y +D        +  PL     
Sbjct: 4   EYDYIIVGAGSAGNTLATRLTEDEGVTVLLLEAGGP-DYRLDFRTQMPAALAFPLQGRRY 62

Query: 124 NWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYG 182
           NW Y+T+ E       + G+R     GKG+GG+SLIN M Y RGN  +YD+WAKL G   
Sbjct: 63  NWAYETDPEPH-----MDGRRMECGRGKGLGGSSLINGMCYIRGNAMDYDNWAKLPGLEN 117

Query: 183 WSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY-NTPMLDAFLQAGMEAGYPL 241
           W+Y + LPYF+KAE   I     + YHG +G + V   +  N P+  A ++AG++AGYP 
Sbjct: 118 WTYLDCLPYFRKAETRDIGP---NDYHGGEGPVSVTTPKAGNNPLFHAMVEAGVQAGYPR 174

Query: 242 V-DYNGKTQTGFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299
             D NG  Q GF     T+ K  RR S+A+ Y+D  KKR  LT+   +   K+L +   K
Sbjct: 175 TDDLNGYQQEGFGPMDRTVTKNGRRASTARGYLDTAKKRSTLTIVTHALTDKVLFE--GK 232

Query: 300 KACGVLATIKGIDHKI--LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR 357
           +A GV   I   + ++   ARKEV++ +GA  SP+LL  SG+GP + L  L+IPV+ +L 
Sbjct: 233 RAVGVRYLIGAAEERVEARARKEVLVCSGAIASPQLLQRSGVGPAKLLESLDIPVVHDLP 292

Query: 358 -VGENLQEHLAMAGLTFLVNQPIGL 381
            VGENLQ+HL +  L +   QP+ L
Sbjct: 293 GVGENLQDHLELY-LQYACTQPVSL 316

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Pseudomonas fluorescens (strain SBW25) (taxid: 216595)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	511
350401264	627	PREDICTED: glucose dehydrogenase [accept	0.696	0.567	0.495	2e-93
156551708	624	PREDICTED: glucose dehydrogenase [accept	0.698	0.572	0.483	3e-93
340720647	626	PREDICTED: glucose dehydrogenase [accept	0.696	0.568	0.493	3e-93
383860470	624	PREDICTED: glucose dehydrogenase [accept	0.696	0.570	0.495	6e-93
332023084	634	Glucose dehydrogenase [Acromyrmex echina	0.722	0.582	0.477	2e-92
322796401	624	hypothetical protein SINV_00375 [Solenop	0.722	0.591	0.463	2e-92
270009065	614	hypothetical protein TcasGA2_TC015700 [T	0.659	0.548	0.502	3e-92
242018476	630	glucose dehydrogenase precursor, putativ	0.724	0.587	0.486	4e-92
328785230	625	PREDICTED: glucose dehydrogenase [accept	0.698	0.571	0.480	1e-91
332376573	616	unknown [Dendroctonus ponderosae]	0.628	0.521	0.506	2e-91

>gi|350401264|ref|XP_003486103.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus impatiens]

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/361 (49%), Positives = 242/361 (67%), Gaps = 5/361 (1%)

Query: 52  FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  EYDF+IVGAG  G  VANRLSEI  W +LLLEAG   N + D
Sbjct: 38  YDQLDPESRPIDKYPLYAEYDFVIVGAGSAGAVVANRLSEISKWNVLLLEAGPDENEVTD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L L+ L+W YKTE    RACL +KG RC WP GK +GG+S++N MLY RGN+ 
Sbjct: 98  VPSLAAYLQLTKLDWKYKTEPTG-RACLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRH 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  +GN GW Y++ L YFKK+E  +   LQ S YH T G++ V  + + TP++ AF
Sbjct: 157 DYDYWESMGNPGWGYDQALYYFKKSEDNRNPYLQRSPYHSTGGYLTVQESPWKTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG E GY   D NG+ QTGF  AQ T+ + SR S+AK ++ PI+ R N+    +S V 
Sbjct: 217 VQAGTEMGYENRDINGQEQTGFMIAQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNSHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           ++LI+PVT KA GV     G    + ARKEVILSAGA NS ++LMLSG+GP+EHL  + I
Sbjct: 277 RVLINPVTMKATGVEFVRDGRRQMVRARKEVILSAGAINSAQILMLSGVGPKEHLRHVGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPV--HFAGKLRHSLSPITNS 408
           PVIK+LRVG+NLQ+H+ M GLTFL+++P+ ++QDRL +  PV  H+    R  ++ +   
Sbjct: 337 PVIKDLRVGDNLQDHVGMGGLTFLIDKPVAIVQDRL-QAAPVTMHYVANGRGPMTTLGGV 395

Query: 409 E 409
           E
Sbjct: 396 E 396

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|156551708|ref|XP_001600419.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 174/360 (48%), Positives = 244/360 (67%), Gaps = 3/360 (0%)

Query: 52  FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  EYDF+++G G  G  VA+RLSEI HWK+LLLEAG   N + D
Sbjct: 38  YDQLDPESRPIDRYPLDAEYDFVVIGGGSAGAVVASRLSEIMHWKVLLLEAGPDENEITD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L L+ L+W YKTE  + R+CL +KG RC WP GK +GG+S++N MLY RGN+ 
Sbjct: 98  VPSLAAYLQLTKLDWKYKTEP-NGRSCLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRH 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  LGN GW Y++ L YFKK+E  +   L+NS YHGT G++ V  + + TP++ AF
Sbjct: 157 DYDHWEALGNPGWGYDQALYYFKKSEDNRNPYLRNSPYHGTGGYLTVQESPWRTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG E GY   D NG+ QTGF  AQ T+ + +R S+AK ++ P++ R NL     + V 
Sbjct: 217 VQAGTEIGYENRDINGEYQTGFMIAQGTIRRGTRCSTAKAFLRPVRLRKNLHTAMKAHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           +ILI+ VT KA GV     G   ++ ARKEVILSAGA NS ++LMLSGIGP+EHL ++ I
Sbjct: 277 RILINSVTMKATGVEFVRDGHRQQVRARKEVILSAGAINSAQILMLSGIGPREHLQEMGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRL-IKEMPVHFAGKLRHSLSPITNSE 409
           PV+K+LRVG+N+Q+H+ M GLTFLV++P+ ++QDR     M +H+    R  ++ +   E
Sbjct: 337 PVLKDLRVGDNMQDHVGMGGLTFLVDKPVAIVQDRFQAAPMTMHYVANGRGPMTTLGGVE 396

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|340720647|ref|XP_003398745.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Bombus terrestris]

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/361 (49%), Positives = 242/361 (67%), Gaps = 5/361 (1%)

Query: 52  FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  EYDF++VGAG  G  VANRLSEI  W +LLLEAG   N + D
Sbjct: 38  YDQLDPESRPIDKYPLYAEYDFVVVGAGSAGAVVANRLSEIAKWNVLLLEAGPDENEVTD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L L+ L+W YKTE    RACL +KG RC WP GK +GG+S++N MLY RGN+ 
Sbjct: 98  VPSLAAYLQLTKLDWKYKTEPTG-RACLAMKGGRCNWPRGKVLGGSSVLNYMLYVRGNRH 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  +GN GW Y++ L YFKK+E  +   LQ S YH T G++ V  + + TP++ AF
Sbjct: 157 DYDYWESMGNPGWGYDQALYYFKKSEDNRNPYLQRSPYHSTGGYLTVQESPWKTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG E GY   D NG+ QTGF  AQ T+ + SR S+AK ++ PI+ R N+    +S V 
Sbjct: 217 VQAGTEMGYENRDINGEEQTGFMIAQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNSHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           ++LI+PVT KA GV     G    + ARKEVILSAGA NS ++LMLSG+GP+EHL  + I
Sbjct: 277 RVLINPVTMKATGVEFVRDGRRQMVRARKEVILSAGAINSAQILMLSGVGPKEHLRHVGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPV--HFAGKLRHSLSPITNS 408
           PVIK+LRVG+NLQ+H+ M GLTFL+++P+ ++QDRL +  PV  H+    R  ++ +   
Sbjct: 337 PVIKDLRVGDNLQDHVGMGGLTFLIDKPVAIVQDRL-QAAPVTMHYVANGRGPMTTLGGV 395

Query: 409 E 409
           E
Sbjct: 396 E 396

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383860470|ref|XP_003705712.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata]

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 179/361 (49%), Positives = 241/361 (66%), Gaps = 5/361 (1%)

Query: 52  FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  EYDF++VG G  G  VA+RLSEIP+W +LLLEAG   N + D
Sbjct: 38  YDQLDPESRPIDRYPLYAEYDFVVVGGGSAGAVVASRLSEIPNWNVLLLEAGPDENEITD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L L+ L+W YKTE    RACLG+K  RC WP GK +GG+S++N MLY RGNK 
Sbjct: 98  VPSLAAYLQLTKLDWKYKTEPTG-RACLGMKAGRCNWPRGKVLGGSSVLNYMLYVRGNKH 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  LGN GW Y++ L YFKK+E  +   LQ S YH T G++ V  + + TP++ AF
Sbjct: 157 DYDYWESLGNPGWGYDQALYYFKKSEDNRNPYLQKSPYHSTGGYLTVQESPWKTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG E GY   D NG  QTGF  AQ T+ + SR S+AK ++ PI+ R N+    +S V 
Sbjct: 217 VQAGTEIGYENRDINGARQTGFMIAQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNSHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           KILIDP+T +A GV     G    + ARKEVILSAGA NSP++LMLSGIGP+EHL  + I
Sbjct: 277 KILIDPITLRATGVEFFRDGRRQIVRARKEVILSAGAINSPQILMLSGIGPKEHLRQMGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPV--HFAGKLRHSLSPITNS 408
            VIK+L+VG+NLQ+H+ M GLTFL+++P+ ++QDR  +  PV  H+    R  ++ +   
Sbjct: 337 RVIKDLKVGDNLQDHVGMGGLTFLIDKPVAIVQDRF-QAAPVTMHYVANGRGPMTTLGGV 395

Query: 409 E 409
           E
Sbjct: 396 E 396

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|332023084|gb|EGI63349.1| Glucose dehydrogenase [Acromyrmex echinatior]

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/373 (47%), Positives = 251/373 (67%), Gaps = 4/373 (1%)

Query: 52  FEQLEYKSSNKDQDLLL-EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  +YDFI++G+G  G  +A+RLSEIP+W +LLLEAG   N + D
Sbjct: 38  YDQLDPESRLIDRHPLYSDYDFIVIGSGSAGAVIASRLSEIPNWNVLLLEAGPDENEITD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L LS L+W YKTE    +ACL +KG RC WP GK +GG+S+ N MLY RGNK+
Sbjct: 98  VPSLAAYLQLSTLDWKYKTEATG-KACLAMKGGRCNWPRGKVIGGSSVFNYMLYVRGNKQ 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  LGN GW Y++VL YFKK+E  +   L+ S YH T G++ V  + + TP++ AF
Sbjct: 157 DYDHWESLGNPGWGYDQVLYYFKKSEDNRNPYLRRSPYHATDGYLTVQESPWKTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG+E GY   D NG+ QTGF  +Q T+ + SR S+AK ++ PI+ R N+ +  +S V 
Sbjct: 217 VQAGVELGYENRDINGEKQTGFMISQGTIRRGSRCSTAKAFLRPIRLRKNIHIAMNSHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           +I+IDP+T +A GV     G    I ARKEVILSAGA NSP++LMLSGIGP+EHL  + I
Sbjct: 277 RIVIDPLTMRAIGVEFVRNGRRQIIRARKEVILSAGAINSPQILMLSGIGPKEHLQHVGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIK-EMPVHFAGKLRHSLSPITNSE 409
           PVIK+L+VGENLQ+H+ M GLTFL+++ + ++QDR     M +H+    R  ++ +   E
Sbjct: 337 PVIKDLQVGENLQDHVGMGGLTFLIDKSVAIVQDRFQAIPMMMHYVINGRGPMTTLGGVE 396

Query: 410 TLSTNIKTIFAAH 422
             +  + T +A H
Sbjct: 397 GYAF-VNTKYANH 408

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796401|gb|EFZ18935.1| hypothetical protein SINV_00375 [Solenopsis invicta]

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 173/373 (46%), Positives = 251/373 (67%), Gaps = 4/373 (1%)

Query: 52  FEQLEYKSSNKDQD-LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  EYDFI++G G  G  +A+RLSEIP W +LLLEAG   N + D
Sbjct: 38  YDQLDPESRPIDKHPLYFEYDFIVIGGGSAGAVIASRLSEIPDWNVLLLEAGPDENEITD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L LS L+W YKTE    +ACL +KG RC WP G+ +GG+S++N MLY RGNK+
Sbjct: 98  VPSLAAYLQLSKLDWKYKTEATG-KACLAMKGGRCNWPRGRVLGGSSVLNYMLYVRGNKQ 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  LGN GW Y++VL YFKK+E  +   L+ S+YH + G++ V  + + TP++ AF
Sbjct: 157 DYDHWESLGNPGWGYDQVLYYFKKSEDNRNPYLRKSTYHASGGYLTVQESPWKTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG+E GY   D NG+ QTGF  +Q  + + SR S+AK ++ P++ R N+ +  +S V 
Sbjct: 217 VQAGVEMGYENRDINGERQTGFMISQGNIRRGSRCSTAKAFLRPVRLRKNIHIAMNSHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           +I+IDP+T +A GV     G    + ARKE+ILSAGA NSP++LMLSGIGP+EHL  + I
Sbjct: 277 RIVIDPLTMRATGVEFVRNGRKQIVKARKEIILSAGAINSPQILMLSGIGPKEHLQHIGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIK-EMPVHFAGKLRHSLSPITNSE 409
           PVIK+L+VG+NLQ+H+ M GLTFL+++P+ ++QDR     M +H+    R  ++ +   E
Sbjct: 337 PVIKDLQVGDNLQDHIGMGGLTFLIDKPVAIVQDRFPAIPMMMHYVINGRGPMTTLGGVE 396

Query: 410 TLSTNIKTIFAAH 422
             +  + T +A H
Sbjct: 397 GYAF-VNTKYANH 408

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270009065|gb|EFA05513.1| hypothetical protein TcasGA2_TC015700 [Tribolium castaneum]

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 174/346 (50%), Positives = 231/346 (66%), Gaps = 9/346 (2%)

Query: 45  SYIEDGIFEQLEYKSSNKDQD---LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
           ++IE+G     + +S N+  D   LL  YDFIIVGAG  GC +ANRLSE P W +LLLEA
Sbjct: 26  NFIEEG-----DAQSFNEPPDTPVLLPSYDFIIVGAGTAGCVLANRLSENPSWNVLLLEA 80

Query: 102 GHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINT 161
           G   NYL+D+PVL   +  +  NW YKTE  D + CLG++ Q+C WP GK VGG+S++N 
Sbjct: 81  GRPENYLMDLPVLANYIQFTDANWRYKTEPSD-KFCLGMENQQCNWPRGKVVGGSSVLNY 139

Query: 162 MLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTE 221
           M+YTRGN R+YD WA+LGN GW + +VLPYFKK E   +    N+SYH   G++ V Y+ 
Sbjct: 140 MIYTRGNWRDYDKWAELGNEGWGFKDVLPYFKKIENFMVPGPYNASYHNHDGYLAVSYSP 199

Query: 222 YNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNL 281
           Y T + DA L++    G  LVDYNG  Q G +R Q TL    R SS++ Y+ PIK R N 
Sbjct: 200 YKTKIADAVLESAQLMGLKLVDYNGPIQVGVSRFQVTLRDGIRESSSRAYLHPIKNRPNF 259

Query: 282 TVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341
            ++  S V KILIDP TKK  GV    KG  +KI A KEV+++ GA NSP+LLMLSGIGP
Sbjct: 260 HMRKYSTVTKILIDPTTKKVQGVEVDTKGTIYKIGASKEVLVAGGAVNSPQLLMLSGIGP 319

Query: 342 QEHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLI 387
           ++HL  + IPV+ NL+VG NL +H+A+ GLTF +++P  L  +R++
Sbjct: 320 KKHLTQMGIPVLSNLKVGYNLLDHVALGGLTFRIDEPYSLKTERVL 365

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018476|ref|XP_002429701.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514704|gb|EEB16963.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 183/376 (48%), Positives = 246/376 (65%), Gaps = 6/376 (1%)

Query: 52  FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++ L+ +S   DQ  L  EYDFI+VG G  G  VA+RLSEIP WKILLLEAG   N + D
Sbjct: 40  YDSLDPESRPIDQYPLYKEYDFIVVGGGSAGAVVASRLSEIPDWKILLLEAGPDENEISD 99

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L LS L+W YKTE    +ACLG+KG RC WP GK +GG+S++N M+Y RGNK+
Sbjct: 100 VPALAAFLQLSRLDWQYKTEPTG-KACLGMKGGRCNWPRGKVLGGSSVLNYMVYVRGNKK 158

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +Y+ W  LGN GW Y + L YFKK+E  +   L  + YH   G++ V    + TP+  AF
Sbjct: 159 DYEHWESLGNPGWGYPDALYYFKKSEDNRNPYLARTKYHSRGGYLTVQEAPWRTPLSLAF 218

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG E GY  VD NG +QTGF  AQ TL + SR S+AK ++ P++ R NL     S V 
Sbjct: 219 VQAGQEIGYDNVDINGASQTGFMLAQGTLRRGSRCSTAKAFLRPVRLRKNLHTAMKSQVI 278

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           KILI+P   KA GV+    G+     ARKEVI+SAGA N+P+LLMLSGIGP+EHL  L I
Sbjct: 279 KILINPKINKAYGVIFIRNGVKQIAYARKEVIMSAGAINTPQLLMLSGIGPREHLQSLKI 338

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPV--HFAGKLRHSLSPITNS 408
           PV++NL+VGENLQ+H+ + G+TFL++QP+ ++QDR  + +PV  H+    R  ++ +   
Sbjct: 339 PVVQNLKVGENLQDHVGLGGMTFLIDQPVSIVQDRF-QTVPVTTHYVINERGPMTSLGGL 397

Query: 409 ETLSTNIKTIFAAHHD 424
           E ++  I T +A   D
Sbjct: 398 EAVAF-INTKYANKSD 412

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785230|ref|XP_003250566.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Apis mellifera] gi|328785232|ref|XP_003250567.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Apis mellifera] gi|328785234|ref|XP_003250568.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 3 [Apis mellifera]

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 173/360 (48%), Positives = 237/360 (65%), Gaps = 3/360 (0%)

Query: 52  FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
           ++QL+ +S   D+  L  EYDFI+VG G  G  VANRLSEIP W +LLLEAG   N + D
Sbjct: 38  YDQLDPESRPIDRYPLYPEYDFIVVGGGSAGAVVANRLSEIPKWNVLLLEAGPDENEVTD 97

Query: 111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
           +P L   L L+ ++W YKTE    RACL +K  RC WP GK +GG+S++N MLY RGN+ 
Sbjct: 98  VPSLAAYLQLTKIDWKYKTEPTG-RACLAMKDGRCNWPRGKVLGGSSVLNYMLYVRGNRH 156

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
           +YD W  +GN GW Y++ L YFKK+E  +   LQ S YH T G++ V  + + TP++ AF
Sbjct: 157 DYDHWESMGNPGWGYDQALYYFKKSEDNRNPYLQKSPYHSTGGYLTVQESPWKTPLVVAF 216

Query: 231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
           +QAG E GY   D NG+ QTGF  AQ T+ + SR S+AK ++ PI+ R N+    +  V 
Sbjct: 217 VQAGTEIGYENRDINGERQTGFMIAQGTIRRGSRCSTAKAFLRPIRLRRNIHTAMNCHVT 276

Query: 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
           +ILIDP+  +A GV     G    + ARKEVILSAGA NS ++LMLSGIGP+EHL  + I
Sbjct: 277 RILIDPIAMRATGVEFVRDGRRQIVRARKEVILSAGAINSAQILMLSGIGPKEHLRHIGI 336

Query: 351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRL-IKEMPVHFAGKLRHSLSPITNSE 409
           PVIK+LRVG+NLQ+H+ M GLTFL+++P+ ++QDR     + +H+    R  ++ +   E
Sbjct: 337 PVIKDLRVGDNLQDHVGMGGLTFLIDKPVAIVQDRFQAAAITMHYVANGRGPMTTLGGVE 396

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|332376573|gb|AEE63426.1| unknown [Dendroctonus ponderosae]

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 163/322 (50%), Positives = 219/322 (68%), Gaps = 1/322 (0%)

Query: 66  LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNW 125
           +L EYDFI+VGAG  GC VANRLSE P+W +LL+EAG   N+++D+P+L   L  +  NW
Sbjct: 47  MLKEYDFIVVGAGTAGCAVANRLSENPNWTVLLVEAGRPENFIMDMPILANYLQFTETNW 106

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSY 185
            Y+TE  +  ACLG   QRC WP GK VGG+S++N M+YTRGN+R+YD WAK+GN GWS+
Sbjct: 107 RYQTE-PNGNACLGFDEQRCNWPRGKVVGGSSVLNYMIYTRGNRRDYDHWAKMGNEGWSF 165

Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 245
            +VLPYF+K E   +    ++ YHG  G++ V Y  Y T + DA + A ++ G P VDYN
Sbjct: 166 KDVLPYFRKIENFAVPGNISAGYHGKNGYLSVSYAPYRTKIADAIVNASLQYGLPYVDYN 225

Query: 246 GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVL 305
           G TQ G +  Q +L    R SS++ Y+ PI  R NL +   S VK+I+IDP +++  G+ 
Sbjct: 226 GPTQVGVSHLQLSLRDGVRESSSRAYLHPISNRPNLHLTKYSMVKRIVIDPKSQQVKGIE 285

Query: 306 ATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEH 365
               G  + I  +KEVI SAGA NSP+LLMLSG+GP++HL  L IPVI NLRVG NL +H
Sbjct: 286 MVKNGQTYFIKVKKEVISSAGAINSPQLLMLSGVGPKKHLQKLGIPVISNLRVGYNLMDH 345

Query: 366 LAMAGLTFLVNQPIGLLQDRLI 387
           + M GLTFL+N+ + L  +RLI
Sbjct: 346 IGMGGLTFLINETVSLKTERLI 367

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	511
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.604	0.501	0.532	4.4e-84
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.688	0.500	0.457	6.6e-81
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.718	0.505	0.45	2e-79
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.626	0.514	0.5	2.6e-79
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.624	0.509	0.478	1.8e-78
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.626	0.515	0.463	2.1e-75
FB|FBgn0030587	616	CG9522 [Drosophila melanogaste	0.673	0.558	0.455	6.5e-74
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.659	0.389	0.442	8.4e-74
FB|FBgn0030586	626	CG12539 [Drosophila melanogast	0.634	0.517	0.457	8.9e-70
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.632	0.510	0.435	6.3e-69

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 165/310 (53%), Positives = 215/310 (69%)

Query:    67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWG 126
             L EYDFIIVGAG  GC +ANRLSEI    +LLLEAG    ++ D+P+      ++  NWG
Sbjct:    45 LPEYDFIIVGAGSAGCVMANRLSEISSASVLLLEAGDQETFISDVPLTAALTQMTRYNWG 104

Query:   127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYN 186
             YK E  +  AC GLKG  C WP G+GVGGTSLIN MLYTRG++R+YD+WA   N GWSY+
Sbjct:   105 YKAEPTE-HACQGLKGGVCNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAANNSGWSYD 163

Query:   187 EVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNG 246
             E+LPYF+K+ERI I EL  S YHG  G + V YT+Y + +L AFL++G E GY + D NG
Sbjct:   164 ELLPYFRKSERIGIPELYKSPYHGRNGQLDVQYTDYRSQLLKAFLKSGREMGYEITDPNG 223

Query:   247 KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLA 306
             +   GFAR+QAT+    R S++K +I P+  R NL +   S+V +++IDP+TK A GV  
Sbjct:   224 EHLMGFARSQATIRNGRRCSTSKAFIQPVVNRKNLHISMKSWVTRLIIDPITKTATGVEF 283

Query:   307 TIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHL 366
               +   + + ARKEVILSAG   SP+LLMLSGIGP EHL + NI V+++L VG NLQ+H+
Sbjct:   284 VKQRQRYVVRARKEVILSAGTIASPQLLMLSGIGPAEHLREHNITVMQDLPVGYNLQDHI 343

Query:   367 AMAGLTFLVN 376
              + GL F+VN
Sbjct:   344 TLNGLVFVVN 353

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 163/356 (45%), Positives = 236/356 (66%)

Query:    52 FEQLEYKSSNKDQ-DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD 110
             ++ ++ +S   DQ +L  EYDFI+VG+G  G  VANRLSE+  WK+LL+EAG   N + D
Sbjct:    38 YDAVDPESRPLDQLNLYPEYDFIVVGSGSAGAVVANRLSEVRKWKVLLIEAGPDENEISD 97

Query:   111 IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
             +P L   L LS L+W YKTE    +ACLG++  RC WP G+ +GG+S++N MLY RGN+ 
Sbjct:    98 VPSLAAYLQLSKLDWAYKTEPST-KACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRH 156

Query:   171 NYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
             +YD WA LGN GW Y+ VL YFKK+E  +   L N+ YHG  G + V  + +++P++ AF
Sbjct:   157 DYDHWASLGNPGWDYDNVLRYFKKSEDNRNPYLANNKYHGRGGLLTVQESPWHSPLVAAF 216

Query:   231 LQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290
             ++AG + GY   D NG  Q GF  AQ T+ + SR S+AK ++ PI+ R N  +  +S V 
Sbjct:   217 VEAGTQLGYDNRDINGAKQAGFMIAQGTIRRGSRCSTAKAFLRPIRMRKNFHLSMNSHVT 276

Query:   291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
             +++I+P T +A  V     G  ++I AR+EVI+SAGA N+P+L+MLSG+GP++HL    I
Sbjct:   277 RVIIEPGTMRAQAVEFVKHGKVYRIAARREVIISAGAINTPQLMMLSGLGPRKHLEKHGI 336

Query:   351 PVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPIT 406
              V+++L VGEN+Q+H+ M GLTFLV++P+ ++QDR      V F   LR    P+T
Sbjct:   337 RVLQDLPVGENMQDHVGMGGLTFLVDKPVAIVQDRF-NPTAVTFQYVLRER-GPMT 390

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 171/380 (45%), Positives = 243/380 (63%)

Query:    34 INVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPH 93
             + +  F  A  +Y    +F+  E +  N  Q + L YDFII+G G  G  +A+RLSEIPH
Sbjct:    61 LTILPFLIAAIAYYNYDLFDP-ENRPFNVQQ-VGLAYDFIIIGGGSAGTVLASRLSEIPH 118

Query:    94 WKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGV 153
             WKILLLEAG +   + D+P+L+  L  S ++W Y+T+ +   AC  +K +RC W  GK +
Sbjct:   119 WKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPT-ACQAMKDKRCCWTRGKVL 177

Query:   154 GGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISEL-QNSSYHGTQ 212
             GG+S++NTMLY RGNKR++D WA  GN GWSY ++LPYF+K+E  +   L +N  YHGT 
Sbjct:   178 GGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPYFRKSEDQRNPYLARNKRYHGTG 237

Query:   213 GFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYI 272
             G   V    YNTP+  AFLQAG E GY +VD NG+ QTGF   Q  + + SR S+AK ++
Sbjct:   238 GLWTVQDAPYNTPIGPAFLQAGEEMGYDIVDVNGEQQTGFGFYQFNMRRGSRSSTAKSFL 297

Query:   273 DPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 332
              P + R NL V   S V K+L DP TK+A GV     G    + A +EVILSAGA  SP 
Sbjct:   298 RPARLRPNLHVALFSHVTKVLTDPHTKRATGVQFIRDGRLQNVYATREVILSAGAIGSPH 357

Query:   333 LLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMP 391
             L+MLSGIG  E L  + IP++++L  VG+NLQ+H+A+ G+ FL++ PI ++  R++    
Sbjct:   358 LMMLSGIGHGEELGRVGIPLVQHLPGVGQNLQDHIAVGGIAFLIDYPISIVMKRMVN--- 414

Query:   392 VHFAGKLRHSLS---PITNS 408
             ++ A  LR++++   P+T+S
Sbjct:   415 INTA--LRYAITEDGPLTSS 432

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 162/324 (50%), Positives = 218/324 (67%)

Query:    54 QLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPV 113
             QL+ ++ ++ Q +  +YDFI+VGAG  GC +A RLSE P W++LLLEAG   NY +DIP+
Sbjct:    46 QLDLENLDEGQVITTKYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPI 105

Query:   114 LNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYD 173
             +   L L  +NW YKTE  +   CL +   RC WP GK +GG+S++N M+YTRGN+R+YD
Sbjct:   106 VAHLLQLGEINWKYKTEPSNSY-CLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYD 164

Query:   174 DWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQA 233
              WA+LGN GWSY EVLPYFKK E   + +   +   G  G + V Y+E  T + DAF+ A
Sbjct:   165 RWARLGNPGWSYEEVLPYFKKYEGSVVPDADENLV-GRNGPVKVSYSETRTRIADAFVGA 223

Query:   234 GMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIK-KRCNLTVKDSSFVKKI 292
               +AG P  DYNG  Q   +  QA ++  +R SS + Y+ PIK KR NL VK ++ V KI
Sbjct:   224 TQDAGLPRGDYNGDKQIRVSYLQANIYNETRWSSNRAYLYPIKGKRRNLHVKKNALVTKI 283

Query:   293 LIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV 352
             LIDP TK A G++  + G   KILARKEVILSAGA N+P+LLMLSG+GP +HL ++ I  
Sbjct:   284 LIDPQTKSAFGIIVKMDGKMQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGIKP 343

Query:   353 IKNLRVGENLQEHLAMAGLTFLVN 376
             + +L VG NLQ+H+A A ++FL N
Sbjct:   344 LADLAVGYNLQDHIAPA-ISFLCN 366

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
 Identities = 154/322 (47%), Positives = 217/322 (67%)

Query:    65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLN 124
             D+L  YDFI++GAG  G  VANRL+E+ +W +LLLEAG     L D+P++   L LS ++
Sbjct:    55 DILDHYDFIVIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQLSKID 114

Query:   125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWS 184
             W YKTE     +CL ++G RC WP GK +GG+S++N MLY RG+K +YD+W  +GN  WS
Sbjct:   115 WQYKTEPSGT-SCLAMQGGRCNWPRGKVLGGSSVLNYMLYLRGSKHDYDNWEAMGNPSWS 173

Query:   185 YNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDY 244
             Y + L YFKK+E      L N+ YH T G++ V    Y+TP+  +F++AG+E GY   D 
Sbjct:   174 YRDALYYFKKSEDNTNQYLANTPYHATGGYLTVGEAPYHTPLAASFVEAGVEMGYENRDL 233

Query:   245 NGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 304
             NG+  TGF  AQ T  + SR S++K ++ P + R NL +  +S V +I+IDPVTK A GV
Sbjct:   234 NGEKMTGFMIAQGTTRRGSRCSTSKAFLRPARLRPNLHISMNSHVTRIMIDPVTKLAFGV 293

Query:   305 -LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQ 363
                  + + H + A KEV+LS G+ NSP+LLMLSG+GP++ L    IP+IK L VGENLQ
Sbjct:   294 EFVKDQKLYH-VRATKEVVLSGGSVNSPQLLMLSGVGPRKELAKHRIPLIKELSVGENLQ 352

Query:   364 EHLAMAGLTFLVNQPIGLLQDR 385
             +H+ + GLTFLVNQP+ ++++R
Sbjct:   353 DHIGLGGLTFLVNQPVSIVENR 374

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 151/326 (46%), Positives = 211/326 (64%)

Query:    54 QLEYKSSNKDQDLLL--EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDI 111
             Q + +  N D +++L  EYDFI+VGAG  GC +A RLSE P W++LLLEAG     ++D+
Sbjct:    42 QADVELENYDNNVILDSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPERLVMDV 101

Query:   112 PVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRN 171
             P++   L L  +NW Y+T+  D  ACL +   RC WP GK +GG+S++N M+YTRGN+R+
Sbjct:   102 PIVAHFLQLGEMNWKYRTQPSD-HACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRD 160

Query:   172 YDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFL 231
             YD W  LGN GWS+ +VLPYFKK E   + + +   Y G  G + V Y  + + + +AF+
Sbjct:   161 YDRWEALGNPGWSFKDVLPYFKKYEGSSVPDAEED-YVGRNGPVKVSYVNWRSKIAEAFV 219

Query:   232 QAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIK-KRCNLTVKDSSFVK 290
              A  + G    DYNG+ Q G A    T    +R SS + Y+ P+K KR NL V+ ++ V 
Sbjct:   220 DAAQQDGLKYRDYNGRIQNGVAFLHTTTRNSTRWSSNRAYLYPLKGKRSNLHVRKNALVT 279

Query:   291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
             K+LIDP TK A G++   +G   KILARKEVI+SAGA N+P+LLMLSG+GP +HL ++ I
Sbjct:   280 KVLIDPQTKTAYGIMVQTEGRMQKILARKEVIVSAGAINTPQLLMLSGVGPAKHLREVGI 339

Query:   351 PVIKNLRVGENLQEHLAMAGLTFLVN 376
               + +L VG NLQ+H A A +TF  N
Sbjct:   340 KPLADLAVGYNLQDHTAPA-VTFTTN 364

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)]

 Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
 Identities = 160/351 (45%), Positives = 221/351 (62%)

Query:    70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKT 129
             YDFIIVG G  GCT+A RLSE P+W + L+EAG   N +  +P+L  +L  +  NWGY +
Sbjct:    51 YDFIIVGGGAAGCTLAARLSENPNWSVFLIEAGGVENIVHQVPLLAAHLQSTASNWGYNS 110

Query:   130 EKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVL 189
               +   AC G+   +C  P GK +GGTS IN M+Y RGN+R++D WA  GN GWSY+EVL
Sbjct:   111 TPQR-HACRGMPDNKCALPRGKVLGGTSSINYMIYNRGNRRDFDAWAAAGNPGWSYDEVL 169

Query:   190 PYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQ 249
             PYF ++E  Q+  L++S YH   G + V+   + T +  A+++A  EAG+P  DYNG++Q
Sbjct:   170 PYFLRSEHAQLQGLEHSPYHNHSGPLSVEDVRHRTRLAHAYIRAAQEAGHPRTDYNGESQ 229

Query:   250 TGFARAQATLHKRSRRSSAKDYIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATI 308
              G +  QAT  K  R S+ + YI+PI+ +R NL +   + V ++LID  TK A GV  T 
Sbjct:   230 LGVSYVQATTLKGRRHSAFRAYIEPIRSRRHNLHILTLARVTRVLIDAATKSAYGVELTH 289

Query:   309 KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAM 368
             +G   K+ ARKE+ILSAGAFNSP+LLMLSGIGP+++L  + IP+IK L VG+ + +H+  
Sbjct:   290 QGRSFKVKARKEIILSAGAFNSPQLLMLSGIGPEDNLKAIGIPLIKALPVGKRMFDHMCH 349

Query:   369 AGLTFLVNQPIG--LLQDRLIKEMPVHFA-GKLRHSLSPITNSETLSTNIK 416
              G TF+ N   G  L   +L   +   F  G+    LS I   ETL T IK
Sbjct:   350 FGPTFVTNTT-GQTLFAAQLGAPVAKEFLLGRADTFLSSIGGVETL-TFIK 398

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 151/341 (44%), Positives = 215/341 (63%)

Query:    69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYK 128
             +YDF+++G G  G  VANRLSE+ +W +LLLEAG     + D+P L   L L+ L+W Y+
Sbjct:   295 QYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDWKYQ 354

Query:   129 TEKEDCRA-CLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNE 187
             T     R  C  +KG RC WP GK +GG+S++N M+Y RG+K +Y+ WA LGN GW Y+ 
Sbjct:   355 TTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHWASLGNPGWDYDS 414

Query:   188 VLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGK 247
             +L YF K+E ++   L  + YH T G++ V    + TP+  AFLQAG+E GY   D NG 
Sbjct:   415 MLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAPWRTPLSIAFLQAGIEMGYENRDINGA 474

Query:   248 TQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT 307
              QTGF   Q+T+ + +R S+ K +I P+++R N  V   +   +IL D   K+A GV   
Sbjct:   475 QQTGFMLTQSTIRRGARCSTGKAFIRPVRQRKNFDVLLHAEATRILFDK-QKRAIGVEYM 533

Query:   308 IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLA 367
               G  + +  R+EVI SAGA N+PKLLMLSG+GP EHL + NIPVI +L VG N+Q+H+ 
Sbjct:   534 RGGRKNVVFVRREVIASAGALNTPKLLMLSGVGPAEHLQEHNIPVISDLPVGNNMQDHVG 593

Query:   368 MAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNS 408
             + GLTF+V+ P+ + ++R  + +PV     LR    P+T S
Sbjct:   594 LGGLTFVVDAPLTVTRNRF-QTIPVSMEYILRER-GPMTFS 632

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030586 CG12539 [Drosophila melanogaster (taxid:7227)]

 Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
 Identities = 151/330 (45%), Positives = 207/330 (62%)

Query:    50 GIFEQLEYKSS-NKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYL 108
             G+   +E  +  N  +DL   YDFI++GAG  GCT+A RLSE P   + L+EAG   N  
Sbjct:    38 GLVNLIEQATRPNVPRDLS-NYDFIVIGAGAAGCTLAARLSENPQVSVALIEAGGVENIA 96

Query:   109 VDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGN 168
                PV+   L  +  NWGYK+  +   +C G+    C  P GK +GGTS IN M+Y RGN
Sbjct:    97 HLTPVVAGYLQQTSSNWGYKSVPQKL-SCHGMNNNECALPRGKILGGTSSINYMIYNRGN 155

Query:   169 KRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD 228
             +R++D WA  GN GWSY+EVLPYF ++E  Q+  L+ S YH   G + V+Y  + + M+D
Sbjct:   156 RRDFDAWAAAGNPGWSYDEVLPYFLRSEHAQLQGLEQSPYHNHSGPLSVEYVRFRSQMVD 215

Query:   229 AFLQAGMEAGYPLVDYNGKTQTGFARAQA-TLHKRSRRSSAKDYIDPIKK-RCNLTVKDS 286
             AF++A +E+G P  DYNG++Q G +  QA TL+ R R S+   YI P++  R NL +   
Sbjct:   216 AFVEASVESGLPRTDYNGESQLGVSYVQANTLNGR-RHSAYSAYIKPVRDLRSNLQIFTF 274

Query:   287 SFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 346
             S V +ILID  TK A GV    K   +   ARKEVILSAG+FNSP+LLMLSGIGP+++L 
Sbjct:   275 SQVTRILIDEATKSAYGVEFHYKNKAYTFKARKEVILSAGSFNSPQLLMLSGIGPEDNLR 334

Query:   347 DLNIPVIKNLRVGENLQEHLAMAGLTFLVN 376
              + IP+IK L VG+ + +H+   G TF+ N
Sbjct:   335 GIGIPLIKALPVGKRMFDHMCHFGPTFVTN 364

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 143/328 (43%), Positives = 209/328 (63%)

Query:    49 DGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYL 108
             D + EQ   +S + + DL   YDFI++G G  GC +A RLSE P W +LLLEAG     L
Sbjct:    37 DIVDEQHRVRSIHIE-DLRESYDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLL 95

Query:   109 VDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGN 168
             +D+P L      SP +W Y TE  D R CL ++ QRC WP  K +GG S IN M+Y RGN
Sbjct:    96 IDLPQLYPVFQRSPWDWKYLTEPSD-RYCLAMEDQRCFWPRAKVLGGCSSINAMMYIRGN 154

Query:   169 KRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD 228
             +R+YD WA LGN GW+Y+ +L YF+K E +++   ++S YHG  G I V+   + +P+LD
Sbjct:   155 RRDYDQWAALGNPGWNYDNILHYFRKLEDMRVPGFEHSPYHGHGGPISVERYRFPSPLLD 214

Query:   229 AFLQAGMEAG--YPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDS 286
              F++A  + G  +P  D+NG++QTGFA    +L    R S+ K YI    +R NL +   
Sbjct:   215 IFMRAAQQLGMVHPDGDFNGRSQTGFAPPHGSLRDGLRCSANKGYIRRSWQRPNLDIVLK 274

Query:   287 SFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 346
             +FV++I+IDP + +A GV+     + H + A++EVILSAG+  SP+LLM+SG+GP++ L 
Sbjct:   275 AFVERIVIDPQSHRAIGVIFEYGLLKHTVRAKREVILSAGSLASPQLLMVSGVGPRDQLE 334

Query:   347 DLNIPVIKNLR-VGENLQEHLAMAGLTF 373
                IPV+++L  VG NLQ+H++ +G  +
Sbjct:   335 PQGIPVVQHLPGVGGNLQDHISTSGAIY 362

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.99	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	511
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	1e-100
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	5e-79
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	1e-76
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	2e-46
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	6e-44
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	1e-15
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	6e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	0.002
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.004

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  311 bits (799), Expect = e-100
 Identities = 143/321 (44%), Positives = 188/321 (58%), Gaps = 19/321 (5%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLN 124
           EYD+II+GAG  GC +ANRLSE P   +LLLEAG   + +++ + +P  L   L     N
Sbjct: 5   EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYN 64

Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW 183
           W Y+TE E       +  +R   P GK +GG+S IN M+Y RGN  +YD+WA+L G  GW
Sbjct: 65  WAYETEPEP-----HMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGW 119

Query: 184 SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY-TEYNTPMLDAFLQAGMEAGYPLV 242
           SY + LPYFKKAE     E     Y G  G + V        P+  AF++AG++AGYP  
Sbjct: 120 SYADCLPYFKKAETRDGGE---DDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRT 176

Query: 243 -DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKA 301
            D NG  Q GF     T+    R S+A+ Y+DP  KR NLT+   +   +IL +   K+A
Sbjct: 177 DDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--KRA 234

Query: 302 CGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGE 360
            GV     G      AR+EVILSAGA NSP+LL LSGIGP EHL +L IPV+ +L  VGE
Sbjct: 235 VGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGE 294

Query: 361 NLQEHLAMAGLTFLVNQPIGL 381
           NLQ+HL +  + +   QP+ L
Sbjct: 295 NLQDHLEVY-IQYECKQPVSL 314

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  256 bits (656), Expect = 5e-79
 Identities = 126/329 (38%), Positives = 185/329 (56%), Gaps = 19/329 (5%)

Query: 65  DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG-HYFNYLVDIPVLNTNLILSP- 122
           ++ +EYD++IVG+G  G  +A RLS+     +L+LEAG      L+ +P     L+  P 
Sbjct: 3   EMKMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPR 61

Query: 123 LNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNY 181
            +WG++TE E       L+G+   WP GK +GG+S IN M+Y RG+  ++D WA+  G  
Sbjct: 62  YDWGFRTEPEP-----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAP 116

Query: 182 GWSYNEVLPYFKKAERIQISELQNSS-YHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYP 240
           GW Y++VLPYFK+AE +     Q+   +HG  G + V       P+  AF++AG + G+P
Sbjct: 117 GWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFP 176

Query: 241 LV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299
              D NG  Q GF     T+    R S+A+ Y+ P  KR NLT+   + V++IL++    
Sbjct: 177 TTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--D 234

Query: 300 KACGVLATIK--GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIP-VIKNL 356
           +A GV   I   G     +A +EV+L+AGA NSPKLL+LSGIGP +HL +  I  V +  
Sbjct: 235 RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLP 294

Query: 357 RVGENLQEHL---AMAGLTFLVNQPIGLL 382
            VG+NLQ+HL        T   N  +  L
Sbjct: 295 GVGQNLQDHLEIYVAFEATEPTNDSVLSL 323

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  250 bits (640), Expect = 1e-76
 Identities = 128/318 (40%), Positives = 170/318 (53%), Gaps = 18/318 (5%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLNWG 126
           D+II+G G  G  +A RLSE     +L+LEAG   + ++ L+ +P  L         NW 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWSY 185
           Y+TE E       +  +R     GK +GG+S IN M+Y RGN  +Y+ WAK  G   W Y
Sbjct: 61  YETEPEP-----HMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDY 115

Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLV-DY 244
            + LPY+K+ E     E     Y G  G I V     + P+  AF++AG+EAGY    D 
Sbjct: 116 ADCLPYYKRLETTFGGE---KPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDV 172

Query: 245 NGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 304
           NG  Q GF    +T+H   R S+A+ Y+ P  KR NL V+  +FV KI  +    +A GV
Sbjct: 173 NGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGV 230

Query: 305 LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQ 363
                G      A KEVILSAGA NSP+LL LSGIG  EHL +L I    +L  VGENLQ
Sbjct: 231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQ 290

Query: 364 EHLAMAGLTFLVNQPIGL 381
           +HL +  +     QP+ L
Sbjct: 291 DHLEVY-VQHACKQPVSL 307

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score =  160 bits (408), Expect = 2e-46
 Identities = 74/234 (31%), Positives = 104/234 (44%), Gaps = 39/234 (16%)

Query: 142 GQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQI 200
           G+R   P+G  VGG S +N     R      D+WA   G  GW Y++ LPY  K E    
Sbjct: 16  GRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE---- 71

Query: 201 SELQNSSYHGTQGFIGVDYT-EYNTPMLDAFLQAGMEAGYPLV----DYNGKTQTGFARA 255
                       G +GV       +P+  A L+A  E GYP+     + NG    GF   
Sbjct: 72  ------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGL 119

Query: 256 QATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--GIDH 313
                 +   S+A+ ++ P  +R NL +   +  +KI+I     +A GV A     GI  
Sbjct: 120 GCPTGAKQ--STARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKR 176

Query: 314 KILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLA 367
            I A KEV+++AGA N+P LL+ SG+G   H             VG+NLQ H  
Sbjct: 177 LITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLHPV 218

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score =  161 bits (409), Expect = 6e-44
 Identities = 100/306 (32%), Positives = 143/306 (46%), Gaps = 27/306 (8%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTN-LIL-----SPLN 124
           D ++VG G  GC VA RLSE P   + +LEAG  +     +P   T+ L L     SP+ 
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWS 184
           W Y  E  D         +      G+ +GG+  +N   + R    ++D W   G   WS
Sbjct: 62  WRYGVELTD------GPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPG---WS 112

Query: 185 YNEVLPYFKKAERIQISELQ-NSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYP-LV 242
           +++VLP+F+  E     +L  +   HGT G I V  T     +  AF+ A + AG+  + 
Sbjct: 113 WDDVLPHFRAIET----DLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIA 168

Query: 243 DYNGKT---QTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299
           D NG      TG       +    R S+A  Y+ P  KR NLTV+  + V +IL      
Sbjct: 169 DLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFS--GT 226

Query: 300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVG 359
           +A GV   +     + L    V+L AGA  S  LL+LSGIGP E L    I V+ +L VG
Sbjct: 227 RAVGVEV-LGDGGPRTLRADRVVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVG 285

Query: 360 ENLQEH 365
            +  +H
Sbjct: 286 SDFVDH 291

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 92/372 (24%), Positives = 144/372 (38%), Gaps = 76/372 (20%)

Query: 16  MLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIV 75
            L+    L+   +S+S     +   Y      +   F      SS+   D    YD+I+V
Sbjct: 4   KLFLFLLLLCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDS--AYDYIVV 61

Query: 76  GAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCR 135
           G G  GC +A  LS+  ++ +LLLE G        +P  N N+             E+  
Sbjct: 62  GGGTAGCPLAATLSQ--NFSVLLLERG-------GVPFGNANVSFL----------ENFH 102

Query: 136 ACLGLKGQRCP---WPSGKGV--------GGTSLINTMLYTRGNKRNYDDWAKLGNYGWS 184
             L           + S  GV        GG + IN   Y+R + R           GW 
Sbjct: 103 IGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWD 156

Query: 185 YNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY---TEYNTPMLDAFLQAGMEAGYPL 241
                           ++L N SY   +  I V +     +   + D+ L+ G+      
Sbjct: 157 ----------------AKLVNESYPWVERQI-VHWPKVAPWQAALRDSLLEVGVSP---- 195

Query: 242 VDYNGKTQTGF--ARAQATLHKRS-RRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT 298
             +NG T       +   T+     RR +A + +        L V   + V+KI+ D   
Sbjct: 196 --FNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPN-KLRVLLHATVQKIVFDTSG 252

Query: 299 K--KACGVLATIK--GIDHKILARK---EVILSAGAFNSPKLLMLSGIGPQEHLNDLNIP 351
           K  +A GV+   +        L+     E+ILSAGA  SP++L+LSGIGP++ L    IP
Sbjct: 253 KRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIP 312

Query: 352 VI-KNLRVGENL 362
           V+  N  VG+ +
Sbjct: 313 VVLHNEHVGKGM 324

Length = 587

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
           D +IVG GP G  +A  L+     K+ L+EA 
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEAT 32

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLE 100
           +YD +I+G G  G   A  LSE  P   + LLE
Sbjct: 3   DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35

Length = 429

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)

Query: 74  IVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           IVGAG  G   A  L++     +L+LE     
Sbjct: 1   IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDRI 31

Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	511
KOG1238|consensus	623		100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PLN02785	587	Protein HOTHEAD	100.0
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.93
COG2081	408	Predicted flavoproteins [General function predicti	99.89
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.87
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.71
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.61
PRK07121	492	hypothetical protein; Validated	99.57
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.57
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.56
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.53
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.52
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.51
PRK08274	466	tricarballylate dehydrogenase; Validated	99.51
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.44
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.43
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.43
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.42
PRK07395	553	L-aspartate oxidase; Provisional	99.42
PRK06175	433	L-aspartate oxidase; Provisional	99.42
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.41
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.4
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.4
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.39
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.39
PRK07804	541	L-aspartate oxidase; Provisional	99.38
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.37
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.37
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.37
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.36
PRK12839	572	hypothetical protein; Provisional	99.36
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.35
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.35
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.35
PLN02815	594	L-aspartate oxidase	99.34
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.33
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.33
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.32
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.32
PLN02661	357	Putative thiazole synthesis	99.31
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.31
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.3
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.3
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
COG0579	429	Predicted dehydrogenase [General function predicti	99.29
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.29
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.29
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.29
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.28
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.27
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.27
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.26
PRK08275	554	putative oxidoreductase; Provisional	99.25
PRK09077	536	L-aspartate oxidase; Provisional	99.25
PRK08071	510	L-aspartate oxidase; Provisional	99.24
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.24
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.24
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.23
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.22
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.2
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.2
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.16
PRK05257	494	malate:quinone oxidoreductase; Validated	99.16
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.16
PRK07512	513	L-aspartate oxidase; Provisional	99.16
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.16
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.15
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.15
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	99.14
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.13
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.13
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.12
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.11
PRK08401	466	L-aspartate oxidase; Provisional	99.11
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.05
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.05
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.05
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.04
KOG2820|consensus	399		99.01
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	99.0
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.98
PRK10157	428	putative oxidoreductase FixC; Provisional	98.97
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.97
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.95
COG3573	552	Predicted oxidoreductase [General function predict	98.92
KOG0042|consensus	680		98.92
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.91
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.91
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.89
PRK10015	429	oxidoreductase; Provisional	98.88
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.86
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.82
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.8
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.79
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.76
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.74
KOG2415|consensus	621		98.73
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.72
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.71
PRK06185	407	hypothetical protein; Provisional	98.7
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.65
KOG2844|consensus	856		98.62
KOG4254|consensus	561		98.61
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.6
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.6
KOG2853|consensus	509		98.6
KOG1298|consensus	509		98.56
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.56
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.54
PRK06847	375	hypothetical protein; Provisional	98.53
PRK07208	479	hypothetical protein; Provisional	98.53
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.53
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.53
KOG2404|consensus	477		98.52
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.51
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.51
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	98.51
PLN02985	514	squalene monooxygenase	98.5
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.49
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.49
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.49
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.49
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.48
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.48
PRK08244	493	hypothetical protein; Provisional	98.48
PRK06184	502	hypothetical protein; Provisional	98.48
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.48
PRK11445	351	putative oxidoreductase; Provisional	98.47
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.46
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.45
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.45
PRK07045	388	putative monooxygenase; Reviewed	98.45
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.45
PRK06116	450	glutathione reductase; Validated	98.45
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.44
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.43
PRK06370	463	mercuric reductase; Validated	98.43
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.43
PLN02697	529	lycopene epsilon cyclase	98.43
PRK06834	488	hypothetical protein; Provisional	98.43
PRK06126	545	hypothetical protein; Provisional	98.42
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.42
PRK09126	392	hypothetical protein; Provisional	98.42
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.42
PRK08013	400	oxidoreductase; Provisional	98.41
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.41
PRK07190	487	hypothetical protein; Provisional	98.41
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.4
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.4
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.4
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.4
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.39
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.39
KOG2665|consensus	453		98.38
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.38
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.38
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.37
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.37
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.36
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.33
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.33
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.32
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.31
PLN02463	447	lycopene beta cyclase	98.31
PRK07588	391	hypothetical protein; Provisional	98.3
KOG1399|consensus	448		98.3
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.29
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.28
PRK07233	434	hypothetical protein; Provisional	98.28
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.28
PLN02507	499	glutathione reductase	98.27
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.27
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.26
PRK08163	396	salicylate hydroxylase; Provisional	98.26
PRK06753	373	hypothetical protein; Provisional	98.25
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.25
PRK14694	468	putative mercuric reductase; Provisional	98.24
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	98.23
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.22
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.22
PLN02546	558	glutathione reductase	98.21
PTZ00367	567	squalene epoxidase; Provisional	98.2
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.2
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.19
PRK07538	413	hypothetical protein; Provisional	98.19
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.19
PRK07236	386	hypothetical protein; Provisional	98.18
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.17
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.17
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.16
PTZ00058	561	glutathione reductase; Provisional	98.15
PRK06996	398	hypothetical protein; Provisional	98.14
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.09
PRK10262	321	thioredoxin reductase; Provisional	98.08
PRK05868	372	hypothetical protein; Validated	98.05
PRK06475	400	salicylate hydroxylase; Provisional	98.04
PLN02487	569	zeta-carotene desaturase	98.04
KOG2960|consensus	328		98.03
PRK08294	634	phenol 2-monooxygenase; Provisional	98.02
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.0
KOG2311|consensus	679		98.0
PRK09897	534	hypothetical protein; Provisional	98.0
PRK14727	479	putative mercuric reductase; Provisional	97.99
KOG2852|consensus	380		97.98
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.98
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.97
PLN02612	567	phytoene desaturase	97.97
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.95
KOG1335|consensus	506		97.94
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.89
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.83
PRK07846	451	mycothione reductase; Reviewed	97.81
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.74
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.73
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.71
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.7
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.7
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.69
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.68
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.65
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	97.64
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.64
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.64
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.62
PLN02576	496	protoporphyrinogen oxidase	97.62
KOG0029|consensus	501		97.61
TIGR02053	463	MerA mercuric reductase. This model represents the	97.58
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.57
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.56
PTZ00052	499	thioredoxin reductase; Provisional	97.56
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.55
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.54
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	97.53
PLN02268	435	probable polyamine oxidase	97.51
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.51
KOG0405|consensus	478		97.51
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.49
PRK13748	561	putative mercuric reductase; Provisional	97.48
PLN02676	487	polyamine oxidase	97.47
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.45
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.45
KOG0404|consensus	322		97.41
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.41
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.38
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.34
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.33
COG3349	485	Uncharacterized conserved protein [Function unknow	97.32
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.28
PLN02568	539	polyamine oxidase	97.26
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.23
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.21
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.14
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.13
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.13
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.13
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.12
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.05
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.04
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.02
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.02
PRK12831	464	putative oxidoreductase; Provisional	97.0
TIGR02053	463	MerA mercuric reductase. This model represents the	96.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.97
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	96.96
KOG2614|consensus	420		96.94
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	96.94
PRK09564	444	coenzyme A disulfide reductase; Reviewed	96.9
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	96.9
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.89
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.87
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.87
PRK06370	463	mercuric reductase; Validated	96.85
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.84
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.83
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.82
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	96.82
PLN02529	738	lysine-specific histone demethylase 1	96.81
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.81
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.8
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.74
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.73
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.71
PRK10262	321	thioredoxin reductase; Provisional	96.66
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.66
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	96.64
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.64
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.64
KOG4716|consensus	503		96.62
PLN02852	491	ferredoxin-NADP+ reductase	96.6
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.6
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	96.58
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.56
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	96.52
KOG0685|consensus	498		96.48
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.47
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.47
PRK12831	464	putative oxidoreductase; Provisional	96.47
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	96.45
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.45
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	96.45
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.43
PRK13512	438	coenzyme A disulfide reductase; Provisional	96.4
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.38
PRK14727	479	putative mercuric reductase; Provisional	96.37
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.35
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.34
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.34
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.29
PLN02507	499	glutathione reductase	96.28
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.25
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	96.23
PRK14694	468	putative mercuric reductase; Provisional	96.22
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.2
PTZ00188	506	adrenodoxin reductase; Provisional	96.18
PRK07846	451	mycothione reductase; Reviewed	96.15
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.15
PRK06116	450	glutathione reductase; Validated	96.15
PLN03000	881	amine oxidase	96.14
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	96.12
KOG1276|consensus	491		96.12
PTZ00058	561	glutathione reductase; Provisional	96.03
PLN02976	1713	amine oxidase	95.98
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	95.96
KOG3855|consensus	481		95.96
PRK13748	561	putative mercuric reductase; Provisional	95.92
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	95.77
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	95.71
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.71
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.71
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.57
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.55
PTZ00153	659	lipoamide dehydrogenase; Provisional	95.5
PRK13984	604	putative oxidoreductase; Provisional	95.42
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.42
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.37
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	95.33
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.27
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.23
PTZ00052	499	thioredoxin reductase; Provisional	95.2
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	95.17
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.16
PLN02546	558	glutathione reductase	95.15
KOG1800|consensus	468		95.09
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.93
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	94.87
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	94.78
KOG1336|consensus	478		94.37
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.28
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	94.26
KOG4405|consensus	547		94.12
KOG2755|consensus	334		93.94
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	93.72
KOG3851|consensus	446		93.39
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.36
KOG1439|consensus	440		93.33
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.12
KOG0399|consensus	2142		92.74
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	92.64
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	92.24
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	91.98
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.26
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	91.21
KOG2403|consensus	642		90.74
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	90.63
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.13
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	90.09
PRK13984	604	putative oxidoreductase; Provisional	90.02
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	89.82
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.49
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	89.24
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	88.87
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	88.87
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	88.51
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	88.19
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.14
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.99
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	87.92
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	87.62
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.26
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.94
KOG3923|consensus	342		86.52
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	86.42
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	86.4
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.35
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.32
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	86.26
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	86.01
KOG1346|consensus	659		85.98
PRK06719	157	precorrin-2 dehydrogenase; Validated	85.94
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.27
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	84.76
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	84.35
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	84.01
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.96
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	83.31
PRK04148	134	hypothetical protein; Provisional	83.17
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	82.65
PRK15116	268	sulfur acceptor protein CsdL; Provisional	82.2
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.19
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	82.17
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.94
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	81.7
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	81.3
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	81.19
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	81.03
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	80.97
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	80.92
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	80.64
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	80.11
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	80.02

>KOG1238|consensus

Probab=100.00  E-value=3.4e-69  Score=564.57  Aligned_cols=399  Identities=41%  Similarity=0.678  Sum_probs=351.7

Q ss_pred             cccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           64 QDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        64 ~~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      .+...+|||||||||.|||++|.+|+|++.++|||||||+.+....++|.....++.+.+||.|.++|++ ++|..+.++
T Consensus        52 ~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~-~ac~~m~~~  130 (623)
T KOG1238|consen   52 SELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQ-HACLAMSED  130 (623)
T ss_pred             cccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccCh-hhhhhhcCC
Confidence            4567789999999999999999999999999999999999988888999777888899999999999999 999999999


Q ss_pred             ccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCC
Q psy760          144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN  223 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~  223 (511)
                      .|.|||||+|||+|.+|+|+|.|+++.|||+|++.|+++|+|++++|||+|+|....+.....++|+..|++.++...+.
T Consensus       131 ~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~  210 (623)
T KOG1238|consen  131 RCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYP  210 (623)
T ss_pred             ceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceecccccc
Confidence            99999999999999999999999999999999999999999999999999999998877666669999999999999999


Q ss_pred             ChHHHHHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHHhhHhhhh-CCCcEEEeCceEEEEEEcCCCCcEE
Q psy760          224 TPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK-RCNLTVKDSSFVKKILIDPVTKKAC  302 (511)
Q Consensus       224 ~~~~~~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~-r~gv~v~~~t~V~~I~~d~~~~ra~  302 (511)
                      .+....+.++.+++|.+..|+|+..+.|+.+.+.+.++|.|+++..+|+.++.. |+|+++..++.|++|.+|..+.++.
T Consensus       211 ~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~  290 (623)
T KOG1238|consen  211 NNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAK  290 (623)
T ss_pred             CchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEE
Confidence            999999999999999888999999999999999999999999999999999876 8899999999999999998778999


Q ss_pred             EEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCCCC
Q psy760          303 GVLATIK-GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIG  380 (511)
Q Consensus       303 GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~~~  380 (511)
                      ||++.++ +++++++|+||||||||+++||||||+|||||++||+++|||++.|+| ||+|||||+..+ +...+.++.+
T Consensus       291 gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~-~~~~~~~~~~  369 (623)
T KOG1238|consen  291 GVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP-GFVFSTNPVE  369 (623)
T ss_pred             EEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc-eeeecCCCcc
Confidence            9999988 799999999999999999999999999999999999999999999999 999999999984 4443444544


Q ss_pred             cchhhhhcchHHHHHhHHhcCCCCcccCcccce--eeeehhccchhhhhccCCCeEEEEecC------------------
Q psy760          381 LLQDRLIKEMPVHFAGKLRHSLSPITNSETLST--NIKTIFAAHHDKINKSGEDITIRLIKD------------------  440 (511)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  440 (511)
                      .....+.  ....+.+|+..++||+++.+ .+.  +++......    ....+|+++.+...                  
T Consensus       370 ~~~~~~~--~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~----~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y  442 (623)
T KOG1238|consen  370 LSLIRLV--GITTVGQYLEGGSGPLASPG-VETLGFINTVSSNL----SLDWPDIELHFVAGSLSSDGLTALRKALGEIY  442 (623)
T ss_pred             ccccccc--cchHHHHHHHcCCCCcccCc-ceeeEEeccccccC----cCCCCCeeEEeccccccccchhhhhhhcchHH
Confidence            4443433  56789999999999999876 333  254443221    23356666555421                  


Q ss_pred             ---------cceeEEEeccCCCCCCCceEEEecC--CCchhHH
Q psy760          441 ---------LIGILIALALPRKFSTWGKFQVSSS--FVVPVWF  472 (511)
Q Consensus       441 ---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~  472 (511)
                               .....|...+.+|+|+ |++.+.|.  ++-|.+-
T Consensus       443 ~~~~~~~~~~~~~~i~~~~l~P~Sr-G~l~L~s~nP~~~P~I~  484 (623)
T KOG1238|consen  443 QALFGELTNSDSFVIFPKLLRPKSR-GRLKLRSTNPRDNPLIT  484 (623)
T ss_pred             HHhhhhhhcCceeEEeehhcCCCcc-ceEEecCCCCCcCceec
Confidence                     0015678889999999 99999998  8888764

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=3.3e-53  Score=461.67  Aligned_cols=384  Identities=40%  Similarity=0.615  Sum_probs=297.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC---Cccccccccccc-ccCCCCcCCCccccccccccccCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF---NYLVDIPVLNTN-LILSPLNWGYKTEKEDCRACLGLKG  142 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~---~~~~~ip~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~  142 (511)
                      ..+|||||||||++|+++|.+|||++|.+|||||+|+..   ......|..... .....++|.|.+.|++     ...+
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~-----~~~~   77 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP-----HMNN   77 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC-----CCCC
Confidence            457999999999999999999999789999999999753   233445543222 2245678999998887     5667


Q ss_pred             CccccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccC-
Q psy760          143 QRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYT-  220 (511)
Q Consensus       143 ~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~-  220 (511)
                      +.+.+++||++||+|.+|+|.|.|+.+.||+.|++. |+++|+|++++|||+++|++...   +..+++..||+.+..+ 
T Consensus        78 ~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~~~  154 (560)
T PRK02106         78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRGK  154 (560)
T ss_pred             CeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeCCC
Confidence            789999999999999999999999999999999988 88999999999999999988732   2346888899988765 


Q ss_pred             CCCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCC
Q psy760          221 EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK  299 (511)
Q Consensus       221 ~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~  299 (511)
                      ....+..+.+.++++++|++. .+.++....|++.+..++..|.|.++..+||.++.++.|++|++++.|++|++++  +
T Consensus       155 ~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~--~  232 (560)
T PRK02106        155 PGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--K  232 (560)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeC--C
Confidence            456778889999999999987 4677777778887777888899999999999987778999999999999999985  7


Q ss_pred             cEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCC
Q psy760          300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQP  378 (511)
Q Consensus       300 ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~  378 (511)
                      +|+||++...+...++.+.|+||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+.. .+.+.++++
T Consensus       233 ~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~  311 (560)
T PRK02106        233 RAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQP  311 (560)
T ss_pred             eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCC
Confidence            9999999876544455555799999999999999999999999999999999999999 99999999998 788888765


Q ss_pred             CCcch--hhhhcchHHHHHhHHhcCCCCcccCcccceeeeehhccchhhhhccCCCeEEEEecC-----------cceeE
Q psy760          379 IGLLQ--DRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKD-----------LIGIL  445 (511)
Q Consensus       379 ~~~~~--~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~  445 (511)
                      .....  ....  ......+|+..++|+++.......+.......      ...+++++.+.+.           ..+..
T Consensus       312 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  383 (560)
T PRK02106        312 VSLYPALKWWN--KPKIGAEWLFTGTGLGASNHFEAGGFIRSRAG------VDWPNIQYHFLPVAIRYDGSNAVKGHGFQ  383 (560)
T ss_pred             cccccccchhh--hhHHHHHHHhcCCCCccccccceeeEEecCCC------CCCCCeEEEEeeccccccCCCCCCCCeEE
Confidence            43211  0111  22234577777889876533222221111000      0123343333221           01334


Q ss_pred             EEeccCCCCCCCceEEEecC--CCchh
Q psy760          446 IALALPRKFSTWGKFQVSSS--FVVPV  470 (511)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~--~~~p~  470 (511)
                      +...+.+|+++ |+++++++  ++.|.
T Consensus       384 ~~~~~~~P~sr-G~V~L~s~d~~~~P~  409 (560)
T PRK02106        384 AHVGPMRSPSR-GSVKLKSADPRAHPS  409 (560)
T ss_pred             EEEEecCCcce-EEEEEeCCCCccCce
Confidence            55567899999 99999876  66664

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=2.1e-52  Score=452.90  Aligned_cols=380  Identities=36%  Similarity=0.538  Sum_probs=294.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC---ccccccccccc-ccCCCCcCCCccccccccccccCCCCccc
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN---YLVDIPVLNTN-LILSPLNWGYKTEKEDCRACLGLKGQRCP  146 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~---~~~~ip~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~~~~~  146 (511)
                      ||||||||+||+++|.+|||+++.+|||||+|+...   .....|..... .....++|.|.+.|+.     ...++.+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~   75 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP-----HMNNRRVG   75 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC-----CCCCceEe
Confidence            899999999999999999994447999999997532   33444543222 2244578999999988     66778899


Q ss_pred             cCCcceecccccccccccccCCcccchHHhh-cCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCCh
Q psy760          147 WPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTP  225 (511)
Q Consensus       147 ~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~  225 (511)
                      |++||+|||+|.+|+|+|.|+.+.||+.|++ .|.++|+|++++|||+++|+....   ...+|+..|++.+..++...+
T Consensus        76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~  152 (532)
T TIGR01810        76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNP  152 (532)
T ss_pred             eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCH
Confidence            9999999999999999999999999999998 588999999999999999988653   235789999999988777788


Q ss_pred             HHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEE
Q psy760          226 MLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGV  304 (511)
Q Consensus       226 ~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV  304 (511)
                      ..+.+.++++++|++. .+.++....|++.+...+..|.|.++..+|+.++.++.|++|+++++|++|++++  ++|+||
T Consensus       153 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~--~ra~GV  230 (532)
T TIGR01810       153 LFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEG--NRATGV  230 (532)
T ss_pred             HHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecC--CeEEEE
Confidence            8899999999999987 4677666778887777778899999999999887778999999999999999985  799999


Q ss_pred             EEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCCCCcch
Q psy760          305 LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGLLQ  383 (511)
Q Consensus       305 ~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~~~~~~  383 (511)
                      ++..+++..++.+.|+||||||+++||+||++|||||+++|+++||+++.++| ||+|||||+.. .+.+.+.++.....
T Consensus       231 ~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~~  309 (532)
T TIGR01810       231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLYP  309 (532)
T ss_pred             EEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCccccc
Confidence            99876544455555799999999999999999999999999999999999999 99999999997 78888876543211


Q ss_pred             h-hhhcchHHHHHhHHhcCCCCcccCccccee-eeehhccchhhhhccCCCeEEEEecC-----------cceeEEEecc
Q psy760          384 D-RLIKEMPVHFAGKLRHSLSPITNSETLSTN-IKTIFAAHHDKINKSGEDITIRLIKD-----------LIGILIALAL  450 (511)
Q Consensus       384 ~-~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~  450 (511)
                      . .... ...+..+|+..+.|++........+ ++...       ....+++++.+.+.           ..+..+...+
T Consensus       310 ~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (532)
T TIGR01810       310 SLNWLK-QPFIGAQWLFGRKGAGASNHFEGGGFVRSND-------DVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGP  381 (532)
T ss_pred             ccchhh-hhHHHHHHHhcCCCCccccccceeEEEecCC-------CCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEee
Confidence            0 0000 1223446777788887654332222 21110       01124444443221           0123455567


Q ss_pred             CCCCCCCceEEEecC--CCchh
Q psy760          451 PRKFSTWGKFQVSSS--FVVPV  470 (511)
Q Consensus       451 ~~~~~~~~~~~~~~~--~~~p~  470 (511)
                      .+|+|+ |++++++.  ++.|.
T Consensus       382 ~~P~sr-G~V~L~s~dp~~~P~  402 (532)
T TIGR01810       382 MYSNSR-GHVKIKSKDPFEKPE  402 (532)
T ss_pred             cCCCCc-eEEEecCCCCccCce
Confidence            889999 99999776  55553

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=1.8e-51  Score=413.72  Aligned_cols=288  Identities=40%  Similarity=0.670  Sum_probs=233.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccc-cccccCCCCcCCCccccccccccccCCCCccccC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVL-NTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWP  148 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~-~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~~  148 (511)
                      |||||||||++|+++|.+||++++.+|||||||+........+.. ........++|.+.+.++.     ..+++...++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~   75 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP-----FLNGRTINWP   75 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE-----CTTTTSEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc-----ccccceeeee
Confidence            899999999999999999999545799999999876543322211 2223345678888888777     6788889999


Q ss_pred             CcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccCCCCCCCCccccc-ccCCCCChH
Q psy760          149 SGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGV-DYTEYNTPM  226 (511)
Q Consensus       149 rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v-~~~~~~~~~  226 (511)
                      +|++|||+|.+|+|++.|+.+.||+.|... |.++|+|+++.+||+++|+...+.   ...++..+++.+ .......+.
T Consensus        76 ~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~  152 (296)
T PF00732_consen   76 RGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSPM  152 (296)
T ss_dssp             EB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCTH
T ss_pred             cceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCHH
Confidence            999999999999999999999999999987 888999999999999999887764   557788888888 455566778


Q ss_pred             HHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEE
Q psy760          227 LDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVL  305 (511)
Q Consensus       227 ~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~  305 (511)
                      ...+.++++++|++. .+.+.....|++.....|..+.|.++..+||.++.++.|++|+++++|++|++++++++|+||+
T Consensus       153 ~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~  232 (296)
T PF00732_consen  153 NQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVE  232 (296)
T ss_dssp             HHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEE
T ss_pred             HHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeee
Confidence            899999999999994 5777777888887776788999999999999998888899999999999999986568999999


Q ss_pred             EEECCe---EEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCccchhhhhcc
Q psy760          306 ATIKGI---DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHL  366 (511)
Q Consensus       306 ~~~~g~---~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~PVG~nl~DH~  366 (511)
                      +.+.+.   .+.+.+ |+||||||+++||+||++|||||.++|+++||+++.++|||+||||||
T Consensus       233 ~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~  295 (296)
T PF00732_consen  233 YVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP  295 (296)
T ss_dssp             EEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred             eeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence            996433   344545 689999999999999999999999999999999999999999999997

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-48  Score=419.72  Aligned_cols=384  Identities=35%  Similarity=0.572  Sum_probs=306.5

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc-ccccccccccccCC-CCcCCCccccccccccccCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY-LVDIPVLNTNLILS-PLNWGYKTEKEDCRACLGLKG  142 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~-~~~ip~~~~~~~~~-~~~w~~~t~p~~~~~~~~~~~  142 (511)
                      .+..+|||||||+|.+|+++|.+|++ +|.+|+|||+|+.... ...+|......... ..+|.|.++++.     ...+
T Consensus         3 ~~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~   76 (542)
T COG2303           3 EMKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP-----HLRG   76 (542)
T ss_pred             cccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc-----CCCC
Confidence            45678999999999999999999995 9999999999986543 55667665555544 889999999988     8889


Q ss_pred             CccccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccC-CCCCCCCcccccccC
Q psy760          143 QRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQN-SSYHGTQGFIGVDYT  220 (511)
Q Consensus       143 ~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~-~~~~g~~G~l~v~~~  220 (511)
                      +.+.|+|||+|||+|.+|+|.|.|+++.||+.|.+. |.++|.|++++|||+++|+.......+ ...|+..||+.+...
T Consensus        77 r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~  156 (542)
T COG2303          77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP  156 (542)
T ss_pred             ccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC
Confidence            999999999999999999999999999999999876 789999999999999999976653322 458999999999887


Q ss_pred             CCCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCC
Q psy760          221 EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK  299 (511)
Q Consensus       221 ~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~  299 (511)
                      ....+..+.+.++..++|++. .++++....|++.+..++..|.|.++..+||.++.++.|++|++++.|++|++++  +
T Consensus       157 ~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~--~  234 (542)
T COG2303         157 RSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--D  234 (542)
T ss_pred             CCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEEC--C
Confidence            666889999999999999998 5788888889988888888999999999999999999999999999999999998  7


Q ss_pred             cEEEEEEEECCe--EEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEc
Q psy760          300 KACGVLATIKGI--DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVN  376 (511)
Q Consensus       300 ra~GV~~~~~g~--~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~  376 (511)
                      |++||++..++.  .....+.++||||||+++||+|||+||||+.+.+..+||.++.++| ||+|||||+.. .+.+...
T Consensus       235 r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~  313 (542)
T COG2303         235 RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEAT  313 (542)
T ss_pred             eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheecc
Confidence            999999986432  2344455699999999999999999999999999999999999999 99999999998 6777776


Q ss_pred             CCCCcchhhhhcchHHHHHhHHhcCCCCcccCcccceeeeehhccchhhhhccCCCeEEEEe---------cCcceeEEE
Q psy760          377 QPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLI---------KDLIGILIA  447 (511)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~  447 (511)
                      ...................+|...+.|+..+++....+.+....       ...+++++.+.         .+..+..+.
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~gf~~~~~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  386 (542)
T COG2303         314 EPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGPA-------GEYPDGQYHFAPLPLAIRAAGAEHGFTLH  386 (542)
T ss_pred             CccccccccccccccccceeEEeecCCCcccccccccccccCcc-------ccCCCcccccccccccccccccCCccEEe
Confidence            65411100000001122355666788888765433322222111       11223333331         112357888


Q ss_pred             eccCCCCCCCceEEEecC
Q psy760          448 LALPRKFSTWGKFQVSSS  465 (511)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~  465 (511)
                      ....++.++ |.+.+.+.
T Consensus       387 ~~~~rp~sr-g~v~~~~~  403 (542)
T COG2303         387 VGPMRPKSR-GSVTLRSP  403 (542)
T ss_pred             eccCCCccc-cceecCCC
Confidence            888999998 88888777

>PLN02785 Protein HOTHEAD

Probab=100.00  E-value=1.4e-45  Score=399.86  Aligned_cols=274  Identities=27%  Similarity=0.414  Sum_probs=212.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCccc
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCP  146 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~  146 (511)
                      ..+|||||||||+|||++|.+|++  +.+|||||+|+.......++... .+.....+|.|.+.+|.     ..+++.+.
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~-----~~~~~~~~  124 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQA-----FISTDGVI  124 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCcccccc-----ccCCCcee
Confidence            457999999999999999999999  48999999997532111111111 12234578999988887     56678899


Q ss_pred             cCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChH
Q psy760          147 WPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPM  226 (511)
Q Consensus       147 ~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~  226 (511)
                      ++|||+|||+|.+|+|.|.|+++.||+.      .+|+|+.+.+||++.|+....                  .+...+.
T Consensus       125 ~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~------------------~~~~~~~  180 (587)
T PLN02785        125 NARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH------------------WPKVAPW  180 (587)
T ss_pred             ccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc------------------CCCcChH
Confidence            9999999999999999999999999954      579999999999999875210                  1123466


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCC---ccceeeccccc--CCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCC--C
Q psy760          227 LDAFLQAGMEAGYPLVDYNGKT---QTGFARAQATL--HKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT--K  299 (511)
Q Consensus       227 ~~~~~~a~~~~G~~~~~~~~~~---~~G~~~~~~~~--~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~--~  299 (511)
                      ...+.+++.++|++.  +++..   ..|. ....++  ..|.|.++.. ++ +.+++.|++|++++.|++|++++++  +
T Consensus       181 ~~~~~~a~~e~G~~~--~n~~~~d~~~G~-~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~  255 (587)
T PLN02785        181 QAALRDSLLEVGVSP--FNGFTYDHVYGT-KVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRP  255 (587)
T ss_pred             HHHHHHHHHHcCCCc--cCCCCCCCccce-eeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCc
Confidence            789999999999974  23211   1111 111223  3467777665 44 5677899999999999999998632  3


Q ss_pred             cEEEEEEEE-CCeEEEE----EeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEE
Q psy760          300 KACGVLATI-KGIDHKI----LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTF  373 (511)
Q Consensus       300 ra~GV~~~~-~g~~~~v----~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~  373 (511)
                      +|+||++.+ +|+..++    +++|+||||||+++||+|||+|||||+++|+++||||+.|+| ||+||+||+.. .+.+
T Consensus       256 ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~  334 (587)
T PLN02785        256 RATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFV  334 (587)
T ss_pred             eEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEE
Confidence            899999975 4544333    256799999999999999999999999999999999999999 99999999997 6888


Q ss_pred             EEcCC
Q psy760          374 LVNQP  378 (511)
Q Consensus       374 ~~~~~  378 (511)
                      .++.+
T Consensus       335 ~~~~~  339 (587)
T PLN02785        335 PSKAP  339 (587)
T ss_pred             EeCCC
Confidence            76654

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.93  E-value=5.9e-25  Score=234.92  Aligned_cols=273  Identities=21%  Similarity=0.198  Sum_probs=165.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccc---------------c----cc-----------
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNT---------------N----LI-----------  119 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~---------------~----~~-----------  119 (511)
                      |||||||+|++|+++|..|++ .|.+|+|||++..... ... +...               .    ++           
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSF-LKI-GAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVI   77 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCC-Ccc-cccccccccccccHHHHHHHHhhhccccccccccCCc
Confidence            799999999999999999999 7999999999876531 000 0000               0    00           


Q ss_pred             --CCCCcCCCccccccccc-cccCC---CCcccc---CCcceecccccccccccccCCcccchHHhhcCCCCC--Chhch
Q psy760          120 --LSPLNWGYKTEKEDCRA-CLGLK---GQRCPW---PSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW--SYNEV  188 (511)
Q Consensus       120 --~~~~~w~~~t~p~~~~~-~~~~~---~~~~~~---~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~l  188 (511)
                        ..+..|.-.  |.. +. ..+-+   +-..++   .|-+.+||+|.+|++.+.|+++.+. .|  .+ .+|  +|+++
T Consensus        78 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL  150 (544)
T TIGR02462        78 PTLDPTAWSAS--IES-FFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEW  150 (544)
T ss_pred             CCCCccccccC--CCc-ceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHH
Confidence              000112110  000 00 00000   001112   2457899999999999999998642 22  12 588  89999


Q ss_pred             HHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHHHHHHHHHHcCC-CCC-CCCCCCccceeecccccCCCcccc
Q psy760          189 LPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY-PLV-DYNGKTQTGFARAQATLHKRSRRS  266 (511)
Q Consensus       189 ~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~-~~~-~~~~~~~~G~~~~~~~~~~g~r~~  266 (511)
                      .|||.++|++.....          .. ...+.......+.+.+.++  |. ... ...+     +..  ..|..+.+++
T Consensus       151 ~PyY~~Ae~~~gv~g----------~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~PlA-----~~~--~~c~~~ak~s  210 (544)
T TIGR02462       151 DRLYTKAESLIGTST----------DQ-FDESIRHNLVLRKLQDEYK--GQRDFQPLPLA-----CHR--RTDPTYVEWH  210 (544)
T ss_pred             HHHHHHHHHHhCCCC----------Cc-CCCcccchhHHHHHHHHhc--cccccccCchh-----hhc--cCCCccceec
Confidence            999999999876532          10 0000011122222333332  22 110 0001     000  0122233444


Q ss_pred             hhHHhhHhhh----hCCCcEEEeCceEEEEEEcCCC-CcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          267 SAKDYIDPIK----KRCNLTVKDSSFVKKILIDPVT-KKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       267 ~~~~~L~~~~----~r~gv~v~~~t~V~~I~~d~~~-~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      +....+..+.    ++.|++|++++.|++|++++++ ++|++|++.+  +++.++++|+ .||||||+++||+||++|++
T Consensus       211 ~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~  289 (544)
T TIGR02462       211 SADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGF  289 (544)
T ss_pred             CCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCC
Confidence            3323343332    4678999999999999998754 5899999885  5777889997 79999999999999999999


Q ss_pred             CCccccccCCCCcccc--Cc-cchhhhhcccCceEEEEEcCC
Q psy760          340 GPQEHLNDLNIPVIKN--LR-VGENLQEHLAMAGLTFLVNQP  378 (511)
Q Consensus       340 Gp~~~L~~~gi~vv~~--~P-VG~nl~DH~~~~~~~~~~~~~  378 (511)
                      +......  |+  ..+  .+ ||+||+||+.. .+.+.+.++
T Consensus       290 ~~~~~p~--gl--~Nss~~g~VGRnlmdh~~~-~~~~~~~~~  326 (544)
T TIGR02462       290 GQLGRPD--PT--NPPPLLPSLGRYITEQSMT-FCQIVLSTE  326 (544)
T ss_pred             CCCcCCC--Cc--CCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence            8533221  11  111  25 99999999987 566666544

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.89  E-value=1.9e-24  Score=216.29  Aligned_cols=309  Identities=16%  Similarity=0.117  Sum_probs=203.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcccc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPW  147 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~  147 (511)
                      +.+||||||||+||+.||..+++ .|++|+|+|+++....+..++++++|+.++...               .++--.++
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~---------------~~~~ls~~   65 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA---------------PDEFLSRN   65 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccceeEecCCCCcccccccc---------------HHHHHHhC
Confidence            36999999999999999999999 899999999999999999999999998874322               11111112


Q ss_pred             CCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHH
Q psy760          148 PSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPML  227 (511)
Q Consensus       148 ~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~  227 (511)
                      |      |.+.+-...+.|+.+.|+..|.+.                                .+-+++......++|..
T Consensus        66 p------~~~~fl~sal~~ft~~d~i~~~e~--------------------------------~Gi~~~e~~~Gr~Fp~s  107 (408)
T COG2081          66 P------GNGHFLKSALARFTPEDFIDWVEG--------------------------------LGIALKEEDLGRMFPDS  107 (408)
T ss_pred             C------CcchHHHHHHHhCCHHHHHHHHHh--------------------------------cCCeeEEccCceecCCc
Confidence            2      222222225667777777777431                                11223333333333321


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE
Q psy760          228 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT  307 (511)
Q Consensus       228 ~~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~  307 (511)
                      .                                   +.+.....|...+++.|++|+++++|.+|..++.     +..+.
T Consensus       108 d-----------------------------------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-----~f~l~  147 (408)
T COG2081         108 D-----------------------------------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-----GFRLD  147 (408)
T ss_pred             c-----------------------------------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-----eEEEE
Confidence            1                                   3344445565667889999999999999988763     45555


Q ss_pred             ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc--cchhhhhcccCceEEEEEcCCCCcchhh
Q psy760          308 IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR--VGENLQEHLAMAGLTFLVNQPIGLLQDR  385 (511)
Q Consensus       308 ~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P--VG~nl~DH~~~~~~~~~~~~~~~~~~~~  385 (511)
                      ..+.+ +|+|+ .+|||+|+..-|++= -.|.|= ..++++||+|+...|  |+..+.....- .+......++......
T Consensus       148 t~~g~-~i~~d-~lilAtGG~S~P~lG-stg~gy-~iA~~~G~~I~~~rpalvpft~~~~~~~-~l~gls~~~v~~~v~~  222 (408)
T COG2081         148 TSSGE-TVKCD-SLILATGGKSWPKLG-STGFGY-PIARQFGHTITPLRPALVPFTLDESFLE-RLAGLSLKSVPLSVTA  222 (408)
T ss_pred             cCCCC-EEEcc-EEEEecCCcCCCCCC-CCchhh-HHHHHcCCccccCccccCCccCCHHHHH-HhcCCcccceEEEEec
Confidence            43332 69998 599999998788531 112211 126789999988888  88877632211 2222222222222111


Q ss_pred             hhcchHHHHHhHHhcCCCCcccCccccee---eeehhccchhhhhcc-CCCeEEEEecCcceeEEEeccCCCCCCCceEE
Q psy760          386 LIKEMPVHFAGKLRHSLSPITNSETLSTN---IKTIFAAHHDKINKS-GEDITIRLIKDLIGILIALALPRKFSTWGKFQ  461 (511)
Q Consensus       386 ~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (511)
                      -..          ...+|.+..||.+.+|   ++.|.+-. + .++. ...+.|++.++.+.+++...+   +..++++.
T Consensus       223 ~~g----------~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~~~~i~iDllP~~~~~~l~~~l---~~~~~~ks  287 (408)
T COG2081         223 GKG----------ITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKGGATLSIDLLPDVDAEELLREL---RRANPKKS  287 (408)
T ss_pred             CCC----------ceeecceEEEecCCcHHHHHHHHHHHH-H-hccCCCceEEEecCCCCCHHHHHHHH---HhhChhhH
Confidence            000          2456899999999998   77765444 3 4444 789999999987654444444   55679999


Q ss_pred             EecC--CCchhHHH---HHhhccccccccceeeee
Q psy760          462 VSSS--FVVPVWFW---LVQNGCQMSGKWSNLYWY  491 (511)
Q Consensus       462 ~~~~--~~~p~~~~---~~~~~~~~~~~~~~~~~~  491 (511)
                      +.+.  -.+|.|+|   +.+.|| .+..|+++-+-
T Consensus       288 lkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~  321 (408)
T COG2081         288 LKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPK  321 (408)
T ss_pred             HHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHH
Confidence            9888  55999998   999999 89999998763

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.87  E-value=1.2e-24  Score=226.33  Aligned_cols=305  Identities=19%  Similarity=0.178  Sum_probs=176.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCC-CCcCCCccccccccccccCCCCccccC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILS-PLNWGYKTEKEDCRACLGLKGQRCPWP  148 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~-~~~w~~~t~p~~~~~~~~~~~~~~~~~  148 (511)
                      |||||||||+||++||+.|++ .|.+|+||||++....+..+.+.++|+.++ ..+..      .             | 
T Consensus         1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~------~-------------~-   59 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPS------E-------------F-   59 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGG------G-------------E-
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCcccccceeecCCCCccccccccchh------h-------------H-
Confidence            899999999999999999999 899999999999888777777777777653 11110      0             0 


Q ss_pred             CcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHH
Q psy760          149 SGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD  228 (511)
Q Consensus       149 rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~  228 (511)
                          ..+        |.+  ..++-.               +.+++                              -..+
T Consensus        60 ----~~~--------~~~--~~~f~~---------------~~l~~------------------------------f~~~   80 (409)
T PF03486_consen   60 ----LSG--------YGR--NPKFLK---------------SALKR------------------------------FSPE   80 (409)
T ss_dssp             ----ECS---------TB--TTTCTH---------------HHHHH------------------------------S-HH
T ss_pred             ----hhh--------ccc--chHHHH---------------HHHhc------------------------------CCHH
Confidence                000        000  000000               00000                              0113


Q ss_pred             HHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE
Q psy760          229 AFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI  308 (511)
Q Consensus       229 ~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~  308 (511)
                      .+++.++++|++.....    .|..+ |.+    .+..+....|...+++.|++|+++++|++|..++  +.+..|++ .
T Consensus        81 d~~~ff~~~Gv~~~~~~----~gr~f-P~s----~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~-~  148 (409)
T PF03486_consen   81 DLIAFFEELGVPTKIEE----DGRVF-PKS----DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKT-K  148 (409)
T ss_dssp             HHHHHHHHTT--EEE-S----TTEEE-ETT------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEE-T
T ss_pred             HHHHHHHhcCCeEEEcC----CCEEC-CCC----CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeec-c
Confidence            34455555565542111    11111 111    1334455566666788999999999999999876  45556665 2


Q ss_pred             CCeEEEEEeCcEEEEccCCCCcHHH------HHhcCCCCccccccCCCCccccCc--cchhhhhccc----CceEEEEEc
Q psy760          309 KGIDHKILARKEVILSAGAFNSPKL------LMLSGIGPQEHLNDLNIPVIKNLR--VGENLQEHLA----MAGLTFLVN  376 (511)
Q Consensus       309 ~g~~~~v~A~k~VILAAGa~~SP~L------L~~SGIGp~~~L~~~gi~vv~~~P--VG~nl~DH~~----~~~~~~~~~  376 (511)
                      +++  .+.|+ .||||+|+...|++      +..        ++++||+|+...|  |+....+...    ..++.....
T Consensus       149 ~~~--~~~a~-~vILAtGG~S~p~~GS~G~gy~~--------a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~  217 (409)
T PF03486_consen  149 NGG--EYEAD-AVILATGGKSYPKTGSDGSGYRI--------AKKLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAV  217 (409)
T ss_dssp             TTE--EEEES-EEEE----SSSGGGT-SSHHHHH--------HHHTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEE
T ss_pred             Ccc--cccCC-EEEEecCCCCccccCCCcHHHHH--------HHHCCCcEecCCCccCCeeecchhhhhhhhCCCceeeE
Confidence            333  78897 69999999877763      333        6789999999988  8777776643    113322211


Q ss_pred             CCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee---eeehhccchhhhhccCCCeEEEEecCcceeEEEeccCCC
Q psy760          377 QPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRK  453 (511)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (511)
                        .........           ...+|.++.+|++.+|   +++|....+.+..+....|.|+|.++.+.+++.+.|.+.
T Consensus       218 --~~~~~~~~~-----------~~~~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~id~~p~~~~e~l~~~l~~~  284 (409)
T PF03486_consen  218 --ISLLDGKKK-----------ASETGELLFTHYGISGPAILQLSRFIARALNKKKKVEISIDFLPDLSEEELEELLQER  284 (409)
T ss_dssp             --EEEE-ECTC-----------EEEEEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEEESSTTS-HHHHHHHHHHH
T ss_pred             --EEEeccCCc-----------cceeeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHH
Confidence              111101111           4678999999999998   888887777777677899999999997777788888887


Q ss_pred             CCCCceEEEecC--CCchhHHH---HHhhcc-ccccccceeee
Q psy760          454 FSTWGKFQVSSS--FVVPVWFW---LVQNGC-QMSGKWSNLYW  490 (511)
Q Consensus       454 ~~~~~~~~~~~~--~~~p~~~~---~~~~~~-~~~~~~~~~~~  490 (511)
                      +...+++.+.+.  -.+|.|||   +.+.++ +.+.+|+++-.
T Consensus       285 ~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~  327 (409)
T PF03486_consen  285 KEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSK  327 (409)
T ss_dssp             HHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-H
T ss_pred             HHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCH
Confidence            776778887776  45999999   888999 99999998754

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR00275 flavoprotein, HI0933 family

Probab=99.71  E-value=8.6e-19  Score=183.61  Aligned_cols=217  Identities=20%  Similarity=0.155  Sum_probs=137.5

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccc
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN  346 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~  346 (511)
                      .....+...+++.|+++++++.|++|..++  + ...|+.  +++  ++.++ .||+|+|+...|++ -.+|-|.. .++
T Consensus       106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~-~~~v~~--~~~--~i~ad-~VIlAtG~~s~p~~-gs~G~g~~-la~  175 (400)
T TIGR00275       106 DVLDALLNELKELGVEILTNSKVKSIKKDD--N-GFGVET--SGG--EYEAD-KVILATGGLSYPQL-GSTGDGYE-IAE  175 (400)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEecC--C-eEEEEE--CCc--EEEcC-EEEECCCCcccCCC-CCCcHHHH-HHH
Confidence            344455566677899999999999997654  2 233443  333  57887 69999999766642 11222111 245


Q ss_pred             cCCCCccccCc--cchhhhhcccCceEEEEEcCCC-CcchhhhhcchHHHHHhHHhcCCCCcccCccccee---eeehhc
Q psy760          347 DLNIPVIKNLR--VGENLQEHLAMAGLTFLVNQPI-GLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IKTIFA  420 (511)
Q Consensus       347 ~~gi~vv~~~P--VG~nl~DH~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~~~~  420 (511)
                      ++|++++...|  |...+.++... .+.+...+.. .....+..          .....|.+..+|.+.+|   +++|.+
T Consensus       176 ~lG~~i~~~~P~l~~l~~~~~~~~-~l~Gv~~~~~~~~~~~~~~----------~~~~~g~llft~~gisG~~vl~~s~~  244 (400)
T TIGR00275       176 SLGHTIVPPVPALVPLTLDESFLK-ELSGISLDGVVLSLVNGKK----------VLEEFGDLLFTHFGLSGPAILDLSAF  244 (400)
T ss_pred             HCCCCEecccceEeEEEeCCcccc-cCCCCcCccEEEEecCCcE----------EEeecccEEEECCCcCHHHHHHHHHH
Confidence            67887776666  55555554221 1221111110 00000000          13567999999999998   677765


Q ss_pred             cchhhhhccCCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhHHH---HHhhccccccccceeeee----
Q psy760          421 AHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVWFW---LVQNGCQMSGKWSNLYWY----  491 (511)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~---~~~~~~~~~~~~~~~~~~----  491 (511)
                      .++.+....+..|.|+|.++.+.+++...|++.+...+++.+.+.  .-+|.+||   +.+.||+.+++|++|..-    
T Consensus       245 ~~~~~~~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (400)
T TIGR00275       245 AARALLKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKK  324 (400)
T ss_pred             HHHHhhcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHH
Confidence            555543334678999999997666777777776666688888776  34999999   888999999999998741    


Q ss_pred             ----ecceEEecccccc
Q psy760          492 ----TDGFEVDLSGSFG  504 (511)
Q Consensus       492 ----~~~~~~~~~~~~~  504 (511)
                          .-.|.+...|..|
T Consensus       325 l~~~lk~~~~~~~g~~~  341 (400)
T TIGR00275       325 LVQLLKNWPFTVSGTRG  341 (400)
T ss_pred             HHHHHhCCEEEecCcCc
Confidence                2345555555444

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.61  E-value=1.9e-14  Score=155.33  Aligned_cols=60  Identities=23%  Similarity=0.283  Sum_probs=47.3

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECC-eEEEEEeCcEEEEccCCCCcHH
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKG-IDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g-~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ..|...+++.|++|+++++|++|+.++  ++++||++...+ +..+++|+ .||+|+|++..+.
T Consensus       194 ~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~  254 (506)
T PRK06481        194 DGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSK-AVVVTTGGFGANK  254 (506)
T ss_pred             HHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCH
Confidence            344455677899999999999998654  789999887543 55678996 7999999987654

>PRK07121 hypothetical protein; Validated

Probab=99.57  E-value=4.8e-14  Score=151.90  Aligned_cols=66  Identities=23%  Similarity=0.304  Sum_probs=52.6

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      ....|...+++.|++|+++++|++|+.+++ ++++||++..+++.+.++|+|.||||+|++...+-|
T Consensus       179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em  244 (492)
T PRK07121        179 LMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREM  244 (492)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHH
Confidence            344555566788999999999999998753 789999988766677899955899999999765433

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.57  E-value=5.2e-14  Score=153.25  Aligned_cols=60  Identities=18%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      .|...+++.|++|+++++|++|+.++  ++|+||.+..+++++.+.|+|.||||+|+|....
T Consensus       222 ~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~  281 (564)
T PRK12845        222 GLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM  281 (564)
T ss_pred             HHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence            44455677899999999999999754  7999998877777778889889999999998765

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.56  E-value=7.3e-14  Score=152.93  Aligned_cols=63  Identities=22%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ...|...+++.|++|++++.|++|+.+++ ++|+||.+..+++.+.++|+|.||||||+|....
T Consensus       216 ~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~  278 (584)
T PRK12835        216 VARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDHDM  278 (584)
T ss_pred             HHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccCCH
Confidence            33455667788999999999999999754 7999999987777788999878999999998754

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.53  E-value=1.1e-13  Score=150.90  Aligned_cols=63  Identities=16%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ...|...+++.|++|+++++|++|+.++  ++|+||++..+++.+.++|+|.||||||++...+=
T Consensus       211 ~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~e  273 (557)
T PRK12844        211 IGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAE  273 (557)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccCCHH
Confidence            3345455678899999999999999875  79999999877777789997789999999988653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.52  E-value=2.6e-13  Score=146.81  Aligned_cols=63  Identities=16%  Similarity=0.377  Sum_probs=50.8

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH-HHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK-LLM  335 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~-LL~  335 (511)
                      ++..+.++.|++|+++++|++|+.++  ++|+||++..+++.+.|+|+|.||||||++...+ ++.
T Consensus       179 l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~  242 (513)
T PRK12837        179 FLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA  242 (513)
T ss_pred             HHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence            34444455699999999999999875  7999999887777788999878999999997554 443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.51  E-value=9.4e-14  Score=146.48  Aligned_cols=62  Identities=23%  Similarity=0.400  Sum_probs=48.4

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      ...|...+++.|++|+.+++|++|+.++  ++|+||++.  .+++.++|+|+ .||||+|++.. .++
T Consensus       144 ~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~  207 (417)
T PF00890_consen  144 IEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL  207 (417)
T ss_dssp             HHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred             HHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence            3345555677899999999999999986  799999999  67888899997 89999999988 444

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.51  E-value=1.8e-13  Score=146.60  Aligned_cols=70  Identities=21%  Similarity=0.304  Sum_probs=53.9

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE-ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~-~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      ...|...+++.|++|+++++|++|+.++  ++++||++. .+++...++|+ .||||+|++.+++.++..-.++
T Consensus       134 ~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~~  204 (466)
T PRK08274        134 VNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWGQ  204 (466)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcCC
Confidence            3345555677899999999999999865  789999885 44555678896 7999999998887666654443

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.44  E-value=9.8e-13  Score=145.03  Aligned_cols=59  Identities=20%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      .|...+.+.|++|+.++.|++|+.+++ ++|+||.+..  +++...+.|+ .||||+|++...
T Consensus       192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~~  252 (635)
T PLN00128        192 TLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAH-STILATGGYGRA  252 (635)
T ss_pred             HHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCccc
Confidence            444445567999999999999998743 7999998753  5667788896 899999998753

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.43  E-value=4.9e-12  Score=137.79  Aligned_cols=200  Identities=18%  Similarity=0.177  Sum_probs=112.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcccc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPW  147 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~  147 (511)
                      .+|||||||||+.|+++|+.||+ .|.+|+||||+....                                         
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~-rG~~V~LlEk~d~~~-----------------------------------------   42 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCAL-RGLRCILVERHDIAT-----------------------------------------   42 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEECCCCCC-----------------------------------------
Confidence            36999999999999999999999 899999999974321                                         


Q ss_pred             CCcceecccccccccccccCCc---ccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCC
Q psy760          148 PSGKGVGGTSLINTMLYTRGNK---RNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNT  224 (511)
Q Consensus       148 ~rGk~lGGsS~~n~~~~~r~~~---~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~  224 (511)
                             |+|..|.++...+..   .+.......      .++ ...+.+....       . ++.. |.+.+..+....
T Consensus        43 -------GaS~~~~gllh~g~ry~~~~~~~~~~~------~~e-~~~l~~~a~~-------~-~~~~-g~l~~~~~~~~~   99 (546)
T PRK11101         43 -------GATGRNHGLLHSGARYAVTDAESAREC------ISE-NQILKRIARH-------C-VEPT-DGLFITLPEDDL   99 (546)
T ss_pred             -------CcccccccceeccchhcccCHHHHHHH------HHH-HHHHHHhchH-------h-hccc-CCceEEeccccH
Confidence                   233333333221111   111110000      000 0111111100       0 1112 224444433333


Q ss_pred             hHHHHHHHHHHHcCCCCCCCC-----------CCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEE
Q psy760          225 PMLDAFLQAGMEAGYPLVDYN-----------GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKIL  293 (511)
Q Consensus       225 ~~~~~~~~a~~~~G~~~~~~~-----------~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~  293 (511)
                      .....+.+.+.+.|++...++           .....|..+++...-   ........+...+.+.|++++++++|++|.
T Consensus       100 ~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~v---dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~  176 (546)
T PRK11101        100 AFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTV---DPFRLTAANMLDAKEHGAQILTYHEVTGLI  176 (546)
T ss_pred             HHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEE---CHHHHHHHHHHHHHhCCCEEEeccEEEEEE
Confidence            445566677778887642111           112233333332111   111111122234567899999999999998


Q ss_pred             EcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          294 IDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       294 ~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++  ++++||++.+  +++..+|+|+ .||+|||+ ++.+++.+.|+
T Consensus       177 ~~~--~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~  220 (546)
T PRK11101        177 REG--DTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL  220 (546)
T ss_pred             EcC--CeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence            875  6899998864  3444589997 69999997 58888877664

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.43  E-value=2.2e-13  Score=139.40  Aligned_cols=199  Identities=23%  Similarity=0.259  Sum_probs=110.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCccccCCc
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSG  150 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~~rG  150 (511)
                      ||||||||++|+++|++|++ .|++|+|||++....                                            
T Consensus         1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~~~~--------------------------------------------   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGDIGS--------------------------------------------   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSSTTS--------------------------------------------
T ss_pred             CEEEECcCHHHHHHHHHHHH-CCCeEEEEeeccccc--------------------------------------------
Confidence            89999999999999999999 899999999994211                                            


Q ss_pred             ceecccccccccccccCC--cccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHH
Q psy760          151 KGVGGTSLINTMLYTRGN--KRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD  228 (511)
Q Consensus       151 k~lGGsS~~n~~~~~r~~--~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~  228 (511)
                          |+|..+++++....  ..+ ..+.++      ......++++.......   ...++ ..|.+.+...+......+
T Consensus        36 ----~aS~~~~g~~~~~~~~~~~-~~~~~l------~~~~~~~~~~~~~~~~~---~~~~~-~~g~l~~~~~~~~~~~~~  100 (358)
T PF01266_consen   36 ----GASGRSGGLVRPGISSYPD-PQYARL------ARESVEFWRELAEEYGI---PVGFR-PCGSLYLAEDEEDAESLE  100 (358)
T ss_dssp             ----SGGGSSSEEEECSGSHHSS-HHHHHH------HHHHHHHHHHHHHHTTS---SCEEE-ECEEEEEESSHHHHHHHH
T ss_pred             ----ccccccccccccccccccc-ccccch------hhhhccchhhhhhhcCc---ccccc-cccccccccchhhhhhcc
Confidence                33333433443331  111 011110      01122233333222211   11111 234455544333334455


Q ss_pred             HHHHHHHHcCCCCCCCC-----------CCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCC
Q psy760          229 AFLQAGMEAGYPLVDYN-----------GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPV  297 (511)
Q Consensus       229 ~~~~a~~~~G~~~~~~~-----------~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~  297 (511)
                      .+.+.++..|++.....           .....+..+.+....  .........|...+++.|++|+++++|++|..++ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~--i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-  177 (358)
T PF01266_consen  101 RLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGV--IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG-  177 (358)
T ss_dssp             HHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEE--EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-
T ss_pred             ccccccccccccccccchhhhhhhhcccccchhhhhccccccc--ccccchhhhhHHHHHHhhhhccccccccchhhcc-
Confidence            66777778887432111           011111111111100  1123334455556677899999999999999987 


Q ss_pred             CCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          298 TKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       298 ~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                       ++++||++.  +.  .++|+ .||+|+|+ ++++|+...|+
T Consensus       178 -~~v~gv~~~--~g--~i~ad-~vV~a~G~-~s~~l~~~~~~  212 (358)
T PF01266_consen  178 -GRVTGVRTS--DG--EIRAD-RVVLAAGA-WSPQLLPLLGL  212 (358)
T ss_dssp             -TEEEEEEET--TE--EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred             -ccccccccc--cc--ccccc-eeEecccc-cceeeeecccc
Confidence             677777753  22  48897 69999996 78888888765

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.42  E-value=4.8e-12  Score=138.20  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=52.5

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      ..|...+++.|++|++++.|++|+.++  ++|+||++..+++.+.++|++.||||+|++.+.+-|+
T Consensus       212 ~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~  275 (557)
T PRK07843        212 AGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMR  275 (557)
T ss_pred             HHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHH
Confidence            344455677899999999999999875  7999999876777778999768999999998866443

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.42  E-value=1.7e-12  Score=141.30  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=45.6

Q ss_pred             hhHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCC
Q psy760          271 YIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       271 ~L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      .|...+ ++.|++|++++.|++|+.++++++|+||.+..+++.+.++|+ .||||||++.
T Consensus       139 ~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~  197 (553)
T PRK07395        139 TLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAG-AVILATGGGG  197 (553)
T ss_pred             HHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcC-EEEEcCCCCc
Confidence            344434 356999999999999998753378999988777776678885 7999999974

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.42  E-value=2.6e-12  Score=136.11  Aligned_cols=57  Identities=18%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             hhHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760          271 YIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       271 ~L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .|...+ ++.|++|++++.|++|+.++  ++++||....+++.+.++|+ .||||+|++..
T Consensus       133 ~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~~  190 (433)
T PRK06175        133 ILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSK-VTILATGGIGG  190 (433)
T ss_pred             HHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcC-eEEEccCcccc
Confidence            343333 45699999999999998765  78999877666665678996 79999999764

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.41  E-value=1.6e-12  Score=142.19  Aligned_cols=56  Identities=18%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~  329 (511)
                      .|...+.+.|++|++++.|++|+.++  ++|+||.+..  +++.+.++|+ .||||||++.
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  198 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG  198 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence            44444556799999999999999875  8999998874  4556688895 8999999987

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.40  E-value=1.8e-12  Score=142.23  Aligned_cols=60  Identities=13%  Similarity=0.105  Sum_probs=47.2

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+.+.|++|++++.|++|+.+++ ++|+||...  .+++.+.++|+ .||||||++..
T Consensus       146 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  207 (588)
T PRK08958        146 LHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR  207 (588)
T ss_pred             HHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence            33444445678999999999999998643 799999874  35666788995 89999999864

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.40  E-value=7.5e-12  Score=133.01  Aligned_cols=63  Identities=22%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ....|...+++.|++|+++++|++|+.+++ ++++||++... ++...+.++ .||+|+|++....
T Consensus       132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~  195 (439)
T TIGR01813       132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNK  195 (439)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCH
Confidence            344555567788999999999999998653 78999988754 334456675 7999999987643

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.39  E-value=7.4e-12  Score=137.36  Aligned_cols=62  Identities=21%  Similarity=0.278  Sum_probs=50.4

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      .|...+++.|++|+++++|++|+.++  ++++||++..+++.+.++|+|.||||+|++....-+
T Consensus       222 ~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        222 RLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence            45556778899999999999999875  799999987666666789955899999999775544

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.39  E-value=3.1e-12  Score=141.39  Aligned_cols=56  Identities=14%  Similarity=0.235  Sum_probs=45.7

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      |...+++.|++|++++.|++|+.++  ++|+||.+..  +++.+.+.|+ .||||||++..
T Consensus       176 L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  233 (640)
T PRK07573        176 LSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTAD-AVVLATGGYGN  233 (640)
T ss_pred             HHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence            3334567899999999999999875  7999998874  4565678886 79999999875

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.38  E-value=7.3e-12  Score=136.27  Aligned_cols=60  Identities=17%  Similarity=0.251  Sum_probs=45.9

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE-----ECCeEEEEEeCcEEEEccCCCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-----IKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~-----~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      ....|...+++.|++|+.++.|++|+.+++ ++|+||.+.     ..+....++|+ .||+|+|++.
T Consensus       146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~  210 (541)
T PRK07804        146 VQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLG  210 (541)
T ss_pred             HHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCC
Confidence            334555566677899999999999998753 689999876     22334578885 7999999976

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.37  E-value=1e-11  Score=136.15  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ...|...+++.|++|++++.|++|+.++  ++|+||++..+++...+.|+|.||||+|++...+=
T Consensus       224 ~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~e  286 (578)
T PRK12843        224 IGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQ  286 (578)
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcccCHH
Confidence            3345556678899999999999998764  79999998877777788886689999999988643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.37  E-value=7.2e-12  Score=137.75  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+++.|++|++++.|++|+.+++ ++|+||.+.  .+++.+.+.|+ .||||||++..
T Consensus       152 ~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  213 (598)
T PRK09078        152 LHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR  213 (598)
T ss_pred             HHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence            33454556678999999999999998753 689999875  35666788995 79999999875

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.37  E-value=1.3e-11  Score=134.75  Aligned_cols=36  Identities=33%  Similarity=0.582  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..++||||||+|.||+++|+.+++ .|.+|+||||++
T Consensus         2 ~~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~   37 (549)
T PRK12834          2 AMDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN   37 (549)
T ss_pred             CccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            457999999999999999999999 899999999986

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.36  E-value=1.2e-11  Score=145.33  Aligned_cols=53  Identities=25%  Similarity=0.355  Sum_probs=43.9

Q ss_pred             CCcEEEeCceEEEEEEcCC----C---CcEEEEEEEE----CCeEEEEEeCcEEEEccCCCCcHH
Q psy760          279 CNLTVKDSSFVKKILIDPV----T---KKACGVLATI----KGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~----~---~ra~GV~~~~----~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      .|++|+++++|++|+.+++    +   ++|+||++..    +++.+.++|+ .||||||+|....
T Consensus       560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~  623 (1167)
T PTZ00306        560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH  623 (1167)
T ss_pred             CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence            5999999999999998752    1   3899999875    4666789995 8999999998754

>PRK12839 hypothetical protein; Provisional

Probab=99.36  E-value=1.1e-11  Score=135.60  Aligned_cols=62  Identities=15%  Similarity=0.121  Sum_probs=48.5

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      .|...+++.|++|++++.|++|+.+++ ++|+||++...+....+.+.|.||||||+|....-
T Consensus       219 ~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~  280 (572)
T PRK12839        219 RLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVD  280 (572)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHH
Confidence            344556778999999999999988643 79999998754444566776689999999987543

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.35  E-value=1.5e-11  Score=134.89  Aligned_cols=61  Identities=16%  Similarity=0.283  Sum_probs=48.6

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      |...+++.|++|++++.|++|+.++  ++|+||++...+....+.++|.||||+|++....-+
T Consensus       220 L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~  280 (574)
T PRK12842        220 LAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFSHDLAR  280 (574)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHH
Confidence            4444667899999999999999875  799999987644555788877899999998755443

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.35  E-value=4.2e-12  Score=139.91  Aligned_cols=60  Identities=15%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+++.|++|++++.|++|+.+++ ++|+||.+..  +++.+.++|+ .||||+|++..
T Consensus       169 ~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  230 (617)
T PTZ00139        169 LHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR  230 (617)
T ss_pred             HHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence            33455556678999999999999998433 7999998753  5666788896 79999999864

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.35  E-value=6.7e-12  Score=134.16  Aligned_cols=204  Identities=13%  Similarity=0.056  Sum_probs=106.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcc
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRC  145 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~  145 (511)
                      ..++||||||||++|+++|++|++. +|.+|+|||++...                                        
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g----------------------------------------   61 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG----------------------------------------   61 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc----------------------------------------
Confidence            3469999999999999999999993 49999999997431                                        


Q ss_pred             ccCCcceecccccccccccccCCcccchHHhhc-CCCCC--ChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCC
Q psy760          146 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY  222 (511)
Q Consensus       146 ~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w--~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~  222 (511)
                              .|+|..|++...... ..+..+... +....  -+......++..+++......++.+.. .|.+.+...+.
T Consensus        62 --------~GaSgrn~G~~~~~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~l~~~~~i~~~~~~-~G~l~~a~~~~  131 (460)
T TIGR03329        62 --------AGASGRNGGCMLTWS-TKFFTLKRLFGEAEAARLVKASEQAVLEIAAFCEQHNIDAQLRL-DGTLYTATNPA  131 (460)
T ss_pred             --------cccccccCccccccc-cCHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc-CCEEEEecCHH
Confidence                    144444444322111 111111110 10000  000011112222222211122455543 57777665443


Q ss_pred             CChHHHHHHHHHHHcCCCC-CCCCCC---------CccceeecccccCCCcccc--hhHHhhHhhhhCCCcEEEeCceEE
Q psy760          223 NTPMLDAFLQAGMEAGYPL-VDYNGK---------TQTGFARAQATLHKRSRRS--SAKDYIDPIKKRCNLTVKDSSFVK  290 (511)
Q Consensus       223 ~~~~~~~~~~a~~~~G~~~-~~~~~~---------~~~G~~~~~~~~~~g~r~~--~~~~~L~~~~~r~gv~v~~~t~V~  290 (511)
                      .....+...+.+++.|++. ..++..         ...+..+.+    .+....  .....|...+++.|++|+++++|+
T Consensus       132 ~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~----~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~  207 (460)
T TIGR03329       132 QVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSP----VAASVQPGLLVRGLRRVALELGVEIHENTPMT  207 (460)
T ss_pred             HHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeC----CCeEECHHHHHHHHHHHHHHcCCEEECCCeEE
Confidence            4444556667777888752 222211         111111111    111112  222334455678899999999999


Q ss_pred             EEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       291 ~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      +|.. +  + ...|+. .+|   +++|+ .||+|+|++ ++.++
T Consensus       208 ~i~~-~--~-~~~v~t-~~g---~v~A~-~VV~Atga~-s~~l~  241 (460)
T TIGR03329       208 GLEE-G--Q-PAVVRT-PDG---QVTAD-KVVLALNAW-MASHF  241 (460)
T ss_pred             EEee-C--C-ceEEEe-CCc---EEECC-EEEEccccc-ccccC
Confidence            9963 2  2 223432 223   58897 699999985 44444

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02815 L-aspartate oxidase

Probab=99.34  E-value=1.1e-11  Score=135.59  Aligned_cols=53  Identities=15%  Similarity=0.186  Sum_probs=42.0

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCC--cEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTK--KACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~--ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ++.|++|++++.|++|+.+++++  +|+||.+..  +++.+.+.|+ .||||||++..
T Consensus       167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  223 (594)
T PLN02815        167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH  223 (594)
T ss_pred             hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence            34699999999999999865433  489998753  5666788895 89999999863

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.33  E-value=2.4e-11  Score=127.99  Aligned_cols=34  Identities=24%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +||||||||++|+++|++|++ .|++|+||||+..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            699999999999999999999 7999999999864

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.33  E-value=1.9e-11  Score=128.56  Aligned_cols=62  Identities=18%  Similarity=0.156  Sum_probs=44.8

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      |...+.+.|++++.+++|++|..+++ +++++|++.+ +   ++.|+ .||+|||++ ++.++...|+.
T Consensus       189 l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~-g---~i~a~-~vVvaagg~-~~~l~~~~g~~  250 (407)
T TIGR01373       189 YARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTR-G---FIGAK-KVGVAVAGH-SSVVAAMAGFR  250 (407)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCC-c---eEECC-EEEECCChh-hHHHHHHcCCC
Confidence            44556778999999999999976532 5666676532 3   58897 599999985 56677666653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=1.2e-11  Score=135.76  Aligned_cols=49  Identities=16%  Similarity=0.050  Sum_probs=40.1

Q ss_pred             CcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          280 NLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       280 gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ++++++++.|++|+.+++ ++|+||.+..  +++.+.+.|+ .||||||++..
T Consensus       151 ~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  201 (589)
T PRK08641        151 LVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI  201 (589)
T ss_pred             CcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence            489999999999998643 7999998874  4555678885 89999999875

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=1.7e-11  Score=134.52  Aligned_cols=60  Identities=18%  Similarity=0.340  Sum_probs=46.3

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ....|...+++.|++|++++.|++|+.++  ++|.||...  .+++.+.++|+ .||||+|++..
T Consensus       137 i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~  198 (575)
T PRK05945        137 ILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR  198 (575)
T ss_pred             HHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence            33445555667899999999999998875  789999864  25555678895 79999999753

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.32  E-value=2.4e-11  Score=132.54  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..|...+++.|++|++++.|++|+.+++ ++++||.+..  +++.+.++|+ .||||+|++..
T Consensus       138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~  198 (543)
T PRK06263        138 MGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ  198 (543)
T ss_pred             HHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence            3454556678999999999999998763 5699998764  5666688995 79999999863

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.32  E-value=1.9e-11  Score=134.04  Aligned_cols=50  Identities=26%  Similarity=0.381  Sum_probs=41.2

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..|+++++++.|++|+.++  ++|+||...  .+++.+.++|+ .||||+|++..
T Consensus       146 ~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~  197 (582)
T PRK09231        146 YPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR  197 (582)
T ss_pred             CCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence            3589999999999999875  799999874  35656688896 89999999763

>PLN02661 Putative thiazole synthesis

Probab=99.31  E-value=2.8e-11  Score=122.44  Aligned_cols=68  Identities=26%  Similarity=0.345  Sum_probs=48.1

Q ss_pred             hccccccccchhhhhhhhccccchhhccccCCCCC-------cc--cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEE
Q psy760           29 STSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKD-------QD--LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLL   99 (511)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVL   99 (511)
                      ..+++++..+|+...+.|..-.       +...++       +.  ...++||+|||+|++|+++|+.|++++|.+|+||
T Consensus        50 ~~~~~~~~~~~~~~~~~f~~~~-------e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~vi  122 (357)
T PLN02661         50 RSSSSSSTAPYDLNNFKFAPIK-------ESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAII  122 (357)
T ss_pred             ccccCCCCCCCccccccceech-------hhHhhccchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence            3445566777888777773222       222211       11  1236899999999999999999997468999999


Q ss_pred             cCCC
Q psy760          100 EAGH  103 (511)
Q Consensus       100 EaG~  103 (511)
                      ||+.
T Consensus       123 Ek~~  126 (357)
T PLN02661        123 EQSV  126 (357)
T ss_pred             ecCc
Confidence            9974

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.31  E-value=2.3e-11  Score=133.33  Aligned_cols=59  Identities=17%  Similarity=0.203  Sum_probs=46.1

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+++.|++++.++.|++|+.++  ++++||.+..  +++...++|+ .||||+|++..
T Consensus       132 ~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~  192 (566)
T TIGR01812       132 LHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR  192 (566)
T ss_pred             HHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence            3345555566799999999999999875  7999998753  4555678895 89999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>TIGR00551 nadB L-aspartate oxidase

Probab=99.30  E-value=3.2e-11  Score=129.86  Aligned_cols=59  Identities=15%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             HHhhHhhhhC-CCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKR-CNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r-~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+++ .|++|++++.|++|+.++  ++++||.+...++...++|+ .||+|+|++..
T Consensus       131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~-~VVlAtGG~~~  190 (488)
T TIGR00551       131 ITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHAD-AVVLATGGAGK  190 (488)
T ss_pred             HHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcC-EEEECCCcccC
Confidence            3345444554 799999999999998765  78999988765555578896 79999999764

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.30  E-value=6.4e-11  Score=124.08  Aligned_cols=64  Identities=17%  Similarity=0.149  Sum_probs=45.6

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      ...|...+++.|++++.+++|++|..++  +.+ .|+.  ++.  +++|+ .||+|+|+ +++.++...|+.+
T Consensus       152 ~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~--~~g--~i~ad-~vV~A~G~-~s~~l~~~~g~~~  215 (393)
T PRK11728        152 AEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRT--TQG--EYEAR-TLINCAGL-MSDRLAKMAGLEP  215 (393)
T ss_pred             HHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEE--CCC--EEEeC-EEEECCCc-chHHHHHHhCCCC
Confidence            3344455667899999999999998765  322 3433  333  58897 69999997 6888888877653

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=4.2e-11  Score=131.53  Aligned_cols=59  Identities=12%  Similarity=0.050  Sum_probs=45.8

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..|...+.+.|++++.++.|++|+.+++ ++++||.+..  +++...+.|+ .||||+|++..
T Consensus       152 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  212 (591)
T PRK07057        152 HTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAK-TTLFATGGAGR  212 (591)
T ss_pred             HHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence            3444445678999999999999998643 7899998753  4555678885 79999999864

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.29  E-value=6.5e-11  Score=122.95  Aligned_cols=205  Identities=19%  Similarity=0.186  Sum_probs=118.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCccc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCP  146 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~  146 (511)
                      .+|||+|||||+.|+++|+.|++. +.++|+||||-.....                                       
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~---------------------------------------   42 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ---------------------------------------   42 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence            469999999999999999999994 4499999999865432                                       


Q ss_pred             cCCcceecccccccccccccCC---cccchH-HhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCC
Q psy760          147 WPSGKGVGGTSLINTMLYTRGN---KRNYDD-WAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY  222 (511)
Q Consensus       147 ~~rGk~lGGsS~~n~~~~~r~~---~~d~~~-w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~  222 (511)
                              ++|..|++...-+.   +.+... ....|+        ..+|+-..++.      -+|... |.+-+...+.
T Consensus        43 --------~sS~~NSgviHag~~y~p~slka~l~~~g~--------~~~~~~~kq~~------~~f~~~-g~l~vA~~e~   99 (429)
T COG0579          43 --------ESSSNNSGVIHAGLYYTPGSLKAKLCVAGN--------INEFAICKQLG------IPFINC-GKLSVATGEE   99 (429)
T ss_pred             --------ccccCcccceeccccCCCcchhhHHHHHHH--------HHHHHHHHHhC------Cccccc-CeEEEEEChH
Confidence                    11112221111110   001110 000011        01122222221      113333 7777777777


Q ss_pred             CChHHHHHHHHHHHcCCCC-CCCCC-----------CCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEE
Q psy760          223 NTPMLDAFLQAGMEAGYPL-VDYNG-----------KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK  290 (511)
Q Consensus       223 ~~~~~~~~~~a~~~~G~~~-~~~~~-----------~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~  290 (511)
                      ..+..+.+.+.+.+.|++. ...+.           ....+..+.+.+..-  ........+...+.+.|++|..|++|+
T Consensus       100 e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV--~~~~~t~~l~e~a~~~g~~i~ln~eV~  177 (429)
T COG0579         100 EVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIV--DPGELTRALAEEAQANGVELRLNTEVT  177 (429)
T ss_pred             HHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceE--cHHHHHHHHHHHHHHcCCEEEecCeee
Confidence            7777888888888888872 11111           112222222222111  112223334445667799999999999


Q ss_pred             EEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCc
Q psy760          291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQ  342 (511)
Q Consensus       291 ~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~  342 (511)
                      +|..+++ | ++-+. ..+|++. ++|+ -||.|||. .+..|++++|+.+.
T Consensus       178 ~i~~~~d-g-~~~~~-~~~g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~~  223 (429)
T COG0579         178 GIEKQSD-G-VFVLN-TSNGEET-LEAK-FVINAAGL-YADPLAQMAGIPED  223 (429)
T ss_pred             EEEEeCC-c-eEEEE-ecCCcEE-EEee-EEEECCch-hHHHHHHHhCCCcc
Confidence            9998874 2 22222 2345543 8996 69999996 68899999998763

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.29  E-value=2.9e-11  Score=132.35  Aligned_cols=51  Identities=29%  Similarity=0.457  Sum_probs=42.1

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      +..|++++.++.|++|+.++  ++|+||....  +++...+.|+ .||||+|++..
T Consensus       144 ~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~  196 (580)
T TIGR01176       144 TYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR  196 (580)
T ss_pred             hcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence            34689999999999999875  7999998753  5666688895 89999999764

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.29  E-value=2.2e-11  Score=133.77  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=47.6

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCC--CCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPV--TKKACGVLAT--IKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~--~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ....|...+++.|++|++++.|++|+.+++  +++|+||...  .+++.+.++|+ .||||+|++..
T Consensus       142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  207 (583)
T PRK08205        142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence            344565556778999999999999998652  2689999875  35555678895 79999999763

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.29  E-value=2.4e-11  Score=134.72  Aligned_cols=57  Identities=16%  Similarity=0.300  Sum_probs=46.5

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .|...+.+.|++|+.++.|++|+.++  ++|+||.+.+  +++.+.+.|+ .||||||++..
T Consensus       163 ~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~  221 (657)
T PRK08626        163 AVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR  221 (657)
T ss_pred             HHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence            34445667899999999999999875  7999998874  5666678895 79999999864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.28  E-value=1.7e-11  Score=135.37  Aligned_cols=47  Identities=19%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             cEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          281 LTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       281 v~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ++|+.++.|++|+.++  ++++||....  +++...++|+ .||||+|++..
T Consensus       166 v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~  214 (626)
T PRK07803        166 IKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK  214 (626)
T ss_pred             eEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence            9999999999999875  7899987653  5666678996 79999999764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.27  E-value=1e-10  Score=121.73  Aligned_cols=34  Identities=44%  Similarity=0.599  Sum_probs=31.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |||||||||++|+++|++|++ .|.+|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            799999999999999999999 7999999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.27  E-value=9.3e-11  Score=123.60  Aligned_cols=60  Identities=20%  Similarity=0.287  Sum_probs=43.1

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      .|...+++.|++|+++++|++|..++  +++++|+..  +.  +++|+ .||+|+|+ +++.++..-|
T Consensus       206 ~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~--~~--~~~a~-~VV~a~G~-~~~~l~~~~g  265 (416)
T PRK00711        206 RLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTG--GG--VITAD-AYVVALGS-YSTALLKPLG  265 (416)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeC--Cc--EEeCC-EEEECCCc-chHHHHHHhC
Confidence            34455677899999999999998765  556666543  22  68897 69999997 4666665433

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.26  E-value=3e-11  Score=132.65  Aligned_cols=55  Identities=20%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             hHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760          272 IDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       272 L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~  329 (511)
                      |...+ +..|++++.++.|++|+.++  ++++||.+..  +++...++|+ .||||+|++.
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~  200 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG  200 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence            43333 34699999999999999875  7899998753  4555678896 7999999974

>PRK08275 putative oxidoreductase; Provisional

Probab=99.25  E-value=7.6e-11  Score=128.81  Aligned_cols=61  Identities=25%  Similarity=0.282  Sum_probs=47.1

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ....|...+++.|++|++++.|++|+.+++ ++++||.+..  +++...++|+ .||||+|++..
T Consensus       139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~  201 (554)
T PRK08275        139 IKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAK-AVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECC-EEEECCCCccc
Confidence            344565656778999999999999998733 7899998653  4555678885 79999999753

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.25  E-value=8.4e-11  Score=127.90  Aligned_cols=53  Identities=19%  Similarity=0.223  Sum_probs=42.5

Q ss_pred             hCCCcEEEeCceEEEEEEcC----CCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          277 KRCNLTVKDSSFVKKILIDP----VTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~----~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ++.|++|++++.|++|+.++    ++++|+||.+..  +++...+.|+ .||||+|++..
T Consensus       150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~  208 (536)
T PRK09077        150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK  208 (536)
T ss_pred             hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence            45699999999999998764    137899998864  4666688895 89999999863

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.24  E-value=4.6e-11  Score=129.12  Aligned_cols=56  Identities=21%  Similarity=0.283  Sum_probs=43.6

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCc
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .|...++ .|++|++++.|++|+.++  +++.||.+.. +++.+.++|+ .||||+|++..
T Consensus       135 ~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~  191 (510)
T PRK08071        135 HLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG  191 (510)
T ss_pred             HHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence            3434343 699999999999998765  7899998765 4555578886 79999999764

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.24  E-value=2e-10  Score=126.56  Aligned_cols=56  Identities=18%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             hhHhhhhCC-CcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760          271 YIDPIKKRC-NLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       271 ~L~~~~~r~-gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      .|...+++. |++++.++.|++|+.++  ++++||...  .+++.+.++|+ .||||+|++.
T Consensus       137 ~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~  195 (608)
T PRK06854        137 IVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA  195 (608)
T ss_pred             HHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence            344445454 59999999999998875  789999764  34555678896 7999999975

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.24  E-value=3.1e-11  Score=129.25  Aligned_cols=63  Identities=21%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             hhHhhhhC----CC--cEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          271 YIDPIKKR----CN--LTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       271 ~L~~~~~r----~g--v~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      .+...+++    .|  ++|+++++|++|..++  +....|... ++   +++|+ .||+|||+ ++..|+..+|++.
T Consensus       216 al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~-~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~~  284 (497)
T PTZ00383        216 SFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTN-RG---EIRAR-FVVVSACG-YSLLFAQKMGYGL  284 (497)
T ss_pred             HHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEEC-CC---EEEeC-EEEECcCh-hHHHHHHHhCCCC
Confidence            34344556    56  8899999999998764  334445432 23   68997 69999998 5889999999853

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.23  E-value=1.2e-10  Score=114.68  Aligned_cols=57  Identities=12%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC--------CeEEEEEeCcEEEEccCCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--------GIDHKILARKEVILSAGAF  328 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~--------g~~~~v~A~k~VILAAGa~  328 (511)
                      ..|...+.+.|++++.++.|++|..+++ +++.||.+...        .+..+++|+ .||+|+|..
T Consensus       108 ~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~  172 (257)
T PRK04176        108 AKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHD  172 (257)
T ss_pred             HHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCC
Confidence            3455556678999999999999988663 48999886421        123579996 799999974

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.22  E-value=6.8e-11  Score=130.03  Aligned_cols=51  Identities=20%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      +.|++|++++.|++|+.+++ ++|+||.+..  +++.+.+.|+ .||||||++..
T Consensus       145 ~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~  197 (603)
T TIGR01811       145 AGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSAD-AVILATGGYGN  197 (603)
T ss_pred             cCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence            35899999999999998753 6999999874  4555678896 79999999853

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.20  E-value=2.6e-10  Score=122.22  Aligned_cols=66  Identities=20%  Similarity=0.119  Sum_probs=46.1

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      .|...+++.|++|+++++|++|..+++ +.+ .|.+.  ..++..+++|+ .||+|||+ ++.+++...|+.
T Consensus       183 aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~  250 (483)
T TIGR01320       183 QLLGYLVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP  250 (483)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence            344455677999999999999987542 222 23332  23333468997 69999997 578888888875

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.20  E-value=1.5e-10  Score=113.76  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=43.2

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-----C---eEEEEEeCcEEEEccCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-----G---IDHKILARKEVILSAGA  327 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-----g---~~~~v~A~k~VILAAGa  327 (511)
                      ...|...+.+.|++++.++.|++|+.+++..+++||.+...     +   +..+++|+ -||.|+|.
T Consensus       103 ~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak-~VVdATG~  168 (254)
T TIGR00292       103 ISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSR-VVVDATGH  168 (254)
T ss_pred             HHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcC-EEEEeecC
Confidence            34555556678999999999999998764237999987421     1   24589996 89999995

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.16  E-value=6.3e-10  Score=115.53  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +|||+|||||++|+++|+.|++ .|.+|+||||+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            5999999999999999999999 7999999999853

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.16  E-value=6.9e-10  Score=119.15  Aligned_cols=67  Identities=19%  Similarity=0.153  Sum_probs=45.7

Q ss_pred             HhhHhhhhCCC-cEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          270 DYIDPIKKRCN-LTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       270 ~~L~~~~~r~g-v~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ..|...+++.| ++|+++++|++|..+++ ++++ |.+..  .++..+++|+ .||+|||+ ++..++..+|+.
T Consensus       187 ~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~  256 (494)
T PRK05257        187 RQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP  256 (494)
T ss_pred             HHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence            34444455555 89999999999987653 3332 33322  3433368997 69999998 578888888874

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.16  E-value=8.8e-10  Score=120.88  Aligned_cols=57  Identities=23%  Similarity=0.290  Sum_probs=43.7

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCC-CcEEEEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVT-KKACGVLAT--IKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~-~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      +.....+.+++|+.++.|++|+.++++ ++|+||.+.  .+++...+.|+ .||||||++.
T Consensus       132 l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~  191 (614)
T TIGR02061       132 VAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV  191 (614)
T ss_pred             HHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence            333344567899999999999986532 689999874  35666678896 8999999985

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.16  E-value=3.4e-10  Score=122.50  Aligned_cols=58  Identities=24%  Similarity=0.360  Sum_probs=44.9

Q ss_pred             HhhHhhhh-CCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760          270 DYIDPIKK-RCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       270 ~~L~~~~~-r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..|...++ +.|++|+.++.|++|+.++  ++++||.+...++...+.|+ .||||+|++..
T Consensus       140 ~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~  198 (513)
T PRK07512        140 RALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPAR-AVVLATGGIGG  198 (513)
T ss_pred             HHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence            34444444 4599999999999998765  79999988765555578896 79999999863

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.16  E-value=3.5e-10  Score=130.04  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=40.5

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .++++.+++.+++|+.++  ++|+||....  +|+.+.+.|+ .||||||+++.
T Consensus       156 ~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~  206 (897)
T PRK13800        156 ERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAK-AVILATGPCGR  206 (897)
T ss_pred             CCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence            479999999999998875  7999998753  5667788895 89999999863

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.15  E-value=4e-10  Score=116.68  Aligned_cols=33  Identities=33%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |||||||||++|+++|++|++ .|.+|+|||++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            699999999999999999999 799999999985

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.15  E-value=1.1e-09  Score=116.09  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccc--cc-cCCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEH--LN-DLNI  350 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~--L~-~~gi  350 (511)
                      +...|.++++.++|++++.++  + ++||++.+  .|+++.++|+ .||.|||. ++-+++...+..+..+  +. ..|+
T Consensus       174 A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~~~~~~~~~~vr~skGs  248 (532)
T COG0578         174 AAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMAGLEQSPHIGVRPSKGS  248 (532)
T ss_pred             HHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhhcccCCCCccceeccce
Confidence            567899999999999999987  5 99999984  5788899997 69999996 6889999887665432  33 5787


Q ss_pred             CccccC
Q psy760          351 PVIKNL  356 (511)
Q Consensus       351 ~vv~~~  356 (511)
                      .+|.+-
T Consensus       249 HlVv~~  254 (532)
T COG0578         249 HLVVDK  254 (532)
T ss_pred             EEEecc
Confidence            777765

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=99.14  E-value=6e-12  Score=129.49  Aligned_cols=175  Identities=12%  Similarity=0.003  Sum_probs=105.3

Q ss_pred             ccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCcc
Q psy760          264 RRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQE  343 (511)
Q Consensus       264 r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~  343 (511)
                      +..+....|...+++.|++|+++++|++|  ++  ++ ..|.+..++  ..++|+ .||||+|+...|++= -+|-| -.
T Consensus        84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~--~~~~a~-~vIlAtGG~s~p~~G-s~g~g-y~  153 (376)
T TIGR03862        84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQ--STIEAD-AVVLALGGASWSQLG-SDGAW-QQ  153 (376)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCc--eEEecC-EEEEcCCCccccccC-CCcHH-HH
Confidence            45566667777788999999999999999  33  22 344432222  258897 699999998777541 11111 11


Q ss_pred             ccccCCCCccccCc--cchhhhhc-ccCceEEEEEcCCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee---eee
Q psy760          344 HLNDLNIPVIKNLR--VGENLQEH-LAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IKT  417 (511)
Q Consensus       344 ~L~~~gi~vv~~~P--VG~nl~DH-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~  417 (511)
                      .++++||+++...|  |...+.+. .....+.+...+.+.... . .           ....|++..+|++.+|   +++
T Consensus       154 la~~lGh~i~~~~PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~-~-~-----------~~~~GellFTh~GiSGpavl~l  220 (376)
T TIGR03862       154 VLDQRGVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATA-G-T-----------QQTRGEIVITARGLEGGLIYAL  220 (376)
T ss_pred             HHHHCCCcccCCcCeeceEEccCchhhHhhcCCCcccceEEEe-C-C-----------eeEeeeEEEECCCccHHHHHHH
Confidence            26789999999999  77777542 110002221111111100 0 0           1235999999999998   777


Q ss_pred             hhccchhhhhcc-CCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC
Q psy760          418 IFAAHHDKINKS-GEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS  465 (511)
Q Consensus       418 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (511)
                      |.... ..+... ...|.|+|.++.+.+++.+.+.+   +.+++++...
T Consensus       221 S~~~~-~~~~~~~~~~i~idf~P~~~~~~l~~~l~~---~~~~k~l~~~  265 (376)
T TIGR03862       221 SAALR-EQIKAGGSANLFLDLLPDLSLEQVTKRLAA---PRGKQSLSNH  265 (376)
T ss_pred             HHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHHh---hcccchHHHH
Confidence            76543 332333 56699999998654444444443   2256666544

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.13  E-value=4.1e-10  Score=119.49  Aligned_cols=65  Identities=17%  Similarity=0.286  Sum_probs=48.6

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      ....|...+++.|++|+++++|++|+.++++++++||....++  ..++|+ .||||+|++...+-++
T Consensus       125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~ak-~VIlAtGG~~~n~~~~  189 (432)
T TIGR02485       125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITTQ-ALVLAAGGLGANRDWL  189 (432)
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEcC-EEEEcCCCcccCHHHH
Confidence            3445555677889999999999999886323789998764332  378885 7999999998766443

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.13  E-value=1.7e-09  Score=119.54  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=50.0

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      +...+++.|++|+.+++|++|..++++++++||++.+  +++.++++|+ .||+|||+ ++.+++...|
T Consensus       238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g  304 (627)
T PLN02464        238 LACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD  304 (627)
T ss_pred             HHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence            3344677899999999999998864126888988753  4455578997 69999997 5888888765

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.12  E-value=4.9e-10  Score=104.77  Aligned_cols=36  Identities=44%  Similarity=0.646  Sum_probs=30.3

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++||+|||+|++|+++|+.||+ .|+||+|+|+...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~~   51 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKLS   51 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCCC
Confidence            47999999999999999999999 7999999999743

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.11  E-value=6.9e-10  Score=103.16  Aligned_cols=34  Identities=47%  Similarity=0.674  Sum_probs=32.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .+.||||||+|++|++||++||+ .|.+|+|+||.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~   62 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERK   62 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHh-CCceEEEEEee
Confidence            36899999999999999999999 79999999986

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.11  E-value=4.7e-10  Score=120.08  Aligned_cols=55  Identities=16%  Similarity=0.298  Sum_probs=41.2

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ....|...+++.|++++.+ .|++|+.++  ++++||..  +++  .++|+ .||||||++..
T Consensus       122 i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~--~g~--~i~a~-~VVLATGG~~~  176 (466)
T PRK08401        122 IIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL--DGE--LLKFD-ATVIATGGFSG  176 (466)
T ss_pred             HHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE--CCE--EEEeC-eEEECCCcCcC
Confidence            3445555567789999876 899987754  78888876  333  57886 79999999765

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.05  E-value=8.7e-09  Score=110.20  Aligned_cols=60  Identities=25%  Similarity=0.122  Sum_probs=42.5

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEE--EECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLA--TIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~--~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ++.|++++++++|++|..+++ +..+ |.+  ...++..+++|+ .||+|||+ ++.+++..+|+.
T Consensus       196 ~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~  257 (497)
T PRK13339        196 SHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIP  257 (497)
T ss_pred             hCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence            456999999999999987632 3332 332  123323368897 69999998 688899998874

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.05  E-value=7.8e-09  Score=111.87  Aligned_cols=61  Identities=15%  Similarity=0.038  Sum_probs=44.5

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHh-cCC
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLML-SGI  339 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~-SGI  339 (511)
                      ..+.+.|++++.+++|++|..++  + ..+|.+.+  +++..+++|+ .||+|||+ ++.+++.. .|+
T Consensus       163 ~~A~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~  226 (508)
T PRK12266        163 RDAAERGAEILTRTRVVSARREN--G-LWHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDDGLGL  226 (508)
T ss_pred             HHHHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhhccCC
Confidence            34667899999999999998764  3 34566553  3555689997 69999997 57777653 354

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.05  E-value=1.5e-10  Score=122.59  Aligned_cols=63  Identities=22%  Similarity=0.280  Sum_probs=0.0

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .|...+++.|++|++++.|++++.++  ++++||.+...+...+|+|+ .||-|+|   ...|..++|.
T Consensus        95 ~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~-~~IDaTG---~g~l~~~aG~  157 (428)
T PF12831_consen   95 VLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAK-VFIDATG---DGDLAALAGA  157 (428)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccccccccc-ccccccc---cccccccccc
Confidence            45555567899999999999999986  78999999854446689996 7999999   4678888874

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.04  E-value=7.4e-09  Score=111.98  Aligned_cols=61  Identities=13%  Similarity=0.060  Sum_probs=44.7

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHH-hcCC
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLM-LSGI  339 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~-~SGI  339 (511)
                      ..+++.|++++.+++|++|..++  + ..+|.+.++ +++.+++|+ .||.|||+ ++++++. ..|+
T Consensus       163 ~~a~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~  225 (502)
T PRK13369        163 LDAAERGATILTRTRCVSARREG--G-LWRVETRDADGETRTVRAR-ALVNAAGP-WVTDVIHRVAGS  225 (502)
T ss_pred             HHHHHCCCEEecCcEEEEEEEcC--C-EEEEEEEeCCCCEEEEEec-EEEECCCc-cHHHHHhhccCC
Confidence            34667899999999999998764  3 345665543 555679997 69999997 5777765 3354

>KOG2820|consensus

Probab=99.01  E-value=2.9e-09  Score=104.76  Aligned_cols=65  Identities=25%  Similarity=0.219  Sum_probs=49.0

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhc-CCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS-GIG  340 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~S-GIG  340 (511)
                      .+...++..|+.++.+..|+.+.+.++.+..++|+++++.   .+.|+ .+|+++|+ ++.++|..| +||
T Consensus       158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---~Y~ak-kiI~t~Ga-Wi~klL~~~~~~~  223 (399)
T KOG2820|consen  158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---IYHAK-KIIFTVGA-WINKLLPTSLAIG  223 (399)
T ss_pred             HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---eeecc-eEEEEecH-HHHhhcCcccccC
Confidence            4555677899999999999999887654566677665442   57887 59999998 588888764 443

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=99.00  E-value=4.6e-09  Score=113.79  Aligned_cols=99  Identities=20%  Similarity=0.204  Sum_probs=59.0

Q ss_pred             HHHHHHHHcCCCCCC-CCCC---CccceeecccccCCCcc-cchhHHhhHhhhhC-CCcEEEeCceEEEEEEcCCCCcEE
Q psy760          229 AFLQAGMEAGYPLVD-YNGK---TQTGFARAQATLHKRSR-RSSAKDYIDPIKKR-CNLTVKDSSFVKKILIDPVTKKAC  302 (511)
Q Consensus       229 ~~~~a~~~~G~~~~~-~~~~---~~~G~~~~~~~~~~g~r-~~~~~~~L~~~~~r-~gv~v~~~t~V~~I~~d~~~~ra~  302 (511)
                      ..+..+++.|.++.. .++.   ...|......++..+.+ .......|.....+ .+++++.+..|++|+.+++ +++.
T Consensus        96 ~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~  174 (562)
T COG1053          96 EAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVA  174 (562)
T ss_pred             HHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEE
Confidence            445566778888742 2221   11111111122322222 22233334333444 7789999999999998874 4488


Q ss_pred             EEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760          303 GVLAT--IKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       303 GV~~~--~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      ||...  .+++...++| |.||+|+|+.+
T Consensus       175 Gvv~~~~~~g~~~~~~a-kavilaTGG~g  202 (562)
T COG1053         175 GVVARDLRTGELYVFRA-KAVILATGGAG  202 (562)
T ss_pred             EEEEEEecCCcEEEEec-CcEEEccCCce
Confidence            88765  3567778888 47999999987

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.98  E-value=1.7e-09  Score=111.84  Aligned_cols=101  Identities=18%  Similarity=0.247  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcCCCCCC-CCCCC---ccceeecccccCC-CcccchhHHhhHh-hhhCCCcEEEeCceEEEEEEcCCCCc
Q psy760          227 LDAFLQAGMEAGYPLVD-YNGKT---QTGFARAQATLHK-RSRRSSAKDYIDP-IKKRCNLTVKDSSFVKKILIDPVTKK  300 (511)
Q Consensus       227 ~~~~~~a~~~~G~~~~~-~~~~~---~~G~~~~~~~~~~-g~r~~~~~~~L~~-~~~r~gv~v~~~t~V~~I~~d~~~~r  300 (511)
                      ....++.+.+.|+++.. ..+.-   ..|......-.+. +..-......|.. +.+++|++|+.++.+.+|+.+++ ..
T Consensus        89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~  167 (518)
T COG0029          89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-IG  167 (518)
T ss_pred             HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-ce
Confidence            34556777788999842 22211   1121111111111 1122233334433 44569999999999999999872 25


Q ss_pred             EEEEEEEECC-eEEEEEeCcEEEEccCCCC
Q psy760          301 ACGVLATIKG-IDHKILARKEVILSAGAFN  329 (511)
Q Consensus       301 a~GV~~~~~g-~~~~v~A~k~VILAAGa~~  329 (511)
                      +.||.+...+ +..+++|+ .||||+|+++
T Consensus       168 ~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g  196 (518)
T COG0029         168 VAGVLVLNRNGELGTFRAK-AVVLATGGLG  196 (518)
T ss_pred             EeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence            5699887654 46789996 7999999964

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.97  E-value=1.3e-09  Score=115.44  Aligned_cols=66  Identities=20%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      ....+|...+++.|++|+++++|++|..++  +++++|.  .+++  +++|+ -||+|+|.  +..+....|+..
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~--~~g~--~i~A~-~VI~A~G~--~s~l~~~lgl~~  174 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVE--ADGD--VIEAK-TVILADGV--NSILAEKLGMAK  174 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEE--cCCc--EEECC-EEEEEeCC--CHHHHHHcCCCC
Confidence            345567667778899999999999998765  5665554  2333  68897 69999997  456666666543

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.97  E-value=2.9e-09  Score=118.93  Aligned_cols=34  Identities=32%  Similarity=0.569  Sum_probs=32.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ++||||||||++|+++|++|++ .|++|+||||+.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            5899999999999999999999 799999999985

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.95  E-value=5e-09  Score=109.89  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ..+|...+++.|++++.+++|+.+..+++ +.++++.  .++  .+++|+ -||.|.|.  ...+....|+-
T Consensus        98 d~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~--~~~--~e~~a~-~vI~AdG~--~s~l~~~lg~~  161 (396)
T COG0644          98 DKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVR--AGD--DEVRAK-VVIDADGV--NSALARKLGLK  161 (396)
T ss_pred             hHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEE--cCC--EEEEcC-EEEECCCc--chHHHHHhCCC
Confidence            34677778889999999999999998874 3333332  222  489996 68888886  56666665654

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.92  E-value=9.1e-09  Score=100.92  Aligned_cols=65  Identities=17%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--------EC-------CeEEEEEeCcEEEEccCCCCcHHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--------IK-------GIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--------~~-------g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ..-+..+.++.-+++...++|.+|...+  ++++||.-.        ++       ...++++|. .||+++|+++-.+-
T Consensus       156 vr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhe  232 (552)
T COG3573         156 VRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHE  232 (552)
T ss_pred             HHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHH
Confidence            3344445557779999999999999987  899998632        10       012578886 79999999987765


Q ss_pred             HHh
Q psy760          334 LML  336 (511)
Q Consensus       334 L~~  336 (511)
                      |-+
T Consensus       233 lVR  235 (552)
T COG3573         233 LVR  235 (552)
T ss_pred             HHH
Confidence            543

>KOG0042|consensus

Probab=98.92  E-value=6.7e-09  Score=107.66  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=55.3

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcC-CCCccccccCCCCc
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSG-IGPQEHLNDLNIPV  352 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SG-IGp~~~L~~~gi~v  352 (511)
                      +.+.|.+++-..+|.+++.+++ +++.|+++.+  .|+++.|+|+ .||-|||.| |..|++.-. --++--..+.|+.+
T Consensus       234 A~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATGpf-sDsIr~Mdd~~~~~i~~pSsGvHI  310 (680)
T KOG0042|consen  234 AARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAK-VVVNATGPF-SDSIRKMDDEDAKPICVPSSGVHI  310 (680)
T ss_pred             HHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEE-EEEeCCCCc-cHHHHhhcccccCceeccCCceeE
Confidence            4578999999999999999886 6899999874  5889999995 799999987 555555432 11111123456665


Q ss_pred             ccc
Q psy760          353 IKN  355 (511)
Q Consensus       353 v~~  355 (511)
                      |.+
T Consensus       311 VlP  313 (680)
T KOG0042|consen  311 VLP  313 (680)
T ss_pred             Ecc
Confidence            544

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.91  E-value=6.4e-09  Score=112.53  Aligned_cols=35  Identities=40%  Similarity=0.563  Sum_probs=32.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||.||+.||+.+|+ .|.+|+|||+..
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence            46999999999999999999999 899999999874

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.91  E-value=3.6e-08  Score=102.63  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..++||||||||++|+++|+.|++ .|.+|+|+|++..
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~   38 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEA   38 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCcc
Confidence            357999999999999999999999 8999999999864

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.89  E-value=2.1e-08  Score=107.51  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=48.8

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCC--CCcEEEEEEEEC--CeEEEEEeCcEEEEccCCCCcH
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPV--TKKACGVLATIK--GIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~--~~ra~GV~~~~~--g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      +...-|...+++.|++|+++++|++|.++.+  .++|+||++..+  ++...+.+++.||+++|++...
T Consensus       227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence            3333444556789999999999999998622  368999999863  3445567778999999998554

>PRK10015 oxidoreductase; Provisional

Probab=98.88  E-value=4.2e-09  Score=111.61  Aligned_cols=65  Identities=20%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      ...+|...+++.|++++.+++|++|..++  +++++|..  ++.  +++|+ .||+|.|.  ...+-...|+.+
T Consensus       110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~--~~~--~i~A~-~VI~AdG~--~s~v~~~lg~~~  174 (429)
T PRK10015        110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQA--GDD--ILEAN-VVILADGV--NSMLGRSLGMVP  174 (429)
T ss_pred             HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEe--CCe--EEECC-EEEEccCc--chhhhcccCCCc
Confidence            44466666777899999999999998765  56666653  232  68996 79999997  444545455543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.86  E-value=1.4e-08  Score=95.86  Aligned_cols=64  Identities=22%  Similarity=0.353  Sum_probs=40.3

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      ...|+...+++.+++++++++|+++..+++  +   +.+..... .+++|+ .||+|+|.+..|+.+..-|
T Consensus        84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~---w~v~~~~~-~~~~a~-~VVlAtG~~~~p~~p~~~g  147 (203)
T PF13738_consen   84 VLDYLQEYAERFGLEIRFNTRVESVRRDGD--G---WTVTTRDG-RTIRAD-RVVLATGHYSHPRIPDIPG  147 (203)
T ss_dssp             HHHHHHHHHHHTTGGEETS--EEEEEEETT--T---EEEEETTS--EEEEE-EEEE---SSCSB---S-TT
T ss_pred             HHHHHHHHHhhcCcccccCCEEEEEEEecc--E---EEEEEEec-ceeeee-eEEEeeeccCCCCcccccc
Confidence            345888888888999999999999999874  2   43443222 367897 6999999999998876544

...

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.82  E-value=4e-08  Score=104.82  Aligned_cols=68  Identities=16%  Similarity=0.288  Sum_probs=47.2

Q ss_pred             hHHhhHhhhhCCCcE--EEeCceEEEEEEcCCCCcEEEEEEEECC-eEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          268 AKDYIDPIKKRCNLT--VKDSSFVKKILIDPVTKKACGVLATIKG-IDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~--v~~~t~V~~I~~d~~~~ra~GV~~~~~g-~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ...||...+++.|+.  |..+++|++|..++  ++. -|.+...+ ...+..++ .||+|+|.+..|.+...-|+
T Consensus       113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w-~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~  183 (461)
T PLN02172        113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKW-RVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI  183 (461)
T ss_pred             HHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeE-EEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence            455888878888887  99999999998764  322 23333222 22345676 69999999888887766554

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.80  E-value=4e-08  Score=105.72  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=34.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+||||||||.+|+++|..||+ .|++|+||||.....
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~G   39 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRVG   39 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCCC
Confidence            36999999999999999999999 899999999987664

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.79  E-value=1.1e-07  Score=100.63  Aligned_cols=41  Identities=27%  Similarity=0.469  Sum_probs=37.3

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      |.++|||||||+|.+||++|..||+ .|++||+|||.+..+.
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~yGG   41 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYYGG   41 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCcCc
Confidence            4678999999999999999999999 8999999999987653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.76  E-value=6.4e-08  Score=96.52  Aligned_cols=34  Identities=44%  Similarity=0.884  Sum_probs=32.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |||+|||||++|+++|+.|++ .|.+|+||||...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            799999999999999999999 7999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.74  E-value=2.2e-08  Score=95.99  Aligned_cols=83  Identities=17%  Similarity=0.085  Sum_probs=52.7

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCcccccc-----------
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLND-----------  347 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~-----------  347 (511)
                      .+++|+++++|++|...++     ...+..++......++ .|||+.=+-+++.||--+.++-+..|+.           
T Consensus       116 tdL~V~~~~rVt~v~~~~~-----~W~l~~~~g~~~~~~d-~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~  189 (331)
T COG3380         116 TDLTVVLETRVTEVARTDN-----DWTLHTDDGTRHTQFD-DVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW  189 (331)
T ss_pred             ccchhhhhhhhhhheecCC-----eeEEEecCCCcccccc-eEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence            4789999999999987653     5666653333356676 6999999877777775433332222221           


Q ss_pred             ---CCCCccccCc-cchhhhhccc
Q psy760          348 ---LNIPVIKNLR-VGENLQEHLA  367 (511)
Q Consensus       348 ---~gi~vv~~~P-VG~nl~DH~~  367 (511)
                         +|.+...+.| -|-.+.+|+.
T Consensus       190 s~~lg~~q~l~~P~~G~~vdg~~l  213 (331)
T COG3380         190 SAVLGYPQPLDRPWPGNFVDGHPL  213 (331)
T ss_pred             HHHhcCCccCCCCCCCcccCCCee
Confidence               3555556666 6655566654

>KOG2415|consensus

Probab=98.73  E-value=2.9e-08  Score=100.01  Aligned_cols=74  Identities=11%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             ccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----CC-------eEEEEEeCcEEEEccCCCCc-
Q psy760          264 RRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----KG-------IDHKILARKEVILSAGAFNS-  330 (511)
Q Consensus       264 r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----~g-------~~~~v~A~k~VILAAGa~~S-  330 (511)
                      +..-...||...++..|++|..+..+.+++++++ +.|.||.+.+     +|       +-..++|+ ..|.|-|.-++ 
T Consensus       181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~L  258 (621)
T KOG2415|consen  181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSL  258 (621)
T ss_pred             EHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchh
Confidence            3445667888888999999999999999999986 7899987653     22       12468885 78898887554 


Q ss_pred             -HHHHHhcCC
Q psy760          331 -PKLLMLSGI  339 (511)
Q Consensus       331 -P~LL~~SGI  339 (511)
                       -|++..-++
T Consensus       259 skqi~kkf~L  268 (621)
T KOG2415|consen  259 SKQIIKKFDL  268 (621)
T ss_pred             HHHHHHHhCc
Confidence             456665443

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.72  E-value=1.5e-08  Score=104.35  Aligned_cols=47  Identities=30%  Similarity=0.463  Sum_probs=36.0

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..+|++|+ +.+|++|..++  +++.||... +|.  .+.|+ .||+|+|+|.+
T Consensus       107 ~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~-~g~--~~~a~-~vVlaTGtfl~  153 (392)
T PF01134_consen  107 SHPNLTII-QGEVTDLIVEN--GKVKGVVTK-DGE--EIEAD-AVVLATGTFLN  153 (392)
T ss_dssp             TSTTEEEE-ES-EEEEEECT--TEEEEEEET-TSE--EEEEC-EEEE-TTTGBT
T ss_pred             cCCCeEEE-EcccceEEecC--CeEEEEEeC-CCC--EEecC-EEEEecccccC
Confidence            45899996 67999999987  899999864 344  68897 79999999443

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR02730 carot_isom carotene isomerase

Probab=98.71  E-value=1.5e-07  Score=101.63  Aligned_cols=59  Identities=20%  Similarity=0.241  Sum_probs=45.2

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ....|...+++.|++|+++++|++|..++  +++.||++.+ ++  ++.|+ .||+|+|...+-+
T Consensus       231 l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~-g~--~~~ad-~vV~a~~~~~~~~  289 (493)
T TIGR02730       231 IAESLVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLAD-GE--KIYAK-RIVSNATRWDTFG  289 (493)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCC-CC--EEEcC-EEEECCChHHHHH
Confidence            34445566778899999999999999876  6888998754 33  57897 6999999855543

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK06185 hypothetical protein; Provisional

Probab=98.70  E-value=1e-07  Score=100.16  Aligned_cols=66  Identities=20%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             hhHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          271 YIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       271 ~L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      +|...+ +..|++++.++.|+++..++  +++++|.+...+.+.+++|+ -||.|.|+ +|. +-...|+..
T Consensus       113 ~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~-~vI~AdG~-~S~-vr~~~gi~~  179 (407)
T PRK06185        113 FLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRAD-LVVGADGR-HSR-VRALAGLEV  179 (407)
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeC-EEEECCCC-chH-HHHHcCCCc
Confidence            444434 34699999999999998876  67778877653333478996 68888887 443 556667654

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.65  E-value=2.9e-07  Score=97.01  Aligned_cols=39  Identities=38%  Similarity=0.485  Sum_probs=35.2

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+..+|||+|||||++|+++|..|++ .|++|+|+||.+.
T Consensus        14 ~~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   52 (415)
T PRK07364         14 TRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPA   52 (415)
T ss_pred             CCccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCc
Confidence            34557999999999999999999999 8999999999864

>KOG2844|consensus

Probab=98.62  E-value=3.3e-07  Score=97.36  Aligned_cols=201  Identities=16%  Similarity=0.146  Sum_probs=110.0

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      ..+...|+||||||.+|+.+|++||+ .|.+ ++++|+...-.                                     
T Consensus        35 ~~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~~lts-------------------------------------   76 (856)
T KOG2844|consen   35 PLPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERSRLTS-------------------------------------   76 (856)
T ss_pred             cCCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeeeeecc-------------------------------------
Confidence            45567999999999999999999999 8998 55555542110                                     


Q ss_pred             ccccCCcceecccccccccccc--cCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCC
Q psy760          144 RCPWPSGKGVGGTSLINTMLYT--RGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTE  221 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~--r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~  221 (511)
                                 |++.+.+++..  |+++.+.+..+.         +-...+.+.|+....   ..-++ ..|.+.+....
T Consensus        77 -----------gttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEtgl---~tGwi-q~G~~~lAs~~  132 (856)
T KOG2844|consen   77 -----------GTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEETGL---HTGWI-QNGGIFLASNR  132 (856)
T ss_pred             -----------ccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhcCC---Cccee-cCCceEEecCH
Confidence                       23333333333  333333333321         112234444443322   11122 23444444443


Q ss_pred             CCChHHHHHHHHHHHcCCCCCCCC------------CCCccceeecccccCCCc-ccchhHHhhHhhhhCCCcEEEeCce
Q psy760          222 YNTPMLDAFLQAGMEAGYPLVDYN------------GKTQTGFARAQATLHKRS-RRSSAKDYIDPIKKRCNLTVKDSSF  288 (511)
Q Consensus       222 ~~~~~~~~~~~a~~~~G~~~~~~~------------~~~~~G~~~~~~~~~~g~-r~~~~~~~L~~~~~r~gv~v~~~t~  288 (511)
                      ......+.++......|.+..-+.            -....|.-+.|.   +|. ........|..+|++.|+.|+.+|.
T Consensus       133 ~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~---DG~~DP~~lC~ala~~A~~~GA~viE~cp  209 (856)
T KOG2844|consen  133 QRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPG---DGVMDPAGLCQALARAASALGALVIENCP  209 (856)
T ss_pred             HHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCC---CcccCHHHHHHHHHHHHHhcCcEEEecCC
Confidence            333344455555555555432111            111222222221   111 1122223455567899999999999


Q ss_pred             EEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          289 VKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       289 V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      |++|..+.  ++..||++..+    .|++. .||-|||.+ .-..=.++|
T Consensus       210 V~~i~~~~--~~~~gVeT~~G----~iet~-~~VNaaGvW-Ar~Vg~m~g  251 (856)
T KOG2844|consen  210 VTGLHVET--DKFGGVETPHG----SIETE-CVVNAAGVW-AREVGAMAG  251 (856)
T ss_pred             cceEEeec--CCccceeccCc----ceecc-eEEechhHH-HHHhhhhcC
Confidence            99998876  34448987654    58897 599999964 333445555

>KOG4254|consensus

Probab=98.61  E-value=3.1e-07  Score=93.71  Aligned_cols=61  Identities=23%  Similarity=0.231  Sum_probs=49.5

Q ss_pred             chhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760          266 SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       266 ~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ++....+.+.+++.|.+|.+++.|.+|+.|+  ++|+||.+.++ +  ++++ |.||-.|+-+.|=.
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG-~--ev~s-k~VvSNAt~~~Tf~  324 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADG-T--EVRS-KIVVSNATPWDTFE  324 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCC-c--EEEe-eeeecCCchHHHHH
Confidence            4444456677899999999999999999998  89999998764 3  5777 57888888887763

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.60  E-value=3e-07  Score=96.25  Aligned_cols=37  Identities=27%  Similarity=0.330  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...+||+|||||++|+++|+.|++ .|.+|+||||.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence            456999999999999999999999 8999999999853

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.60  E-value=5.1e-07  Score=94.49  Aligned_cols=32  Identities=38%  Similarity=0.729  Sum_probs=31.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      |||||||||+||+++|+.|++ .|.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence            799999999999999999999 89999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG2853|consensus

Probab=98.60  E-value=1.2e-06  Score=86.50  Aligned_cols=41  Identities=22%  Similarity=0.387  Sum_probs=35.0

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhc---CCCCeEEEEcCCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSE---IPHWKILLLEAGHYF  105 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe---~~G~~VLVLEaG~~~  105 (511)
                      ..+.+.||+|||||..|+++|+.|.|   +.|.+|+|+|+....
T Consensus        82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            44567999999999999999999976   367999999998654

>KOG1298|consensus

Probab=98.56  E-value=4.3e-07  Score=91.01  Aligned_cols=36  Identities=31%  Similarity=0.377  Sum_probs=33.3

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ....+||||||+|.+|+++|+.|++ .|+||+||||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhh-CCcEEEEEecc
Confidence            3457999999999999999999999 79999999996

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.56  E-value=8.9e-07  Score=94.32  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..+|||||||||+||+++|..||+ .|++|+|||+..
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~   72 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKL   72 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence            457999999999999999999999 899999999974

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.54  E-value=1.9e-07  Score=101.02  Aligned_cols=61  Identities=15%  Similarity=0.097  Sum_probs=44.6

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      ....|...+++.|++|++++.|++|..++  +++++|++.. ++  ++.|+ .||+|++...+...|
T Consensus       221 l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~-g~--~~~ad-~VI~a~~~~~~~~~l  281 (502)
T TIGR02734       221 LVAAMAKLAEDLGGELRLNAEVIRIETEG--GRATAVHLAD-GE--RLDAD-AVVSNADLHHTYRRL  281 (502)
T ss_pred             HHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEECC-CC--EEECC-EEEECCcHHHHHHHh
Confidence            33445555677899999999999999876  6788887643 33  57897 599988875555444

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK06847 hypothetical protein; Provisional

Probab=98.53  E-value=6.6e-07  Score=92.94  Aligned_cols=37  Identities=27%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+..||+|||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus         2 ~~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~   38 (375)
T PRK06847          2 AAVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE   38 (375)
T ss_pred             CCcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            346899999999999999999999 8999999999753

>PRK07208 hypothetical protein; Provisional

Probab=98.53  E-value=2e-06  Score=92.45  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=36.1

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      |.+..||||||||.+|+++|++|++ .|++|+|+|+.+....
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~GG   41 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVGG   41 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCCc
Confidence            3456899999999999999999999 7999999999876543

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.53  E-value=1e-06  Score=95.43  Aligned_cols=33  Identities=33%  Similarity=0.554  Sum_probs=31.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |||||||+|.+|+.+|..+++ .|.+|+|+|+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence            799999999999999999999 899999999874

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.53  E-value=2.5e-07  Score=98.63  Aligned_cols=33  Identities=30%  Similarity=0.580  Sum_probs=31.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +||+||||||+||+.+|.++++ .|++|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence            5999999999999999999999 89999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG2404|consensus

Probab=98.52  E-value=2e-07  Score=91.20  Aligned_cols=49  Identities=29%  Similarity=0.324  Sum_probs=39.9

Q ss_pred             CcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcH
Q psy760          280 NLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       280 gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      -++|.++++|++|+.++  ++|.||++.+ +|+...+..+ .||+|+|+|.-.
T Consensus       159 ~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~-~VVlatGGf~ys  208 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGD-AVVLATGGFGYS  208 (477)
T ss_pred             HHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecC-ceEEecCCcCcC
Confidence            48999999999999554  8999999984 4555566676 699999999863

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.51  E-value=1.1e-06  Score=92.31  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=31.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||||||||+||+++|+.||+ .|++|+|||+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence            699999999999999999999 899999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.51  E-value=1.9e-07  Score=95.36  Aligned_cols=36  Identities=36%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      +|||||||||++|+++|+.|++ .|++|+|+||.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence            5899999999999999999999 89999999998653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.51  E-value=1.1e-06  Score=96.39  Aligned_cols=60  Identities=13%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+.+.|++|+.++.+++|+.+++ ++|+||....  +++.+.++|+ .||||||++..
T Consensus       129 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~  190 (570)
T PRK05675        129 LHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSK-ATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence            33454556678999999999999998643 7999998753  5677788996 89999999874

>PLN02985 squalene monooxygenase

Probab=98.50  E-value=1.8e-06  Score=93.56  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..++||||||||++|+++|..|++ .|++|+|+||..
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~   76 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDL   76 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcC
Confidence            457999999999999999999999 899999999974

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.49  E-value=1.4e-06  Score=94.02  Aligned_cols=62  Identities=16%  Similarity=0.025  Sum_probs=43.6

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC--CeEEEEEeCcEEEEccCCCCcHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--GIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~--g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ....|...+++.|++|+++++|++|+.++  ++++||.+..+  ++..++.|+ .||+++....+.+
T Consensus       234 l~~aL~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~  297 (492)
T TIGR02733       234 LSDRLVEALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLE  297 (492)
T ss_pred             HHHHHHHHHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHH
Confidence            33345555667899999999999999886  67888877643  112368897 5888887643333

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.49  E-value=2.9e-06  Score=87.21  Aligned_cols=41  Identities=37%  Similarity=0.495  Sum_probs=35.8

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcC----CCCeEEEEcCCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEI----PHWKILLLEAGHYF  105 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~----~G~~VLVLEaG~~~  105 (511)
                      .|...||+||||+|++|+.+|++++.+    +..+|+++|.|...
T Consensus        14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~   58 (486)
T COG2509          14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI   58 (486)
T ss_pred             HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence            556789999999999999999999974    37899999999754

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.49  E-value=4.5e-07  Score=97.36  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...||+||||||++|+.+|.+|++ .|++|+|+|+.+
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~   37 (471)
T PRK06467          2 EIKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS   37 (471)
T ss_pred             CccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            346999999999999999999999 899999999864

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.49  E-value=8.1e-07  Score=92.88  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=32.8

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ++|||||||||++|+++|..|++ .|++|+|+|+.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            46999999999999999999999 899999999975

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.48  E-value=2.9e-06  Score=87.97  Aligned_cols=65  Identities=22%  Similarity=0.238  Sum_probs=47.8

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      +..+.++.|+++.++++|++|...++ ++ .-|.+.  ..++..+++|+ -|+|.||+ ++=.||+.|||.
T Consensus       188 ~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~  254 (488)
T PF06039_consen  188 VEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP  254 (488)
T ss_pred             HHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh
Confidence            33334566999999999999998875 32 123332  34566799996 79999998 577899999984

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.48  E-value=1.1e-06  Score=92.06  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+||+|||||++|+++|+.|++ .|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence            4899999999999999999999 8999999999863

>PRK08244 hypothetical protein; Provisional

Probab=98.48  E-value=1.4e-06  Score=94.04  Aligned_cols=35  Identities=31%  Similarity=0.493  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||+|||||++|+++|..|++ .|.+|+||||.+.
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~   36 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKE   36 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            4899999999999999999999 8999999999864

>PRK06184 hypothetical protein; Provisional

Probab=98.48  E-value=2.5e-06  Score=92.40  Aligned_cols=35  Identities=37%  Similarity=0.484  Sum_probs=32.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||+|||||++|+++|+.|++ .|.+|+||||.+.
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~   37 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPE   37 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            5999999999999999999999 8999999999754

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.48  E-value=6.7e-07  Score=97.94  Aligned_cols=36  Identities=28%  Similarity=0.507  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...|||||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus         2 ~~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~   37 (555)
T TIGR03143         2 EEIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD   37 (555)
T ss_pred             CCcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            346999999999999999999999 899999999863

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK11445 putative oxidoreductase; Provisional

Probab=98.47  E-value=3.1e-06  Score=87.38  Aligned_cols=33  Identities=33%  Similarity=0.682  Sum_probs=31.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |||+|||||+||+++|..|++ . .+|+|||+.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence            899999999999999999999 7 99999999863

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.46  E-value=9.2e-07  Score=94.39  Aligned_cols=34  Identities=41%  Similarity=0.712  Sum_probs=32.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ++||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccc
Confidence            36999999999999999999999 89999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.45  E-value=2.1e-06  Score=90.10  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCC--CCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~--G~~VLVLEaG~~  104 (511)
                      .|||+|||||++|+++|..|++ .  |++|+|+||.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCCc
Confidence            3899999999999999999999 5  599999999863

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.45  E-value=1.8e-06  Score=90.85  Aligned_cols=34  Identities=38%  Similarity=0.585  Sum_probs=32.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +|||+|||||++|+++|+.|++ .|++|+|+|+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            5899999999999999999999 899999999985

>PRK07045 putative monooxygenase; Reviewed

Probab=98.45  E-value=1.6e-06  Score=90.73  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~   39 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAAR   39 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCc
Confidence            46899999999999999999999 8999999999864

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.45  E-value=1e-06  Score=91.95  Aligned_cols=36  Identities=25%  Similarity=0.500  Sum_probs=33.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||||||||++|+++|+.|++ .|.+|+|+|+++.
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            35899999999999999999999 8999999999864

>PRK06116 glutathione reductase; Validated

Probab=98.45  E-value=5.2e-07  Score=96.30  Aligned_cols=35  Identities=40%  Similarity=0.641  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..+||+||||||+||+.+|.+|++ .|++|+|+|++
T Consensus         2 ~~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~   36 (450)
T PRK06116          2 TKDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK   36 (450)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            346999999999999999999999 89999999986

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.44  E-value=1.3e-06  Score=94.60  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=42.6

Q ss_pred             hHHhhHhhhhCCCc--EEEeCceEEEEEEcCCCCc--EEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          268 AKDYIDPIKKRCNL--TVKDSSFVKKILIDPVTKK--ACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       268 ~~~~L~~~~~r~gv--~v~~~t~V~~I~~d~~~~r--a~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      ...||...+++-++  .|..||+|++|...++...  -.-|.+..+++..+-..+ .||+|+|.+..|.+=.
T Consensus        86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD-~VvvatG~~~~P~~P~  156 (531)
T PF00743_consen   86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD-AVVVATGHFSKPNIPE  156 (531)
T ss_dssp             HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC-EEEEEE-SSSCESB--
T ss_pred             HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC-eEEEcCCCcCCCCCCh
Confidence            44577777776665  6899999999987653111  112333344555455566 6999999999997654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.43  E-value=1e-06  Score=94.43  Aligned_cols=35  Identities=23%  Similarity=0.533  Sum_probs=32.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..||+||||||++|+.+|.+|++ .|++|+|+|+++
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~   38 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYR   38 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence            45999999999999999999999 899999999864

>PRK06370 mercuric reductase; Validated

Probab=98.43  E-value=7.2e-07  Score=95.60  Aligned_cols=37  Identities=35%  Similarity=0.521  Sum_probs=33.7

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |..+||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~   38 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL   38 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            4457999999999999999999999 899999999863

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.43  E-value=4.2e-06  Score=90.97  Aligned_cols=120  Identities=18%  Similarity=0.155  Sum_probs=74.2

Q ss_pred             cccccccCCCCChHHHHHHHHHHHcCCCCCCCC-----------CCCccceeecccccCCCcccchhHHhhHhhhhCCCc
Q psy760          213 GFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN-----------GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNL  281 (511)
Q Consensus       213 G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~-----------~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv  281 (511)
                      |.+.+..+.........+++.+++.|++...++           .....|..+++...-   ........+...+.+.|+
T Consensus        67 g~L~va~~~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~v---dp~~l~~al~~~A~~~Ga  143 (516)
T TIGR03377        67 GGLFITLPEDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTV---DPFRLVAANVLDAQEHGA  143 (516)
T ss_pred             CceEEecCcccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEE---CHHHHHHHHHHHHHHcCC
Confidence            445555554444555667777778887642111           111223333221111   111112223344677899


Q ss_pred             EEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          282 TVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       282 ~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      +|+++++|++|..++  ++++||++.+  +++..+|+|+ .||+|||+ ++.+++...|+
T Consensus       144 ~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~  199 (516)
T TIGR03377       144 RIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL  199 (516)
T ss_pred             EEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence            999999999998876  6888998863  4555689997 69999997 58888887775

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02697 lycopene epsilon cyclase

Probab=98.43  E-value=1.4e-06  Score=94.08  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=32.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ...|||||||||+||+++|..|++ .|++|+|||++
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~  140 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPD  140 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCc
Confidence            346999999999999999999999 89999999975

>PRK06834 hypothetical protein; Provisional

Probab=98.43  E-value=3.2e-06  Score=91.09  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||||||||++|+++|+.|++ .|.+|+||||.+.
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~   37 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN   37 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            5999999999999999999999 8999999999753

>PRK06126 hypothetical protein; Provisional

Probab=98.42  E-value=7.3e-06  Score=89.69  Aligned_cols=36  Identities=31%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..++||+|||||++|+++|+.|++ .|++|+|+||.+
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~   40 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKD   40 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            346999999999999999999999 899999999875

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.42  E-value=3.4e-06  Score=88.00  Aligned_cols=62  Identities=13%  Similarity=0.086  Sum_probs=47.8

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS  337 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~S  337 (511)
                      |...+++.|++++.+++|+++..++  +++++|.+.. ++...++|+ .||||+|++-|..|+...
T Consensus       269 L~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~-g~~~~l~AD-~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       269 LKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRN-HRDIPLRAD-HFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecC-CccceEECC-EEEEccCCCcCHHHHhhc
Confidence            4445678899999999999999887  6788876543 323478998 599999998788886653

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK09126 hypothetical protein; Provisional

Probab=98.42  E-value=1.6e-06  Score=90.70  Aligned_cols=35  Identities=34%  Similarity=0.591  Sum_probs=33.1

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +|||||||||++|+++|..|++ .|++|+|+||.+.
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence            5999999999999999999999 8999999999864

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.42  E-value=7.5e-07  Score=93.20  Aligned_cols=33  Identities=39%  Similarity=0.575  Sum_probs=31.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .+||+|||||++|+++|..|++ .|++|+|||+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence            5899999999999999999999 89999999998

>PRK08013 oxidoreductase; Provisional

Probab=98.41  E-value=8.8e-07  Score=93.07  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=33.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +|||+|||||++|+++|+.|++ .|++|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence            5899999999999999999999 8999999999864

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.41  E-value=9.9e-07  Score=93.33  Aligned_cols=36  Identities=39%  Similarity=0.729  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..+||+||||+|++|.++|.++|+ .|.+|+|+|+.+
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecC
Confidence            357999999999999999999999 798899999984

>PRK07190 hypothetical protein; Provisional

Probab=98.41  E-value=3.9e-06  Score=90.44  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||||||||++|+++|+.|++ .|.+|+||||.+.
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~   39 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDG   39 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCc
Confidence            35899999999999999999999 8999999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.40  E-value=1.3e-06  Score=93.96  Aligned_cols=36  Identities=42%  Similarity=0.738  Sum_probs=33.4

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      |...||+||||||+||+.+|.+|++ .|++|+|+|++
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~   36 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKG   36 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEcc
Confidence            3457999999999999999999999 89999999986

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.40  E-value=1.7e-06  Score=91.97  Aligned_cols=34  Identities=35%  Similarity=0.633  Sum_probs=32.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||||+||+.+|.+|++ .|++|+|+|+++
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~   36 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK   36 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence            6999999999999999999999 899999999975

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.40  E-value=1.2e-06  Score=91.58  Aligned_cols=34  Identities=41%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCC---CCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIP---HWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~---G~~VLVLEaG  102 (511)
                      ..+||+|||||++|+++|+.|++ .   |.+|+|+||.
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence            35899999999999999999998 6   9999999995

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.40  E-value=4.7e-07  Score=94.79  Aligned_cols=34  Identities=35%  Similarity=0.485  Sum_probs=31.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .+|||||||||.||+-||...|+ -|.+++||--.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~   36 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLN   36 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcC
Confidence            45999999999999999999999 89999999655

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.39  E-value=2.2e-06  Score=89.12  Aligned_cols=34  Identities=38%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ||||||||++|+++|+.|++ .|.+|+|+||.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence            89999999999999999999 89999999999753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.39  E-value=2.3e-06  Score=91.14  Aligned_cols=34  Identities=32%  Similarity=0.711  Sum_probs=32.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||||++|+.+|.+|++ .|++|+|+|+++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~   36 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN   36 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence            5999999999999999999999 899999999974

>KOG2665|consensus

Probab=98.38  E-value=2.2e-06  Score=83.96  Aligned_cols=214  Identities=19%  Similarity=0.217  Sum_probs=114.3

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      .....||.||||||+.|++.|.+|.-. ++.+|+|||+.......                       |.     +-   
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h-----------------------qS-----gh---   92 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH-----------------------QS-----GH---   92 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhcee-----------------------ec-----cc---
Confidence            345679999999999999999999853 89999999998643210                       00     00   


Q ss_pred             ccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCC
Q psy760          144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN  223 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~  223 (511)
                                 -|..+-+++|..+..  ..+  ++=..  ..+-+..|+++-+          --+...|.|-+......
T Consensus        93 -----------NSgViHaGIYY~P~S--LKA--klCV~--G~~LlY~yc~e~~----------IpyKk~GKLIVAt~~~E  145 (453)
T KOG2665|consen   93 -----------NSGVIHAGIYYKPGS--LKA--KLCVE--GRELLYEYCDEKK----------IPYKKTGKLIVATESEE  145 (453)
T ss_pred             -----------ccceeeeeeeeCCcc--cch--hhhhc--cHHHHHHHhhhcC----------CChhhcceEEEEeChhh
Confidence                       011111222222211  000  00000  0111223333211          12335678888777777


Q ss_pred             ChHHHHHHHHHHHcCCCCC-CCCCCCc-------cceeecccccCCCc-ccchhHHhhHhhhhCCCcEEEeCceEEEEEE
Q psy760          224 TPMLDAFLQAGMEAGYPLV-DYNGKTQ-------TGFARAQATLHKRS-RRSSAKDYIDPIKKRCNLTVKDSSFVKKILI  294 (511)
Q Consensus       224 ~~~~~~~~~a~~~~G~~~~-~~~~~~~-------~G~~~~~~~~~~g~-r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~  294 (511)
                      -|..+.+++...+.|++-. .+.+.+.       .|..... ..+.|. .+....--+..--+..|.++.+|.+|.++..
T Consensus       146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~-sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~  224 (453)
T KOG2665|consen  146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALL-SPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQ  224 (453)
T ss_pred             cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhc-CCCcceeehHHHHHHHHHHHHHhcccccccceeccchh
Confidence            7888888888888877752 2222111       1111000 001111 1222222222224567999999999999977


Q ss_pred             cCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          295 DPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       295 d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      +++..--.-+.+ .+++..+++.+ .||-||| +.+.++-.+||.-
T Consensus       225 n~~~~~~Ypivv-~ngk~ee~r~~-~~vtc~g-l~sdr~aa~sgc~  267 (453)
T KOG2665|consen  225 NKEATFSYPIVV-LNGKGEEKRTK-NVVTCAG-LQSDRCAALSGCE  267 (453)
T ss_pred             ccCCCCCCceEE-ecCccceeEEe-EEEEecc-ccHhHHHHHhCCC
Confidence            653111111222 23344467774 4555555 8899999999864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.38  E-value=6.9e-06  Score=85.48  Aligned_cols=33  Identities=45%  Similarity=0.491  Sum_probs=31.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~  104 (511)
                      ||+|||||++|+++|..|++ .| ++|+|+||.+.
T Consensus         1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~   34 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSP   34 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCc
Confidence            89999999999999999999 89 99999999864

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.38  E-value=1.5e-05  Score=83.87  Aligned_cols=60  Identities=20%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      .|....++.|+++++++.|+++..++  ++++++. ..+++...++|+ .||+|+|.+.+.-|.
T Consensus       264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~  323 (422)
T PRK05329        264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV  323 (422)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence            45455667899999999999998775  5666665 344555679997 699999998766553

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.37  E-value=2.6e-06  Score=85.23  Aligned_cols=33  Identities=42%  Similarity=0.679  Sum_probs=31.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |||+|||||++|+.+|..|++ .|.+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence            799999999999999999999 799999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.37  E-value=1.4e-06  Score=93.22  Aligned_cols=35  Identities=40%  Similarity=0.749  Sum_probs=32.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence            46999999999999999999999 799999999864

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.36  E-value=2.5e-06  Score=91.56  Aligned_cols=33  Identities=36%  Similarity=0.676  Sum_probs=31.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +||+||||||+||+.+|.+|++ .|++|+|+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~   35 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGR   35 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            5999999999999999999999 89999999974

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.33  E-value=3.6e-06  Score=88.15  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+||+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            4899999999999999999999 8999999999863

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.33  E-value=4.3e-06  Score=87.29  Aligned_cols=36  Identities=22%  Similarity=0.347  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +.|||||||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~   41 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP   41 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence            46999999999999999999999 7999999999753

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.2e-06  Score=85.17  Aligned_cols=35  Identities=43%  Similarity=0.694  Sum_probs=31.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~  103 (511)
                      +.||+||||||+||++||..+++ .+++ ++|+|++.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence            46999999999999999999999 8988 77777763

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.31  E-value=2.3e-06  Score=89.04  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+|||||++|+++|..|++ .|++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence            799999999999999999999 899999999974

>PLN02463 lycopene beta cyclase

Probab=98.31  E-value=7.4e-06  Score=87.09  Aligned_cols=36  Identities=28%  Similarity=0.516  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...|||||||||+||+++|..|++ .|.+|+|||+.+
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~   61 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSP   61 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCc
Confidence            346999999999999999999999 899999999864

>PRK07588 hypothetical protein; Provisional

Probab=98.30  E-value=4.4e-06  Score=87.42  Aligned_cols=33  Identities=30%  Similarity=0.266  Sum_probs=31.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCC
Confidence            89999999999999999999 8999999999853

>KOG1399|consensus

Probab=98.30  E-value=4.2e-06  Score=88.32  Aligned_cols=70  Identities=16%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             hHHhhHhhhhCCCc--EEEeCceEEEEEEcCCCCcEEEEEEEECCe-EEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          268 AKDYIDPIKKRCNL--TVKDSSFVKKILIDPVTKKACGVLATIKGI-DHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       268 ~~~~L~~~~~r~gv--~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~-~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ...||...|++-++  .|..++.|.++...++  ....|.+..+++ ....-.+ .||+|+|-+..|.+-+.+|.+
T Consensus        92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~~~~~ifd-~VvVctGh~~~P~~P~~~g~~  164 (448)
T KOG1399|consen   92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQIEEEIFD-AVVVCTGHYVEPRIPQIPGPG  164 (448)
T ss_pred             HHHHHHHHHHhcChhhheEecccEEEEeeccC--CceeEEEecCCcceeEEEee-EEEEcccCcCCCCCCcCCCCc
Confidence            44588887877665  6888888888866542  234455544322 2234455 699999998548888887765

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.29  E-value=8.1e-06  Score=89.20  Aligned_cols=37  Identities=41%  Similarity=0.513  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..++||+|||||++|+++|+.|++ .|.+|+||||.+.
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~   44 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPT   44 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            456999999999999999999999 8999999999864

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.28  E-value=5.8e-06  Score=88.53  Aligned_cols=33  Identities=36%  Similarity=0.715  Sum_probs=31.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~   33 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE   33 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            4999999999999999999999 89999999983

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07233 hypothetical protein; Provisional

Probab=98.28  E-value=7e-06  Score=86.76  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      +|||||||++|+++|+.|++ .|++|+|||+.+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~GG   36 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQLGG   36 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCCCC
Confidence            58999999999999999999 7999999999987643

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.28  E-value=6.4e-06  Score=87.61  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=34.2

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~  104 (511)
                      ..+.+||+|||||.+|+++|++|.+ .|.. ++|+||...
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~   43 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDD   43 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCC
Confidence            3457999999999999999999999 7888 999999865

>PLN02507 glutathione reductase

Probab=98.27  E-value=4.4e-06  Score=90.34  Aligned_cols=34  Identities=26%  Similarity=0.443  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      ..+||+||||||++|..+|.+|++ .|.+|+|+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            447999999999999999999999 8999999997

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.27  E-value=4.5e-06  Score=87.82  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=32.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..+||+|||||++|+++|..|++ .|++|+|+|+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence            35899999999999999999999 89999999996

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.26  E-value=3.3e-06  Score=91.67  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=31.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      ...|||+|||||+||+++|.+|++ .|++|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            346999999999999999999999 8999999974

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.26  E-value=9e-06  Score=85.10  Aligned_cols=36  Identities=33%  Similarity=0.378  Sum_probs=33.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...||+|||||++|+++|..|++ .|++|+|+||.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence            45899999999999999999999 8999999999853

>PRK06753 hypothetical protein; Provisional

Probab=98.25  E-value=5.7e-06  Score=85.88  Aligned_cols=33  Identities=33%  Similarity=0.491  Sum_probs=31.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~   34 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNES   34 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            79999999999999999999 8999999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.25  E-value=6.8e-06  Score=89.32  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=31.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      ...||++|||||+||+.+|.+|++ .|++|+|+|+
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            446999999999999999999999 8999999975

>PRK14694 putative mercuric reductase; Provisional

Probab=98.24  E-value=4.6e-06  Score=89.53  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..||+||||||+||+++|.+|++ .|++|+|+|++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence            47999999999999999999999 799999999873

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=98.23  E-value=1e-05  Score=88.75  Aligned_cols=60  Identities=18%  Similarity=0.334  Sum_probs=48.4

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ....|...+++.|++|++++.|++|+.++  ++|+||....  +++...++|+ .||||||++..
T Consensus       121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~  182 (565)
T TIGR01816       121 ILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR  182 (565)
T ss_pred             HHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence            34455555667899999999999999864  8999998753  5677788995 89999999865

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.22  E-value=2.4e-05  Score=85.72  Aligned_cols=37  Identities=27%  Similarity=0.418  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..++||+|||||++|+++|+.|++ .|.+|+|+||.+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            467999999999999999999999 8999999999863

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.22  E-value=8.8e-06  Score=84.99  Aligned_cols=33  Identities=30%  Similarity=0.635  Sum_probs=31.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ||||||||++|+++|.+|++ .|.+|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence            89999999999999999998 7999999999854

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PLN02546 glutathione reductase

Probab=98.21  E-value=3.8e-06  Score=91.63  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      .+|||||||+|++|..+|.+||+ .|++|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            46999999999999999999999 8999999996

>PTZ00367 squalene epoxidase; Provisional

Probab=98.20  E-value=9.6e-06  Score=88.59  Aligned_cols=35  Identities=40%  Similarity=0.596  Sum_probs=32.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||++|+++|..|++ .|++|+|+||..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence            46999999999999999999999 899999999974

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.20  E-value=7.9e-06  Score=85.13  Aligned_cols=33  Identities=45%  Similarity=0.802  Sum_probs=30.7

Q ss_pred             cEEEECCCcHHHHHHHHH--hcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRL--SEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~L--Ae~~G~~VLVLEaG~~  104 (511)
                      ||||||||+||+++|.+|  ++ .|.+|+|||+.+.
T Consensus         1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~   35 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPK   35 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCcc
Confidence            899999999999999999  66 8999999999864

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.19  E-value=6.6e-06  Score=87.78  Aligned_cols=56  Identities=16%  Similarity=0.165  Sum_probs=39.2

Q ss_pred             chhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760          266 SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       266 ~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa  327 (511)
                      .....+|...+.+.|++++.++ |+++..+++ +.+++|+... |+  +++|+ -||=|+|-
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~-g~--~i~ad-~~IDASG~  209 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDD-GR--TIEAD-FFIDASGR  209 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETT-SE--EEEES-EEEE-SGG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECC-CC--EEEEe-EEEECCCc
Confidence            4556688887888899999875 888888774 7888887654 33  78997 67778873

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK07538 hypothetical protein; Provisional

Probab=98.19  E-value=7.1e-06  Score=86.59  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=31.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence            89999999999999999999 8999999999753

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.19  E-value=2e-05  Score=84.21  Aligned_cols=54  Identities=11%  Similarity=-0.007  Sum_probs=39.4

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECC--eEEEEEeCcEEEEccCC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKG--IDHKILARKEVILSAGA  327 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g--~~~~v~A~k~VILAAGa  327 (511)
                      +...+++.|++|+++++|++|..+++ ++++||++..++  +.+++.|+ .||+|+..
T Consensus       219 l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~  274 (453)
T TIGR02731       219 IVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTAD-AYVSAMPV  274 (453)
T ss_pred             HHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence            33344567999999999999987553 678899886432  22257887 69999875

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK07236 hypothetical protein; Provisional

Probab=98.18  E-value=2.9e-05  Score=81.12  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=32.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..||||||||++|+++|..|++ .|.+|+|+||.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence            4899999999999999999999 899999999975

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.17  E-value=1.7e-05  Score=92.44  Aligned_cols=36  Identities=25%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+|||||+||+++|..|++ .|++|+|+|+++.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~  197 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPE  197 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            46899999999999999999999 8999999999853

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.17  E-value=5.9e-06  Score=84.16  Aligned_cols=114  Identities=18%  Similarity=0.225  Sum_probs=65.2

Q ss_pred             CCcccccccCCCCChHHHHHHHHHHHcCCCCCCCCC-----------CCccceeecccccCCCcccchhHHhhHhhhhCC
Q psy760          211 TQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNG-----------KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRC  279 (511)
Q Consensus       211 ~~G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~-----------~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~  279 (511)
                      ..|.+.+...+......+...+..++.|++...++.           ....+..+.+..  .-.........|...+++.
T Consensus        73 ~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~--g~v~p~~l~~~l~~~~~~~  150 (337)
T TIGR02352        73 QCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDD--AHVDPRALLKALEKALEKL  150 (337)
T ss_pred             EccEEEEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCC--ceEChHHHHHHHHHHHHHc
Confidence            345565555444444555566666677765422221           111111111110  0012223333454556778


Q ss_pred             CcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          280 NLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       280 gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      |++++.+++|+.|..++  +++++|... ++   +++|+ .||+|+|+ +++.++
T Consensus       151 g~~~~~~~~v~~i~~~~--~~~~~v~~~-~g---~~~a~-~vV~a~G~-~~~~l~  197 (337)
T TIGR02352       151 GVEIIEHTEVQHIEIRG--EKVTAIVTP-SG---DVQAD-QVVLAAGA-WAGELL  197 (337)
T ss_pred             CCEEEccceEEEEEeeC--CEEEEEEcC-CC---EEECC-EEEEcCCh-hhhhcc
Confidence            99999999999998765  567777642 23   68897 59999997 566654

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.16  E-value=1.3e-05  Score=86.10  Aligned_cols=60  Identities=12%  Similarity=0.058  Sum_probs=42.8

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCC--CC-cEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPV--TK-KACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~--~~-ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      +..++.|++|+++++|++|..+++  +. ++++|++..++...++.|+ .||+|+......+||
T Consensus       227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll  289 (474)
T TIGR02732       227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL  289 (474)
T ss_pred             HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence            344568999999999999998642  22 4888887543211257897 699999986666665

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PTZ00058 glutathione reductase; Provisional

Probab=98.15  E-value=2.8e-06  Score=92.67  Aligned_cols=35  Identities=34%  Similarity=0.653  Sum_probs=32.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||+||||||+||..+|.++++ .|.+|+|+|++.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~   81 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDY   81 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEeccc
Confidence            57999999999999999999999 899999999863

>PRK06996 hypothetical protein; Provisional

Probab=98.14  E-value=9.1e-06  Score=85.35  Aligned_cols=36  Identities=36%  Similarity=0.585  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCC----CeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPH----WKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G----~~VLVLEaG~  103 (511)
                      ..++||+|||||++|+++|+.|++ .|    .+|+|+|+.+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCC
Confidence            457999999999999999999998 55    5899999975

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.09  E-value=3.8e-06  Score=65.10  Aligned_cols=32  Identities=25%  Similarity=0.498  Sum_probs=28.7

Q ss_pred             EECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           74 IVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        74 VVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      |||||++|+++|++|++ .|.+|+|+|+.+...
T Consensus         1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHH-CCCcEEEEecCcccC
Confidence            89999999999999999 799999999997654

...

>PRK10262 thioredoxin reductase; Provisional

Probab=98.08  E-value=3.4e-05  Score=78.50  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .+.+||+|||||+||+.+|..|++ .|++|+++|+.
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence            457999999999999999999999 79999999964

>PRK05868 hypothetical protein; Validated

Probab=98.05  E-value=4.9e-05  Score=79.10  Aligned_cols=34  Identities=18%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .||+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Confidence            389999999999999999999 8999999999854

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.04  E-value=5.3e-05  Score=79.60  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=31.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -+|+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            369999999999999999999 8999999999753

>PLN02487 zeta-carotene desaturase

Probab=98.04  E-value=3.9e-05  Score=83.76  Aligned_cols=60  Identities=12%  Similarity=0.001  Sum_probs=42.8

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCC-CC--cEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPV-TK--KACGVLATIKGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~-~~--ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      +..++.|++|++++.|++|..+.+ ++  +++||++.+++....+.|+ .||+|++.....+||
T Consensus       303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence            345678999999999999999742 13  5899988533333357887 699999865444444

>KOG2960|consensus

Probab=98.03  E-value=2.5e-06  Score=79.00  Aligned_cols=69  Identities=25%  Similarity=0.316  Sum_probs=51.6

Q ss_pred             HHhhccccccccchhhhhhhhccccchhhccccCCCCCcccC----------CcccEEEECCCcHHHHHHHHHhcC-CCC
Q psy760           26 YLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLL----------LEYDFIIVGAGPGGCTVANRLSEI-PHW   94 (511)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~DvIVVGgG~aGl~aA~~LAe~-~G~   94 (511)
                      .+.+.+++....+.+-..+.|       .|+.++..++ .|.          .+.||||||+|.+|+++|+..+++ +..
T Consensus        31 ~p~~~~l~~~~~s~d~s~F~F-------aPIrEStVSR-aMTrRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdl  102 (328)
T KOG2960|consen   31 TPVTHCLSDIVKSEDWSDFKF-------APIRESTVSR-AMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDL  102 (328)
T ss_pred             Ccccccccccccccccccccc-------cchhHHHHHH-HHHHHHHHHHHhhhccceEEECCCccccceeeeeeccCCCc
Confidence            455556666666666666777       5666665554 222          356999999999999999999964 999


Q ss_pred             eEEEEcCC
Q psy760           95 KILLLEAG  102 (511)
Q Consensus        95 ~VLVLEaG  102 (511)
                      +|.+||+.
T Consensus       103 kvaIIE~S  110 (328)
T KOG2960|consen  103 KVAIIESS  110 (328)
T ss_pred             eEEEEEee
Confidence            99999986

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.02  E-value=3.5e-05  Score=85.65  Aligned_cols=40  Identities=40%  Similarity=0.557  Sum_probs=35.1

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.+++||+|||||++|+++|+.|++.+|.+|+|||+.+.
T Consensus        28 ~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         28 DLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             cCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            3567899999999999999999999822999999999754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.00  E-value=1.5e-05  Score=85.87  Aligned_cols=33  Identities=33%  Similarity=0.669  Sum_probs=31.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +||+||||+|++|..+|.++++ .|++|+|+|+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            5999999999999999999999 89999999985

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG2311|consensus

Probab=98.00  E-value=1.2e-05  Score=82.75  Aligned_cols=35  Identities=29%  Similarity=0.550  Sum_probs=31.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ...|||||||||-|||-+|...|+ -|.+.++|-..
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHh-cCCceEEeecc
Confidence            567999999999999999999999 89998888654

>PRK09897 hypothetical protein; Provisional

Probab=98.00  E-value=8.4e-05  Score=80.53  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~  105 (511)
                      .+|+|||+|++|+++|.+|++. ...+|+|+|++...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            4799999999999999999873 34699999997643

>PRK14727 putative mercuric reductase; Provisional

Probab=97.99  E-value=4.2e-05  Score=82.41  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=33.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +..||+||||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~   49 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD   49 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            346999999999999999999999 899999999874

>KOG2852|consensus

Probab=97.98  E-value=7.3e-06  Score=79.47  Aligned_cols=63  Identities=21%  Similarity=0.226  Sum_probs=42.1

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      +..+.++.||+++.+. |.++.-+.  .|+.+|.... .+......+. .+|||+|. +|++||..-+|
T Consensus       154 ~sea~k~~~V~lv~Gk-v~ev~dEk--~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI  217 (380)
T KOG2852|consen  154 LSEAEKRGGVKLVFGK-VKEVSDEK--HRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI  217 (380)
T ss_pred             HHHHHhhcCeEEEEee-eEEeeccc--ccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence            3344567789998874 66775333  6777776552 1223456676 59999997 79999887554

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.98  E-value=0.00015  Score=75.09  Aligned_cols=39  Identities=33%  Similarity=0.459  Sum_probs=35.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .+..||||||+|.+||++|+.|.+ .|++|+|||+.+...
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~G   43 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRVG   43 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCcC
Confidence            467999999999999999999999 899999999987653

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.97  E-value=4.3e-05  Score=82.03  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |+||||+|++|+.+|..|++ .|.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            79999999999999999999 899999999864

>PLN02612 phytoene desaturase

Probab=97.97  E-value=0.00012  Score=80.39  Aligned_cols=38  Identities=32%  Similarity=0.448  Sum_probs=34.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+|+|||+|.+|+++|++|++ .|++|+|+|+.....
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~~g  129 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDVLG  129 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCCCC
Confidence            35799999999999999999999 899999999976543

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.95  E-value=4e-05  Score=78.67  Aligned_cols=62  Identities=24%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE---CCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI---KGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      ..|+.-++++..-.+..+++|++|..+.+.+. ..+++..   +|+..++.|+ .|||++|.  +|.+=
T Consensus        98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-~~~~V~~~~~~g~~~~~~ar-~vVla~G~--~P~iP  162 (341)
T PF13434_consen   98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-DLFRVTTRDSDGDGETYRAR-NVVLATGG--QPRIP  162 (341)
T ss_dssp             HHHHHHHHCCGTTTEEESEEEEEEEEEEETTE-EEEEEEEEETTS-EEEEEES-EEEE------EE---
T ss_pred             HHHHHHHHHhCCCceEECCEEEEEEEecCCCc-cEEEEEEeecCCCeeEEEeC-eEEECcCC--CCCCC
Confidence            44777677777766889999999988764232 3344433   3555689997 69999995  77653

>KOG1335|consensus

Probab=97.94  E-value=6.5e-05  Score=75.69  Aligned_cols=66  Identities=15%  Similarity=0.265  Sum_probs=47.6

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCc
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV  352 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~v  352 (511)
                      ..+++|+++++++.|+....+++ |.+ -|++.  .+++..+++++ .+.+|.|-  .|   ...|+|    |++.||..
T Consensus       261 ~L~kQgikF~l~tkv~~a~~~~d-g~v-~i~ve~ak~~k~~tle~D-vlLVsiGR--rP---~t~GLg----le~iGi~~  328 (506)
T KOG1335|consen  261 VLQKQGIKFKLGTKVTSATRNGD-GPV-EIEVENAKTGKKETLECD-VLLVSIGR--RP---FTEGLG----LEKIGIEL  328 (506)
T ss_pred             HHHhcCceeEeccEEEEeeccCC-Cce-EEEEEecCCCceeEEEee-EEEEEccC--cc---cccCCC----hhhccccc
Confidence            44568999999999999998875 333 34444  45677799998 78999995  56   445665    66666643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.89  E-value=0.00016  Score=80.91  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+|+|||||+||+++|..|++ .|++|+|+|+.+..
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~~  362 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPEI  362 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            46799999999999999999999 89999999997654

>TIGR03452 mycothione_red mycothione reductase

Probab=97.83  E-value=8.3e-05  Score=79.50  Aligned_cols=32  Identities=34%  Similarity=0.700  Sum_probs=27.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||+|++|..+|.++   .|.+|+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence            59999999999999986553   599999999863

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=97.81  E-value=0.00015  Score=77.52  Aligned_cols=32  Identities=34%  Similarity=0.756  Sum_probs=27.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||||++|..+|.++   .|.+|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence            49999999999999988763   599999999863

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.74  E-value=0.00035  Score=74.88  Aligned_cols=32  Identities=19%  Similarity=0.501  Sum_probs=30.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ++||||||+||+.+|.+|++ .|.+|+|+|++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCc
Confidence            69999999999999999999 899999999874

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.73  E-value=0.00056  Score=62.08  Aligned_cols=32  Identities=31%  Similarity=0.655  Sum_probs=27.4

Q ss_pred             EEECCCcHHHHHHHHHhcC----CCCeEEEEcCCCC
Q psy760           73 IIVGAGPGGCTVANRLSEI----PHWKILLLEAGHY  104 (511)
Q Consensus        73 IVVGgG~aGl~aA~~LAe~----~G~~VLVLEaG~~  104 (511)
                      +|||+|++|++++.+|.+.    ...+|.|+|+.+.
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~   36 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF   36 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence            5999999999999999874    3679999999543

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.71  E-value=3.1e-05  Score=80.90  Aligned_cols=34  Identities=26%  Similarity=0.523  Sum_probs=32.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ++||+|||||++|+++|..|++ .|++|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            4899999999999999999999 899999999874

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.70  E-value=0.00089  Score=70.65  Aligned_cols=33  Identities=27%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~  104 (511)
                      .|+|||||++|+++|..|++ .| .+|+|+||.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~-~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCK-HSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCCCEEEEecCCc
Confidence            58999999999999999998 67 59999999754

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.70  E-value=3.3e-05  Score=82.86  Aligned_cols=35  Identities=34%  Similarity=0.592  Sum_probs=32.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~   37 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY   37 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            36999999999999999999999 899999999863

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.69  E-value=0.00029  Score=82.16  Aligned_cols=37  Identities=27%  Similarity=0.296  Sum_probs=33.8

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+|+|||||+||+++|..|++ .|++|+|+|+.+..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence            46799999999999999999999 89999999998654

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.68  E-value=4e-05  Score=79.47  Aligned_cols=36  Identities=36%  Similarity=0.642  Sum_probs=32.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      +|++|||||++|+++|.+|++ .|.+|+|||+.+..+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~iG   37 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHIG   37 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCCC
Confidence            799999999999999999998 799999999976543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.65  E-value=5e-05  Score=74.99  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=33.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .||++|||+|.+|+++|..|++ .|.+||||||-+..+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHIG   37 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccCC
Confidence            3899999999999999998888 899999999987654

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=97.64  E-value=0.00039  Score=72.48  Aligned_cols=56  Identities=21%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      .|...+++ |++++++++|++|..++  ++ .+|+.. ++.  .++|+ .||+|+|+ +++.++.
T Consensus       140 ~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~-~g~--~~~a~-~vV~a~G~-~~~~l~~  195 (381)
T TIGR03197       140 ALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDA-NGE--VIAAS-VVVLANGA-QAGQLAQ  195 (381)
T ss_pred             HHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeC-CCC--EEEcC-EEEEcCCc-ccccccc
Confidence            44445567 99999999999998765  33 334332 332  47897 69999997 4555543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.64  E-value=0.00044  Score=69.05  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=31.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .-+|.|||+|.+|+++|+.|++  -++|+|+|++....
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rlG   43 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRLG   43 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhc--ccceEEEecccccc
Confidence            4679999999999999999998  47999999987653

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.64  E-value=4.3e-05  Score=82.18  Aligned_cols=34  Identities=35%  Similarity=0.653  Sum_probs=32.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      ..+||+||||||++|+++|.+|++ .|.+|+|||+
T Consensus         2 ~~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~   35 (475)
T PRK06327          2 SKQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA   35 (475)
T ss_pred             CcceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            346999999999999999999999 8999999998

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.62  E-value=0.0005  Score=54.85  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=30.0

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++|||||..|+-+|..|++ .|.+|.|+|+.+.
T Consensus         2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~   33 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDR   33 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSS
T ss_pred             EEEECcCHHHHHHHHHHHH-hCcEEEEEeccch
Confidence            7999999999999999999 8999999999863

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02576 protoporphyrinogen oxidase

Probab=97.62  E-value=5.4e-05  Score=81.84  Aligned_cols=40  Identities=28%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG~~~~  106 (511)
                      ...++||||||||.+||++|++|++ . |.+|+|+|+.+...
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvG   49 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVG   49 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCC
Confidence            3456899999999999999999999 7 89999999987664

>KOG0029|consensus

Probab=97.61  E-value=5.8e-05  Score=81.09  Aligned_cols=40  Identities=28%  Similarity=0.415  Sum_probs=35.8

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+..+|||||||+||++||..|.+ .|.+|+|||+-+..+
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRvG   51 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRVG   51 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCcC
Confidence            3456899999999999999999999 899999999987664

>TIGR02053 MerA mercuric reductase

Probab=97.58  E-value=5.7e-05  Score=80.99  Aligned_cols=33  Identities=27%  Similarity=0.544  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ||+||||||++|+.+|.+|++ .|++|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence            799999999999999999999 899999999965

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.57  E-value=0.00052  Score=73.06  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .|||||||+||+.+|.+|.+. ++.+|+|+|+.+.
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~   37 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            699999999999999999873 5789999999854

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.56  E-value=0.00034  Score=74.46  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .|||||||+||+.+|.+|++. ++.+|+|+|+.+.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            589999999999999999873 4569999999853

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.56  E-value=6.8e-05  Score=81.15  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=31.8

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..||+||||||+||+.+|.+|++ .|++|+|||++
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~   37 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV   37 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence            36999999999999999999999 89999999974

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.55  E-value=7.5e-05  Score=79.48  Aligned_cols=34  Identities=41%  Similarity=0.682  Sum_probs=31.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~  103 (511)
                      |||||||||++|+++|+.|++.   .|.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            7999999999999999999973   499999999964

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.54  E-value=7e-05  Score=80.20  Aligned_cols=34  Identities=41%  Similarity=0.727  Sum_probs=31.8

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .+||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence            35999999999999999999999 89999999994

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=97.53  E-value=0.0029  Score=65.87  Aligned_cols=59  Identities=29%  Similarity=0.289  Sum_probs=41.7

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      .+.....++.|++|++++.|++|.-+       +|.+..+++  +|.++ .||-|||.-.+|-+-.++|
T Consensus       213 ~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~~-tvvWaaGv~a~~~~~~l~~  271 (405)
T COG1252         213 KYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPAD-TVVWAAGVRASPLLKDLSG  271 (405)
T ss_pred             HHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEecC-EEEEcCCCcCChhhhhcCh
Confidence            35555667899999999999999644       576665443  68897 6999999755543333344

>PLN02268 probable polyamine oxidase

Probab=97.51  E-value=8.9e-05  Score=78.74  Aligned_cols=36  Identities=28%  Similarity=0.497  Sum_probs=33.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      +|||||||.+|+++|++|.+ .|++|+|||+.+....
T Consensus         2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~GG   37 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIGG   37 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCCc
Confidence            79999999999999999998 8999999999887653

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.51  E-value=7.9e-05  Score=79.27  Aligned_cols=35  Identities=34%  Similarity=0.451  Sum_probs=31.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFN  106 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~~~  106 (511)
                      +|||||||++|+++|+.|++ .|  ++|+|+|+.+..+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~G   38 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRLG   38 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCCc
Confidence            59999999999999999999 66  8999999987664

>KOG0405|consensus

Probab=97.51  E-value=0.00071  Score=67.56  Aligned_cols=36  Identities=28%  Similarity=0.547  Sum_probs=33.3

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ...+||+.|||||.+|..+|.+.|+ .|.+|.|+|..
T Consensus        17 ~~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~   52 (478)
T KOG0405|consen   17 DVKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELP   52 (478)
T ss_pred             cccccceEEEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence            3458999999999999999999999 89999999986

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.49  E-value=9.2e-05  Score=77.03  Aligned_cols=33  Identities=45%  Similarity=0.762  Sum_probs=30.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~  103 (511)
                      ||||||||+||+++|.+|++. +|++|+|||+++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999982 499999999985

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK13748 putative mercuric reductase; Provisional

Probab=97.48  E-value=9.4e-05  Score=81.27  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..||+||||||++|+.+|.+|++ .|.+|+|+|++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            36999999999999999999999 899999999973

>PLN02676 polyamine oxidase

Probab=97.47  E-value=0.00022  Score=76.88  Aligned_cols=38  Identities=42%  Similarity=0.506  Sum_probs=34.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~~~  106 (511)
                      ..+||||||||.+|+++|.+|++ .|. +|+|||+.....
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~G   63 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRIG   63 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCCC
Confidence            46899999999999999999999 787 699999987654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.45  E-value=0.00011  Score=78.70  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=33.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCC----CCeEEEEcCCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIP----HWKILLLEAGHYFN  106 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~----G~~VLVLEaG~~~~  106 (511)
                      .||||||||++|+++|++|++ .    |++|+|+|+.+...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~G   42 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRVG   42 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcCc
Confidence            689999999999999999998 5    99999999987664

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.45  E-value=0.00011  Score=79.29  Aligned_cols=34  Identities=18%  Similarity=0.486  Sum_probs=31.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG  102 (511)
                      .+||+||||||++|..+|.++++ . |.+|+|+|++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence            46999999999999999999999 6 8999999984

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>KOG0404|consensus

Probab=97.41  E-value=0.00057  Score=64.25  Aligned_cols=69  Identities=25%  Similarity=0.255  Sum_probs=44.7

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI  350 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi  350 (511)
                      -++..+.+.|.+|++++ |.++.++..     -..+..+.+  .++|+ .||+|+|+  |.+-|.+-|-|..+ ..+.||
T Consensus        75 ~mrkqs~r~Gt~i~tEt-Vskv~~ssk-----pF~l~td~~--~v~~~-avI~atGA--sAkRl~~pg~ge~~-fWqrGi  142 (322)
T KOG0404|consen   75 KMRKQSERFGTEIITET-VSKVDLSSK-----PFKLWTDAR--PVTAD-AVILATGA--SAKRLHLPGEGEGE-FWQRGI  142 (322)
T ss_pred             HHHHHHHhhcceeeeee-hhhccccCC-----CeEEEecCC--ceeee-eEEEeccc--ceeeeecCCCCcch-HHhccc
Confidence            44445667899998875 788877652     222333322  68897 79999999  88777766655433 445555


Q ss_pred             C
Q psy760          351 P  351 (511)
Q Consensus       351 ~  351 (511)
                      .
T Consensus       143 S  143 (322)
T KOG0404|consen  143 S  143 (322)
T ss_pred             c
Confidence            3

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.41  E-value=0.00016  Score=67.83  Aligned_cols=32  Identities=38%  Similarity=0.727  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ||||||||+||+.+|.+|++ .+.+|+|+|+.+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence            79999999999999999998 899999998875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.38  E-value=0.0045  Score=65.30  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=39.2

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCC--CcEEEEEEEECCeEE--EEEeCcEEEEccCCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVT--KKACGVLATIKGIDH--KILARKEVILSAGAF  328 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~--~ra~GV~~~~~g~~~--~v~A~k~VILAAGa~  328 (511)
                      .+..||++..+++|+.|.++.++  ..|+++++..+|+..  .+..+.-|++..|+.
T Consensus       217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~  273 (500)
T PF06100_consen  217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM  273 (500)
T ss_pred             HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence            46789999999999999997542  457788887666544  445555677777764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.34  E-value=0.00017  Score=80.17  Aligned_cols=34  Identities=32%  Similarity=0.519  Sum_probs=32.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .+||+||||+|++|..+|.++++ .|.+|+|+|++
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence            37999999999999999999999 89999999975

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.33  E-value=0.0024  Score=66.50  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=41.0

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      .++.|+++++++.|++|..++  +. ..|.+ .+++  ++.++ .||+|+|.-..+.++..+|+.
T Consensus       193 l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~-~~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~  250 (377)
T PRK04965        193 LTEMGVHLLLKSQLQGLEKTD--SG-IRATL-DSGR--SIEVD-AVIAAAGLRPNTALARRAGLA  250 (377)
T ss_pred             HHhCCCEEEECCeEEEEEccC--CE-EEEEE-cCCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence            456799999999999997654  22 23443 2343  68897 699999986556677777763

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.00019  Score=75.54  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=33.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      -|+|+|||.||+++|+.||+ +|++|+|+|+++..+.
T Consensus         2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~GG   37 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLGG   37 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCccCc
Confidence            38999999999999999999 8999999999987754

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.28  E-value=0.00022  Score=74.52  Aligned_cols=35  Identities=23%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      -||+|||||.+||.+|+.||+ .|.+|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence            489999999999999999999 89999999987653

>PLN02568 polyamine oxidase

Probab=97.26  E-value=0.0003  Score=76.71  Aligned_cols=38  Identities=29%  Similarity=0.527  Sum_probs=33.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC-----CeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH-----WKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-----~~VLVLEaG~~~~  106 (511)
                      +..||||||+|++|+++|.+|++ .|     .+|+|+|+.....
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~G   46 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIG   46 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCcC
Confidence            35799999999999999999998 55     8999999987654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.23  E-value=0.0028  Score=66.48  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  177 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQ-RRCKVTVIELAA  177 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            369999999999999999998 899999999875

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.21  E-value=0.00036  Score=77.24  Aligned_cols=37  Identities=19%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..+.++|+|||||++|+++|..|++ .|++|+|+||.+
T Consensus        78 ~~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~  114 (668)
T PLN02927         78 KKKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL  114 (668)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence            3567999999999999999999999 899999999975

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.14  E-value=0.0004  Score=68.88  Aligned_cols=58  Identities=17%  Similarity=0.110  Sum_probs=46.5

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      |...-++.|..++.+-+|.+..+.+  ++++.|.++ +.....++|+ .+|||+|+|-|--|
T Consensus       264 L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~tr-n~~diP~~a~-~~VLAsGsffskGL  321 (421)
T COG3075         264 LQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTR-NHADIPLRAD-FYVLASGSFFSKGL  321 (421)
T ss_pred             HHHHHHHcCceEecCCceeeeeeeC--CeEEEEEec-ccccCCCChh-Heeeeccccccccc
Confidence            4444567899999999999999887  789988766 4555689997 79999999877543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.13  E-value=0.0018  Score=67.51  Aligned_cols=34  Identities=21%  Similarity=0.390  Sum_probs=29.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~  103 (511)
                      .||||||||+||+.+|.+|.+. +..+|+|+++.+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            4899999999999999999873 667899998864

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.13  E-value=0.0019  Score=67.78  Aligned_cols=33  Identities=24%  Similarity=0.425  Sum_probs=29.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~  103 (511)
                      .+|||||||+||+.+|..|++ .+.  +|+|+|+.+
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~-~~~~~~I~li~~e~   38 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQ-QGFTGELHLFSDER   38 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHh-hCCCCCEEEeCCCC
Confidence            579999999999999999998 454  899999874

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.13  E-value=0.0007  Score=78.08  Aligned_cols=37  Identities=19%  Similarity=0.301  Sum_probs=33.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ..+||+|||||+||+++|+.|++ .|++|+|+|+.+..
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~l  572 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEKP  572 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccccc
Confidence            45899999999999999999999 89999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.12  E-value=0.00039  Score=74.46  Aligned_cols=37  Identities=19%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-----CCCeEEEEcCCCCCCc
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-----PHWKILLLEAGHYFNY  107 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-----~G~~VLVLEaG~~~~~  107 (511)
                      +|||||||++|+++|++|++.     .|.+|+|||+.+....
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG   44 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG   44 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence            599999999999999999983     1479999999877643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.05  E-value=0.0051  Score=65.85  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -+++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~  203 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLD  203 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCC
Confidence            479999999999999999999 799999999874

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.04  E-value=0.00054  Score=71.98  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .||+|||||.+||.+|..||+ .|.+|+|+|+.+.
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~   34 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE   34 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            389999999999999999999 8999999998764

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.02  E-value=0.01  Score=61.39  Aligned_cols=35  Identities=17%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cEEEECCCcHHHHHHHHHhc--CCCCeEEEEcCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSE--IPHWKILLLEAGHYF  105 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe--~~G~~VLVLEaG~~~  105 (511)
                      .|||||||.||+.+|.+|.+  .++.+|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            38999999999999999964  257899999988754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.02  E-value=0.0072  Score=64.73  Aligned_cols=32  Identities=31%  Similarity=0.484  Sum_probs=29.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~  203 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAP  203 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            69999999999999999998 799999999874

>PRK12831 putative oxidoreductase; Provisional

Probab=97.00  E-value=0.00078  Score=72.27  Aligned_cols=38  Identities=26%  Similarity=0.406  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....||+|||||+||+++|.+|++ .|++|+|+|+.+..
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~~  175 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHEP  175 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            456899999999999999999999 89999999987643

>TIGR02053 MerA mercuric reductase

Probab=96.99  E-value=0.0057  Score=65.57  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~  199 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFAR-LGSEVTILQRSD  199 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCC
Confidence            469999999999999999998 799999999874

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.97  E-value=0.0013  Score=70.29  Aligned_cols=38  Identities=26%  Similarity=0.403  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+||+|||||++|+.+|..|++ .|++|+|+|+.+..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~~  168 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHKP  168 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            356899999999999999999999 89999999997643

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.96  E-value=0.0089  Score=64.07  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~  205 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYAS-LGAEVTIVEALP  205 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            68999999999999999998 799999999875

>KOG2614|consensus

Probab=96.94  E-value=0.00083  Score=68.82  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +-+|||||||++|+++|..|++ .|++|+|+|+..
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeecc
Confidence            4579999999999999999999 899999999954

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.94  E-value=0.0083  Score=64.42  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~  205 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLD  205 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            68999999999999999998 799999999874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=96.90  E-value=0.0079  Score=64.03  Aligned_cols=57  Identities=21%  Similarity=0.283  Sum_probs=40.5

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..++.|++++++++|++|..+   +++.++..  +++  ++.++ .||+|+|..-+..+|..+|+
T Consensus       200 ~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~--~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl  256 (444)
T PRK09564        200 ELRENGVELHLNEFVKSLIGE---DKVEGVVT--DKG--EYEAD-VVIVATGVKPNTEFLEDTGL  256 (444)
T ss_pred             HHHHCCCEEEcCCEEEEEecC---CcEEEEEe--CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence            345678999999999999532   34444443  233  58897 69999998655667877776

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=96.90  E-value=0.011  Score=63.59  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~  213 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLAD-FGVEVTVVEAAD  213 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-cCCeEEEEEecC
Confidence            369999999999999999999 899999999875

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.89  E-value=0.00083  Score=70.82  Aligned_cols=35  Identities=29%  Similarity=0.455  Sum_probs=31.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFN  106 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~~~  106 (511)
                      -++|||||.+||++|++|++ .+  ..|+|+|+++...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k-~~p~~~i~lfE~~~r~G   38 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQK-AGPDVEVTLFEADDRVG   38 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHH-hCCCCcEEEEecCCCCC
Confidence            38999999999999999999 56  9999999997664

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.89  E-value=0.012  Score=64.18  Aligned_cols=57  Identities=18%  Similarity=0.192  Sum_probs=44.0

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS  337 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~S  337 (511)
                      ..|+++++++.|++|.-++  +++++|++..  ++++.++.++ .|++|.|..-.+.++..+
T Consensus       399 ~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~  457 (517)
T PRK15317        399 LPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT  457 (517)
T ss_pred             CCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence            4699999999999997553  6788888763  4555579998 799999986656666543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.87  E-value=0.0017  Score=69.90  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....+|+|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~  178 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRI  178 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            356899999999999999999999 89999999998654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.002  Score=64.37  Aligned_cols=30  Identities=27%  Similarity=0.417  Sum_probs=26.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEE
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKIL   97 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VL   97 (511)
                      ...|||+|||||+||.++|.+.|+ .|.|.-
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTG  238 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAAR-KGIRTG  238 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHh-hcchhh
Confidence            356999999999999999999999 788753

>PRK06370 mercuric reductase; Validated

Probab=96.85  E-value=0.01  Score=63.63  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~  204 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGP  204 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            368999999999999999999 899999999874

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.84  E-value=0.0082  Score=68.95  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..++.|++|++++.|++|.-+++ +....|.+. +++  .+.++ .||+|+|.--+..|+..+|+
T Consensus       196 ~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl  255 (847)
T PRK14989        196 KIESMGVRVHTSKNTLEIVQEGV-EARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLATQCGL  255 (847)
T ss_pred             HHHHCCCEEEcCCeEEEEEecCC-CceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence            34567999999999999975432 344455554 344  68898 69999998555566666775

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.83  E-value=0.013  Score=62.55  Aligned_cols=31  Identities=13%  Similarity=0.153  Sum_probs=29.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .|+|||||..|+-+|..|++ .|.+|.|+++.
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~  304 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALR-LGAEVHCLYRR  304 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeec
Confidence            69999999999999999999 79999999876

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.82  E-value=0.015  Score=63.27  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=41.8

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLML  336 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~  336 (511)
                      +.|++|++++.|+++.-++  +++++|++..  .++..++.++ .||+|.|..-+..+|..
T Consensus       400 ~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~  457 (515)
T TIGR03140       400 LPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD  457 (515)
T ss_pred             CCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence            3699999999999997543  5777888764  2444578998 69999998555566643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=96.82  E-value=0.011  Score=62.70  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=30.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|.+|+-+|..|++ .|.+|.++++++
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~  170 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSE  170 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECCc
Confidence            369999999999999999998 799999999874

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02529 lysine-specific histone demethylase 1

Probab=96.81  E-value=0.0013  Score=73.90  Aligned_cols=39  Identities=33%  Similarity=0.370  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ....||+|||+|++|+.+|..|++ .|++|+|+|+.+...
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~G  196 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNRPG  196 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCccCc
Confidence            356899999999999999999999 899999999977653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.81  E-value=0.0093  Score=63.47  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|.+|+-+|..|++ .|.+|+|+|+++
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~  190 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAAS  190 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            69999999999999999998 899999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.80  E-value=0.0088  Score=68.40  Aligned_cols=57  Identities=21%  Similarity=0.149  Sum_probs=41.6

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++.|++|++++.|++|.-+   +++.+|++.+ |+  ++.++ .||+|+|.--+..++..+|+
T Consensus       192 l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~d-G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl  248 (785)
T TIGR02374       192 LEQKGLTFLLEKDTVEIVGA---TKADRIRFKD-GS--SLEAD-LIVMAAGIRPNDELAVSAGI  248 (785)
T ss_pred             HHHcCCEEEeCCceEEEEcC---CceEEEEECC-CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence            45679999999999998643   4566776653 43  68898 69999998555556666665

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.74  E-value=0.0017  Score=73.41  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ....+|||||||++|+++|..|++ .|++|+|+|+....+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~G  274 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARPG  274 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccCC
Confidence            346899999999999999999999 899999999986653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.73  E-value=0.0013  Score=76.09  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+|+|||||+||+++|..|++ .|++|+|+|+.+...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCCCC
Confidence            45789999999999999999999 899999999986543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.71  E-value=0.0024  Score=73.51  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....+|+|||||+||+++|+.|++ .|++|+|+|+.+..
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~~  574 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREENA  574 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEeccccc
Confidence            345799999999999999999999 89999999998654

>PRK10262 thioredoxin reductase; Provisional

Probab=96.66  E-value=0.028  Score=57.04  Aligned_cols=56  Identities=9%  Similarity=0.088  Sum_probs=40.0

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC---CeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK---GIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~---g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      .++.|+++++++.|++|.-++  +++.+|++...   +...++.++ .||++.|.--...++
T Consensus       195 l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~  253 (321)
T PRK10262        195 VENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF  253 (321)
T ss_pred             ccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence            346789999999999996443  45777877642   334578898 699999974444443

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.66  E-value=0.0018  Score=67.46  Aligned_cols=37  Identities=24%  Similarity=0.438  Sum_probs=33.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .-+++|||||.||+.+|..||+ .|.+|.|+|+.+...
T Consensus       124 ~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsiG  160 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSIG  160 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCccc
Confidence            3579999999999999999999 899999999987654

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.64  E-value=0.016  Score=62.26  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~  207 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLD  207 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence            358999999999999999998 899999999874

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.64  E-value=0.0031  Score=71.86  Aligned_cols=38  Identities=24%  Similarity=0.437  Sum_probs=33.8

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....||+|||||+||+++|..|++ .|++|+|+|+.+..
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~~~  466 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALHEI  466 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            346899999999999999999999 89999999996543

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.64  E-value=0.0022  Score=68.68  Aligned_cols=38  Identities=29%  Similarity=0.484  Sum_probs=34.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....+|+|||||++|+.+|..|++ .|++|+|+|+.+..
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence            345899999999999999999999 79999999998654

>KOG4716|consensus

Probab=96.62  E-value=0.0016  Score=64.84  Aligned_cols=35  Identities=29%  Similarity=0.527  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..+||.||||||.+|+++|.++|. -|.+|.+||.=
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV   51 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFV   51 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeec
Confidence            457999999999999999999999 89999999964

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.60  E-value=0.0029  Score=68.00  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=33.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhc-CCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe-~~G~~VLVLEaG~~~~  106 (511)
                      ....|+|||||+||+.+|..|++ ..|++|+|+|+.+...
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            45789999999999999999985 2699999999988654

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.60  E-value=0.0023  Score=67.53  Aligned_cols=40  Identities=33%  Similarity=0.533  Sum_probs=31.2

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      |+++|||||+|.|..-+.+|..||+ .|.+||.+|+++..+
T Consensus         1 m~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYG   40 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred             CCccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence            5679999999999999999999999 899999999998775

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=96.58  E-value=0.014  Score=62.41  Aligned_cols=33  Identities=30%  Similarity=0.447  Sum_probs=30.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~  208 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAA-LGVKVTLINTRD  208 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            359999999999999999999 899999999874

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.56  E-value=0.0019  Score=73.66  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=30.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      +|+|||||++|+++|+.|++. +|++|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            699999999999999999983 3899999999875

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=96.52  E-value=0.015  Score=62.21  Aligned_cols=32  Identities=25%  Similarity=0.184  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~  199 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHE  199 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Confidence            69999999999999999998 899999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG0685|consensus

Probab=96.48  E-value=0.0031  Score=65.70  Aligned_cols=40  Identities=33%  Similarity=0.424  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+.-|||||||+||+.||.+|-++....|+|+|+.++.+
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG   58 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG   58 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence            4456899999999999999999976677999999988764

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.47  E-value=0.0047  Score=66.35  Aligned_cols=37  Identities=19%  Similarity=0.384  Sum_probs=33.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+|+|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~~  176 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPEI  176 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            46899999999999999999999 79999999998654

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.47  E-value=0.045  Score=54.48  Aligned_cols=55  Identities=25%  Similarity=0.215  Sum_probs=40.0

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS  337 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~S  337 (511)
                      .|+++++++.|+++..+   +++.++++..  .++..++.++ .||+|+|.-..+.++..+
T Consensus       190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~  246 (300)
T TIGR01292       190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL  246 (300)
T ss_pred             CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence            48999999999999743   3566777653  3455678997 799999975555566554

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12831 putative oxidoreductase; Provisional

Probab=96.47  E-value=0.032  Score=59.95  Aligned_cols=32  Identities=13%  Similarity=0.090  Sum_probs=29.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      =.|+|||||..|+-+|..|++ .|.+|.|+++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~  313 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALR-LGAEVHIVYRR  313 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHH-cCCEEEEEeec
Confidence            379999999999999999998 79999999875

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=96.45  E-value=0.0069  Score=69.23  Aligned_cols=33  Identities=15%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             EEEECCCcHHHHHHHHHhcC--CCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~--~G~~VLVLEaG~~  104 (511)
                      +||||+|+||+.+|.+|.+.  .+.+|+|+|+.+.
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~   35 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH   35 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence            68999999999999988662  4679999998864

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.45  E-value=0.0074  Score=69.30  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~~  104 (511)
                      .+||||+|+||+.+|.+|.+.   .+.+|+|+++.+.
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~   41 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR   41 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence            799999999999999999752   4689999998864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=96.45  E-value=0.02  Score=61.58  Aligned_cols=32  Identities=22%  Similarity=0.271  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~  216 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRR-LGAEVTILEALP  216 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence            68999999999999999998 799999999874

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.43  E-value=0.0037  Score=71.36  Aligned_cols=35  Identities=17%  Similarity=0.455  Sum_probs=32.3

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ....|+|||||+||+++|+.|++ .|++|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEcccc
Confidence            45789999999999999999999 899999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=96.40  E-value=0.027  Score=60.01  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus       150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~  181 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSD  181 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEeccc
Confidence            69999999999999999998 899999999874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.38  E-value=0.025  Score=60.26  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~  191 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFAN-FGSKVTILEAAS  191 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            68999999999999999998 899999999874

>PRK14727 putative mercuric reductase; Provisional

Probab=96.37  E-value=0.024  Score=61.06  Aligned_cols=31  Identities=10%  Similarity=0.251  Sum_probs=28.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+++.
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~  220 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYAR-LGSRVTILARS  220 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEEcC
Confidence            59999999999999999998 79999999864

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.35  E-value=0.0057  Score=66.01  Aligned_cols=37  Identities=22%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+|+|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~~  178 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDRC  178 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            34799999999999999999999 89999999998754

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.34  E-value=0.031  Score=60.03  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~  210 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRD  210 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            58999999999999999998 899999999874

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.34  E-value=0.033  Score=59.30  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-.|.-+++ -|.+|+|||+++.
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~  207 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDR  207 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence            48999999999999999999 8999999999864

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.29  E-value=0.004  Score=69.64  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=33.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+|+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~~  228 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQA  228 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            45799999999999999999999 89999999998654

>PLN02507 glutathione reductase

Probab=96.28  E-value=0.034  Score=60.31  Aligned_cols=32  Identities=13%  Similarity=0.042  Sum_probs=29.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~  236 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKE  236 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecC
Confidence            69999999999999999998 799999999874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.25  E-value=0.0051  Score=63.50  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+|+|||+|.+|+.+|..|++ .|++|+|+|+.+...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~g   54 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEPG   54 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCCC
Confidence            4689999999999999999999 799999999987653

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=96.23  E-value=0.027  Score=60.15  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~  199 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGE  199 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCC
Confidence            58999999999999999998 799999999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK14694 putative mercuric reductase; Provisional

Probab=96.22  E-value=0.034  Score=59.76  Aligned_cols=31  Identities=13%  Similarity=0.268  Sum_probs=28.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|++++
T Consensus       180 ~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~  210 (468)
T PRK14694        180 RLLVIGASVVALELAQAFAR-LGSRVTVLARS  210 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEECC
Confidence            58999999999999999998 79999999864

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.20  E-value=0.0076  Score=67.35  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=34.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+|+|||||++|+++|..|++ .|++|+|+|+.+..
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~~  345 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPEI  345 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCCC
Confidence            46889999999999999999999 89999999998764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=96.18  E-value=0.005  Score=65.62  Aligned_cols=38  Identities=21%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..-|+|||||+||+.+|.+|+...|++|.|+|+.+.+.
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg   76 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY   76 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence            35699999999999999987643799999999998765

>PRK07846 mycothione reductase; Reviewed

Probab=96.15  E-value=0.04  Score=58.93  Aligned_cols=33  Identities=18%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~  199 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSG  199 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            469999999999999999998 899999999874

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.15  E-value=0.031  Score=60.31  Aligned_cols=31  Identities=16%  Similarity=0.147  Sum_probs=28.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||||..|+-+|..|++ .|.+|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHH-hCCcEEEEEec
Confidence            58999999999999999998 79999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06116 glutathione reductase; Validated

Probab=96.15  E-value=0.045  Score=58.48  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=29.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+++++++
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  200 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGD  200 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            368999999999999999998 799999999874

>PLN03000 amine oxidase

Probab=96.14  E-value=0.0055  Score=69.46  Aligned_cols=38  Identities=29%  Similarity=0.376  Sum_probs=34.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...||+|||||.+|+.+|..|++ .|++|+|+|+.+...
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~riG  220 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRPG  220 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence            45899999999999999999999 899999999987654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=96.12  E-value=0.039  Score=59.32  Aligned_cols=32  Identities=13%  Similarity=0.175  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|||+++
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~  207 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFD  207 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCC
Confidence            69999999999999999999 899999999875

>KOG1276|consensus

Probab=96.12  E-value=0.0066  Score=62.49  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCc
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNY  107 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~  107 (511)
                      ....+++|||||++|+++|+.|++. +...|+|.|++++...
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG   50 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG   50 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence            3467999999999999999999985 5556788999987753

>PTZ00058 glutathione reductase; Provisional

Probab=96.03  E-value=0.044  Score=60.18  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~  270 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNR-LGAESYIFARGN  270 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHH-cCCcEEEEEecc
Confidence            368999999999999999998 899999999874

>PLN02976 amine oxidase

Probab=95.98  E-value=0.0071  Score=71.25  Aligned_cols=38  Identities=34%  Similarity=0.524  Sum_probs=34.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+||+|||+|++|+.+|++|++ .|++|+|||+.+...
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~vG  729 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSRIG  729 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccCCC
Confidence            45899999999999999999999 899999999976543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=95.96  E-value=0.072  Score=55.47  Aligned_cols=34  Identities=35%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -+++|||+|.+|+-+|..|++ .|++|+++|+.+.
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~  170 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADR  170 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcccc
Confidence            689999999999999999999 8999999998854

>KOG3855|consensus

Probab=95.96  E-value=0.0068  Score=62.13  Aligned_cols=38  Identities=42%  Similarity=0.665  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~~  104 (511)
                      ...|||||||||+.|.+.|..|..+   ..+||+++|.+..
T Consensus        34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            4479999999999999999999875   3579999999954

>PRK13748 putative mercuric reductase; Provisional

Probab=95.92  E-value=0.047  Score=60.05  Aligned_cols=31  Identities=13%  Similarity=0.232  Sum_probs=28.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+.
T Consensus       272 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~  302 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFAR-LGSKVTILARS  302 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEecC
Confidence            69999999999999999998 89999999974

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.77  E-value=0.049  Score=57.30  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=29.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC--CCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~--~G~~VLVLEaG~~~  105 (511)
                      ++|+|||||++|..+|.+|.+.  +..+|.|+|+-+..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            7899999999999999999875  22349999987654

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=95.71  E-value=0.067  Score=57.75  Aligned_cols=49  Identities=10%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .++.|+++++++.|++|..+++  ....|++. +++  ++.++ .||+|+|-.-.
T Consensus       241 L~~~GI~i~~~~~v~~i~~~~~--~~~~v~~~-~g~--~i~~D-~vl~a~G~~Pn  289 (486)
T TIGR01423       241 LRANGINIMTNENPAKVTLNAD--GSKHVTFE-SGK--TLDVD-VVMMAIGRVPR  289 (486)
T ss_pred             HHHcCCEEEcCCEEEEEEEcCC--ceEEEEEc-CCC--EEEcC-EEEEeeCCCcC
Confidence            4567999999999999976542  22334443 333  68898 69999997433

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.71  E-value=0.1  Score=55.89  Aligned_cols=32  Identities=9%  Similarity=0.159  Sum_probs=28.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG  102 (511)
                      -.|+|||+|..|+-+|..|++ .|. +|.|+++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~-~G~~~Vtlv~~~  306 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKR-LGAESVTIVYRR  306 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeec
Confidence            479999999999999999998 677 89999875

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.71  E-value=0.085  Score=54.39  Aligned_cols=31  Identities=19%  Similarity=0.145  Sum_probs=27.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+ |.|+|+.
T Consensus       174 ~vvViG~G~~g~e~A~~l~~-~g~~~Vtvi~~~  205 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVL-LGAEKVYLAYRR  205 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCCeEEEEeec
Confidence            59999999999999999988 6886 9999865

>TIGR03452 mycothione_red mycothione reductase

Probab=95.57  E-value=0.1  Score=55.88  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~  202 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRST  202 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccC
Confidence            369999999999999999998 899999999874

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.55  E-value=0.012  Score=64.68  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...-+|+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~~  172 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPKL  172 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            345789999999999999999999 79999999987654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=95.50  E-value=0.13  Score=57.39  Aligned_cols=32  Identities=19%  Similarity=0.132  Sum_probs=29.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-.|..|++ .|.+|+|+|+++
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~  345 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSP  345 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHh-CCCeEEEEeccC
Confidence            68999999999999999998 799999999875

>PRK13984 putative oxidoreductase; Provisional

Probab=95.42  E-value=0.016  Score=64.28  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....+++|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            356789999999999999999999 89999999998754

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.42  E-value=0.15  Score=54.56  Aligned_cols=32  Identities=25%  Similarity=0.436  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~  202 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGD  202 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Confidence            69999999999999999998 799999999874

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.37  E-value=0.19  Score=55.28  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+++++++
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTR-YASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCC
Confidence            369999999999999999998 799999999874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=95.33  E-value=0.15  Score=54.78  Aligned_cols=60  Identities=20%  Similarity=0.176  Sum_probs=42.2

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----------CCeEEEEEeCcEEEEccCCCCc-HHHHHhcCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----------KGIDHKILARKEVILSAGAFNS-PKLLMLSGI  339 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----------~g~~~~v~A~k~VILAAGa~~S-P~LL~~SGI  339 (511)
                      ++.|+++++++.+++|.-++  +++++|++.+           .++..++.++ .||+|.|..-. ..++...|+
T Consensus       340 ~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl  411 (471)
T PRK12810        340 HEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV  411 (471)
T ss_pred             HHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence            45699999999999996443  7888887652           2345689998 69999995332 335544443

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.27  E-value=0.14  Score=54.30  Aligned_cols=52  Identities=21%  Similarity=0.231  Sum_probs=35.3

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++.|+++++++.|+++.-+       .|++. +|+  ++.++ .||+++|.-.+ .++..+|+
T Consensus       238 L~~~gV~v~~~~~v~~v~~~-------~v~~~-~g~--~i~~d-~vi~~~G~~~~-~~~~~~~l  289 (424)
T PTZ00318        238 LRRLGVDIRTKTAVKEVLDK-------EVVLK-DGE--VIPTG-LVVWSTGVGPG-PLTKQLKV  289 (424)
T ss_pred             HHHCCCEEEeCCeEEEEeCC-------EEEEC-CCC--EEEcc-EEEEccCCCCc-chhhhcCC
Confidence            45679999999999998522       35544 344  68887 68888885333 45555553

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.23  E-value=0.17  Score=54.48  Aligned_cols=33  Identities=6%  Similarity=0.031  Sum_probs=28.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..+.+ .|. +|.|+++.+
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~-~Ga~~Vtvv~r~~  316 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIR-LGAASVTCAYRRD  316 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHH-cCCCeEEEEEecC
Confidence            469999999999999999888 675 799998763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00052 thioredoxin reductase; Provisional

Probab=95.20  E-value=0.13  Score=55.77  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=28.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence            69999999999999999999 79999999863

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=95.17  E-value=0.23  Score=58.42  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=45.1

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ++.|+++++++.|+++.-+   +++.+|++.. +++..++.++ .|+++.|..-+..|+...|..
T Consensus       362 ~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~  422 (985)
T TIGR01372       362 RELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK  422 (985)
T ss_pred             HHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence            4678999999999998633   4677888763 3344578998 699999987666787776643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.16  E-value=0.026  Score=59.78  Aligned_cols=37  Identities=14%  Similarity=0.343  Sum_probs=32.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      +..+|||||||.||+.+|.+|.. .+.+|+|||+.+..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence            45789999999999999999976 68899999987654

>PLN02546 glutathione reductase

Probab=95.15  E-value=0.18  Score=55.45  Aligned_cols=32  Identities=16%  Similarity=0.132  Sum_probs=29.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus       254 ~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~  285 (558)
T PLN02546        254 KIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQK  285 (558)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEEEecc
Confidence            69999999999999999998 799999999874

>KOG1800|consensus

Probab=95.09  E-value=0.027  Score=57.24  Aligned_cols=39  Identities=26%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCc
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNY  107 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~  107 (511)
                      ..-|+|||||+||+.+|.+|-++ ++.+|.|+|+-+.+..
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG   59 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG   59 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence            34799999999999999999884 7899999999987643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.93  E-value=0.28  Score=57.19  Aligned_cols=32  Identities=9%  Similarity=0.172  Sum_probs=28.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      =.|+|||||..|+-+|..+.+ .|.+|+++.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R-~Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKR-LGGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-cCCEEEEEEec
Confidence            369999999999999999998 78899998765

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=94.87  E-value=0.2  Score=57.25  Aligned_cols=32  Identities=13%  Similarity=0.130  Sum_probs=28.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG  102 (511)
                      -.|||||||..|+-+|..|.+ .|.+ |+|+++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtlv~r~  603 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKR-LGAERVTIVYRR  603 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHH-cCCCeEEEeeec
Confidence            369999999999999999988 6876 9999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=94.78  E-value=0.042  Score=58.56  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .-.|.|||||+||+.+|..|++ .|+.|+|.|+-+...
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~G  159 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALDG  159 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCCc
Confidence            3789999999999999999999 899999999987654

>KOG1336|consensus

Probab=94.37  E-value=0.25  Score=51.93  Aligned_cols=56  Identities=11%  Similarity=-0.002  Sum_probs=43.1

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML  336 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~  336 (511)
                      .++.|++++.++.+.++..+.+ |+++-|.+.++.   ++.|+ -||+..|+--...++..
T Consensus       265 ~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~---~l~ad-lvv~GiG~~p~t~~~~~  320 (478)
T KOG1336|consen  265 YENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGK---TLEAD-LVVVGIGIKPNTSFLEK  320 (478)
T ss_pred             HHhcCeEEEEecceeecccCCC-CcEEEEEeccCC---EeccC-eEEEeeccccccccccc
Confidence            3578999999999999987765 788888876543   68898 69999998433345544

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.28  E-value=0.21  Score=51.36  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=28.6

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .....|+|||||-.+.-++..|.++ +..+|.++=|++.
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~  226 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG  226 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence            4567899999999999999999984 3358988888753

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.26  E-value=0.34  Score=50.01  Aligned_cols=39  Identities=31%  Similarity=0.313  Sum_probs=34.1

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +.+.+|+|.||-|++-+..|+.|.+..+.+++.|||-+.
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~   40 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD   40 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence            345699999999999999999999966689999999764

>KOG4405|consensus

Probab=94.12  E-value=0.055  Score=55.46  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=37.2

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+.+||+||||.|..-.++|...++ .|.+||=||+.+..+
T Consensus         4 ~lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yYG   44 (547)
T KOG4405|consen    4 ILPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYYG   44 (547)
T ss_pred             CCchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCccccC
Confidence            45778999999999999999999999 899999999987654

>KOG2755|consensus

Probab=93.94  E-value=0.038  Score=53.55  Aligned_cols=35  Identities=37%  Similarity=0.758  Sum_probs=30.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF  105 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~  105 (511)
                      .+||||||+||.++|..||.. +...||+|-+.+..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            379999999999999999964 88899999987653

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=93.72  E-value=0.048  Score=54.49  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=30.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|.|||+|.||.-+|+++|+ .|.+|.+.|--+.
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~   37 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPV   37 (439)
T ss_pred             ceEEEcccccccHHHHHHHH-cCCcEEEEEcccc
Confidence            48899999999999999999 8999999996543

>KOG3851|consensus

Probab=93.39  E-value=0.07  Score=53.13  Aligned_cols=39  Identities=18%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      ..+++.++|||||.+|+.+|.++++. +.-+|.|||-...
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            45789999999999999999999986 4458999996543

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.36  E-value=0.088  Score=47.02  Aligned_cols=31  Identities=29%  Similarity=0.488  Sum_probs=29.4

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ++|+|+|..|+..|++|++ .|.+|.++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence            6899999999999999999 899999999986

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG1439|consensus

Probab=93.33  E-value=0.055  Score=55.46  Aligned_cols=40  Identities=30%  Similarity=0.587  Sum_probs=36.2

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      |.++|||||+|.|..=|..+..|+. .|.+||.+||.+..+
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yYG   40 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYYG   40 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCCC
Confidence            3556999999999999999999999 799999999998764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.12  E-value=0.64  Score=52.20  Aligned_cols=33  Identities=12%  Similarity=0.158  Sum_probs=27.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      -.|+|||+|..|+-+|..|.+ .|. +|.|+++..
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~-~Ga~~Vtlv~r~~  357 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALR-LGAESVTILYRRT  357 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence            469999999999999999888 565 699998763

>KOG0399|consensus

Probab=92.74  E-value=0.14  Score=58.59  Aligned_cols=38  Identities=21%  Similarity=0.410  Sum_probs=34.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .-.-|.|||+|++|+.+|..|-+ .|+.|+|.||.+...
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRVG 1821 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCcC
Confidence            45789999999999999999999 899999999988765

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.64  E-value=0.96  Score=50.67  Aligned_cols=49  Identities=14%  Similarity=0.091  Sum_probs=35.9

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----------------CCeEEEEEeCcEEEEccCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----------------KGIDHKILARKEVILSAGA  327 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----------------~g~~~~v~A~k~VILAAGa  327 (511)
                      +..|+++++++.+++|..+++ +++++|++..                 .+.+.++.++ .||+|.|-
T Consensus       500 ~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD-~Vi~AiG~  565 (639)
T PRK12809        500 REEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD-VLIMAFGF  565 (639)
T ss_pred             HHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECcCC
Confidence            345889999999999876543 6788876531                 1345688998 69999995

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.24  E-value=0.19  Score=51.04  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=34.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .|||||+|.|..=|+.+.+|+- .|.+|+.||+.+..+
T Consensus         6 ~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~YG   42 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYYG   42 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCccC
Confidence            6999999999999999999999 799999999988764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=91.98  E-value=0.18  Score=45.62  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |.|+|||..|.++|..|++ .|++|.|..+.+
T Consensus         2 I~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLAD-NGHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence            7899999999999999999 799999999864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.26  E-value=0.22  Score=48.08  Aligned_cols=33  Identities=36%  Similarity=0.565  Sum_probs=30.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||+|-.|..+|..|++ .|+.|+++|+.+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHH
Confidence            58999999999999999999 8999999999764

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=91.21  E-value=0.23  Score=46.15  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=27.6

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.|||+|..|...|..++. .|++|.++|..+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            7899999999999999999 7999999998754

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2403|consensus

Probab=90.74  E-value=0.59  Score=50.00  Aligned_cols=37  Identities=30%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..+..||.+|||+|.||+-+|..|+| .|.+|.++-+-
T Consensus        51 ~~~~~~da~vvgaggAGlr~~~~lae-~g~~~a~itkl   87 (642)
T KOG2403|consen   51 QVDHTYDAVVVGAGGAGLRAARGLAE-LGEKTAVITKL   87 (642)
T ss_pred             eeeeeceeEEEeccchhhhhhhhhhh-cCceEEEEecc
Confidence            34556999999999999999999999 89999988764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.63  E-value=2.9  Score=42.49  Aligned_cols=58  Identities=17%  Similarity=0.183  Sum_probs=45.3

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS  337 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~S  337 (511)
                      .-+|++|++|+.-++|.=|+  .+|+|.++.+  .++...+.-. .|.+--|-+-+..+|.-+
T Consensus       401 sl~Nv~ii~na~Ttei~Gdg--~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~  460 (520)
T COG3634         401 SLPNVTIITNAQTTEVKGDG--DKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA  460 (520)
T ss_pred             cCCCcEEEecceeeEEecCC--ceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence            34799999999999997665  6899999984  4555666665 689999988777777654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.13  E-value=0.3  Score=49.41  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|+.|+..|.+|++ .|.+|.++.|+.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLAR-AGLPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence            59999999999999999999 899999999974

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=90.09  E-value=4.1  Score=47.73  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~  103 (511)
                      .|+|||||..|+-+|..+.+..| .+|.|+.+..
T Consensus       670 rVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~  703 (1019)
T PRK09853        670 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  703 (1019)
T ss_pred             EEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence            69999999999999988877345 4899998763

>PRK13984 putative oxidoreductase; Provisional

Probab=90.02  E-value=3.8  Score=45.53  Aligned_cols=54  Identities=15%  Similarity=0.038  Sum_probs=35.5

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEE----------------CCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATI----------------KGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~----------------~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      .|+++++++.++++..++  +++++|++..                .+...++.++ .||+|.|--....+|.
T Consensus       475 ~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD-~Vi~aiG~~p~~~~l~  544 (604)
T PRK13984        475 EGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEAD-MVVEAIGQAPDYSYLP  544 (604)
T ss_pred             cCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECC-EEEEeeCCCCChhhhh
Confidence            578888888777775443  5677776531                1234579998 6999999744334443

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=89.82  E-value=0.36  Score=45.08  Aligned_cols=32  Identities=19%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.|||.|..|+++|..||+ .|++|+.+|..+.
T Consensus         3 I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~   34 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEE   34 (185)
T ss_dssp             EEEE--STTHHHHHHHHHH-TTSEEEEE-S-HH
T ss_pred             EEEECCCcchHHHHHHHHh-CCCEEEEEeCChH
Confidence            7899999999999999999 8999999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.49  E-value=0.45  Score=44.37  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .-.|+|||+|.++.-+|..|++ .|.+|.++=|.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~-~g~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAK-AGKSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTT-TCSEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHh-hCCEEEEEecCC
Confidence            3579999999999999999999 789999998875

...

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=89.24  E-value=4.9  Score=47.18  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=27.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      -.|+|||||..|+-+|..+.+.+|. +|.|+++..
T Consensus       667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~  701 (1012)
T TIGR03315       667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT  701 (1012)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence            3689999999999999888763465 799998763

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=88.87  E-value=0.36  Score=49.99  Aligned_cols=45  Identities=18%  Similarity=0.121  Sum_probs=30.4

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa  327 (511)
                      +...|.+|+++++|++|..++  ++++ |.+. +++  ++.|+ .||+|+..
T Consensus       219 ~~~~g~~i~l~~~V~~I~~~~--~~v~-v~~~-~g~--~~~ad-~VI~a~p~  263 (450)
T PF01593_consen  219 AEELGGEIRLNTPVTRIERED--GGVT-VTTE-DGE--TIEAD-AVISAVPP  263 (450)
T ss_dssp             HHHHGGGEESSEEEEEEEEES--SEEE-EEET-TSS--EEEES-EEEE-S-H
T ss_pred             HhhcCceeecCCcceeccccc--cccc-cccc-cce--EEecc-eeeecCch
Confidence            444567999999999999987  3333 3222 333  78897 69888874

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=88.87  E-value=0.46  Score=48.14  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.|.|||+|..|+..|..|++ .|++|.++.|+.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence            359999999999999999999 899999999874

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=88.51  E-value=0.45  Score=48.10  Aligned_cols=33  Identities=24%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.|||+|..|...|..|++ .|++|+++++.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~~   36 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADPA   36 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCHH
Confidence            58999999999999999999 7999999998753

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=88.19  E-value=7.6  Score=39.25  Aligned_cols=57  Identities=25%  Similarity=0.355  Sum_probs=41.8

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      +.++.+++++.+.+|.-++    +.+|++... ++...+..+ .|.++.|..-...++...++
T Consensus       191 ~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~  248 (305)
T COG0492         191 NVKIEVLTNTVVKEILGDD----VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV  248 (305)
T ss_pred             cCCeEEEeCCceeEEecCc----cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence            3489999999999996542    668888754 566678887 69999998544456665443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.14  E-value=0.55  Score=50.61  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|.+|+.+|..|++ .|.+|.++|+.+
T Consensus        18 ~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~   49 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLE-LGARVTVVDDGD   49 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            69999999999999999998 899999999765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.99  E-value=0.52  Score=47.32  Aligned_cols=30  Identities=33%  Similarity=0.450  Sum_probs=28.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      .|.|||+|..|+..|..|++ .|++|.++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~-~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLE-AGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence            38899999999999999999 7999999998

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=87.92  E-value=0.58  Score=46.90  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=28.3

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +.|||+|..|...|..|++ .|++|.++.+.
T Consensus         3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            8999999999999999999 79999999984

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=87.62  E-value=5.8  Score=43.69  Aligned_cols=55  Identities=18%  Similarity=0.082  Sum_probs=35.9

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE---------------CCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI---------------KGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---------------~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      +.|++|++++.+++|.-+++ +++ |+++..               .++..++.++ .||+|.|-.-.+.++.
T Consensus       317 ~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~  386 (564)
T PRK12771        317 REGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLE  386 (564)
T ss_pred             HcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhh
Confidence            45888888888888865442 333 654321               2445689998 7999999744445554

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.26  E-value=0.68  Score=49.53  Aligned_cols=32  Identities=19%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.|||.|.+|+++|..|++ .|++|++.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence            7999999999999999998 8999999998754

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.94  E-value=0.7  Score=46.22  Aligned_cols=33  Identities=15%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.|||+|..|...|..|++ .|++|.++|+.+.
T Consensus         5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~   37 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDE   37 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHH
Confidence            48999999999999999999 7999999998643

>KOG3923|consensus

Probab=86.52  E-value=0.95  Score=44.91  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhc-----C-CCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSE-----I-PHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe-----~-~G~~VLVLEaG~~  104 (511)
                      ..+++|||+|..||++|..+.+     . +-.+|.|++--..
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~   44 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT   44 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence            4689999999999999977665     2 5578888875443

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=86.42  E-value=0.49  Score=49.51  Aligned_cols=38  Identities=34%  Similarity=0.605  Sum_probs=31.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC------------CCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI------------PHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~------------~G~~VLVLEaG~~~~  106 (511)
                      -.+++|||||+.|.=.|.+|++.            ...+|.|+|+++...
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL  204 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL  204 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence            36799999999999999999862            124999999998754

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=86.40  E-value=0.73  Score=38.49  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=29.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .-.++|||||..|..-+..|.+ .|.+|+|+...
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence            4679999999999999999999 89999999765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.35  E-value=0.75  Score=46.07  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=30.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|.|||+|..|...|..++. .|++|+++|+.+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence            48899999999999999999 8999999998764

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.32  E-value=0.79  Score=46.65  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|.|||+|..|...|..++. .|++|++.|..+.
T Consensus         9 ~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~   41 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPG   41 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence            38899999999999999999 8999999998653

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=86.26  E-value=0.93  Score=42.91  Aligned_cols=33  Identities=21%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .-.++|||||-.|...|..|.+ .|.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLK-YGAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEcCC
Confidence            3579999999999999999999 79999999753

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.17  E-value=0.71  Score=46.15  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=29.5

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.|||+|..|...|..|++ .|++|+++|+.+.
T Consensus         4 V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~   35 (288)
T PRK09260          4 LVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQE   35 (288)
T ss_pred             EEEECccHHHHHHHHHHHh-CCCcEEEEeCCHH
Confidence            8999999999999999999 7999999998753

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=86.01  E-value=1  Score=38.00  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=28.4

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |||+|.|..|..+|..|.+ .+.+|+++|+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence            7999999999999999999 7889999998753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG1346|consensus

Probab=85.98  E-value=4.4  Score=42.17  Aligned_cols=50  Identities=24%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML  336 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~  336 (511)
                      +...|+-++.+..|.+|..+++     -|.+. +|.  +|.=+| .+||+|.  +|+-|..
T Consensus       267 ~~nGGvAvl~G~kvvkid~~d~-----~V~Ln-DG~--~I~Ydk-cLIATG~--~Pk~l~~  316 (659)
T KOG1346|consen  267 AVNGGVAVLRGRKVVKIDEEDK-----KVILN-DGT--TIGYDK-CLIATGV--RPKKLQV  316 (659)
T ss_pred             cccCceEEEeccceEEeecccC-----eEEec-CCc--Eeehhh-eeeecCc--Ccccchh
Confidence            4567899999999999977652     23343 444  566664 9999998  8875544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=85.94  E-value=1  Score=40.85  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEc
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE  100 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLE  100 (511)
                      .-.++|||||..|.--|..|.+ .|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence            3569999999999999999998 899999994

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.27  E-value=0.98  Score=48.14  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|.+|+.+|..|++ .|++|.++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            458999999999999999999 899999999864

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=84.76  E-value=0.98  Score=46.20  Aligned_cols=32  Identities=25%  Similarity=0.509  Sum_probs=29.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|++|.++++..
T Consensus         4 kI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAA-AGADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence            48999999999999999999 799999999853

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=84.35  E-value=1.3  Score=41.93  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=31.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      ....|+|||+|..|+.+|..|++ .|. +|.|+|...
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~   55 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDV   55 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence            45789999999999999999999 898 699999763

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=84.01  E-value=1.4  Score=41.90  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=28.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      --++|||||..|..-|..|.+ .|.+|+|+...
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLK-AGAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence            369999999999999999999 89999999754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.96  E-value=1.2  Score=44.58  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|++|+++|+.+
T Consensus         6 kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            48999999999999999999 799999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=83.31  E-value=1.3  Score=44.24  Aligned_cols=33  Identities=15%  Similarity=0.310  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.|||+|..|...|..|+. .|.+|.++|+.+.
T Consensus         5 ~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~   37 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEE   37 (291)
T ss_pred             EEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHH
Confidence            38899999999999999999 7999999998753

>PRK04148 hypothetical protein; Provisional

Probab=83.17  E-value=1  Score=39.62  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=29.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.+++||.| .|..+|..|++ .|.+|+.+|..+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence            459999999 88888999998 7999999998764

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.06  E-value=1.3  Score=45.01  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=29.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||+|..|...|..|++ .|++|.++.|..
T Consensus         2 kI~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS-KKISVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence            37899999999999999999 799999999854

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=82.65  E-value=1.5  Score=45.04  Aligned_cols=36  Identities=28%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      ...-|+|||+|..|+.+|..|++ .|. ++.|+|....
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~v   59 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYV   59 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence            45679999999999999999999 887 8999998753

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=82.20  E-value=1.7  Score=43.02  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~  103 (511)
                      ....|+|||.|..|+.+|..|++ .| .+++|+|...
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar-~GVg~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALAR-TGIGAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCE
Confidence            46789999999999999999999 78 5899999764

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.19  E-value=1.8  Score=44.18  Aligned_cols=32  Identities=19%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|.+|++ .|++|.++++.+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            48999999999999999999 799999999864

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=82.17  E-value=3.3  Score=46.10  Aligned_cols=62  Identities=18%  Similarity=0.146  Sum_probs=45.7

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .|....++.|++++++..++.|.-+   +++.+|++.++.   .+.|+ -||.|+|.--.-.+-..+||
T Consensus       192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~---~i~ad-~VV~a~GIrPn~ela~~aGl  253 (793)
T COG1251         192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGT---EIPAD-LVVMAVGIRPNDELAKEAGL  253 (793)
T ss_pred             HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCC---cccce-eEEEecccccccHhHHhcCc
Confidence            4555567889999999988888753   578888887543   57887 69999998444456666665

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.94  E-value=1.4  Score=43.92  Aligned_cols=33  Identities=15%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.|||+|..|...|..|++ .|++|+++|..+.
T Consensus         5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~~   37 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISDA   37 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCHH
Confidence            48999999999999999999 7999999997643

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=81.70  E-value=2  Score=38.01  Aligned_cols=32  Identities=28%  Similarity=0.399  Sum_probs=28.7

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      |+|||.|..|+.+|..|++ .|. ++.|+|....
T Consensus         2 VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~v   34 (143)
T cd01483           2 VLLVGLGGLGSEIALNLAR-SGVGKITLIDFDTV   34 (143)
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCc
Confidence            7899999999999999999 787 7999997643

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=81.30  E-value=1.8  Score=37.97  Aligned_cols=35  Identities=23%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~  103 (511)
                      +.-.++|||+|-+|-.++..|++ .|.+ |.|+-|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECCH
Confidence            34679999999999999999999 6775 99998864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=81.19  E-value=1.6  Score=45.08  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=29.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||+|..|++.|.-||+ -|+.|+.+|..+
T Consensus         2 kI~viGtGYVGLv~g~~lA~-~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAE-LGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHH-cCCeEEEEeCCH
Confidence            47899999999999999999 899999999754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=81.03  E-value=2  Score=44.16  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=31.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      ....|+|||+|..|+.+|..|++ .|. ++.|+|...
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence            46789999999999999999999 788 899999864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=80.97  E-value=1.8  Score=37.87  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=29.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      .-|+|||+|..|+.+|..|++ .|. ++.|+|....
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~-~Gv~~i~lvD~d~v   37 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLAR-SGVGKITLVDDDIV   37 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHH-HTTSEEEEEESSBB
T ss_pred             CEEEEECcCHHHHHHHHHHHH-hCCCceeecCCcce
Confidence            458999999999999999999 787 7999997743

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=80.92  E-value=1.7  Score=43.96  Aligned_cols=32  Identities=22%  Similarity=0.315  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|+.|.++++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            48999999999999999999 799999999864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=80.64  E-value=1.9  Score=44.89  Aligned_cols=34  Identities=21%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +++|||+|..|.++|..||++...+|+|.+|...
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~   36 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE   36 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence            6899999999999999999943389999999853

>TIGR00518 alaDH alanine dehydrogenase

Probab=80.11  E-value=2  Score=44.75  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..+++|||+|.+|..+|..|.. .|.+|.++++..
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~~  200 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANG-LGATVTILDINI  200 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            4569999999999999999998 799999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=80.02  E-value=1.8  Score=43.79  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=29.2

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +.|+|+|+.|+..|++|++ .|..|+++=|.+.
T Consensus         3 I~IlGaGAvG~l~g~~L~~-~g~~V~~~~R~~~   34 (307)
T COG1893           3 ILILGAGAIGSLLGARLAK-AGHDVTLLVRSRR   34 (307)
T ss_pred             EEEECCcHHHHHHHHHHHh-CCCeEEEEecHHH
Confidence            7899999999999999999 7889999988764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	511
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		2e-31
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		2e-31
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		2e-30
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		2e-26
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		3e-25
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		3e-25
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		4e-25
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		5e-25
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		1e-18
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		1e-18
3red_A	521	3.0 A Structure Of The Prunus Mume Hydroxynitrile L		1e-17
1naa_A	541	Cellobiose Dehydrogenase Flavoprotein Fragment In C		2e-07
1kdg_A	546	Crystal Structure Of The Flavin Domain Of Cellobios		2e-07

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 169/338 (50%), Gaps = 44/338 (13%)
Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV--DIPVLNTNLIL-SPLNW 125
           ++D+++VGAG  G  VA RL+E P   +L+LEAG     ++  + P+L   L+  S  +W
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
            Y T      A  G  G+   +P G+ +GG+S ++ M+  RG+  ++D +A + G+ GW+
Sbjct: 62  NYTTT-----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116
Query: 185 YNEVLPYFKKAERI-QISELQNSS------YHGTQGFIGVDYTEYNTPMLDA-------- 229
           ++ +  + +K E +   ++  N+S       HGT G + +    + TP+ D         
Sbjct: 117 WDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQEQ 176
Query: 230 ----FLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKD 285
               F    M  G+PL         G + + A++    R SS+  Y+ P + R NL+V  
Sbjct: 177 SEEFFFNPDMGTGHPL---------GISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLI 227
Query: 286 SSFVKKILIDPVTKK----ACGVLATIKGIDHK-ILARKEVILSAGAFNSPKLLMLSGIG 340
           ++ V K++    T       C   A  +G     + A+KEV+LSAG+  +P LL LSGIG
Sbjct: 228 NAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIG 287
Query: 341 PQEHLNDLNI-PVIKNLRVGENLQEHLAMAGLTFLVNQ 377
            +  L+ + I  ++ N  VG NL +HL +    F VN 
Sbjct: 288 DENDLSSVGIDTIVNNPSVGRNLSDHLLLPA-AFFVNS 324

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 168/341 (49%), Gaps = 35/341 (10%)
Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNT-----NLILSPLN 124
           +DF+IVG G  G TVA RL+E P+  +L++EAG       DIP + T     +L  S  +
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAG--IGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 125 WGYKT---EKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNY 181
           W YKT    ++D            P   GK +GG+S +N   +  G+K  +D W + G  
Sbjct: 65  WAYKTTMVRRDDYERI------EKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118
Query: 182 GWSYNEVLPYFKKA------ERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGM 235
            W+++ ++PY +K+       R+   EL+     G       +  +   P  +   +A  
Sbjct: 119 EWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWK 178
Query: 236 EAGYPLVD--YNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKIL 293
             G PL++  Y+G+   G      T++ R +RS +  ++   K + N+T+      K+++
Sbjct: 179 SMGQPLIENIYDGEMD-GLTHCCDTIY-RGQRSGSFLFV---KNKPNITIVPEVHSKRLI 233
Query: 294 IDPVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV 352
           I+   +   GV + T  G +    A +EVILS G F +PKLLMLSGIGP   L+   I  
Sbjct: 234 INEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINT 293
Query: 353 IKNLR-VGENLQEHLAMAGLTFLVNQPIGL-LQDRLIKEMP 391
           I + R VG+NL +H    G+ F++    G  + D L++  P
Sbjct: 294 IVDSRHVGQNLMDH---PGVPFVLRVKDGFGMDDVLLRHGP 331

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 105/319 (32%), Positives = 161/319 (50%), Gaps = 34/319 (10%)
Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY-FNYLVDIPVLNT--NLILSPLNWGY 127
           D+II G G  G T A RL+E P+  +L++E+G Y  +    I  LN   ++  S ++  Y
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAY 80
Query: 128 KTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYN 186
           +T +      L    Q     SG G+GG++L+N   +TR +K   D W  + GN GW+++
Sbjct: 81  ETVE------LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWD 134
Query: 187 EVLPYFKKAER--------IQISELQNSSYHGTQGFI-------GVDYTEYNTPMLDAFL 231
            V  Y  +AER        I      N+S HG  G +       G DY+    P++ A +
Sbjct: 135 NVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYS----PIVKALM 190
Query: 232 QAGMEAGYPLV-DYNGKTQTGFARAQATLHKRSRRS-SAKDYIDPIKKRCNLTVKDSSFV 289
            A  + G P   D+      G +    TLH+   RS +A++++ P  +R NL V    +V
Sbjct: 191 SAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYV 250
Query: 290 KKILI--DPVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 346
            K+L+  +  T +A GV   T KG  H + A+ EV+L+AG+  SP +L  SGIG +  L 
Sbjct: 251 GKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILE 310
Query: 347 DLNIPVIKNLRVGENLQEH 365
            L I  + +L VG NLQ+ 
Sbjct: 311 PLGIDTVVDLPVGLNLQDQ 329

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score =  117 bits (292), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 157/316 (49%), Gaps = 19/316 (6%)
Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDI--PVLNTNLILSPLNWGYK 128
           D +IVG G  G  +A RLSE P  ++LL+EAG       DI  P     L     +W Y+
Sbjct: 19  DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYR 77
Query: 129 TEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNE 187
           TE +      G  G+   W  G+ +GG+S ++ M Y RG+  ++  W    G+  W ++E
Sbjct: 78  TEAQ-----AGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDE 132
Query: 188 VLPYFKKAERIQISELQNSSYHGTQGFIGVDY-TEYNTPMLDAFLQAGMEAGYPLVD-YN 245
           +LP F+    I+   L     HG  G + +    +  +P+  AF++AG   G P ++ +N
Sbjct: 133 LLPVFQA---IEDHPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLEGHN 189
Query: 246 GKTQTGFARAQATLHKRSRRSSAKDYI-DPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 304
                G       +    R ++A  ++   ++ R NLT+   S V+++ ++    ++  V
Sbjct: 190 SGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEGNQVRSLEV 249
Query: 305 LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNL-RVGENLQ 363
           +   +    ++ A  +++L AGA  SP LLM SGIGP + L+   +  + ++  +G NLQ
Sbjct: 250 VG--RQGSAEVFA-DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQ 306
Query: 364 EHLAMAGLTFLVNQPI 379
           +HL  AG  +   +P+
Sbjct: 307 DHLLGAGNLYAARKPV 322

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 160/320 (50%), Gaps = 18/320 (5%)
Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLN--TNLILSPLNWG 126
           E+D+I+VG G  G  VA RLSE P   + L+EAG     + ++  L+    L+ S  +W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 185
           Y  E ++      ++  R      K +GG S  N+ +     + + D+W AK G  GW+ 
Sbjct: 73  YPIEPQENGNSF-MRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 245
               P +K+ E  + +   ++ +HG  G + +       P   A L A  +AG P   +N
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 246 GKTQTGFARAQATLHKR---SRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 302
             T          +++R   +R SS+  YI PI ++ N T+      ++++ D   ++  
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 303 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV-IKNLRVG 359
           GV  + +  G  H++ AR EV+LS GA ++PKLLMLSGIGP  HL +  I V + +  VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 360 ENLQEHLAMAGLTFLVNQPI 379
           E+LQ+H     + F   QP+
Sbjct: 305 EHLQDH-PEGVVQFEAKQPM 323

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 160/320 (50%), Gaps = 18/320 (5%)
Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLN--TNLILSPLNWG 126
           E+D+I+VG G  G  VA RLSE P   + L+EAG     + ++  L+    L+ S  +W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 185
           Y  E ++      ++  R      K +GG S  N+ +     + + D+W AK G  GW+ 
Sbjct: 73  YPIEPQENGNSF-MRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 245
               P +K+ E  + +   ++ +HG  G + +       P   A L A  +AG P   +N
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 246 GKTQTGFARAQATLHKR---SRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 302
             T          +++R   +R SS+  YI PI ++ N T+      ++++ D   ++  
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 303 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV-IKNLRVG 359
           GV  + +  G  H++ AR EV+LS GA ++PKLLMLSGIGP  HL +  I V + +  VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 360 ENLQEHLAMAGLTFLVNQPI 379
           E+LQ+H     + F   QP+
Sbjct: 305 EHLQDH-PEGVVQFEAKQPM 323

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score =  112 bits (281), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 159/320 (49%), Gaps = 18/320 (5%)
Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLN--TNLILSPLNWG 126
           E+D+I+VG G  G  VA RLSE P   + L+EAG     + ++  L+    L+ S  +W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 185
           Y  E ++      ++  R      K +GG S  N  +     + + D+W AK G  GW+ 
Sbjct: 73  YPIEPQENGNSF-MRHARA-----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNA 126
Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 245
               P +K+ E  + +   ++ +HG  G + +       P   A L A  +AG P   +N
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 246 GKTQTGFARAQATLHKR---SRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 302
             T          +++R   +R SS+  YI PI ++ N T+      ++++ D   ++  
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFD-ADRRCT 244
Query: 303 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV-IKNLRVG 359
           GV  + +  G  H++ AR EV+LS GA ++PKLLMLSGIGP  HL +  I V + +  VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 360 ENLQEHLAMAGLTFLVNQPI 379
           E+LQ+H     + F   QP+
Sbjct: 305 EHLQDH-PEGVVQFEAKQPM 323

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score =  112 bits (280), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 155/316 (49%), Gaps = 27/316 (8%)
Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWG--Y 127
           YD+II G G  G TVA +L+E P  K+L++E G Y +        +  +I  P  +G  +
Sbjct: 25  YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESN-------DGAIIEDPNAYGQIF 77
Query: 128 KTEKEDCRACLGLKGQRCP-WPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSY 185
            T  +     + L   R     +GKG+GG++LIN   +TR +K   D W K+ G  GW++
Sbjct: 78  GTTVDQNYLTVPLINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNW 137
Query: 186 NEVLPYFKKAE--------RIQISELQNSSYHGTQGFI---GVDYTEYNTPMLDAFLQAG 234
           + +  Y KKAE        ++      N++ HGT G +     D  +  +P++ A +   
Sbjct: 138 DNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNTV 197
Query: 235 MEAGYPLV-DYNGKTQTGFARAQATLHK-RSRRSSAKDYIDPIKKRCNLTVKDSSFVKKI 292
              G P+  D+      G +     L + + R  +A+ ++ P  +R NL +     V K+
Sbjct: 198 SALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKV 257
Query: 293 LIDPVTK--KACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLN 349
           L        +A GV   T K ++  + A+ EV+L+AG+  SP +L  SGIG +  L+  N
Sbjct: 258 LFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQAN 317
Query: 350 IPVIKNLRVGENLQEH 365
           +  + +L VG N+Q+ 
Sbjct: 318 VTQLLDLPVGINMQDQ 333

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 147/337 (43%), Gaps = 62/337 (18%)
Query: 48  EDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107
            D  F  L +     D +L   YD++IVG G  GC +A  LSE   +K+L+LE G     
Sbjct: 5   SDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG----- 57
Query: 108 LVDIPVLNTNLILSPLNWGYKTEKEDCRACL--------GLKGQRCPWPSGKGVGGTSLI 159
              +P    N +L+   + Y  ++ED             G+   R     G+ +GGTS+I
Sbjct: 58  --SLPTAYPN-VLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVR-----GRVLGGTSII 109
Query: 160 NTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY 219
           N  +Y R N   Y          W  + V   ++  E   + +  + S+           
Sbjct: 110 NAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTK------ 159
Query: 220 TEYNTPMLDAFLQAGMEA--GYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK 277
                    AFL+AG+    G+ L    G   TG     +T   +  R +A + ++    
Sbjct: 160 --------TAFLEAGVHPNHGFSLDHEEGTRITG-----STFDNKGTRHAADELLNK-GN 205
Query: 278 RCNLTVKDSSFVKKILIDPVTKKACGVLAT------IKGIDHKILARK--EVILSAGAFN 329
             NL V   + V+KI+       A G+ AT        G  H+   R   EVI+SAG   
Sbjct: 206 SNNLRVGVHASVEKIIF----SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIG 261
Query: 330 SPKLLMLSGIGPQEHLNDLNIPVI-KNLRVGENLQEH 365
           +P+LL+LSG+GP+ +L+ LNIPV+  +  VG+ L ++
Sbjct: 262 TPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 147/337 (43%), Gaps = 62/337 (18%)
Query: 48  EDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107
            D  F  L +     D +L   YD++IVG G  GC +A  LSE   +K+L+LE G     
Sbjct: 5   SDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG----- 57
Query: 108 LVDIPVLNTNLILSPLNWGYKTEKEDCRACL--------GLKGQRCPWPSGKGVGGTSLI 159
              +P    N +L+   + Y  ++ED             G+   R     G+ +GGTS+I
Sbjct: 58  --SLPTAYPN-VLTADGFVYNLQQEDDGKTPVERFVSEDGIDNVR-----GRVLGGTSII 109
Query: 160 NTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY 219
           N  +Y R N   Y          W  + V   ++  E   + +  + S+           
Sbjct: 110 NAGVYARANTSIY----SASGVDWDMDLVNQTYEWVEDTIVYKPNSQSWQSVTK------ 159
Query: 220 TEYNTPMLDAFLQAGMEA--GYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK 277
                    AFL+AG+    G+ L    G   TG     +T   +  R +A + ++    
Sbjct: 160 --------TAFLEAGVHPNHGFSLDHEEGTRITG-----STFDNKGTRHAADELLNK-GN 205
Query: 278 RCNLTVKDSSFVKKILIDPVTKKACGVLAT------IKGIDHKILARK--EVILSAGAFN 329
             NL V   + V+KI+       A G+ AT        G  H+   R   EVI+SAG   
Sbjct: 206 SNNLRVGVHASVEKIIF----SNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIG 261
Query: 330 SPKLLMLSGIGPQEHLNDLNIPVI-KNLRVGENLQEH 365
           +P+LL+LSG+GP+ +L+ LNIPV+  +  VG+ L ++
Sbjct: 262 TPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 298

>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 Length = 521

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 51/331 (15%)
Query: 49  DGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYL 108
           D  F  L +     D +L   YD++IVG G  GC +A  LSE   +K+L+LE G      
Sbjct: 6   DHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERG------ 57
Query: 109 VDIPVLNTNLILSPLNWGYKTEKED---CRACLGLKGQRCPWPSGKGVGGTSLINTMLYT 165
             +P    NL+ S   + Y  ++ED         + G       G+ +GGTS+IN  +Y 
Sbjct: 58  -TLPTAYPNLLTSD-GFIYNLQQEDDGQTPVERFVSGDGIDDVRGRVLGGTSMINAGVYA 115
Query: 166 RGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQIS-ELQNSSYHGTQGFI--GVDYTEY 222
           R N + +                      A  I+   +L N +Y   +  I    D   +
Sbjct: 116 RANTKIF---------------------SASGIEWDMDLVNQTYDWVEDTIVYKPDKQAW 154
Query: 223 NTPMLDAFLQAGM--EAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCN 280
            +    AFL+AG+  + G+ L    G   TG     +T      R ++ + ++      N
Sbjct: 155 QSLTKTAFLEAGVLPDNGFSLDHEAGTRLTG-----STFDNNGTRHASDELLNKGDPN-N 208
Query: 281 LTVKDSSFVKKILIDPVTKKACGVLATIK---GIDHKILARKE--VILSAGAFNSPKLLM 335
           L V   + V+KI+    +     +    K   G  H+   R E  VI+SAG   SP+LL+
Sbjct: 209 LRVAVHASVEKIIFSSNSSGVTAIGVIYKDSNGTPHQAFVRGEGEVIVSAGPIGSPQLLL 268
Query: 336 LSGIGPQEHLNDLNIPVI-KNLRVGENLQEH 365
           LSG+GP+ +L+ LNIPV+  +  VG+ L ++
Sbjct: 269 LSGVGPESYLSSLNIPVVLSHPYVGQFLHDN 299

>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam Length = 541

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 125/334 (37%), Gaps = 63/334 (18%)
Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF------NYLV-----------DI 111
            YD+IIVGAGPGG   A+RLSE    K+LLLE G          Y+            DI
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60
Query: 112 PVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRN 171
           P L  +L      + +  +      CL              VGG + +N  LY   N  +
Sbjct: 61  PGLFESLFTDSNPFWWCKDITVFAGCL--------------VGGGTSVNGALYWYPNDGD 106
Query: 172 YDDWAKLGNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
           +       + GW  S+    PY  K      S L ++ +  T    G  Y E +  ++  
Sbjct: 107 FSS-----SVGWPSSWTNHAPYTSKLS----SRLPSTDHPSTD---GQRYLEQSFNVVSQ 154
Query: 230 FLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFV 289
            L+        + D        F  +        R      Y+     R N T K +  V
Sbjct: 155 LLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMV 214
Query: 290 KKILIDPVTKKACGVLATIKGIDHK----ILARKEVILSAGAFNSPKLLMLSGIGPQEHL 345
             ++ +    +  GV      +       +  +  VILSAGAF + ++L  SGIGP + +
Sbjct: 215 SNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMI 272
Query: 346 NDLN--------IPVIK---NLRVGENLQEHLAM 368
             +         +P      NL VG N Q++ ++
Sbjct: 273 QTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI 306

>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase Length = 546

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 125/334 (37%), Gaps = 63/334 (18%)
Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF------NYLV-----------DI 111
            YD+IIVGAGPGG   A+RLSE    K+LLLE G          Y+            DI
Sbjct: 7   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 112 PVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRN 171
           P L  +L      + +  +      CL              VGG + +N  LY   N  +
Sbjct: 66  PGLFESLFTDSNPFWWCKDITVFAGCL--------------VGGGTSVNGALYWYPNDGD 111
Query: 172 YDDWAKLGNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
           +       + GW  S+    PY  K      S L ++ +  T    G  Y E +  ++  
Sbjct: 112 FSS-----SVGWPSSWTNHAPYTSKLS----SRLPSTDHPSTD---GQRYLEQSFNVVSQ 159
Query: 230 FLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFV 289
            L+        + D        F  +        R      Y+     R N T K +  V
Sbjct: 160 LLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMV 219
Query: 290 KKILIDPVTKKACGVLATIKGIDH----KILARKEVILSAGAFNSPKLLMLSGIGPQEHL 345
             ++ +    +  GV      +       +  +  VILSAGAF + ++L  SGIGP + +
Sbjct: 220 SNVVRN--GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMI 277
Query: 346 NDLN--------IPVIK---NLRVGENLQEHLAM 368
             +         +P      NL VG N Q++ ++
Sbjct: 278 QTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI 311

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	511
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	1e-146
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	1e-142
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	1e-139
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	1e-139
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	1e-124
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	1e-121
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	1e-117
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	1e-102
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	3e-29
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	1e-26
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	7e-23
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	1e-05
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	2e-05
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	5e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	1e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	1e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	2e-04
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	3e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	4e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-04
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	5e-04
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	6e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	8e-04
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	9e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  430 bits (1107), Expect = e-146
 Identities = 97/419 (23%), Positives = 172/419 (41%), Gaps = 38/419 (9%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPVLNTNLILSPLNW 125
            YD+II G G  G TVA +L+E P  K+L++E G        +++ P     +  + ++ 
Sbjct: 24  TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
            Y T          +  +     +GKG+GG++LIN   +TR +K   D W K+ G  GW+
Sbjct: 84  NYLTVP-------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136

Query: 185 YNEVLPYFKKAE--------RIQISELQNSSYHGTQGFIGVDYTEY---NTPMLDAFLQA 233
           ++ +  Y KKAE        ++      N++ HGT G +     +     +P++ A +  
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196

Query: 234 GMEAGYPLV-DYNGKTQTGFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKK 291
               G P+  D+      G +     L +   R  +A+ ++ P  +R NL +     V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256

Query: 292 ILIDPVT--KKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
           +L        +A GV   T K ++  + A+ EV+L+AG+  SP +L  SGIG +  L+  
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQA 316

Query: 349 NIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLS-PITN 407
           N+  + +L VG N+Q+      ++   +           +   V FA             
Sbjct: 317 NVTQLLDLPVGINMQDQT-TTTVSSRASSAGAG------QGQAVFFANFTETFGDYAPQA 369

Query: 408 SETLSTNIKTIFAAH---HDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVS 463
            + L+T +              N +   +     ++ +             T GK    
Sbjct: 370 RDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINFD 428

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  419 bits (1080), Expect = e-142
 Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 27/333 (8%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPVLNTNLILSPLNW 125
             D+II G G  G T A RL+E P+  +L++E+G        +++      ++  S ++ 
Sbjct: 19  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
            Y+T +           Q     SG G+GG++L+N   +TR +K   D W  + GN GW+
Sbjct: 79  AYETVEL------ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132

Query: 185 YNEVLPYFKKAE--------RIQISELQNSSYHGTQGFIGV---DYTEYNTPMLDAFLQA 233
           ++ V  Y  +AE        +I      N+S HG  G +     D  +  +P++ A + A
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192

Query: 234 GMEAGYPLV-DYNGKTQTGFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKK 291
             + G P   D+      G +    TLH+   R  +A++++ P  +R NL V    +V K
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGK 252

Query: 292 ILIDP--VTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
           +L+     T +A GV   T KG  H + A+ EV+L+AG+  SP +L  SGIG +  L  L
Sbjct: 253 VLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPL 312

Query: 349 NIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGL 381
            I  + +L VG NLQ+      +   +      
Sbjct: 313 GIDTVVDLPVGLNLQDQTTA-TVRSRITSAGAG 344

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  411 bits (1059), Expect = e-139
 Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 30/335 (8%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG----HYFNYLVDIPVLNTNLILSP-L 123
           ++D+++VGAG  G  VA RL+E P   +L+LEAG    +      + P+L   L+ +   
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLG--AEAPLLAPGLVPNSIF 59

Query: 124 NWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYG 182
           +W Y T      A  G  G+   +P G+ +GG+S ++ M+  RG+  ++D +A + G+ G
Sbjct: 60  DWNYTTT-----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEG 114

Query: 183 WSYNEVLPYFKKAERIQ-------ISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGM 235
           W+++ +  + +K E +         S     + HGT G + +    + TP+ D  L    
Sbjct: 115 WNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQ 174

Query: 236 EAGYPLV---DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKI 292
           E         D       G + + A++    R SS+  Y+ P + R NL+V  ++ V K+
Sbjct: 175 EQSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKL 234

Query: 293 LIDPVTKK-----ACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLND 347
           +    T                     + A+KEV+LSAG+  +P LL LSGIG +  L+ 
Sbjct: 235 VNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSS 294

Query: 348 LNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGL 381
           + I  I N   VG NL +HL +    F VN     
Sbjct: 295 VGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQTF 328

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  411 bits (1059), Expect = e-139
 Identities = 95/332 (28%), Positives = 149/332 (44%), Gaps = 24/332 (7%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY---FNYLVDIPVLNTNLILSPLNW 125
            +DF+IVG G  G TVA RL+E P+  +L++EAG         +  P    +L  S  +W
Sbjct: 6   HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65

Query: 126 GYKTEKEDCRACLGLKGQRCPWPS--GKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW 183
            YKT             +R   P+  GK +GG+S +N   +  G+K  +D W + G   W
Sbjct: 66  AYKTTMVR-----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120

Query: 184 SYNEVLPYFKKAE---RIQISELQNSSYHGTQGFIGV---DYTEYNTPMLDAFLQAGMEA 237
           +++ ++PY +K+                 G  G I +   +  +   P  +   +A    
Sbjct: 121 TWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSM 180

Query: 238 GYPLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDP 296
           G PL+ +       G      T   R +RS +      +K + N+T+      K+++I+ 
Sbjct: 181 GQPLIENIYDGEMDGLTHCCDT-IYRGQRSGSF---LFVKNKPNITIVPEVHSKRLIINE 236

Query: 297 VTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKN 355
             +   GV + T  G +    A +EVILS G F +PKLLMLSGIGP   L+   I  I +
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296

Query: 356 LR-VGENLQEHLAMAGLTFLVNQPIGLLQDRL 386
            R VG+NL +H  +      V    G+    L
Sbjct: 297 SRHVGQNLMDHPGV-PFVLRVKDGFGMDDVLL 327

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  371 bits (955), Expect = e-124
 Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 21/322 (6%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPVLNTNLILSPLNW 125
             D +IVG G  G  +A RLSE P  ++LL+EAG         +  P     L     +W
Sbjct: 17  NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDP--DIWNPAAWPALQGRSYDW 74

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
            Y+TE +      G  G+   W  G+ +GG+S ++ M Y RG+  ++  W    G+  W 
Sbjct: 75  DYRTEAQA-----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWG 129

Query: 185 YNEVLPYFKKAERIQISELQNSSYHGTQGFIGV-DYTEYNTPMLDAFLQAGMEAGYPLV- 242
           ++E+LP F+  E      L     HG  G + +    +  +P+  AF++AG   G P + 
Sbjct: 130 WDELLPVFQAIED---HPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLE 186

Query: 243 DYNGKTQTGFARAQATLHKRSRRSSAKDYIDP-IKKRCNLTVKDSSFVKKILIDPVTKKA 301
            +N     G       +    R ++A  ++   ++ R NLT+   S V+++ ++    + 
Sbjct: 187 GHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQV 244

Query: 302 CGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGE 360
             +    +    ++ A  +++L AGA  SP LLM SGIGP + L+   +  + ++  +G 
Sbjct: 245 RSLEVVGRQGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGR 303

Query: 361 NLQEHLAMAGLTFLVNQPIGLL 382
           NLQ+HL  AG  +   +P+   
Sbjct: 304 NLQDHLLGAGNLYAARKPVPPS 325

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  364 bits (936), Expect = e-121
 Identities = 97/322 (30%), Positives = 149/322 (46%), Gaps = 18/322 (5%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG-HYFNYLVDIPVLNTNLILSP-LNWG 126
           E+D+I+VG G  G  VA RLSE P   + L+EAG         + +     +L    +W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72

Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 185
           Y  E ++                 K +GG S  N+ +     + + D+W AK G  GW+ 
Sbjct: 73  YPIEPQE-----NG-NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126

Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLV-DY 244
               P +K+ E  + +   ++ +HG  G + +       P   A L A  +AG P     
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185

Query: 245 NGKTQT-GFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 302
            G T   G    Q        R SS+  YI PI ++ N T+      ++++ D   ++  
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDA-DRRCT 244

Query: 303 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VG 359
           GV  + +  G  H++ AR EV+LS GA ++PKLLMLSGIGP  HL +  I V+ +   VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304

Query: 360 ENLQEHLAMAGLTFLVNQPIGL 381
           E+LQ+H     + F   QP+  
Sbjct: 305 EHLQDHPEG-VVQFEAKQPMVA 325

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  353 bits (909), Expect = e-117
 Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 35/339 (10%)

Query: 48  EDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107
            D  F  L +     D +L   YD++IVG G  GC +A  LSE   +K+L+LE G     
Sbjct: 5   SDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTA 62

Query: 108 LVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRG 167
             ++   +  +         KT          +         G+ +GGTS+IN  +Y R 
Sbjct: 63  YPNVLTADGFVYNLQQEDDGKTP-----VERFVSEDGIDNVRGRVLGGTSIINAGVYARA 117

Query: 168 NKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPML 227
           N   Y          W  + V   ++  E           Y             + +   
Sbjct: 118 NTSIYSASGV----DWDMDLVNQTYEWVED-------TIVYKPNSQ-------SWQSVTK 159

Query: 228 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSS 287
            AFL+AG+   +    ++   + G     +T   +  R +A + ++      NL V   +
Sbjct: 160 TAFLEAGVHPNH---GFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHA 215

Query: 288 FVKKILIDPVT-KKACGVLATIKGIDHK---ILARKEVILSAGAFNSPKLLMLSGIGPQE 343
            V+KI+        A GV+            + ++ EVI+SAG   +P+LL+LSG+GP+ 
Sbjct: 216 SVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPES 275

Query: 344 HLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGL 381
           +L+ LNIPV+ +   VG+ L ++     +  L   PI  
Sbjct: 276 YLSSLNIPVVLSHPYVGQFLHDNP-RNFINILPPNPIEP 313

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  316 bits (812), Expect = e-102
 Identities = 76/339 (22%), Positives = 118/339 (34%), Gaps = 48/339 (14%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG----HYFNYLVDIPVLNTNLILSP-- 122
            YD+IIVGAGPGG   A+RLSE    K+LLLE G             P   ++ +     
Sbjct: 7   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65

Query: 123 --LNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGN 180
             L     T+            +     +G  VGG + +N  LY   N  ++        
Sbjct: 66  PGLFESLFTDSNP-----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV---- 116

Query: 181 YGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAG 238
            GW  S+    PY  K      S L ++ +  T G   +   E +  ++   L+      
Sbjct: 117 -GWPSSWTNHAPYTSKLS----SRLPSTDHPSTDGQRYL---EQSFNVVSQLLKG-QGYN 167

Query: 239 YPLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPV 297
              + D        F  +        R      Y+     R N T K +  V  ++ +  
Sbjct: 168 QATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN-- 225

Query: 298 TKKACGV----LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVI 353
             +  GV              +  +  VILSAGAF + ++L  SGIGP + +  +     
Sbjct: 226 GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPT 285

Query: 354 KNLR-----------VGENLQEHLAMAGLTFLVNQPIGL 381
                          VG N Q++ ++  L F        
Sbjct: 286 AAAALPPQNQWINLPVGMNAQDNPSI-NLVFTHPSIDAY 323

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score =  119 bits (300), Expect = 3e-29
 Identities = 54/335 (16%), Positives = 104/335 (31%), Gaps = 51/335 (15%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN--YLVDIPVLNTNLILSPLNWG 126
               +++G G G    A RL E    + L+LE G  +N                   +W 
Sbjct: 5   YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63

Query: 127 YKTEKEDCRACLGLKGQRCP-----------------WPSGKGVGGTSLINTMLYTRGNK 169
               +    + L L                          G+GVGG SL+N  +     +
Sbjct: 64  KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123

Query: 170 RNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
             +++         S      YF +A       +   ++  T+ F   ++ ++     + 
Sbjct: 124 SYFEEILPR---VDSSEMYDRYFPRANS-----MLRVNHIDTKWFEDTEWYKFARVSREQ 175

Query: 230 FLQAGMEAGY-PL-VDYNGKTQTGFARAQA--------TLHKRSRRSSAKDYIDPIKKRC 279
             +AG+   + P   D+    +                  +   ++S  K Y+       
Sbjct: 176 AGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTG 235

Query: 280 NLTVKDSSFVKKILIDPVTKKACGVLATIKG---IDHKILARKEVILSAGAFNSPKLLML 336
            +T++    VK I        A  V         +  K ++ + + L AG+  S +LL+ 
Sbjct: 236 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVR 295

Query: 337 SGI-GPQEHLNDLNIPVIKNLRVGENLQEHLAMAG 370
           +   G   +LN           VG     +  +  
Sbjct: 296 ARDTGTLPNLNS---------EVGAGWGPNGNIMT 321

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score =  112 bits (281), Expect = 1e-26
 Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 27/334 (8%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIP----VLNTNLILSPL 123
           ++YD +IVG+GP GCT A  L     +K+ + + G   + L         +     +   
Sbjct: 45  IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 103

Query: 124 NWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK---LGN 180
               + +       +         P+        + N     +   RN    A    +G 
Sbjct: 104 VNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 163

Query: 181 YGWSYNEVLPYFKKAER---------IQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFL 231
              ++    P F + +R            +E  +  Y   + +      ++   +    +
Sbjct: 164 MSTAWTCATPRFDREQRPLLVKDDADADDAEW-DRLYTKAESYFQTGTDQFKESIRHNLV 222

Query: 232 QAGMEAGYPLVDYNGKTQ----TGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSS 287
              +   Y     + +      T  +         +     ++  +         +  + 
Sbjct: 223 LNKLTEEYKG-QRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAV 281

Query: 288 FVKKILIDPVTKKACGV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHL 345
             ++++ + +  +   +     I G   +I A    +L+AGA ++ +LL+ SG G     
Sbjct: 282 ACERVVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFGQLGRP 340

Query: 346 NDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPI 379
           N    P      +G  + E   +   T +  + I
Sbjct: 341 NP-ANPPELLPSLGSYITEQSLVFCQTVMSTELI 373

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score =  100 bits (250), Expect = 7e-23
 Identities = 51/352 (14%), Positives = 108/352 (30%), Gaps = 59/352 (16%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIP--VLNTNLILSPLNWG 126
               +++G+G GG   A RL++       ++E G  ++                    W 
Sbjct: 11  RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69

Query: 127 YKTEKEDCRACLGLKGQR----------------CPWPSGKGVGGTSLINTMLYTRGNKR 170
                +     +G    +                     G+GVGG SL+N  +     + 
Sbjct: 70  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAER-IQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
            +++         S      YF +A   + ++ +  + +  T+ +               
Sbjct: 130 YFEEILPS---VDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWY----------KFART 176

Query: 230 FLQAGMEAGYPL------VDYNGKTQTGFARAQATLH--------KRSRRSSAKDYIDPI 275
             +    +G+         D+    +    +   +             ++S  K Y+   
Sbjct: 177 GRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQA 236

Query: 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKG---IDHKILARKEVILSAGAFNSPK 332
                LT+     V K+     +  +  +    +    +  K++    V  +AG+  + K
Sbjct: 237 AATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSK 296

Query: 333 LLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHL-AMAGLTFLVNQPIGLLQ 383
           LL+      Q HL +L      + +VGE    +   M G    +    G  Q
Sbjct: 297 LLVSMKA--QGHLPNL------SSQVGEGWGNNGNIMVGRANHMWDATGSKQ 340

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 58  KSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 105
               KD D     D IIVGAG  G + A  +++  P  K+ ++E+    
Sbjct: 54  SRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
            +D  +VG+G  G T+A R++     ++L+LE
Sbjct: 7   RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 45.8 bits (107), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAG 102
            +D +++GAG  G   A  L ++ P   +LL+E G
Sbjct: 36  AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
            D +++GAGP G   A RL++I     +++++   
Sbjct: 11  VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 62  KDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
            D     E D ++VGAG  G + A  +S+ P+ ++ ++E     
Sbjct: 32  TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 9e-05
 Identities = 84/551 (15%), Positives = 155/551 (28%), Gaps = 169/551 (30%)

Query: 52  FEQLEYKSSNKD------------------QDLLL------EYDFIIVGAGPGGCTVANR 87
           FE  E++   KD                  QD+        E D II        +   R
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLR 66

Query: 88  LSEIPHWKILL---------LEAGHYFNY--LVD-------IPVL-------------NT 116
           L     W +L          +E     NY  L+         P +             N 
Sbjct: 67  L----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 117 NLILSPLNWGYKTEKEDCRACLGLKGQRCPWPS--G-KGVGGTSLINTMLYTRGNKRNYD 173
           N + +  N          R  L L+ +        G  G G T +   +  +   +   D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 174 D---WAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
               W  L N               E + +  LQ   Y     +        N  +    
Sbjct: 182 FKIFWLNLKNC-----------NSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 231 LQAG-----MEAGYP---LV-D--YNGKTQTGF---ARAQATLHKRSRRSSAKDYIDPIK 276
           +QA          Y    LV     N K    F    +   T    +R     D++    
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSA-A 284

Query: 277 KRCNLTVKDSSFVKKILIDPVTK-KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 335
              ++++   S         +T  +   +L        + L R EV+ +     +P    
Sbjct: 285 TTTHISLDHHS-------MTLTPDEVKSLLLKYLDCRPQDLPR-EVLTT-----NP--RR 329

Query: 336 LSGIGP--QEHLN------DLNIP----VIK----NLRVGENLQEH---LAMAGLTFL-- 374
           LS I    ++ L        +N      +I+     L   E  ++    L++    F   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSV----FPPS 384

Query: 375 VNQPIGLLQ---DRLIKEMPVHFAGKL-RHSLSPITNSETLSTNIKTIFAAHHDKINKSG 430
            + P  LL      +IK   +    KL ++SL      E+      +I + + +   K  
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----SIPSIYLELKVKLE 440

Query: 431 EDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPV----WFWLVQ---NGCQMSG 483
            +  +   + ++       +P+ F +          + P     ++  +       +   
Sbjct: 441 NEYALH--RSIVD---HYNIPKTFDSDD-------LIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 484 KWSNL-YWYTD 493
           + +     + D
Sbjct: 489 RMTLFRMVFLD 499

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
            +D++IVGAG  G  +A RL+     ++L+++ 
Sbjct: 29  GFDYLIVGAGFAGSVLAERLASS-GQRVLIVDR 60

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 39  FDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKIL 97
           F    +S +   +     Y     D D   E D +IVGAG  G + A  LS + P  +I 
Sbjct: 54  FSPIRESTVSRAMTR--RY---FADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRIT 108

Query: 98  LLEAGHYF 105
           ++EAG   
Sbjct: 109 IVEAGVAP 116

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
           YD+IIVG+G  G   AN L ++ + K+L++E 
Sbjct: 2   YDYIIVGSGLFGAVCANELKKL-NKKVLVIEK 32

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
           L+YD +I+G G  G + A +LS     KILL+++  +
Sbjct: 5   LKYDVLIIGGGFAGSSAAYQLSRRGL-KILLVDSKPW 40

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104
           + D +++GAGP G   A+ +++    +K+ ++E   +
Sbjct: 5   KVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKF 39

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
               +IVGAG  G  +  +L+E    ++ +++ 
Sbjct: 3   SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQ 34

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
              +I+GAGP G   A RL+E+ +    L E    
Sbjct: 10  PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT 44

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
            +D I++G GPGG T+A+ ++     ++LLLE   +
Sbjct: 7   VFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAF 41

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
            +D+++VGAG  G   A  L       +L+++AGH
Sbjct: 23  RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	511
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	100.0
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	100.0
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	100.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.91
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.69
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.66
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.57
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.48
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.47
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.46
3dme_A	369	Conserved exported protein; structural genomics, P	99.42
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.38
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.37
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.36
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.35
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.33
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.33
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.32
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.31
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.29
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.27
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.26
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.25
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.24
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.23
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.23
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.19
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.19
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.14
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.14
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.13
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.13
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.12
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.11
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.07
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.07
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.06
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.04
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.03
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.98
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.97
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.92
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.89
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.85
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.84
3atr_A	453	Conserved archaeal protein; saturating double bond	98.84
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.82
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.79
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.79
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.78
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.75
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.74
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.71
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.7
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.7
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.68
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.67
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.66
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.66
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.62
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.61
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.61
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.6
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.6
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.58
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.58
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.56
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.56
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.55
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.54
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.54
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.53
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.53
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.53
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.53
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.51
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.5
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.5
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.5
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.5
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.49
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.48
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.45
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.45
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.42
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.41
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.41
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.41
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.4
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.4
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.4
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.37
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.35
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.33
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.31
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.3
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.29
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.28
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.25
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.24
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.22
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.21
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.21
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.19
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.19
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.18
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.18
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.18
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.17
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.17
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.16
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.15
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.14
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.14
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.14
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.11
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.1
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.09
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.08
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.06
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.06
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.05
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.98
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.97
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.96
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.96
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.94
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.94
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.92
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.91
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.91
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.89
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.87
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.83
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.81
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.79
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.79
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.78
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.78
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.76
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.76
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.75
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.73
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.73
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.73
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.72
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.72
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.71
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.71
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.7
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.7
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.7
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.69
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.66
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.66
4dna_A	463	Probable glutathione reductase; structural genomic	97.64
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.63
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.61
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.6
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.59
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.59
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.57
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.57
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.57
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.56
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.55
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.55
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.55
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.52
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.51
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.48
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.47
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.46
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.46
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.46
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.45
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.44
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.43
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.41
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.4
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.39
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.38
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.38
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.34
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.33
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.32
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.32
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.3
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.29
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.28
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.26
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.25
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.25
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.23
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.22
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.21
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.2
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.2
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.2
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.17
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.17
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.16
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.16
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.16
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.16
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.15
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.15
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.15
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.12
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.11
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.1
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.07
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.06
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.06
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.04
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.04
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.01
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	96.96
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.93
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.88
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.84
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	96.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.83
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	96.81
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	96.8
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.8
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.79
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.7
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.7
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	96.68
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	96.67
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.67
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.66
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	96.66
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.63
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.63
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	96.62
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.61
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.6
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	96.59
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	96.52
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.52
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.52
1fec_A	490	Trypanothione reductase; redox-active center, oxid	96.51
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	96.5
1ojt_A	482	Surface protein; redox-active center, glycolysis,	96.47
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.44
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.44
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.42
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	96.39
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.38
4dna_A	463	Probable glutathione reductase; structural genomic	96.36
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.35
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.33
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.28
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.24
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.17
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.07
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.03
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.88
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.84
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.81
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	95.75
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	95.74
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	95.6
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	95.33
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	95.26
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	95.2
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	94.85
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.32
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.28
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	93.04
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.69
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	92.41
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	92.32
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.28
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.22
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.32
4fk1_A	304	Putative thioredoxin reductase; structural genomic	90.73
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	90.32
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.3
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	89.53
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	89.39
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.09
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	88.73
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	88.63
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.5
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	88.29
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	88.26
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	88.13
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	87.83
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	87.7
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	87.62
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	87.54
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	87.33
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	86.65
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.57
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	86.42
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	86.13
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	86.11
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	85.86
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	85.86
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	85.23
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	85.22
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	85.13
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	84.93
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	84.83
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	84.58
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.51
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	84.41
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	83.99
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	83.4
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	83.35
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	83.31
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	83.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	82.83
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	82.71
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	82.49
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	82.38
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	82.13
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	81.94
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	81.88
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	81.85
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	81.8
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	81.71
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	81.58
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	81.23
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	81.1
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	80.81
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	80.58
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	80.54
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	80.47
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	80.46
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	80.46
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	80.43
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	80.32
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	80.29
3qha_A	296	Putative oxidoreductase; seattle structural genomi	80.23
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	80.19
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	80.02

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=2.1e-64  Score=546.62  Aligned_cols=395  Identities=27%  Similarity=0.428  Sum_probs=329.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC--Cccccccccccccc-CCCCcCCCccccccccccccCCCCcc
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF--NYLVDIPVLNTNLI-LSPLNWGYKTEKEDCRACLGLKGQRC  145 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~--~~~~~ip~~~~~~~-~~~~~w~~~t~p~~~~~~~~~~~~~~  145 (511)
                      +|||||||||+|||++|.||+|+++.+|||||||+..  .....+|.+..... ++.++|.|.++||.     .++++.+
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~-----~~~~r~~   76 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA-----GYNGRSI   76 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCG-----GGTTCCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCC-----CCCCceE
Confidence            6999999999999999999999889999999999865  45567887765555 47899999999999     7899999


Q ss_pred             ccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccc-------cCCCCCCCCccccc
Q psy760          146 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISEL-------QNSSYHGTQGFIGV  217 (511)
Q Consensus       146 ~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~-------~~~~~~g~~G~l~v  217 (511)
                      .|+|||+|||+|++|+|+|.|+++.||+.|+++ |+++|+|++++|||+|+|++..+..       .++.+|+.+||+++
T Consensus        77 ~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v  156 (566)
T 3fim_B           77 AYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSI  156 (566)
T ss_dssp             BCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEE
T ss_pred             eccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeee
Confidence            999999999999999999999999999999998 9999999999999999999875521       23468999999999


Q ss_pred             ccCCCCChHHHHHHHHHHHc--CCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEE
Q psy760          218 DYTEYNTPMLDAFLQAGMEA--GYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILI  294 (511)
Q Consensus       218 ~~~~~~~~~~~~~~~a~~~~--G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~  294 (511)
                      +...+..+....++++++++  |++. .|+|+....|+.+++.++.+|.|+++..+||.++.+|.|++|++++.|+||++
T Consensus       157 ~~~~~~~~~~~~~~~a~~~~~~G~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~  236 (566)
T 3fim_B          157 SLPGFPTPLDDRVLATTQEQSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVN  236 (566)
T ss_dssp             BSCSSCCTHHHHHHHHHHHTHHHHCBCSCGGGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEEC
T ss_pred             ecCCCCCHHHHHHHHHHHHHhcCCCccCCCCCCCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEe
Confidence            99988899999999999999  9997 57888888999999998889999999999999988899999999999999999


Q ss_pred             c---CCCCcEEEEEEEEC-C-eEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccC
Q psy760          295 D---PVTKKACGVLATIK-G-IDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAM  368 (511)
Q Consensus       295 d---~~~~ra~GV~~~~~-g-~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~  368 (511)
                      +   +++++|+||++..+ + +.++++|+||||||||+|+||||||+|||||+++|+++||+|++|+| ||+|||||+.+
T Consensus       237 ~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~~  316 (566)
T 3fim_B          237 SGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLL  316 (566)
T ss_dssp             CEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEE
T ss_pred             ecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCccc
Confidence            8   22268999999864 5 67789999999999999999999999999999999999999999999 99999999997


Q ss_pred             ceEEEEEcCCCCcchhhhhc--chHHHHHhHHhcCCCCcccCccccee-eeehhc-----cchh-hhhccCCCeEEEEec
Q psy760          369 AGLTFLVNQPIGLLQDRLIK--EMPVHFAGKLRHSLSPITNSETLSTN-IKTIFA-----AHHD-KINKSGEDITIRLIK  439 (511)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~~~~-----~~~~-~~~~~~~~~~~~~~~  439 (511)
                       .+.|.++.+.+... ...+  .....+.+|+..++||++..+....+ +++...     ...+ ......+++++.|..
T Consensus       317 -~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~G~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~  394 (566)
T 3fim_B          317 -PAAFFVNSNQTFDN-IFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSN  394 (566)
T ss_dssp             -CCEEEESCSCSSGG-GGTCHHHHHHHHHHHHHHSCSGGGCCSCSEEEEECCCTTCGGGGTSCCCSSSTTSCSEEEEEES
T ss_pred             -eEEEEeCCCcccch-hhcChHHHHHHHHHHHhcCCCCcccChhhheeeeccccchhhhhhhccccccCCCCCEEEEecc
Confidence             78888876544321 0110  13456789999999999876533222 443210     0000 011236788877652


Q ss_pred             C-----------cceeEEEeccCCCCCCCceEEEecC--CCchhH
Q psy760          440 D-----------LIGILIALALPRKFSTWGKFQVSSS--FVVPVW  471 (511)
Q Consensus       440 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~  471 (511)
                      .           .++..+...+.+|+|+ |+++|+|.  ++.|.+
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~P~Sr-G~V~L~s~dp~~~P~i  438 (566)
T 3fim_B          395 QWFHPAIPRPDTGSFMSVTNALISPVAR-GDIKLATSNPFDKPLI  438 (566)
T ss_dssp             SCCCTTSCCCSSCCEEEEEEEESSCSCC-BEEECSSSCTTSCCEE
T ss_pred             cchhhcccCCCCCCEEEEEEeecCCccc-eEEEecCCCCCCCcee
Confidence            1           1246788889999999 99999988  777753

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=4.3e-61  Score=521.64  Aligned_cols=396  Identities=25%  Similarity=0.358  Sum_probs=305.6

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC-C--CcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY-F--NYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~-~--~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      ..+|||||||||.|||++|.||+|+++.+|||||||+. .  .....+|.....+..+.++|.|.++||.      .+++
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~------~~~r   90 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA------TNNQ   90 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT------TTSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC------CCCC
Confidence            45799999999999999999999988999999999983 2  2345566665555678899999999886      4678


Q ss_pred             ccccCCcceecccccccccccccCCcccchHHhhcCCC-CCChhchHHHHHHHHhhhcccc--------cCCCCCCCCcc
Q psy760          144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNY-GWSYNEVLPYFKKAERIQISEL--------QNSSYHGTQGF  214 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~-~w~~~~l~~y~~k~e~~~~~~~--------~~~~~~g~~G~  214 (511)
                      .+.|+|||+|||+|++|+|+|.|+++.||+.|+++|++ +|+|++++|||+|+|++..+..        .+..+|+.+||
T Consensus        91 ~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gp  170 (583)
T 3qvp_A           91 TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGT  170 (583)
T ss_dssp             CCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSS
T ss_pred             eeeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCC
Confidence            89999999999999999999999999999999999887 9999999999999999865421        24568999999


Q ss_pred             cccccC---CCCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccC-CCcccchhHHhhHhhhhCCCcEEEeCceE
Q psy760          215 IGVDYT---EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLH-KRSRRSSAKDYIDPIKKRCNLTVKDSSFV  289 (511)
Q Consensus       215 l~v~~~---~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~-~g~r~~~~~~~L~~~~~r~gv~v~~~t~V  289 (511)
                      +++...   ....+..+.++++++++|++. .|+++....|+.+++.++. .|.|+++..+||.++.+|.|++|++++.|
T Consensus       171 l~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V  250 (583)
T 3qvp_A          171 VHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYV  250 (583)
T ss_dssp             EEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEE
T ss_pred             EEecCCCCcccCCHHHHHHHHHHHHcCCCcCCCCCCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEE
Confidence            999876   344688899999999999997 5889888899998888875 68899999999999888999999999999


Q ss_pred             EEEEEcCC--CCcEEEEEEE-ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCccchhhhhcc
Q psy760          290 KKILIDPV--TKKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHL  366 (511)
Q Consensus       290 ~~I~~d~~--~~ra~GV~~~-~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~PVG~nl~DH~  366 (511)
                      +||+++++  +++|+||++. .+|+.++++|+||||||||+|+||||||+|||||+++|+++||+|++|+|||+|||||+
T Consensus       251 ~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLPVG~NLqDH~  330 (583)
T 3qvp_A          251 GKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQT  330 (583)
T ss_dssp             EEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCCBBCCE
T ss_pred             EEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCccccchhhCc
Confidence            99999842  3799999998 57888899999999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEEEEcCCCCcc--------hhhhhcchHHHHHhHHhcCCCCcccCccccee------eeehhccchhhhhcc-CC
Q psy760          367 AMAGLTFLVNQPIGLL--------QDRLIKEMPVHFAGKLRHSLSPITNSETLSTN------IKTIFAAHHDKINKS-GE  431 (511)
Q Consensus       367 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~------~~~~~~~~~~~~~~~-~~  431 (511)
                      .+ .+.|.++.+....        .............+|+..+.++++.......+      +...+....++.... .+
T Consensus       331 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (583)
T 3qvp_A          331 TA-TVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWIVNHNVA  409 (583)
T ss_dssp             EE-EEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHSCCE
T ss_pred             cc-eEEEEecCCccccccccccccHHHhhccchHHHHHHHHhhcchhhcccccccCccccHHHHhhhccchhhhccCCCC
Confidence            97 7888876532100        00000001223334444443333221000000      111111122222222 23


Q ss_pred             CeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhH
Q psy760          432 DITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVW  471 (511)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~  471 (511)
                      ..++.+.. ..+..+...+.+|+|+ |+++|+|.  ++.|.+
T Consensus       410 ~~~~~~~~-~~~~~~~~~~~~P~Sr-G~v~l~s~dp~~~P~i  449 (583)
T 3qvp_A          410 YSELFLDT-AGVASFDVWDLLPFTR-GYVHILDKDPYLHHFA  449 (583)
T ss_dssp             EEEEEEEC-TTSEEEEEEESSCCCC-BEEEESSSCGGGCCEE
T ss_pred             cceeeecc-CCCceeeeeecccCCc-eEEEecCCCCCCCccc
Confidence            33333321 1223344445899999 99999988  888876

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=5.8e-59  Score=505.12  Aligned_cols=390  Identities=26%  Similarity=0.395  Sum_probs=311.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC---CcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF---NYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~---~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      ..+|||||||||.|||++|.||+|+++.+|||||||+..   .....+|.....+..+.++|.|.++..         ++
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~~---------~r   74 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMV---------RR   74 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEEE---------EE
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEEC---------Cc
Confidence            357999999999999999999999655899999999873   345678888777778899999987733         33


Q ss_pred             ccc------cCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccc---cCCCCCCCCcc
Q psy760          144 RCP------WPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISEL---QNSSYHGTQGF  214 (511)
Q Consensus       144 ~~~------~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~---~~~~~~g~~G~  214 (511)
                      .+.      |+|||+|||+|++|+|+|.|+.+.||+.|+++|+++|+|++++|||+|+|++..+..   .+..+|+.+||
T Consensus        75 ~~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gp  154 (577)
T 3q9t_A           75 DDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGP  154 (577)
T ss_dssp             TTEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCS
T ss_pred             cccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCC
Confidence            444      999999999999999999999999999999999999999999999999999876431   12347899999


Q ss_pred             cccccCCCCC---hHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEE
Q psy760          215 IGVDYTEYNT---PMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK  290 (511)
Q Consensus       215 l~v~~~~~~~---~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~  290 (511)
                      +++.......   +..+.+.++++++|++. .++++....|+.+.+.++..|.|+++. .|+   .+|.|++|++++.|+
T Consensus       155 l~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~g~R~s~~-~~l---~~r~Nl~v~~~a~v~  230 (577)
T 3q9t_A          155 IPISHAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQRSGSF-LFV---KNKPNITIVPEVHSK  230 (577)
T ss_dssp             EEEEECCCCGGGHHHHHHHHHHHHHTTCCBCSCCSSSCCCEEEECEESEETTEECCGG-GGS---SSCTTEEEECSEEEE
T ss_pred             EEeeCCCCCcccchHHHHHHHHHHHcCCCcCCCCCCCCcCeEEeecceecCCeEeeHH-HHH---hcCCCeEEEcCcEEE
Confidence            9998876543   46778889999999998 578888888999888888888888764 343   568899999999999


Q ss_pred             EEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccC
Q psy760          291 KILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAM  368 (511)
Q Consensus       291 ~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~  368 (511)
                      +|++++++++|+||++... |+.++++|+|+||||||+|+||+|||+|||||+++|+++||+|++|+| ||+|||||+.+
T Consensus       231 ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~~  310 (577)
T 3q9t_A          231 RLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGV  310 (577)
T ss_dssp             EEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCEEE
T ss_pred             EEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCcce
Confidence            9999854489999999875 788899999999999999999999999999999999999999999999 99999999998


Q ss_pred             ceEEEEEcCCCCcchhhhhc--chHHHHHhHHhcCCCCcccCccccee-eeehhcc--------------chhh-hhccC
Q psy760          369 AGLTFLVNQPIGLLQDRLIK--EMPVHFAGKLRHSLSPITNSETLSTN-IKTIFAA--------------HHDK-INKSG  430 (511)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~~~~~--------------~~~~-~~~~~  430 (511)
                       .+.+.++++.+.......+  ....++.+|...++||++.......+ .+.....              ..+. .....
T Consensus       311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (577)
T 3q9t_A          311 -PFVLRVKDGFGMDDVLLRHGPKRDAVVSAYNKNRSGPVGSGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQ  389 (577)
T ss_dssp             -EEEEEECTTSSSHHHHTSCSHHHHHHHHHHHHHSCSGGGCCSEEEEEECCCHHHHTTCHHHHHHHHHTTTSCSSCTTSC
T ss_pred             -eEEEEeCCCCccchhhhcchhHHHHHHHHHHhcCCCCcccchhheeEEeecChhhhcchhhhhhhhccccccccCCCCC
Confidence             7889887765432211111  14567889999999999854322222 2221100              0001 12336


Q ss_pred             CCeEEEEecC--------------cceeEEEeccCCCCCCCc-eEEEecC--CCchhH
Q psy760          431 EDITIRLIKD--------------LIGILIALALPRKFSTWG-KFQVSSS--FVVPVW  471 (511)
Q Consensus       431 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~~  471 (511)
                      +++++.|.+.              .....+...+.+|+|+ | +++|+|.  ++.|.+
T Consensus       390 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~Sr-GG~V~L~S~dp~~~P~i  446 (577)
T 3q9t_A          390 PHFELDFVCMFGTAFQWHFPTPKTGDHLTVVVDLVRPISD-PGEVTLNSADPFQQPNI  446 (577)
T ss_dssp             CSEEEEEESSCCGGGCSSSCCCSSSEEEEEEEEESSCCSC-CEEEECSCSCTTSCCEE
T ss_pred             ceEEEEecccccccccccccCCCCCCEEEEEEEeeecccc-CCEEEeCCCCCCCCceE
Confidence            8888877531              1236778889999999 8 9999998  777753

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=8.1e-54  Score=467.42  Aligned_cols=390  Identities=24%  Similarity=0.357  Sum_probs=303.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC--cccc-cccccccccCCCCcCCCccccccccccccCCCCc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN--YLVD-IPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQR  144 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~--~~~~-ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  144 (511)
                      .+|||||||+|.+|+++|.+|++++|.+|+|||+|....  .... +|.....+..+.++|.|.++|       +++++.
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p-------~~~~~~   95 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP-------LINNRT   95 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC-------CTTSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc-------CCCCce
Confidence            579999999999999999999997799999999998653  2334 776655555567899998877       246788


Q ss_pred             cccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccc--------cCCCCCCCCccc
Q psy760          145 CPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISEL--------QNSSYHGTQGFI  215 (511)
Q Consensus       145 ~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~--------~~~~~~g~~G~l  215 (511)
                      +.|+|||+|||+|.+|+|+|.|+.+.||+.|++. |+++|+|++++|||+|+|++..+..        .++.+|+.+||+
T Consensus        96 ~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl  175 (587)
T 1gpe_A           96 NNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTV  175 (587)
T ss_dssp             CEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSE
T ss_pred             eeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCE
Confidence            9999999999999999999999999999999998 9999999999999999999876421        245688999999


Q ss_pred             ccccC---CCCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccC-CCcccchhHHhhHhhhhCCCcEEEeCceEE
Q psy760          216 GVDYT---EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLH-KRSRRSSAKDYIDPIKKRCNLTVKDSSFVK  290 (511)
Q Consensus       216 ~v~~~---~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~-~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~  290 (511)
                      +++++   ....+..+.+.++++++|++. .++++....|+++++.++. .+.|+++..+||.+++++.|++|++++.|+
T Consensus       176 ~v~~~~~~~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~  255 (587)
T 1gpe_A          176 QSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVG  255 (587)
T ss_dssp             EEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEE
T ss_pred             EEccCCCcCCCCHHHHHHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEE
Confidence            99865   356788999999999999998 5788888888888877664 688999999999888888999999999999


Q ss_pred             EEEEcCCC--CcEEEEEEE-ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCccchhhhhccc
Q psy760          291 KILIDPVT--KKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLA  367 (511)
Q Consensus       291 ~I~~d~~~--~ra~GV~~~-~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~PVG~nl~DH~~  367 (511)
                      +|++++++  ++|+||++. .+++.++++|+|+||||||+++||+||++|||||+++|+++||+|++|+|||+|||||+.
T Consensus       256 ~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlPVG~nL~DH~~  335 (587)
T 1gpe_A          256 KVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTT  335 (587)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCSBBCCEE
T ss_pred             EEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCCCCcchhcCcc
Confidence            99997532  489999998 678888999977999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEcCCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee-eeehh-----c--c--chh------hh-hccC
Q psy760          368 MAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN-IKTIF-----A--A--HHD------KI-NKSG  430 (511)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~~~-----~--~--~~~------~~-~~~~  430 (511)
                      . .+.+.++++.........  ....+.+|...++||++..+..... .+...     .  .  ..+      .+ ....
T Consensus       336 ~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (587)
T 1gpe_A          336 T-TVSSRASSAGAGQGQAVF--FANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDV  412 (587)
T ss_dssp             E-EEEEEECGGGCSBCEEEE--EEEHHHHHGGGHHHHHHHHHHSHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHSCC
T ss_pred             c-ceEEEeCCCcccccchHH--HHHHHHHHHhCCCCCccccccceeeEeecccccccccccccccccHHHHhhhccCCCC
Confidence            7 788877654322110000  1223455665666776532211111 11100     0  0  000      00 1112


Q ss_pred             CCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCch
Q psy760          431 EDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVP  469 (511)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p  469 (511)
                      +..+..+... .+..+...+++|+|+ |++++++.  ++.|
T Consensus       413 ~~~~~~~~~~-~~~~~~~~~~~P~sr-G~V~L~s~dp~~~P  451 (587)
T 1gpe_A          413 AFAELFMDTE-GKINFDLWDLIPFTR-GSVHILSSDPYLWQ  451 (587)
T ss_dssp             EEEEEEEECT-TEEEEEEEESSCCCC-BEEEESSSCGGGTC
T ss_pred             cceeeeecCC-CcEEEEEEecCCccc-eeEEeCCCCcccCc
Confidence            2233333222 346677788999999 99999887  7777

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=2.2e-50  Score=435.41  Aligned_cols=291  Identities=29%  Similarity=0.535  Sum_probs=255.8

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC-cccccccccccccCCCCcCCCccccccccccccCCCCcc
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN-YLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRC  145 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~-~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~  145 (511)
                      ..+|||||||||+|||++|.||||+++++|||||||+... .....|.....+..+.++|.|.++||.     .++++.+
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~-----~~~~~~~   89 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQA-----GTAGRAH   89 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBG-----GGTTBCC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccC-----CCCCCeE
Confidence            3589999999999999999999998899999999998653 445677777777888999999999998     7889999


Q ss_pred             ccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCC-CC
Q psy760          146 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTE-YN  223 (511)
Q Consensus       146 ~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~-~~  223 (511)
                      .|+||++|||+|.+|+|.|.|+.+.||+.|++. ++.+|+|++++|||++.|+....   ....++..|++.+.... ..
T Consensus        90 ~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~---~~~~~~~~g~~~~~~~~~~~  166 (526)
T 3t37_A           90 HWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG---GDGIHGKGGPLPIHLPADEV  166 (526)
T ss_dssp             EECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTT---TSSSSCSSCSEECBCCSTTS
T ss_pred             eccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCC---CccccCcCCCcCcccccccC
Confidence            999999999999999999999999999999875 88999999999999999987654   23467777887776543 45


Q ss_pred             ChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhh-hhCCCcEEEeCceEEEEEEcCCCCcE
Q psy760          224 TPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPI-KKRCNLTVKDSSFVKKILIDPVTKKA  301 (511)
Q Consensus       224 ~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~-~~r~gv~v~~~t~V~~I~~d~~~~ra  301 (511)
                      .+..+.+.++++++|++. .+.+.....+...+...+..+.+.++...++.+. ..+.|++|++++.|++|++++  +++
T Consensus       167 ~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~~--~~a  244 (526)
T 3t37_A          167 SPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLEG--NQV  244 (526)
T ss_dssp             CHHHHHHHHHHHHTTCCBCSSSCSSCCBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEET--TEE
T ss_pred             CHHHHHHHHHHHHcCCCcccCCCCCcccccccccccccCCcccccccccccccccCCCCeEEEeCCEEEEEEecC--CeE
Confidence            688899999999999987 4666777777777777788888888888888654 468899999999999999987  799


Q ss_pred             EEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccC
Q psy760          302 CGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAM  368 (511)
Q Consensus       302 ~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~  368 (511)
                      +||++...++...+.|+ +||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+..
T Consensus       245 ~gv~~~~~~~~~~~~a~-~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~  311 (526)
T 3t37_A          245 RSLEVVGRQGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLG  311 (526)
T ss_dssp             EEEEEEETTEEEEEEEE-EEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEE
T ss_pred             EEEEEEecCceEEEeec-ceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCcccccccccccc
Confidence            99999988888888885 89999999999999999999999999999999999999 99999999975

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=4.6e-49  Score=426.77  Aligned_cols=302  Identities=32%  Similarity=0.477  Sum_probs=265.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC--cccccccccccccCCCCcCCCccccccccccccCCCCcc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN--YLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRC  145 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~--~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~  145 (511)
                      .+|||||||+|.+|+++|.+|++++|.+|+|||+|+...  ....+|........+.++|.|.+.|+.     . +++.+
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~-----~-~~~~~   85 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQE-----N-GNSFM   85 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCS-----S-SCTTC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccC-----C-CCceE
Confidence            479999999999999999999995599999999997654  234566554333356789999999988     4 77889


Q ss_pred             ccCCcceecccccccccccccCCcccchHHhh-cCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCC
Q psy760          146 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNT  224 (511)
Q Consensus       146 ~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~  224 (511)
                      .|+|||+|||+|.+|+|.|.|+.+.||+.|++ .|+++|+|++++|||+++|++..+.. +..+|+..|++.+..+....
T Consensus        86 ~~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~-~~~~~g~~Gpl~v~~~~~~~  164 (546)
T 2jbv_A           86 RHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP-DAPHHGDSGPVHLMNVPPKD  164 (546)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBT-TBTTSCBSCSEEEEECCSCC
T ss_pred             EeecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCC-ccccCCCCCCEEEecCCCCC
Confidence            99999999999999999999999999999998 79999999999999999999876321 14588889999998777788


Q ss_pred             hHHHHHHHHHHHcCCCCCCCCCCC--ccceeecccccC-CCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcE
Q psy760          225 PMLDAFLQAGMEAGYPLVDYNGKT--QTGFARAQATLH-KRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKA  301 (511)
Q Consensus       225 ~~~~~~~~a~~~~G~~~~~~~~~~--~~G~~~~~~~~~-~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra  301 (511)
                      +..+.+.++++++|++..++++..  ..|+.+++.++. .+.|+++..+||.++.++.|++|++++.|++|+++++ +++
T Consensus       165 ~~~~~~~~a~~~~G~~~~d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~-~~~  243 (546)
T 2jbv_A          165 PTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDAD-RRC  243 (546)
T ss_dssp             HHHHHHHHHHHHTTCCBCCSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTT-SBE
T ss_pred             HHHHHHHHHHHHCCCCccCCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCC-CeE
Confidence            999999999999999987777766  788888888887 8899999999998877789999999999999999763 689


Q ss_pred             EEEEEEEC--CeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCC
Q psy760          302 CGVLATIK--GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQP  378 (511)
Q Consensus       302 ~GV~~~~~--g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~  378 (511)
                      +||++...  ++..+++|+|+||||||+++||+||++|||||+++|+++||+++.|+| ||+|||||+.. .+.+.++++
T Consensus       244 ~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~-~~~~~~~~~  322 (546)
T 2jbv_A          244 TGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEG-VVQFEAKQP  322 (546)
T ss_dssp             EEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEC-CEEEEESSC
T ss_pred             EEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccc-eEEEEecCC
Confidence            99999865  777789998799999999999999999999999999999999999999 99999999998 688877654

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=100.00  E-value=2.6e-42  Score=372.97  Aligned_cols=278  Identities=30%  Similarity=0.402  Sum_probs=209.4

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC--cccccccccc-cccCCCCcCCCccccccccccccCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN--YLVDIPVLNT-NLILSPLNWGYKTEKEDCRACLGLKG  142 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~--~~~~ip~~~~-~~~~~~~~w~~~t~p~~~~~~~~~~~  142 (511)
                      +..+|||||||||+|||++|.+|+|  |.+|||||||+...  .....|.... ....  .+| |.+.||.     ...+
T Consensus        23 ~~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~--~~~-~~t~~q~-----~~~~   92 (536)
T 1ju2_A           23 LEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQ--EDD-GKTPVER-----FVSE   92 (536)
T ss_dssp             SEEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHHS--CCC-SSSSEEE-----EECT
T ss_pred             ccCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhccC--CCc-CcCCCcc-----ccCC
Confidence            3457999999999999999999999  89999999998642  2223332221 1111  235 6677776     4566


Q ss_pred             CccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCC
Q psy760          143 QRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY  222 (511)
Q Consensus       143 ~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~  222 (511)
                      +...+++|++|||+|.+|+|.|.|+.+.||+.+   | .+|.|+++.|||+++|+.....                  +.
T Consensus        93 ~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~~~~------------------~~  150 (536)
T 1ju2_A           93 DGIDNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTIVYK------------------PN  150 (536)
T ss_dssp             TSCEEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHHCBC------------------CC
T ss_pred             CcceeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcccCCC------------------CC
Confidence            778899999999999999999999999999742   2 2599999999999999864320                  12


Q ss_pred             CChHHHHHHHHHHHcCCCCC-CCCCCCccceeecccc-cCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCC-CC
Q psy760          223 NTPMLDAFLQAGMEAGYPLV-DYNGKTQTGFARAQAT-LHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPV-TK  299 (511)
Q Consensus       223 ~~~~~~~~~~a~~~~G~~~~-~~~~~~~~G~~~~~~~-~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~-~~  299 (511)
                      ..+....+.++++++|++.. ..+.....|....... ...|.|+++.. ++. .+++.|++|++++.|++|+++++ ++
T Consensus       151 ~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~g~~~~~~~g~r~s~~~-~~~-~~~~~~~~v~~~~~v~~i~~~~~~~~  228 (536)
T 1ju2_A          151 SQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADE-LLN-KGNSNNLRVGVHASVEKIIFSNAPGL  228 (536)
T ss_dssp             CCHHHHHHHHHHHHTTCCCEEEECCBCCSEEEECEESBCTTSBBCCGGG-GGG-GSCTTTEEEEESCEEEEEEECCSSSC
T ss_pred             CCcHHHHHHHHHHHcCCCCCCCcccCCCCCceeeeEEECCCCeEecHHH-hhh-hhcCCCcEEEeCCEEEEEEECCCCCC
Confidence            34667788899999998642 1111111111110011 14577777766 664 46789999999999999999863 25


Q ss_pred             cEEEEEEEE-CCeEEEEE--eCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEE
Q psy760          300 KACGVLATI-KGIDHKIL--ARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLV  375 (511)
Q Consensus       300 ra~GV~~~~-~g~~~~v~--A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~  375 (511)
                      +++||++.. +++.++++  +.|+||||||+++||+||++|||||+++|+++||+++.|+| ||+|||||+.. .+.+.+
T Consensus       229 ~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~-~~~~~~  307 (536)
T 1ju2_A          229 TATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRN-FINILP  307 (536)
T ss_dssp             BEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEE-EEEECC
T ss_pred             EEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCcce-eEEEEe
Confidence            899999985 56655564  66799999999999999999999999999999999999999 99999999987 676665


Q ss_pred             cCC
Q psy760          376 NQP  378 (511)
Q Consensus       376 ~~~  378 (511)
                      +.+
T Consensus       308 ~~~  310 (536)
T 1ju2_A          308 PNP  310 (536)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=100.00  E-value=1.3e-38  Score=345.23  Aligned_cols=358  Identities=25%  Similarity=0.319  Sum_probs=245.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCccc-----------------ccccccccccCCCCcCCCcc
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV-----------------DIPVLNTNLILSPLNWGYKT  129 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~-----------------~ip~~~~~~~~~~~~w~~~t  129 (511)
                      ..+|||||||||++|+++|.+|++ .|.+|+|||+|+......                 .+|+.....      |.   
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~-~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~---   74 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESL------FT---   74 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGG------GT---
T ss_pred             CCceeEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHh------hc---
Confidence            357999999999999999999999 799999999997543110                 111110000      00   


Q ss_pred             ccccccccccCCCCccccCCcceecccccccccccccCCcccchH---HhhcCCCCCChhchHHHHHHHHhhhcccccCC
Q psy760          130 EKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDD---WAKLGNYGWSYNEVLPYFKKAERIQISELQNS  206 (511)
Q Consensus       130 ~p~~~~~~~~~~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~---w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~  206 (511)
                      .+..     ........+++|+++||+|.+|+|++.|+.+.||+.   |    ..+|+|++  |||++.|......    
T Consensus        75 ~~~~-----~~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~~~~~----  139 (546)
T 1kdg_A           75 DSNP-----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSRLPST----  139 (546)
T ss_dssp             CSCC-----TTBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHHSCCB----
T ss_pred             CCCc-----cccccccccccceeecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHhcCCCC----
Confidence            0000     000123567899999999999999999999999988   8    35788888  9999999865421    


Q ss_pred             CCCCCCcccccccCCCCChHHHHHHHHHHHcCCCCCCCC-C--CCccceeecccccCCCcccchhHHhhHhhhhCCCcEE
Q psy760          207 SYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN-G--KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTV  283 (511)
Q Consensus       207 ~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~-~--~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v  283 (511)
                      ..+...|+      .+..+....+.++++++|++..+.+ .  ....|+..++.++.++.|+++..+|+.++.++.|++|
T Consensus       140 ~~~~~~g~------~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~~~~~~~~~i  213 (546)
T 1kdg_A          140 DHPSTDGQ------RYLEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTF  213 (546)
T ss_dssp             SCCSTTSC------CCSCHHHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEE
T ss_pred             ccCCCCCC------ccCCHHHHHHHHHHHHCCCCcCCccCCcCCCCcEEeeeeeccCCCcccCHHHHHHHHHhhCCCcEE
Confidence            12222232      1345667888899999998754322 1  2345667777777788899988889988777889999


Q ss_pred             EeCceEEEEEEcCCCCcEEEEEEEE--CCe--EEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccC------CCCcc
Q psy760          284 KDSSFVKKILIDPVTKKACGVLATI--KGI--DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL------NIPVI  353 (511)
Q Consensus       284 ~~~t~V~~I~~d~~~~ra~GV~~~~--~g~--~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~------gi~vv  353 (511)
                      ++++.|++|++++  ++++||++..  +|+  +.++.+.|+||||||+++||+||++|||||+++|+++      ||+|+
T Consensus       214 ~~~~~V~~i~~~~--~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~  291 (546)
T 1kdg_A          214 KTNVMVSNVVRNG--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALP  291 (546)
T ss_dssp             ECSCCEEEEEEET--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSC
T ss_pred             EeCCEEEEEEEeC--CEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccc
Confidence            9999999999986  7999999875  353  3345455799999999999999999999999999999      69885


Q ss_pred             -----ccCccchhhhhcccCceEEEEEcCCC-Ccchh-h-hhcchHHHHHhHHhcCCCCcccCcccceeeeehhccchhh
Q psy760          354 -----KNLRVGENLQEHLAMAGLTFLVNQPI-GLLQD-R-LIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDK  425 (511)
Q Consensus       354 -----~~~PVG~nl~DH~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~~~~~~~~~~~~  425 (511)
                           .|+|||+|||||+.. .+.+. .+.. ..... . ..........+|+..++||++........++.....    
T Consensus       292 ~~~~~~dlpVG~nL~DH~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----  365 (546)
T 1kdg_A          292 PQNQWINLPVGMNAQDNPSI-NLVFT-HPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSGS----  365 (546)
T ss_dssp             CGGGCBCCCTTTTBBCCCCE-EEEEE-CTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCSCCEEEEEEEECT----
T ss_pred             cccccccCCcccCcccCcce-eEEEe-cCCcccccchhhhhcchhHHHHHHHHHcCCcccccCCcceEEEEccCCC----
Confidence                 799999999999987 67776 3322 11100 0 111123456788888999987643222222211000    


Q ss_pred             hhccCCCeEEEEec------------CcceeEEEeccCCC-CCCCceEEEecC
Q psy760          426 INKSGEDITIRLIK------------DLIGILIALALPRK-FSTWGKFQVSSS  465 (511)
Q Consensus       426 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~-~~~~~~~~~~~~  465 (511)
                       ......++..+.+            ......+...+.+| +|+ |++++++.
T Consensus       366 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~sr-G~v~L~s~  416 (546)
T 1kdg_A          366 -DGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLSTGIQSR-GRIGIDAA  416 (546)
T ss_dssp             -TSCEEEEEEEEEESCSCCCCSSCCCGGGEEEEEEEECTTCCCC-BEEEECTT
T ss_pred             -CcchhhhhheecccccccccccccCCCCeEEEEeeecCCCCCC-ceEecCCC
Confidence             0000112221211            01245676777888 888 99999886

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=100.00  E-value=5.6e-38  Score=336.95  Aligned_cols=275  Identities=20%  Similarity=0.202  Sum_probs=207.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC---cccccccccccccCCCCcCCCccccccc----------
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN---YLVDIPVLNTNLILSPLNWGYKTEKEDC----------  134 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~---~~~~ip~~~~~~~~~~~~w~~~t~p~~~----------  134 (511)
                      .+||+||||+|++|+++|.+|++ .|.+|+|||+|....   .....+... ......++|.|.++|+..          
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~   81 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVN   81 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccccccccccccccc
Confidence            46999999999999999999999 899999999998533   111222211 122335789999887610          


Q ss_pred             ---ccccc----CCCCccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchH-HHHHHHHhhhcccccCC
Q psy760          135 ---RACLG----LKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVL-PYFKKAERIQISELQNS  206 (511)
Q Consensus       135 ---~~~~~----~~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~-~y~~k~e~~~~~~~~~~  206 (511)
                         ..+.+    .+++.+.|+|||+|||+|.+|+|+|.|+.+.||+.|.    ++|.|++++ |||+++|++..+.....
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~~~  157 (504)
T 1n4w_A           82 RNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHIDT  157 (504)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCCCH
T ss_pred             ccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCCCCCCc
Confidence               01111    1577889999999999999999999999999999996    689999999 99999999875422110


Q ss_pred             CCCCCCcccccccCCCCChHHHHHHHHHHHcCC-----CC-CCCCCCC---------ccceeecccccCCCcccchhHHh
Q psy760          207 SYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY-----PL-VDYNGKT---------QTGFARAQATLHKRSRRSSAKDY  271 (511)
Q Consensus       207 ~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~-----~~-~~~~~~~---------~~G~~~~~~~~~~g~r~~~~~~~  271 (511)
                             ..+ ...+ ..+..+.+.++++++|+     +. .++++..         ...+..|...|..| |.++..+|
T Consensus       158 -------~~~-~~~~-~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~  227 (504)
T 1n4w_A          158 -------KWF-EDTE-WYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTY  227 (504)
T ss_dssp             -------HHH-HHCG-GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTH
T ss_pred             -------ccc-cCCC-cchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccCCcccccccccCCCC-ccCHHHHH
Confidence                   111 0001 24677889999999999     43 2333211         12222334456788 99999999


Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CC---eEEEEEeCcEEEEccCCCCcHHHHHhcC-CCCccccc
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KG---IDHKILARKEVILSAGAFNSPKLLMLSG-IGPQEHLN  346 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g---~~~~v~A~k~VILAAGa~~SP~LL~~SG-IGp~~~L~  346 (511)
                      +.++.++.|++|++++.|++|++++++++++||++.. ++   +..+++|+ +||||||+++||+||++|| ||      
T Consensus       228 l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~-~VIlaaG~~~s~~lL~~Sg~ig------  300 (504)
T 1n4w_A          228 LAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRARDTG------  300 (504)
T ss_dssp             HHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHTT------
T ss_pred             HHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeC-EEEEccCCCCCHHHHHhccccC------
Confidence            9887777789999999999999986435899999974 55   56689996 8999999999999999999 98      


Q ss_pred             cCCCCccccCccchhhhhcccC
Q psy760          347 DLNIPVIKNLRVGENLQEHLAM  368 (511)
Q Consensus       347 ~~gi~vv~~~PVG~nl~DH~~~  368 (511)
                        ||+++.+ .||+||+||+..
T Consensus       301 --~i~~~~~-~VG~nl~dh~~~  319 (504)
T 1n4w_A          301 --TLPNLNS-EVGAGWGPNGNI  319 (504)
T ss_dssp             --SSTTCCT-TTTCCBBCTTCE
T ss_pred             --CCCCCCh-hhccccccCCcc
Confidence              6776533 399999999976

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=100.00  E-value=1.9e-36  Score=325.28  Aligned_cols=273  Identities=18%  Similarity=0.175  Sum_probs=206.3

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCccccccc---ccccc-cCCCCcCCCccccccccc-----
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPV---LNTNL-ILSPLNWGYKTEKEDCRA-----  136 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~---~~~~~-~~~~~~w~~~t~p~~~~~-----  136 (511)
                      +..+||+||||+|.+|+++|.+|++ +|.+|+|||+|....  ..+|.   +.... ....++|.|.++||. +.     
T Consensus         8 ~~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~--~~~p~~~~~~~~~~~~~~~~w~~~~~pq~-~~~~~~~   83 (507)
T 1coy_A            8 DGDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWD--TPGSDGKIFCGMLNPDKRSMWLADKTDQP-VSNFMGF   83 (507)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSC--SCCTTSCSSCCSSSCCTTSBBSCSBCCCS-SCSBTTB
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCCC--CCCCccccccccccccccccccccccccc-ccccccc
Confidence            3467999999999999999999999 899999999997543  12332   11111 234689999998872 10     


Q ss_pred             ------cccC------CCCccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchH-HHHHHHHhhhcccc
Q psy760          137 ------CLGL------KGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVL-PYFKKAERIQISEL  203 (511)
Q Consensus       137 ------~~~~------~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~-~y~~k~e~~~~~~~  203 (511)
                            +...      +++.+.|+||++|||+|.+|+|+|.|+.+.||+.|.    ++|.|++++ |||+++|++..+..
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~  159 (507)
T 1coy_A           84 GINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVNN  159 (507)
T ss_dssp             SCCCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBC
T ss_pred             ccccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCCCC
Confidence                  1122      567889999999999999999999999999999995    479999999 99999999876521


Q ss_pred             cCCCCCCCCcccccccCCCCChHHHHHHHHHHHcCC-----CCC-CCCCCC---------ccceeecccccCCCcccchh
Q psy760          204 QNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY-----PLV-DYNGKT---------QTGFARAQATLHKRSRRSSA  268 (511)
Q Consensus       204 ~~~~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~-----~~~-~~~~~~---------~~G~~~~~~~~~~g~r~~~~  268 (511)
                      ..       ....  ......+..+.+.++++++|+     +.. ++++..         ...+..|...|..| |+++.
T Consensus       160 ~~-------~~~~--~~~~~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~  229 (507)
T 1coy_A          160 ID-------QAWF--ESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLD  229 (507)
T ss_dssp             CC-------HHHH--HHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTT
T ss_pred             CC-------Cccc--cccccchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccCccccccccccCCCC-CcChH
Confidence            10       0000  000124677889999999999     442 333211         11222333456778 99999


Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CC---eEEEEEeCcEEEEccCCCCcHHHHHhcC-CCCcc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KG---IDHKILARKEVILSAGAFNSPKLLMLSG-IGPQE  343 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g---~~~~v~A~k~VILAAGa~~SP~LL~~SG-IGp~~  343 (511)
                      .+||.++.++.|++|++++.|++|++++++++++||++.. ++   +.++++|+ +||||||+++||+||++|| ||.  
T Consensus       230 ~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~-~VIlaaGa~~sp~lL~~Sg~iG~--  306 (507)
T 1coy_A          230 KTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSMKAQGH--  306 (507)
T ss_dssp             TTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeC-EEEEccCccCCHHHHHhcccCCC--
Confidence            9999888778889999999999999986424899999975 55   35689996 8999999999999999999 982  


Q ss_pred             ccccCCCCccccC-c-cchhhhhcccC
Q psy760          344 HLNDLNIPVIKNL-R-VGENLQEHLAM  368 (511)
Q Consensus       344 ~L~~~gi~vv~~~-P-VG~nl~DH~~~  368 (511)
                            +|   ++ + ||+||+||+..
T Consensus       307 ------lp---nl~d~VG~~l~~h~~~  324 (507)
T 1coy_A          307 ------LP---NLSSQVGEGWGNNGNI  324 (507)
T ss_dssp             ------ST---TSCTTTTCCBBCTTEE
T ss_pred             ------CC---ccChhhCCccccCCcc
Confidence                  33   33 3 99999999864

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.91  E-value=1.2e-23  Score=230.48  Aligned_cols=285  Identities=20%  Similarity=0.181  Sum_probs=169.8

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCccccccccccc-----------------ccC-------
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTN-----------------LIL-------  120 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~-----------------~~~-------  120 (511)
                      .|..+|||||||||.+|+++|..|++ .|++|+|||+++.......-+.....                 ...       
T Consensus        42 ~~~~~~dvvIIG~G~aGl~aA~~l~~-~G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~  120 (623)
T 3pl8_A           42 GMDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNT  120 (623)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCC
T ss_pred             cccccCCEEEECCcHHHHHHHHHHHh-CCCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhccccccc
Confidence            34457999999999999999999999 89999999998755421100000000                 000       


Q ss_pred             ------CCCcCCCccccccccccccCCCCcccc----CCcceecccccccccccccCCcccchHHhhcCCCCC-ChhchH
Q psy760          121 ------SPLNWGYKTEKEDCRACLGLKGQRCPW----PSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW-SYNEVL  189 (511)
Q Consensus       121 ------~~~~w~~~t~p~~~~~~~~~~~~~~~~----~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w-~~~~l~  189 (511)
                            ...+|.-....-. ..+.. .......    ..+..+||.+.++.+...|..+.+  .+....+.++ .+.++.
T Consensus       121 ~~~~~~~~~~~~~~~v~l~-~g~~~-~~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e--~~~~l~~~~v~~~~~l~  196 (623)
T 3pl8_A          121 LVVDTLSPTSWQASTFFVR-NGSNP-EQDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQ--RPLLVKDDADADDAEWD  196 (623)
T ss_dssp             CCCCCSCTTSCCCSSCCSC-TTCCT-TCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGG--SCCSSTTCHHHHHHHHH
T ss_pred             cccccccccccccCcEEec-cCCCc-ccccchhhhhhcccccccCcceeeccccccCChHH--hhhhhcccCccChhhHH
Confidence                  0001111000000 00000 0000111    245567888888888777766542  1111111111 346678


Q ss_pred             HHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHH-HHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchh
Q psy760          190 PYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD-AFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSA  268 (511)
Q Consensus       190 ~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~-~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~  268 (511)
                      ++|.+.+.......         +.       +..+... .....+.........+.. ........   -....|+++.
T Consensus       197 ~~~~~~~~l~~vgg---------~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~-~p~a~~~~---~~~~~r~s~~  256 (623)
T 3pl8_A          197 RLYTKAESYFQTGT---------DQ-------FKESIRHNLVLNKLTEEYKGQRDFQQ-IPLAATRR---SPTFVEWSSA  256 (623)
T ss_dssp             HHHHHHHHHHTEES---------CT-------TTTCHHHHHHHHHHHHHTTTTSCCEE-CCEEEEEE---ETTEEEECCH
T ss_pred             HHHHHHHHhccccc---------cc-------ccCccccccchHHHHHhhhhcccccc-cchhhccC---CCCccccchH
Confidence            88888877654311         00       1111111 111122211110000000 00000000   0112256666


Q ss_pred             HHhhHhh------hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          269 KDYIDPI------KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       269 ~~~L~~~------~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      .+++.+.      .++.|++|++++.|++|++++++++++||++.+  +|+..++.|+ +||||+|++.+|++|++||||
T Consensus       257 ~~~l~~~~~l~~~~~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~-~VIlaaG~~~s~~lL~~sgiG  335 (623)
T 3pl8_A          257 NTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGFG  335 (623)
T ss_dssp             HHHCCCCCEEETTEEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEE-EEEECSCTTHHHHHHHTTTSS
T ss_pred             HhhhhhhhcchhhccCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECC-EEEEcCCCcCCHHHHHhcCCC
Confidence            7777665      556799999999999999986446999999986  5777789996 899999999999999999999


Q ss_pred             CccccccCCCCccccCc-cchhhhhcccCceEEEEEcCC
Q psy760          341 PQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQP  378 (511)
Q Consensus       341 p~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~  378 (511)
                      |+.+|+.+||++  ++| ||+||+||+.. .+.+.++++
T Consensus       336 ~~~~l~~~~i~~--~l~~vG~nl~dh~~~-~~~~~~~~~  371 (623)
T 3pl8_A          336 QLGRPNPANPPE--LLPSLGSYITEQSLV-FCQTVMSTE  371 (623)
T ss_dssp             CCSSCCTTSCCS--SCTTTTBSCBCCCEE-EEEEEECHH
T ss_pred             ccccccccCCCC--CCcccccchhhCcCc-eEEEEECCc
Confidence            999999999998  999 99999999997 788877653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.69  E-value=1e-18  Score=182.66  Aligned_cols=202  Identities=15%  Similarity=0.141  Sum_probs=122.9

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccc
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN  346 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~  346 (511)
                      .....|...+++.|++|+++++|++|..+++     ++.+...+.  +++|+ .||+|+|+...|++- ..|.|. ..++
T Consensus       133 ~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~-----~~~V~~~~g--~i~ad-~VIlAtG~~S~p~~g-s~g~g~-~la~  202 (417)
T 3v76_A          133 DIIRMLMAEMKEAGVQLRLETSIGEVERTAS-----GFRVTTSAG--TVDAA-SLVVASGGKSIPKMG-ATGLAY-RIAE  202 (417)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEEETT-----EEEEEETTE--EEEES-EEEECCCCSSCGGGT-CCCHHH-HHHH
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEeCC-----EEEEEECCc--EEEee-EEEECCCCccCCCCC-CCcHHH-HHHH
Confidence            3444565566678999999999999988763     355554444  68997 699999998766421 111111 1145


Q ss_pred             cCCCCccccCc--cchhhhhcc---c--CceEEEEEcCCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee---ee
Q psy760          347 DLNIPVIKNLR--VGENLQEHL---A--MAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IK  416 (511)
Q Consensus       347 ~~gi~vv~~~P--VG~nl~DH~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~  416 (511)
                      .+|++++...|  |+..+.+|.   .  +.++...+.    .....             ....|++..+|++.+|   ++
T Consensus       203 ~~G~~i~~~~p~l~~~~~~~~~~~~~~~l~G~~~~~~----~~~~~-------------~~~~~~~lft~~G~sGp~il~  265 (417)
T 3v76_A          203 QFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADAE----ARFGK-------------AAFREAVLITHRGLSGPAILQ  265 (417)
T ss_dssp             HTTCCEEEEEEESCCEECCHHHHHHTGGGTTCEEEEE----EEETT-------------EEEEEEEEECSSEEESHHHHH
T ss_pred             HCCCCEecccceeeeEEecCccccccccCCCCceeEE----EEECC-------------EeeeeeeEEECCCcchHHHHH
Confidence            67777766556  665555411   1  012222111    11111             1235688899999887   55


Q ss_pred             ehhccchhhhhccCCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhHHH---HHhhccccccccceeee-
Q psy760          417 TIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVWFW---LVQNGCQMSGKWSNLYW-  490 (511)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~---~~~~~~~~~~~~~~~~~-  490 (511)
                      +|.+..      .+..+.|+|.++.+.   .+.+.+.+.+.+++++.+.  ..+|.|+|   +.+.++ .+++|+++-. 
T Consensus       266 ~S~~~~------~~~~~~id~~p~~~~---~~~~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~-~~~~~~~~~~~  335 (417)
T 3v76_A          266 ISSYWR------EGEEIVLRLMPDIDI---ASILKGMRRANGRQAVQTALADILPRRLAQFFADEAKL-TGRMLADLSDK  335 (417)
T ss_dssp             HTTTCC------TTCCEEEEESTTSCH---HHHHHHHHHHTCSSBHHHHHTTTSCHHHHHHHHHHTTC-TTCBGGGCCHH
T ss_pred             HHHHhh------CCCEEEEECCCCCCH---HHHHHHHHHhchhhhHHHHHHHHhhHHHHHHHHHhcCC-CCCchhhCCHH
Confidence            553221      246799999988652   2345555555677777666  56999999   667788 8899998743 


Q ss_pred             -------eecceEEeccccccC
Q psy760          491 -------YTDGFEVDLSGSFGL  505 (511)
Q Consensus       491 -------~~~~~~~~~~~~~~~  505 (511)
                             .-..+++.+.|.-|+
T Consensus       336 ~~~~l~~~l~~~~~~~~g~~~~  357 (417)
T 3v76_A          336 TIDALASSIQVWAVKPAGSEGY  357 (417)
T ss_dssp             HHHHHHHHHHSEEECCCEECCT
T ss_pred             HHHHHHHHhcCCEEEecccCCc
Confidence                   223455555555443

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.66  E-value=1.3e-15  Score=163.39  Aligned_cols=69  Identities=17%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCC-cHHHHHh
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFN-SPKLLML  336 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~-SP~LL~~  336 (511)
                      .....|...+++.|++|+++++|++|+.+++ ++|+||++..+++..+|+|+|.||||+|++. ++.++..
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~-g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~~  272 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDT-GRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIEA  272 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTT-CCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCC-CcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHHH
Confidence            3445565666778999999999999999843 7999999988888778999668999999998 5555543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.57  E-value=1.5e-16  Score=165.43  Aligned_cols=189  Identities=12%  Similarity=0.073  Sum_probs=107.7

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCC--CCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccc
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPV--TKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEH  344 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~--~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~  344 (511)
                      ....+|...+++.|++|+++++|++|..+++  +++   +.+..++.  +++|+ .||+|+|+...|++ -..|.|. ..
T Consensus       110 ~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~---~~v~~~~g--~i~ad-~VVlAtG~~s~p~~-g~~G~g~-~l  181 (401)
T 2gqf_A          110 QIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR---FVLQVNST--QWQCK-NLIVATGGLSMPGL-GATPFGY-QI  181 (401)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC---EEEEETTE--EEEES-EEEECCCCSSCGGG-TCCSHHH-HH
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe---EEEEECCC--EEECC-EEEECCCCccCCCC-CCChHHH-HH
Confidence            3444565666778999999999999987621  122   33444444  68997 69999999876642 1111111 11


Q ss_pred             cccCCCCccccCc--cchhhhhc-cc---CceEEEEEcCCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee---e
Q psy760          345 LNDLNIPVIKNLR--VGENLQEH-LA---MAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---I  415 (511)
Q Consensus       345 L~~~gi~vv~~~P--VG~nl~DH-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~  415 (511)
                      ++.+|++++...|  +..++.+. ..   +.+...  +..+.+  .+..            ...|.+..+|++.+|   +
T Consensus       182 a~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~--~~~~~i--~G~~------------~~~g~~l~t~~g~sG~~~l  245 (401)
T 2gqf_A          182 AEQFGIPVIPPRASLVPFTYRETDKFLTALSGISL--PVTITA--LCGK------------SFYNQLLFTHRGISGPAVL  245 (401)
T ss_dssp             HHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEE--EEEEEE--TTSC------------EEEEEEEECSSEEESHHHH
T ss_pred             HHHCCCCcccCcceeeceecCCchhhcccCCCeee--eeEEEE--cCCc------------eEEeCEEEECCCccHHHHH
Confidence            4566777665555  44443221 11   001111  111111  0100            123778888888887   4


Q ss_pred             eehhccchhhhhccCCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhHHH---HHhhccccccccceee
Q psy760          416 KTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVWFW---LVQNGCQMSGKWSNLY  489 (511)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~---~~~~~~~~~~~~~~~~  489 (511)
                      .++....+      +..+.|+|.++.+..++   +.+.+++.+++++.+.  ..+|.++|   +.+.|++ +++|+++-
T Consensus       246 ~~s~~~~~------~~~~~i~~~p~~~~~~~---~~~~~~~~~~~~~~~~l~~~lp~~~~~~~~~~~~~~-~~~~~~~~  314 (401)
T 2gqf_A          246 QISNYWQP------TESVEIDLLPNHNVEEE---INQAKQSSPKQMLKTILVRLLPKKLVELWIEQGIVQ-DEVIANIS  314 (401)
T ss_dssp             HHTTTCCT------TCCEEEESCSSSCHHHH---HHHHHHHCTTSBHHHHHTTTSCHHHHHHHHHTTSSC-CCBGGGCC
T ss_pred             HHHHHHhc------CCEEEEECCCCCCHHHH---HHHHhhhcccccHHHHhhhhcCHHHHHHHHHHcCCC-CCchhhCC
Confidence            44433221      47899999887553222   3232312356666665  45999999   6677888 68899873

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.48  E-value=3.5e-15  Score=157.28  Aligned_cols=58  Identities=16%  Similarity=0.229  Sum_probs=44.5

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      ....|...+++.|++|+++++|++|..++  +++.+|++. +++  +++|+ .||+|+|++..|
T Consensus       136 l~~~L~~~~~~~GV~i~~~~~V~~i~~~~--~~v~~V~~~-~G~--~i~Ad-~VVlAtGg~s~~  193 (447)
T 2i0z_A          136 VVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQ-TGE--VLETN-HVVIAVGGKSVP  193 (447)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEET-TCC--EEECS-CEEECCCCSSSG
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEecC--CcEEEEEEC-CCC--EEECC-EEEECCCCCcCC
Confidence            34455555667899999999999999875  677778764 343  58897 699999998755

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.47  E-value=2.5e-13  Score=147.36  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=50.3

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ....|...+++.|++|+++++|++|+.+++ ++++||++.. +++..+++|+ .||+|+|++...+
T Consensus       252 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~A~-~VVlAtGg~s~~~  315 (566)
T 1qo8_A          252 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGMNK  315 (566)
T ss_dssp             HHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEE-EEEECCCCCTTCH
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEEcC-EEEEecCCcccCH
Confidence            344555566778999999999999998753 6899999885 6766689995 7999999987643

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.46  E-value=4.4e-13  Score=145.61  Aligned_cols=62  Identities=18%  Similarity=0.122  Sum_probs=50.2

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      ....|...+++.|++|+++++|++|+.+++ ++++||++.. +++..+++|+ .||+|+|++...
T Consensus       257 l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~i~a~-~VVlAtGg~~~n  319 (571)
T 1y0p_A          257 VVQVLYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKAD-AVILATGGFAKN  319 (571)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECS-EEEECCCCCTTC
T ss_pred             HHHHHHHHHHhcCCEEEeCCEeeEeEEcCC-CeEEEEEEEeCCCcEEEEECC-eEEEeCCCcccC
Confidence            344565666778999999999999998753 6899999886 6776789997 599999998753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.42  E-value=7.5e-13  Score=134.44  Aligned_cols=67  Identities=13%  Similarity=-0.043  Sum_probs=48.4

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhc-CCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS-GIG  340 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~S-GIG  340 (511)
                      ...|...+++.|++|+++++|++|..+++  .++.|++ .+|+..+++|+ .||+|+|++ |++|+... |+.
T Consensus       153 ~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~--~~~~v~~-~~g~~~~~~a~-~VV~A~G~~-s~~l~~~~~g~~  220 (369)
T 3dme_A          153 MLAYQGDAESDGAQLVFHTPLIAGRVRPE--GGFELDF-GGAEPMTLSCR-VLINAAGLH-APGLARRIEGIP  220 (369)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEECTT--SSEEEEE-CTTSCEEEEEE-EEEECCGGG-HHHHHHTEETSC
T ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEEcCC--ceEEEEE-CCCceeEEEeC-EEEECCCcc-hHHHHHHhcCCC
Confidence            33455556778999999999999998763  3233543 34444478997 699999974 88888877 764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.38  E-value=1.5e-12  Score=133.53  Aligned_cols=63  Identities=19%  Similarity=0.171  Sum_probs=47.5

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ..|...+++.|++|+++++|++|..++  ++++||++  .+.  +++|+ .||+|+|++ ++.++...|+.
T Consensus       153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~~--~~v~gv~~--~~g--~i~a~-~VV~A~G~~-s~~l~~~~g~~  215 (382)
T 1y56_B          153 TAFAVKAKEYGAKLLEYTEVKGFLIEN--NEIKGVKT--NKG--IIKTG-IVVNATNAW-ANLINAMAGIK  215 (382)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEE--TTE--EEECS-EEEECCGGG-HHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCEEECCceEEEEEEEC--CEEEEEEE--CCc--EEECC-EEEECcchh-HHHHHHHcCCC
Confidence            345455667899999999999999876  67777764  223  68997 699999974 77777776653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.37  E-value=5.8e-12  Score=136.80  Aligned_cols=67  Identities=22%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCc-HHHHHh
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNS-PKLLML  336 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~S-P~LL~~  336 (511)
                      ....|...+++.|++|+++++|++|+.+++ ++++||++.. +++..+++|+ .||||+|++.. +.++..
T Consensus       257 l~~~L~~~~~~~gv~i~~~t~v~~l~~~~~-g~v~GV~~~~~~G~~~~i~A~-~VVlAtGg~~~~~~~~~~  325 (572)
T 1d4d_A          257 VAQVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNERVSK  325 (572)
T ss_dssp             HHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCeEEecCEEEEEEECCC-CeEEEEEEEeCCCcEEEEEcC-EEEEeCCCCccCHHHHHH
Confidence            344555566778999999999999987653 6899999885 6766789996 79999999874 455543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.36  E-value=1e-11  Score=135.64  Aligned_cols=59  Identities=17%  Similarity=0.295  Sum_probs=47.6

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+.+.|++|++++.|++|+.++  ++++||.+..  +++...++|+ .||||+|++..
T Consensus       158 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  218 (621)
T 2h88_A          158 LHTLYGRSLRYDTSYFVEYFALDLLMEN--GECRGVIALCIEDGTIHRFRAK-NTVIATGGYGR  218 (621)
T ss_dssp             HHHHHHHHTTSCCEEEETEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEE-EEEECCCCCGG
T ss_pred             HHHHHHHHHhCCCEEEEceEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccc
Confidence            3345455667899999999999999875  7999998874  5666789996 79999999763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.35  E-value=8.3e-12  Score=127.53  Aligned_cols=62  Identities=16%  Similarity=-0.048  Sum_probs=45.7

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ..|...+++.|++|+++++|++|..++  ++ ++|  ...+.  +++|+ .||+|+|+ ++++|+...|+.
T Consensus       158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~--~~-~~V--~t~~g--~i~a~-~VV~A~G~-~s~~l~~~~g~~  219 (381)
T 3nyc_A          158 QGYLRGIRRNQGQVLCNHEALEIRRVD--GA-WEV--RCDAG--SYRAA-VLVNAAGA-WCDAIAGLAGVR  219 (381)
T ss_dssp             HHHHHHHHHTTCEEESSCCCCEEEEET--TE-EEE--ECSSE--EEEES-EEEECCGG-GHHHHHHHHTCC
T ss_pred             HHHHHHHHHCCCEEEcCCEEEEEEEeC--Ce-EEE--EeCCC--EEEcC-EEEECCCh-hHHHHHHHhCCC
Confidence            344455667899999999999999876  33 334  33333  68997 69999997 588888876753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.33  E-value=7.6e-12  Score=137.63  Aligned_cols=58  Identities=10%  Similarity=0.159  Sum_probs=46.4

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..|...+.+.|++|++++.|++|+.++  ++++||.+..  +++...++|+ .||||+|++..
T Consensus       162 ~~L~~~a~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~G~~~~i~A~-~VVlATGG~~~  221 (660)
T 2bs2_A          162 FAVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECS-EEEECCCCCGG
T ss_pred             HHHHHHHHhCCCEEEECcEEEEEEecC--CEEEEEEEEECCCCcEEEEEcC-EEEEccCcchh
Confidence            344445566799999999999999875  7899998863  5666679996 79999999863

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.33  E-value=2.4e-11  Score=125.31  Aligned_cols=37  Identities=32%  Similarity=0.610  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..++||||||||++|+++|+.|++ .|++|+||||+..
T Consensus         2 ~~~~DVvIIGaG~~Gl~~A~~La~-~G~~V~vlE~~~~   38 (397)
T 2oln_A            2 TESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHTF   38 (397)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            346999999999999999999999 8999999999853

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.32  E-value=3e-11  Score=131.43  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ..|...+++.|++|++++.|++|+.+++ ++++||.+..  +++..+++|+ .||+|+|++..
T Consensus       147 ~~L~~~~~~~gv~i~~~~~v~~L~~~~~-g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGg~~~  207 (588)
T 2wdq_A          147 HTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKAR-ATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHHHTTCEEEETEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEEE-EEEECCCCCGG
T ss_pred             HHHHHHHHhCCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCeEEEEEcC-EEEECCCCCcc
Confidence            3454555667999999999999998632 7899998864  5666679996 79999999753

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.31  E-value=1.8e-11  Score=126.36  Aligned_cols=62  Identities=23%  Similarity=0.277  Sum_probs=46.8

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..|...+++.|++|+++++|++|..++  +++++|++. ++   +++|+ .||+|+|+ +++.++...|+
T Consensus       178 ~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~~~v~~~-~g---~~~a~-~vV~a~G~-~s~~l~~~~g~  239 (405)
T 2gag_B          178 WAFARKANEMGVDIIQNCEVTGFIKDG--EKVTGVKTT-RG---TIHAG-KVALAGAG-HSSVLAEMAGF  239 (405)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESS--SBEEEEEET-TC---CEEEE-EEEECCGG-GHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCEEEcCCeEEEEEEeC--CEEEEEEeC-Cc---eEECC-EEEECCch-hHHHHHHHcCC
Confidence            345555667899999999999998875  567777643 33   58897 69999997 46677777665

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.29  E-value=1.2e-11  Score=133.39  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=45.1

Q ss_pred             hhHhhhhC-CCcEEEeCceEEEEEEcCCCC------cEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          271 YIDPIKKR-CNLTVKDSSFVKKILIDPVTK------KACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       271 ~L~~~~~r-~gv~v~~~t~V~~I~~d~~~~------ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .|...+++ .|++|++++.|++|+.+++ +      +++||.+..  +++..+++|+ .||+|+|++..
T Consensus       143 ~L~~~~~~~~gv~i~~~~~v~~L~~~~~-g~~~~~~~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~~~  209 (540)
T 1chu_A          143 TLVSKALNHPNIRVLERTNAVDLIVSDK-IGLPGTRRVVGAWVWNRNKETVETCHAK-AVVLATGGASK  209 (540)
T ss_dssp             CCHHHHHHCTTEEEECSEEEEEEEEGGG-TTCCSSCBEEEEEEEETTTTEEEEEECS-EEEECCCCCGG
T ss_pred             HHHHHHHcCCCCEEEeCcEEEEEEEcCC-CCcccCCEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence            34444444 7999999999999998432 4      899999875  5776789996 79999999753

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.27  E-value=6.8e-12  Score=131.31  Aligned_cols=61  Identities=18%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             hHHhhHhhhhCCCcEEEeCc---eEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSS---FVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t---~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      ....|...+++.|++|++++   +|++|..++  ++++||++. +++  +++|+ .||+|+|++ |++|+.
T Consensus       163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~--~~v~gV~t~-~G~--~i~Ad-~VV~AtG~~-s~~l~~  226 (438)
T 3dje_A          163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIFEN--NDVKGAVTA-DGK--IWRAE-RTFLCAGAS-AGQFLD  226 (438)
T ss_dssp             HHHHHHHHHHHTTCEEEESTTTTCEEEEEEET--TEEEEEEET-TTE--EEECS-EEEECCGGG-GGGTSC
T ss_pred             HHHHHHHHHHhcCCEEEeCCcCceEEEEEecC--CeEEEEEEC-CCC--EEECC-EEEECCCCC-hhhhcC
Confidence            33445556677899999999   999999876  678888764 343  68897 699999985 666654

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.26  E-value=1.1e-10  Score=119.63  Aligned_cols=35  Identities=34%  Similarity=0.496  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||||||||++|+++|++|++ .|++|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~-~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            5899999999999999999999 7999999999854

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.25  E-value=4.5e-11  Score=129.45  Aligned_cols=81  Identities=19%  Similarity=0.145  Sum_probs=59.1

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccc-c
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN-D  347 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~-~  347 (511)
                      .+...+++.|++|+++++|++|..++  ++++||++.+  +|+..+++|+ .||+|+|+ ++++++...|+.....+. .
T Consensus       175 ~L~~~a~~~G~~i~~~~~V~~l~~~~--g~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~-~s~~l~~~~g~~~~~~v~p~  250 (561)
T 3da1_A          175 EIMKEAVARGAVALNYMKVESFIYDQ--GKVVGVVAKDRLTDTTHTIYAK-KVVNAAGP-WVDTLREKDRSKHGKYLKLS  250 (561)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEEET--TEEEEEEEEETTTCCEEEEEEE-EEEECCGG-GHHHHHHTTTCCCSSEEEEE
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEEcC--CeEEEEEEEEcCCCceEEEECC-EEEECCCc-chHHHHHhcCCCCCceEEec
Confidence            34444667899999999999999876  7899999875  4556689996 69999997 588898887765322232 3


Q ss_pred             CCCCcccc
Q psy760          348 LNIPVIKN  355 (511)
Q Consensus       348 ~gi~vv~~  355 (511)
                      .|..++.+
T Consensus       251 kG~~lvl~  258 (561)
T 3da1_A          251 KGVHLVVD  258 (561)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEC
Confidence            44444433

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.24  E-value=1.3e-10  Score=126.14  Aligned_cols=63  Identities=17%  Similarity=0.053  Sum_probs=50.5

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ..+++.|++|+++++|++|..++  ++++||++.+  .++..+++|+ .||+|+|++ ++.++...|+.
T Consensus       196 ~~a~~~Ga~i~~~t~V~~l~~~~--~~v~gV~~~d~~tg~~~~i~A~-~VV~AaG~w-s~~l~~~~g~~  260 (571)
T 2rgh_A          196 KKAAEDGAYLVSKMKAVGFLYEG--DQIVGVKARDLLTDEVIEIKAK-LVINTSGPW-VDKVRNLNFTR  260 (571)
T ss_dssp             HHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTCCEEEEEBS-CEEECCGGG-HHHHHTTCCSS
T ss_pred             HHHHHcCCeEEeccEEEEEEEeC--CEEEEEEEEEcCCCCEEEEEcC-EEEECCChh-HHHHHHhhccC
Confidence            44567899999999999999886  6888998875  4555579997 699999975 88888776653

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.23  E-value=1.7e-11  Score=138.95  Aligned_cols=62  Identities=21%  Similarity=0.213  Sum_probs=47.1

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..|...+++.|++|+++++|++|..++  +++++|++.  +.  +++|+ .||+|+|++ ++.++...|+
T Consensus       155 ~~L~~~a~~~Gv~i~~~t~V~~i~~~~--~~v~~V~t~--~G--~i~Ad-~VV~AaG~~-s~~l~~~~g~  216 (830)
T 1pj5_A          155 QLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTA--DG--VIPAD-IVVSCAGFW-GAKIGAMIGM  216 (830)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEET--TE--EEECS-EEEECCGGG-HHHHHHTTTC
T ss_pred             HHHHHHHHHcCCEEECCceEEEEEEeC--CEEEEEEEC--Cc--EEECC-EEEECCccc-hHHHHHHhCC
Confidence            345555667899999999999999876  567777542  23  68997 699999984 7788777665

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.23  E-value=3.6e-11  Score=132.23  Aligned_cols=59  Identities=15%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             hhHhhhhCC--CcEEEeCceEEEEEEcCC-CCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760          271 YIDPIKKRC--NLTVKDSSFVKKILIDPV-TKKACGVLATI--KGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       271 ~L~~~~~r~--gv~v~~~t~V~~I~~d~~-~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      .|...+++.  |++|+.++.|++|+.+++ .++++||.+..  +++...++|+ .||||+|++..
T Consensus       171 ~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVLATGG~g~  234 (662)
T 3gyx_A          171 IVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKAN-AMVVACGGAVN  234 (662)
T ss_dssp             HHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBCS
T ss_pred             HHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeC-EEEECCCcccc
Confidence            344445554  999999999999998762 13999998763  5666789996 79999999763

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.19  E-value=2.1e-10  Score=126.20  Aligned_cols=61  Identities=20%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             HHhhHhhhhCC-Cc-EEEeCceEEEEEEcCC-CCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760          269 KDYIDPIKKRC-NL-TVKDSSFVKKILIDPV-TKKACGVLAT--IKGIDHKILARKEVILSAGAFNS  330 (511)
Q Consensus       269 ~~~L~~~~~r~-gv-~v~~~t~V~~I~~d~~-~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S  330 (511)
                      ...|...+++. |+ +|++++.|++|+.+++ .++|+||.+.  .+++...++|+ .||+|+|++..
T Consensus       154 ~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~-~VVlAtGG~~~  219 (643)
T 1jnr_A          154 KPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAK-AVILATGGATL  219 (643)
T ss_dssp             HHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBCS
T ss_pred             HHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcC-EEEECCCcccc
Confidence            33454455555 99 9999999999998752 1299999875  35666678995 79999999865

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.19  E-value=1.4e-10  Score=126.54  Aligned_cols=59  Identities=22%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             HhhHhhhhCCC-cEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcH
Q psy760          270 DYIDPIKKRCN-LTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       270 ~~L~~~~~r~g-v~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      ..|...+.+.| ++|++++.|++|+.++  ++++||.+..  +|+...++|+ .||+|+|++...
T Consensus       138 ~~L~~~~~~~gnv~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~G~~~~i~A~-~VVlAtGg~s~~  199 (602)
T 1kf6_A          138 HTLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECS-CEEECCCCCGGG
T ss_pred             HHHHHHHHhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEEcCCCcEEEEEcC-eEEECCCCCccc
Confidence            34444455566 9999999999999876  7899998763  5666689997 699999997543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.14  E-value=4.5e-10  Score=124.31  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||||||||++|+++|++|++ .|++|+||||...
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~-~G~~V~vlEk~~~  306 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLR-RGWQVTLYCADEA  306 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCc
Confidence            45999999999999999999999 8999999999753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.14  E-value=1.6e-10  Score=128.27  Aligned_cols=36  Identities=22%  Similarity=0.095  Sum_probs=33.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++||||||||++|+++|++|++ .|++|+||||+..
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~-~G~~V~vlEk~~~  298 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQR-RGAVVTLYCADAQ  298 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHT-TTCCEEEEESSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH-CCCcEEEEeCCCc
Confidence            46999999999999999999999 8999999999753

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.13  E-value=5.7e-11  Score=124.71  Aligned_cols=63  Identities=19%  Similarity=0.280  Sum_probs=46.5

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEE---------------cCCCCcEEEEEEEECCeEEEE--EeCcEEEEccCCCCcH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILI---------------DPVTKKACGVLATIKGIDHKI--LARKEVILSAGAFNSP  331 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~---------------d~~~~ra~GV~~~~~g~~~~v--~A~k~VILAAGa~~SP  331 (511)
                      ...|...+++.|++|+++++|++|..               ++  +++++|+.. ++   ++  +|+ .||+|+|++ ++
T Consensus       184 ~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~--~~v~~V~t~-~g---~i~~~Ad-~VV~AtG~~-s~  255 (448)
T 3axb_A          184 VDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQE--ARASAAVLS-DG---TRVEVGE-KLVVAAGVW-SN  255 (448)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSC--EEEEEEEET-TS---CEEEEEE-EEEECCGGG-HH
T ss_pred             HHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCC--CceEEEEeC-CC---EEeecCC-EEEECCCcC-HH
Confidence            33455556678999999999999987               33  566677642 33   47  897 699999985 78


Q ss_pred             HHHHhcCC
Q psy760          332 KLLMLSGI  339 (511)
Q Consensus       332 ~LL~~SGI  339 (511)
                      +++...|+
T Consensus       256 ~l~~~~g~  263 (448)
T 3axb_A          256 RLLNPLGI  263 (448)
T ss_dssp             HHHGGGTC
T ss_pred             HHHHHcCC
Confidence            88877664

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.13  E-value=1e-10  Score=119.75  Aligned_cols=63  Identities=13%  Similarity=0.096  Sum_probs=45.0

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ....|...+++.|++|+++++|++|..++  +++ +|+.  .+.  +++|+ .||+|+|++ ++.++...|+
T Consensus       166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~--~~~-~v~~--~~g--~~~a~-~vV~A~G~~-s~~l~~~~~~  228 (382)
T 1ryi_A          166 VCKAYVKAAKMLGAEIFEHTPVLHVERDG--EAL-FIKT--PSG--DVWAN-HVVVASGVW-SGMFFKQLGL  228 (382)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSS--SSE-EEEE--TTE--EEEEE-EEEECCGGG-THHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCEEEcCCcEEEEEEEC--CEE-EEEc--CCc--eEEcC-EEEECCChh-HHHHHHhcCC
Confidence            33445555667899999999999998765  444 4543  333  68897 699999984 6777766554

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.12  E-value=1.7e-10  Score=124.08  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH--HHHhcCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK--LLMLSGI  339 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~--LL~~SGI  339 (511)
                      ..|...+++.|++|+++++|++|..++  +++++|++. +++  ++.|+ .||+|+|+.....  +|...|+
T Consensus       224 ~~L~~~l~~~Gv~I~~~t~V~~I~~~~--~~v~gV~l~-~G~--~i~Ad-~VVlA~G~~s~~~~~~l~~~Gi  289 (549)
T 3nlc_A          224 EKMRATIIELGGEIRFSTRVDDLHMED--GQITGVTLS-NGE--EIKSR-HVVLAVGHSARDTFEMLHERGV  289 (549)
T ss_dssp             HHHHHHHHHTTCEEESSCCEEEEEESS--SBEEEEEET-TSC--EEECS-CEEECCCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEEeC--CEEEEEEEC-CCC--EEECC-EEEECCCCChhhHHHHHHHcCC
Confidence            345455566899999999999999876  678888764 343  58897 5999999954333  4444444

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.11  E-value=5.5e-10  Score=113.79  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||||||||++|+++|++|++ .|++|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~-~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            4899999999999999999999 7999999999864

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.07  E-value=4.4e-10  Score=114.80  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=46.0

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      ..+|...+.+.|++++.+++|+.+..++  +++++|....+++..+++|+ -||-|.| .+|.
T Consensus       105 ~~~L~~~a~~~G~~~~~~~~v~~~~~~~--~~~~~v~~~~~~~~~~~~a~-~vIgAdG-~~S~  163 (397)
T 3oz2_A          105 DKHLAALAAKAGADVWVKSPALGVIKEN--GKVAGAKIRHNNEIVDVRAK-MVIAADG-FESE  163 (397)
T ss_dssp             HHHHHHHHHHHTCEEESSCCEEEEEEET--TEEEEEEEEETTEEEEEEEE-EEEECCC-TTCH
T ss_pred             HHHHHHHHHhcCcEEeeeeeeeeeeecc--ceeeeeeecccccceEEEEe-EEEeCCc-cccH
Confidence            3456666677899999999999999887  78888888888887889996 4555555 4664

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.07  E-value=1.9e-09  Score=115.12  Aligned_cols=60  Identities=13%  Similarity=0.001  Sum_probs=46.5

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      .+...+++.|++|+++++|++|..++   ++.+|++.+  +|+..+++|+ .||+|+|++ +..++.
T Consensus       154 ~l~~~a~~~Gv~i~~~~~V~~l~~~~---~~~~V~~~d~~~G~~~~i~A~-~VV~AtG~~-s~~l~~  215 (501)
T 2qcu_A          154 ANAQMVVRKGGEVLTRTRATSARREN---GLWIVEAEDIDTGKKYSWQAR-GLVNATGPW-VKQFFD  215 (501)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEET---TEEEEEEEETTTCCEEEEEES-CEEECCGGG-HHHHHH
T ss_pred             HHHHHHHHcCCEEEcCcEEEEEEEeC---CEEEEEEEECCCCCEEEEECC-EEEECCChh-HHHHHH
Confidence            34445567899999999999998864   577887764  4665679997 699999984 777776

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.06  E-value=9.3e-10  Score=108.62  Aligned_cols=36  Identities=28%  Similarity=0.485  Sum_probs=33.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG~~  104 (511)
                      .+|||||||||++|+++|+.|++ . |.+|+|||+.+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~-~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCCeEEEEECCCC
Confidence            46899999999999999999999 6 999999999864

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.03  E-value=6.4e-10  Score=118.24  Aligned_cols=63  Identities=14%  Similarity=0.038  Sum_probs=43.3

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      .....|...+++.|++|+++++|++|+.++  ++++||++.+ |+  ++.|+ .||++++...+.+.|.
T Consensus       222 ~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~--~~~~gV~~~~-g~--~~~ad-~VV~~a~~~~~~~~Ll  284 (501)
T 4dgk_A          222 ALVQGMIKLFQDLGGEVVLNARVSHMETTG--NKIEAVHLED-GR--RFLTQ-AVASNADVVHTYRDLL  284 (501)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETT-SC--EEECS-CEEECCC---------
T ss_pred             chHHHHHHHHHHhCCceeeecceeEEEeeC--CeEEEEEecC-Cc--EEEcC-EEEECCCHHHHHHHhc
Confidence            344455556778899999999999999987  7999998754 44  68897 6999999877766553

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.98  E-value=1.4e-09  Score=112.89  Aligned_cols=61  Identities=25%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      ....|...+++.|++|+++++|++|..++  ++++||++  +++  ++.|+ .||+|+|+..+++||.
T Consensus       198 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~gv~~--~g~--~~~ad-~VV~a~~~~~~~~ll~  258 (425)
T 3ka7_A          198 IIDALETVISANGGKIHTGQEVSKILIEN--GKAAGIIA--DDR--IHDAD-LVISNLGHAATAVLCS  258 (425)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEE--TTE--EEECS-EEEECSCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCEEEECCceeEEEEEC--CEEEEEEE--CCE--EEECC-EEEECCCHHHHHHhcC
Confidence            33445555667899999999999999886  67888865  344  68897 6999999876666553

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.97  E-value=1.7e-09  Score=114.61  Aligned_cols=53  Identities=13%  Similarity=0.387  Sum_probs=39.9

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      .|...+++.|++|++++.| +|+.++  ++++||.+...+.  ++.|+ .||+|+|++.
T Consensus       124 ~L~~~~~~~gv~i~~~~~v-~l~~~~--~~v~Gv~v~~~~g--~~~a~-~VVlAtGg~~  176 (472)
T 2e5v_A          124 FLLKLAREEGIPIIEDRLV-EIRVKD--GKVTGFVTEKRGL--VEDVD-KLVLATGGYS  176 (472)
T ss_dssp             HHHHHHHHTTCCEECCCEE-EEEEET--TEEEEEEETTTEE--ECCCS-EEEECCCCCG
T ss_pred             HHHHHHHhCCCEEEECcEE-EEEEeC--CEEEEEEEEeCCC--eEEee-eEEECCCCCc
Confidence            4444456789999999999 998876  6888987753222  46686 7999999943

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.92  E-value=6.3e-09  Score=104.92  Aligned_cols=37  Identities=43%  Similarity=0.640  Sum_probs=33.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .+|||||||||++|+++|+.|++. +|++|+|||++..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            469999999999999999999993 4999999999854

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.89  E-value=8.6e-09  Score=112.02  Aligned_cols=72  Identities=13%  Similarity=0.143  Sum_probs=50.5

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----CCeE-------EEEEeCcEEEEccCCCCcH--H
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----KGID-------HKILARKEVILSAGAFNSP--K  332 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----~g~~-------~~v~A~k~VILAAGa~~SP--~  332 (511)
                      ....+|...+++.|++|+.++.|++|..+++ ++++||.+.+     +|+.       .+++|+ .||+|.|+...-  +
T Consensus       145 ~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~-g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad-~VV~AdG~~S~vr~~  222 (584)
T 2gmh_A          145 HLVSWMGEQAEALGVEVYPGYAAAEILFHED-GSVKGIATNDVGIQKDGAPKTTFERGLELHAK-VTIFAEGCHGHLAKQ  222 (584)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEECTT-SSEEEEEECCEEECTTSCEEEEEECCCEEECS-EEEECCCTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC-CCEEEEEeCCccccCCCCcccccCCceEEECC-EEEEeeCCCchHHHH
Confidence            3444666666777999999999999998764 6788887752     3322       378996 799999986542  3


Q ss_pred             HHHhcCCC
Q psy760          333 LLMLSGIG  340 (511)
Q Consensus       333 LL~~SGIG  340 (511)
                      ++..-|+.
T Consensus       223 l~~~~gl~  230 (584)
T 2gmh_A          223 LYKKFDLR  230 (584)
T ss_dssp             HHHHTTTT
T ss_pred             HHHHhCCC
Confidence            44444554

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.85  E-value=1.7e-08  Score=101.14  Aligned_cols=36  Identities=31%  Similarity=0.450  Sum_probs=32.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCC--CCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~--G~~VLVLEaG~~  104 (511)
                      .++||+|||||++|+++|+.|++ .  |++|+|+|+.+.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~-~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAK-NRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHH-HCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHh-cCCCCeEEEEecCcc
Confidence            46899999999999999999998 5  999999999864

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.84  E-value=8.9e-09  Score=110.09  Aligned_cols=58  Identities=21%  Similarity=0.265  Sum_probs=46.1

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~  328 (511)
                      ...+|...+++.|++|+.+++|++|..++  ++++||.+.. +|+..+++|+ -||.|+|..
T Consensus       113 l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~--~~v~gv~~~~~dG~~~~i~ad-~VI~AdG~~  171 (512)
T 3e1t_A          113 FDDMLLRNSERKGVDVRERHEVIDVLFEG--ERAVGVRYRNTEGVELMAHAR-FIVDASGNR  171 (512)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEEET--TEEEEEEEECSSSCEEEEEEE-EEEECCCTT
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEEEC--CEEEEEEEEeCCCCEEEEEcC-EEEECCCcc
Confidence            44466666667899999999999999876  7888998875 4555689996 699999974

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.84  E-value=2.8e-09  Score=112.14  Aligned_cols=57  Identities=9%  Similarity=0.061  Sum_probs=45.2

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~  328 (511)
                      ...|...+.+.|++|+.+++|++|..++  ++++||++..  +|+..+++|+ .||.|+|+.
T Consensus       103 ~~~L~~~a~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~G~~~~~~ad-~VV~AdG~~  161 (453)
T 3atr_A          103 NQRVLKEAQDRGVEIWDLTTAMKPIFED--GYVKGAVLFNRRTNEELTVYSK-VVVEATGYS  161 (453)
T ss_dssp             HHHHHHHHHHTTCEEESSEEEEEEEEET--TEEEEEEEEETTTTEEEEEECS-EEEECCGGG
T ss_pred             HHHHHHHHHHcCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCceEEEEcC-EEEECcCCc
Confidence            3455555666899999999999998876  6888888875  5666689997 699999973

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.82  E-value=1.5e-08  Score=110.04  Aligned_cols=68  Identities=12%  Similarity=0.095  Sum_probs=49.9

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ...+|...+++.|++++.+++|++|..++  +++++|.+..+|+..+++|+ -||.|+|. +| .+...-|+.
T Consensus       130 l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~--g~~~~V~~~~~G~~~~i~Ad-lVV~AdG~-~S-~lr~~lg~~  197 (591)
T 3i3l_A          130 FDKLLLDEARSRGITVHEETPVTDVDLSD--PDRVVLTVRRGGESVTVESD-FVIDAGGS-GG-PISRKLGVR  197 (591)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEECCS--TTCEEEEEEETTEEEEEEES-EEEECCGG-GC-HHHHHHTCE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CCEEEEEEecCCceEEEEcC-EEEECCCC-cc-hhHHHcCCC
Confidence            44456666677899999999999998764  56778887767766689997 69999997 34 344443543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.79  E-value=1.3e-08  Score=105.47  Aligned_cols=36  Identities=31%  Similarity=0.514  Sum_probs=33.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCC--CCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~--G~~VLVLEaG~~  104 (511)
                      .++||||||||++|+++|+.|++ .  |.+|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~-~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQ-LAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-HCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHh-cCCCCeEEEEeCCCC
Confidence            35999999999999999999999 6  999999999753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.79  E-value=1.2e-08  Score=102.61  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|||+|||||++|+++|..|++ .|.+|+|+|+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~-~g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRR-SGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-SSCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            5899999999999999999999 7999999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.78  E-value=4.5e-08  Score=101.34  Aligned_cols=35  Identities=26%  Similarity=0.649  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||||||||++|+++|+.|++ .|.+|+|||+...
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~-~G~~V~v~E~~~~   39 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKF   39 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCS
T ss_pred             cCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            5999999999999999999999 8999999999853

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.75  E-value=1.3e-08  Score=110.58  Aligned_cols=35  Identities=29%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||.||+.+|+.||+ .|.+|+|||++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAAR-MGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHh-CCCCEEEEeecc
Confidence            57999999999999999999999 899999999974

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.74  E-value=1.4e-08  Score=109.93  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=32.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||.||+.+|+.||+ .|.+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr-~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR-MGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCCEEEEEecc
Confidence            46999999999999999999999 899999999974

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.70  E-value=1.3e-07  Score=98.21  Aligned_cols=60  Identities=20%  Similarity=0.105  Sum_probs=43.6

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      .....|...+++.|++|+++++|++|..++  +++    +..+++  ++.|+ .||+|+|....++||-
T Consensus       190 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~v----V~~~g~--~~~ad-~Vv~a~~~~~~~~ll~  249 (421)
T 3nrn_A          190 AVIDELERIIMENKGKILTRKEVVEINIEE--KKV----YTRDNE--EYSFD-VAISNVGVRETVKLIG  249 (421)
T ss_dssp             HHHHHHHHHHHTTTCEEESSCCEEEEETTT--TEE----EETTCC--EEECS-EEEECSCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEEC--CEE----EEeCCc--EEEeC-EEEECCCHHHHHHhcC
Confidence            334455555677899999999999998765  444    344454  68897 6999999876666553

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.70  E-value=3.5e-07  Score=98.19  Aligned_cols=70  Identities=10%  Similarity=0.001  Sum_probs=46.7

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEE--EEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACG--VLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP  341 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~G--V~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp  341 (511)
                      ...+|...+++.|++|+.+++|++|..+++ +++.+  |.+.+.+...+++|+ -||.|.|+. | ++-..-|++.
T Consensus       122 l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~-~~~~~v~v~~~~~~~~~~i~a~-~vV~AdG~~-S-~vR~~lgi~~  193 (535)
T 3ihg_A          122 LEPILLAQARKHGGAIRFGTRLLSFRQHDD-DAGAGVTARLAGPDGEYDLRAG-YLVGADGNR-S-LVRESLGIGR  193 (535)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEEECG-GGCSEEEEEEEETTEEEEEEEE-EEEECCCTT-C-HHHHHTTCCE
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CccccEEEEEEcCCCeEEEEeC-EEEECCCCc-c-hHHHHcCCCc
Confidence            444566666667999999999999998763 33223  444444335589996 699999974 4 5555556543

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.68  E-value=1.1e-07  Score=100.06  Aligned_cols=42  Identities=33%  Similarity=0.475  Sum_probs=37.2

Q ss_pred             cccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           64 QDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        64 ~~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+.++|||||||+|.+|+++|+.|++ .|++|+||||++...
T Consensus        15 ~~~~~~~dv~iiG~G~~g~~~a~~l~~-~g~~v~~~e~~~~~G   56 (475)
T 3p1w_A           15 YFQGEHYDVIILGTGLKECILSGLLSH-YGKKILVLDRNPYYG   56 (475)
T ss_dssp             --CCCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             ccccccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeccCCCC
Confidence            356778999999999999999999999 899999999998764

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.67  E-value=7.4e-08  Score=91.93  Aligned_cols=34  Identities=32%  Similarity=0.449  Sum_probs=32.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +|||||||||++|+.+|..|++ .|.+|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~-~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            5999999999999999999999 799999999973

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.66  E-value=3.6e-08  Score=97.72  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=33.4

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |.+.|||||||||+||+++|.+|++ .|++|+|+|++.
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~-~g~~v~liE~~~   37 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGR-SSLKPVMYEGFM   37 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            3456999999999999999999999 899999999874

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.66  E-value=2.2e-07  Score=98.98  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=35.3

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +.+.++||||||||++|+++|+.|++ .|.+|+||||.+.
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~-~G~~v~vlE~~~~   45 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRL-AGVEVVVLERLVE   45 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCCC
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            56678999999999999999999999 8999999999854

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.62  E-value=1.4e-07  Score=93.39  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=32.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||||||||+||++||.+|++ .|++|+|+|++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar-~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGR-ARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            356999999999999999999999 899999999873

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.61  E-value=6.9e-08  Score=97.34  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC--CCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~--~G~~VLVLEaG~~  104 (511)
                      +||+|||||++|+++|+.|++.  .|++|+|+||++.
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            6999999999999999999982  5899999999864

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.61  E-value=2.7e-08  Score=105.94  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...+||+|||||++|+++|..|++ .|.+|+|||+.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~-~G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELAL-LGARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHH-CCCeEEEEEeccc
Confidence            457999999999999999999999 7999999999854

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.60  E-value=4.6e-08  Score=106.25  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ....+|||||||||.||+.+|+.||+ .|.+|+|||+..
T Consensus        17 ~~~~~yDVIVIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   54 (641)
T 3cp8_A           17 RGSHMYDVIVVGAGHAGCEAALAVAR-GGLHCLLITSDL   54 (641)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             cccCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEecc
Confidence            33457999999999999999999999 899999999974

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.60  E-value=1.6e-07  Score=97.02  Aligned_cols=39  Identities=26%  Similarity=0.245  Sum_probs=33.2

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...+.|||||||||++|+++|+.|++ .|.+|+||||.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~-~G~~V~v~E~~~~   57 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQ-SGIDCDVYEAVKE   57 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            34567999999999999999999999 8999999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.58  E-value=2.3e-07  Score=97.55  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=42.2

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--EC-CeEEEEEeCcEEEEccCCCCcHH
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IK-GIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~-g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ..|+...+++.+++++.+++|++|..++++++...+.+.  .+ ++..++.++ .||+|+|+  .|.
T Consensus       130 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d-~lVlAtG~--~p~  193 (463)
T 3s5w_A          130 NDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTR-ALVVSPGG--TPR  193 (463)
T ss_dssp             HHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEES-EEEECCCC--EEC
T ss_pred             HHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeC-EEEECCCC--CCC
Confidence            346666667778999999999999876322344333433  33 445578997 69999998  554

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.58  E-value=3.7e-07  Score=97.23  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=33.8

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+.++||||||||++|+++|..|++ .|.+|+||||.+.
T Consensus         9 ~~~~~dVlIVGaGpaGl~~A~~La~-~G~~v~vlE~~~~   46 (499)
T 2qa2_A            9 HRSDASVIVVGAGPAGLMLAGELRL-GGVDVMVLEQLPQ   46 (499)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            3467999999999999999999999 8999999999854

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.56  E-value=1.9e-07  Score=92.63  Aligned_cols=34  Identities=38%  Similarity=0.685  Sum_probs=32.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +|||||||||+||+++|.+|++ .|++|+|+|++.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~-~g~~V~liE~~~   39 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASR-ANLKTVMIERGI   39 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            6999999999999999999999 899999999863

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.56  E-value=2.1e-07  Score=92.67  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   41 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGM-RQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence            35899999999999999999999 8999999999854

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.55  E-value=1.6e-07  Score=101.63  Aligned_cols=36  Identities=33%  Similarity=0.409  Sum_probs=31.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+|||||||||++|+++|+.|++ .|++|+||||.+.
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~-~G~~V~VlEr~~~   83 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRA-GGVGALVLEKLVE   83 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHH-TTCCEEEEBSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEcCCCC
Confidence            46999999999999999999999 8999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.54  E-value=3.1e-07  Score=91.40  Aligned_cols=38  Identities=24%  Similarity=0.502  Sum_probs=33.0

Q ss_pred             cccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           64 QDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        64 ~~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +.|..++||+|||||++|+++|..|++ .|++|+|+|+.
T Consensus        11 ~~m~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   48 (319)
T 3cty_A           11 EEKERDFDVVIVGAGAAGFSAAVYAAR-SGFSVAILDKA   48 (319)
T ss_dssp             ---CCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             ccccCCCcEEEECcCHHHHHHHHHHHh-CCCcEEEEeCC
Confidence            346668999999999999999999999 79999999985

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.54  E-value=3e-07  Score=90.96  Aligned_cols=34  Identities=29%  Similarity=0.393  Sum_probs=32.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..+||||||||++|+++|.+|++ .|++|+|+|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSAR-YMLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHH-CCCcEEEEecc
Confidence            36999999999999999999999 79999999986

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.53  E-value=8.8e-08  Score=103.25  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=33.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...+||||||||++|+.+|.+|++ .|.+|+|||+++.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            456999999999999999999999 8999999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.53  E-value=2.6e-07  Score=92.43  Aligned_cols=36  Identities=22%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+|||||++|+++|.+|++ .|++|+|+|+.+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   39 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGM-RGLSFRFVDPLPE   39 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            46999999999999999999999 7999999999753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.53  E-value=3.8e-08  Score=101.12  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||||||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4899999999999999999999 8999999999753

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.53  E-value=3.3e-07  Score=83.35  Aligned_cols=33  Identities=39%  Similarity=0.749  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ||++|||||++|+.+|..|++ .|.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~-~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLAR-AGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            799999999999999999999 799999999975

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.51  E-value=1.2e-07  Score=101.98  Aligned_cols=66  Identities=20%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             hHHhhHhhhhCCCc--EEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          268 AKDYIDPIKKRCNL--TVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       268 ~~~~L~~~~~r~gv--~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      ...|+...+++.|+  +++.+++|+++..++++ ....|.+. +|+  ++.++ .||+|+|++..|++...-|
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~-~~~~V~~~-~G~--~i~ad-~lV~AtG~~s~p~~p~ipG  156 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDE-NLWEVTTD-HGE--VYRAK-YVVNAVGLLSAINFPNLPG  156 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTT-TEEEEEET-TSC--EEEEE-EEEECCCSCCSBCCCCCTT
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCC-CEEEEEEc-CCC--EEEeC-EEEECCcccccCCCCCCCC
Confidence            34466666777787  89999999999988642 23334332 344  57897 6999999877777554444

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.50  E-value=1.8e-07  Score=100.63  Aligned_cols=38  Identities=29%  Similarity=0.311  Sum_probs=34.5

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...++||||||||++|+++|.+|++ .|.+|+|+|+++.
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   50 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD   50 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            3457999999999999999999999 7999999999864

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.50  E-value=2.1e-07  Score=95.78  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=32.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++||||||||++|+++|..|++ .|.+|+|+|+.+.
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~-~G~~V~viE~~~~   40 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARR   40 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            5999999999999999999999 8999999999853

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.50  E-value=8.8e-07  Score=92.81  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=33.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~~~  105 (511)
                      ..+||+|||||++|+++|..|++ .|.  +|+|+|+.+..
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~-~G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLA-EKAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT-TTCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-cCCCCCeEEEecCCCC
Confidence            46899999999999999999999 799  99999998643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.50  E-value=2.7e-07  Score=93.45  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=33.4

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |...+||||||||++|+++|..|++ .|++|+|||+.+.
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   48 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGM-NNISCRIIESMPQ   48 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            4457999999999999999999999 8999999999753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.49  E-value=4.3e-07  Score=97.76  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=42.7

Q ss_pred             HHhhHhhhhCCCc--EEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          269 KDYIDPIKKRCNL--TVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       269 ~~~L~~~~~r~gv--~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..|+...+++.++  ++..+++|+++..+++.+ ...|++ .+|+  +++++ .||+|+|.+..|++...-|+
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~w~V~~-~~G~--~~~ad-~lV~AtG~~s~p~~p~ipG~  157 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDR-LWEVTL-DNEE--VVTCR-FLISATGPLSASRMPDIKGI  157 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGT-EEEEEE-TTTE--EEEEE-EEEECCCSCBC---CCCTTG
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCC-EEEEEE-CCCC--EEEeC-EEEECcCCCCCCcCCCCCCc
Confidence            4466666666666  788999999999876322 223333 2444  67897 69999998878887655453

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.48  E-value=3.7e-07  Score=92.52  Aligned_cols=34  Identities=29%  Similarity=0.485  Sum_probs=32.1

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      ++||+|||||++|+++|.+|++ .|. +|+|||+.+
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~-~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKD-FGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence            5899999999999999999999 798 999999985

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.45  E-value=1e-07  Score=90.23  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=33.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ++||+|||||++|+++|+.|++ .|++|+|+||.+..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~-~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTA-AGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            4899999999999999999999 89999999998654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.45  E-value=2.9e-06  Score=87.93  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=50.5

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ...++....++.|++|++++.|++|..++  +++++|++.+ |+  ++.|+ .||+|+|..-+..++..+|+
T Consensus       196 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~v~l~d-G~--~i~aD-~Vv~a~G~~p~~~l~~~~gl  261 (415)
T 3lxd_A          196 LSEFYQAEHRAHGVDLRTGAAMDCIEGDG--TKVTGVRMQD-GS--VIPAD-IVIVGIGIVPCVGALISAGA  261 (415)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEESS--SBEEEEEESS-SC--EEECS-EEEECSCCEESCHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCEEEECCEEEEEEecC--CcEEEEEeCC-CC--EEEcC-EEEECCCCccChHHHHhCCC
Confidence            33455556678899999999999998765  6788887654 43  68898 69999998555567877776

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.42  E-value=9.2e-06  Score=86.87  Aligned_cols=68  Identities=21%  Similarity=0.198  Sum_probs=48.0

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH-HHHhcCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK-LLMLSGI  339 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~-LL~~SGI  339 (511)
                      ..+....++.|++|++++.|++|..+++ ++++++.+...+.+.++.++ .||+|+|..-+.. +|...|+
T Consensus       259 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~-~~v~~~~v~~~~G~~~i~aD-~Vv~A~G~~p~~~~~l~~~gl  327 (523)
T 1mo9_A          259 AYVLDRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETD-FVFLGLGEQPRSAELAKILGL  327 (523)
T ss_dssp             HHHHHHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECS-CEEECCCCEECCHHHHHHHTC
T ss_pred             HHHHHHHHhCCcEEEECCEEEEEEEcCC-CceEEEEEEECCCcEEEEcC-EEEECcCCccCCccCHHHcCC
Confidence            3455556778999999999999987543 56655655543332368898 5999999854444 5676665

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.41  E-value=7e-07  Score=89.02  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=33.0

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .....+||||||||++|+++|..|++ .|++|+|+|+.+
T Consensus        18 ~~~~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~vie~~~   55 (338)
T 3itj_A           18 GSHVHNKVTIIGSGPAAHTAAIYLAR-AEIKPILYEGMM   55 (338)
T ss_dssp             ---CEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            33457999999999999999999999 799999999975

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.41  E-value=1.1e-06  Score=90.61  Aligned_cols=37  Identities=27%  Similarity=0.415  Sum_probs=33.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..++||||||||++|+++|..|++ .|.+|+|+||.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   60 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQ-NGIDVSVYERDND   60 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT-TTCEEEEEECSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            356999999999999999999999 8999999999854

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.41  E-value=7.1e-07  Score=97.96  Aligned_cols=39  Identities=31%  Similarity=0.548  Sum_probs=34.0

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++.++||||||||++|+++|+.|++..|.+|+||||.+.
T Consensus        29 ~~~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           29 VPSQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            445799999999999999999999723999999999853

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.40  E-value=9.4e-07  Score=87.29  Aligned_cols=32  Identities=31%  Similarity=0.523  Sum_probs=30.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      +|||+|||||++|+++|.+|++ .|.+|+|+|+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~-~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSAR-KGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-TTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeC
Confidence            4899999999999999999999 7999999985

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.40  E-value=1.5e-06  Score=85.75  Aligned_cols=32  Identities=28%  Similarity=0.484  Sum_probs=30.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG  102 (511)
                      |||+|||||++|+++|..|++ .|. +|+|+|+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~-~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATR-GGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHH-CCCCcEEEEcCC
Confidence            899999999999999999999 799 99999985

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.40  E-value=1.3e-06  Score=92.17  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             hHHhhHhhhhCCCcE--EEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          268 AKDYIDPIKKRCNLT--VKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~--v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      ...|+...+++.|++  |+.++.|++|..+++++ ...|.+..  +++..++.++ .||+|+|.+..|.+...-|
T Consensus       103 l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~-~~~V~~~~~~~g~~~~~~~d-~VVvAtG~~s~p~~p~ipG  175 (464)
T 2xve_A          103 LWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQ-TFTVTVQDHTTDTIYSEEFD-YVVCCTGHFSTPYVPEFEG  175 (464)
T ss_dssp             HHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTT-EEEEEEEETTTTEEEEEEES-EEEECCCSSSSBCCCCCBT
T ss_pred             HHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCC-cEEEEEEEcCCCceEEEEcC-EEEECCCCCCCCccCCCCC
Confidence            334666666666887  99999999998876322 23455544  2544578897 6999999877886554333

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.37  E-value=6.9e-07  Score=94.21  Aligned_cols=35  Identities=31%  Similarity=0.661  Sum_probs=32.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||++|+++|.+|++ .|++|+|+|+.+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~-~G~~V~liEk~~   37 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAK-AKYNVLMADPKG   37 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred             ccceEEEECCCHHHHHHHHHHHh-CCCeEEEEECCC
Confidence            46999999999999999999999 899999999764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.35  E-value=3.5e-06  Score=86.67  Aligned_cols=36  Identities=19%  Similarity=0.166  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+|||||++|+++|..|++ .|.+|+|+||.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            35899999999999999999999 8999999999853

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.33  E-value=1.8e-06  Score=85.95  Aligned_cols=35  Identities=37%  Similarity=0.668  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ...+||+|||||++|+++|.+|++ .|++|+|+|+.
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGR-AQLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH-cCCcEEEEeCC
Confidence            456999999999999999999999 79999999997

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.31  E-value=7.6e-06  Score=88.10  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=33.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++||||||||++|+++|..|++ .|.+|+||||.+.
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~-~G~~V~vlEr~~~   60 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAH-RQVGHLVVEQTDG   60 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            46999999999999999999999 8999999999854

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.30  E-value=4.7e-06  Score=81.33  Aligned_cols=34  Identities=35%  Similarity=0.624  Sum_probs=31.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||+|||||++|+.+|.+|++ .|++|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGR-ARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence            3899999999999999999999 799999999874

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.29  E-value=1e-05  Score=83.51  Aligned_cols=66  Identities=12%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG  340 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG  340 (511)
                      ...+....++.|+++++++.|++|..++  +++++|++.+ |+  ++.|+ .||+|+|..-+..++..+|+.
T Consensus       187 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~v~~V~~~d-G~--~i~aD-~Vv~a~G~~p~~~l~~~~gl~  252 (404)
T 3fg2_P          187 SSYFHDRHSGAGIRMHYGVRATEIAAEG--DRVTGVVLSD-GN--TLPCD-LVVVGVGVIPNVEIAAAAGLP  252 (404)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEETT-SC--EEECS-EEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEecC--CcEEEEEeCC-CC--EEEcC-EEEECcCCccCHHHHHhCCCC
Confidence            3455556678899999999999998765  6787887643 44  68898 699999986555678777763

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.28  E-value=1.8e-06  Score=85.06  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEE-EcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILL-LEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLV-LEaG  102 (511)
                      ..+||+|||||++|+++|.+|++ .|++|+| +|+.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR-GGLKNVVMFEKG   37 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-HTCSCEEEECSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-CCCCeEEEEeCC
Confidence            45899999999999999999999 7999999 9994

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.25  E-value=3.1e-06  Score=90.58  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=31.6

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      ...|||+|||||++|+++|.+|++ .|.+|+|+|+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~-~G~~v~lie~  243 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSAR-KGIRTGLMGE  243 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHh-CCCeEEEEEC
Confidence            357999999999999999999999 7999999986

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.24  E-value=3.5e-06  Score=83.49  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=31.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..+||+|||||++|+++|.+|++ .|++|+|+|+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEccC
Confidence            35899999999999999999999 79999999964

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.22  E-value=2.3e-06  Score=90.61  Aligned_cols=37  Identities=30%  Similarity=0.554  Sum_probs=33.7

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |..+|||||||||++|+++|.+|++ .|++|+|+|+.+
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~-~G~~V~liE~~~   39 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYK   39 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            4457999999999999999999999 899999999964

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.21  E-value=4.1e-06  Score=89.62  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=39.0

Q ss_pred             hHHhhHhhhhC-CCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760          268 AKDYIDPIKKR-CNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       268 ~~~~L~~~~~r-~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa  327 (511)
                      ...+|...+++ .|++++.+ .|++|..+++ +.+++|++. +|+  +++|+ -||.|+|.
T Consensus       177 l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~-g~~~~v~~~-~g~--~i~ad-~vV~AdG~  231 (526)
T 2pyx_A          177 FSQLLTEHCTQKLGVTHIRD-HVSQIINNQH-GDIEKLITK-QNG--EISGQ-LFIDCTGA  231 (526)
T ss_dssp             HHHHHHHHHHHTSCCEEEEC-CEEEEEECTT-SCEEEEEES-SSC--EEECS-EEEECSGG
T ss_pred             HHHHHHHHHHhcCCCEEEEe-EEEEEEecCC-CcEEEEEEC-CCC--EEEcC-EEEECCCc
Confidence            44456566666 89999999 6999988653 556666654 333  48897 69999997

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.21  E-value=6.3e-06  Score=88.74  Aligned_cols=54  Identities=13%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             hHHhhHhhhhCC-CcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760          268 AKDYIDPIKKRC-NLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       268 ~~~~L~~~~~r~-gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa  327 (511)
                      ...+|...+++. |++++.+ +|++|..+++ +++++|++. +|+  ++.|+ .||+|+|.
T Consensus       196 l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~-g~~~~v~~~-~G~--~i~ad-~vI~A~G~  250 (550)
T 2e4g_A          196 VADFLRRFATEKLGVRHVED-RVEHVQRDAN-GNIESVRTA-TGR--VFDAD-LFVDCSGF  250 (550)
T ss_dssp             HHHHHHHHHHHHSCCEEEEC-CEEEEEECTT-SCEEEEEET-TSC--EEECS-EEEECCGG
T ss_pred             HHHHHHHHHHhcCCcEEEEC-eEeEEEEcCC-CCEEEEEEC-CCC--EEECC-EEEECCCC
Confidence            444565556666 9999999 9999988653 567777654 343  68897 69999996

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.19  E-value=3.5e-06  Score=83.98  Aligned_cols=33  Identities=33%  Similarity=0.426  Sum_probs=31.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      ..+||+|||||++|+++|..|++ .|++|+|+|+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~-~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAAR-AELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEec
Confidence            35899999999999999999999 7999999998

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.19  E-value=2e-06  Score=91.17  Aligned_cols=35  Identities=31%  Similarity=0.686  Sum_probs=31.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||++|+++|.+|++ .|++|+|+|+.+
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~   58 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQ-LGMKVAVVEKRS   58 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            46999999999999999999999 899999999874

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.18  E-value=8.2e-06  Score=87.52  Aligned_cols=55  Identities=13%  Similarity=0.099  Sum_probs=39.8

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~  328 (511)
                      ...+|...+++.|++++.+ +|++|..+++ +.+++|.+. +|+  +++|+ .||.|+|+.
T Consensus       167 l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-g~~~~v~~~-~g~--~i~ad-~vV~A~G~~  221 (538)
T 2aqj_A          167 VADFLKRWAVERGVNRVVD-EVVDVRLNNR-GYISNLLTK-EGR--TLEAD-LFIDCSGMR  221 (538)
T ss_dssp             HHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEET-TSC--EECCS-EEEECCGGG
T ss_pred             HHHHHHHHHHHCCCEEEEe-eEeEEEEcCC-CcEEEEEEC-CCc--EEEeC-EEEECCCCc
Confidence            4445656666789999999 8999988653 556667653 343  68897 699999973

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.18  E-value=1.8e-06  Score=92.01  Aligned_cols=63  Identities=16%  Similarity=0.154  Sum_probs=44.7

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCC-----cEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK-----KACGVLATI--KGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~-----ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ...||...+++.+..|..+++|++|..++.++     ...-|++.+  .++..++.|+ .||+|+|.  .|.+
T Consensus       147 ~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar-~vVlatG~--~P~i  216 (501)
T 4b63_A          147 FEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTR-KVVIAIGG--TAKM  216 (501)
T ss_dssp             HHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEE-EEEECCCC--EECC
T ss_pred             HHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeC-EEEECcCC--CCCC
Confidence            44588888888888899999999998765321     123344443  3556688896 79999996  5643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.17  E-value=3.9e-06  Score=84.04  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +...+||+|||||++|+++|..|++ .|++|+|+|+.
T Consensus        11 ~~~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   46 (335)
T 2a87_A           11 HHPVRDVIVIGSGPAGYTAALYAAR-AQLAPLVFEGT   46 (335)
T ss_dssp             CCCCEEEEEECCHHHHHHHHHHHHH-TTCCCEEECCS
T ss_pred             cCCcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            4457999999999999999999999 79999999965

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.4e-06  Score=87.28  Aligned_cols=38  Identities=32%  Similarity=0.447  Sum_probs=33.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhc-CCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe-~~G~~VLVLEaG~~~  105 (511)
                      .++||+|||||+||++||++|++ +.|++|+|+||++..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            47899999999999999999985 379999999998754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.16  E-value=5.1e-06  Score=88.24  Aligned_cols=35  Identities=29%  Similarity=0.498  Sum_probs=32.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||||||||++|+++|.+|++ . ++|+|+|+++.
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~-~-~~V~vie~~~~  141 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQ-Y-LTVALIEERGW  141 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTT-T-CCEEEECTTSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHh-c-CCEEEEeCCCC
Confidence            46899999999999999999999 6 99999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.15  E-value=5.5e-06  Score=86.90  Aligned_cols=33  Identities=39%  Similarity=0.671  Sum_probs=31.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +|||||||||++|+++|.+|++ .|++|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            5899999999999999999999 79999999987

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.14  E-value=8e-06  Score=90.37  Aligned_cols=39  Identities=31%  Similarity=0.499  Sum_probs=35.1

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ....+||||||||++|+++|..|++ .|++|+|+|+++..
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~-~G~~V~liE~~~~~  426 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGV-RGYDVVLAEAGRDL  426 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             ccccceEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            4457999999999999999999999 79999999998653

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.14  E-value=1.1e-06  Score=93.33  Aligned_cols=42  Identities=26%  Similarity=0.432  Sum_probs=36.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcc
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYL  108 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~  108 (511)
                      ..++||||||||++||+||++|++..|++|+||||.+..+..
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~   49 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGL   49 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCC
Confidence            346999999999999999999997359999999999877643

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.14  E-value=1.6e-06  Score=91.04  Aligned_cols=42  Identities=24%  Similarity=0.429  Sum_probs=37.8

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      .+..++||||||||.+|+++|.+|++ .|++|+||||.+..+.
T Consensus         7 ~~~~~~dvvVIGaG~~GL~aA~~La~-~G~~V~vlE~~~~~GG   48 (453)
T 2bcg_G            7 TIDTDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQDHYGG   48 (453)
T ss_dssp             CCCCBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSCG
T ss_pred             hccccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCCCc
Confidence            45567999999999999999999999 8999999999987653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.11  E-value=7.6e-06  Score=87.09  Aligned_cols=54  Identities=13%  Similarity=0.025  Sum_probs=40.0

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa  327 (511)
                      ....|...+++.|++++.+ +|++|..+++ +++++|++. +|+  +++|+ -||.|+|+
T Consensus       175 l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~-~~~~~v~~~-~g~--~~~ad-~vV~A~G~  228 (511)
T 2weu_A          175 VARYLSEYAIARGVRHVVD-DVQHVGQDER-GWISGVHTK-QHG--EISGD-LFVDCTGF  228 (511)
T ss_dssp             HHHHHHHHHHHTTCEEEEC-CEEEEEECTT-SCEEEEEES-SSC--EEECS-EEEECCGG
T ss_pred             HHHHHHHHHHHCCCEEEEC-eEeEEEEcCC-CCEEEEEEC-CCC--EEEcC-EEEECCCc
Confidence            3445655566789999999 9999988553 566777654 343  68897 69999997

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.10  E-value=1.6e-05  Score=88.77  Aligned_cols=39  Identities=33%  Similarity=0.477  Sum_probs=34.8

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+||||||||++|+++|..|++ .|++|+|||+.+...
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~g  372 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHN-FGIKVTVLEAKDRIG  372 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEeccccee
Confidence            346999999999999999999999 799999999986543

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.09  E-value=9.8e-06  Score=84.93  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .||||||||++|+++|.+|++. +|.+|+|+|+++.
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   38 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQAT   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5999999999999999999982 4899999999863

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.08  E-value=4.5e-06  Score=88.05  Aligned_cols=36  Identities=25%  Similarity=0.556  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+||+||||||++|+++|.+|++ .|++|+|+|+.+.
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~~   40 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQ-LGFKTVCIEKNET   40 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            46999999999999999999999 7999999999853

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.06  E-value=1.1e-05  Score=87.38  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=32.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      ...||||||||++|+++|.+|++. +|.+|+|+|+.+.
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~   72 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEY   72 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            357999999999999999999982 4899999999864

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.06  E-value=4.9e-05  Score=79.17  Aligned_cols=37  Identities=32%  Similarity=0.588  Sum_probs=32.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhc--CCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSE--IPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe--~~G~~VLVLEaG~~~  105 (511)
                      ..||||||||++|+.+|.+|++  .+|.+|+|+|+.+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999997  258999999998753

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.05  E-value=2.5e-06  Score=86.47  Aligned_cols=37  Identities=16%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |..++||||||||++|+++|++|++ .|++|+||||..
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~-~G~~V~vle~~~   39 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILAR-KGYSVHILARDL   39 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHh-CCCEEEEEeccC
Confidence            3457999999999999999999999 899999999975

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.00  E-value=2.5e-05  Score=79.76  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=31.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|+|||||++|+++|..|++ .|++|+|+||.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~-~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRK-HGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            369999999999999999999 8999999999754

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.00  E-value=2.3e-05  Score=82.73  Aligned_cols=36  Identities=19%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .+||||||||++|+++|.+|++. +|.+|+|+|+.+.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   72 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEI   72 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            37999999999999999999983 4899999999753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.98  E-value=1.6e-05  Score=83.65  Aligned_cols=36  Identities=17%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      ..||||||||++|+++|.+|++. +|.+|+|+|+.+.
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~   39 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASR   39 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCc
Confidence            36999999999999999999982 4999999999864

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.97  E-value=1.5e-05  Score=83.51  Aligned_cols=36  Identities=28%  Similarity=0.720  Sum_probs=32.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .+||||||||++|+++|.+|++. ++.+|+|+|+.+.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~   39 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEW   39 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCc
Confidence            47999999999999999999983 4899999999853

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.96  E-value=1.6e-05  Score=91.20  Aligned_cols=36  Identities=31%  Similarity=0.543  Sum_probs=33.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||||||+|+||+.+|.+|++ .|++|+|+|+.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~-~G~~V~lie~~~~  162 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASR-SGARVMLLDERAE  162 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            46899999999999999999999 7999999999853

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.96  E-value=2.2e-05  Score=82.12  Aligned_cols=34  Identities=26%  Similarity=0.525  Sum_probs=30.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~  103 (511)
                      +||||||||++|+.+|.+|++. +|.+|+|+|+.+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~   35 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCC
Confidence            4899999999999999999982 399999999975

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.94  E-value=2.6e-05  Score=81.65  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~  103 (511)
                      +|+||||||++|+++|.+|++. +|.+|+|+|+.+
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~   35 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMND   35 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC
Confidence            5899999999999999999982 399999999975

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.94  E-value=4.7e-06  Score=86.34  Aligned_cols=35  Identities=43%  Similarity=0.668  Sum_probs=32.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      |||||||||++|+++|++|++ .|++|+||||.+..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~-~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            899999999999999999999 79999999997654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.92  E-value=6.1e-06  Score=85.16  Aligned_cols=41  Identities=27%  Similarity=0.450  Sum_probs=36.5

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCCCCCCc
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGHYFNY  107 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG~~~~~  107 (511)
                      |..++||||||||++|+++|++|++ . |++|+|||+.+....
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~-~~g~~v~v~E~~~~~GG   45 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVAT-QLDKRVLVLERRPHIGG   45 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHH-HSCCCEEEECSSSSSSG
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCCC
Confidence            4557999999999999999999999 6 999999999976643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.91  E-value=2.3e-05  Score=83.06  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCC---CeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPH---WKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G---~~VLVLEaG~  103 (511)
                      .+||||||||++|+++|.+|++ .|   .+|+|+|+.+
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~-~g~~~~~V~lie~~~   71 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLT-NYGDANEIVVFDQNS   71 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-HHGGGSEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-cCCCCCeEEEEECCC
Confidence            5899999999999999999998 56   9999999975

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.91  E-value=3.5e-05  Score=79.39  Aligned_cols=34  Identities=15%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhc-C-CCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSE-I-PHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe-~-~G~~VLVLEaG~  103 (511)
                      .||||||||++|+.+|.+|++ . .|.+|+|||+.+
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR   37 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC
Confidence            379999999999999999987 1 589999999985

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.89  E-value=2.5e-05  Score=84.15  Aligned_cols=35  Identities=29%  Similarity=0.605  Sum_probs=31.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .||+|||||++|+++|.+|++. ++.+|+|+|+.+.
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~   37 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEY   37 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCC
Confidence            4799999999999999999983 4899999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.87  E-value=6.8e-06  Score=86.99  Aligned_cols=38  Identities=18%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             ccC-CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           65 DLL-LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        65 ~~~-~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|. .+|||||||||++|+++|.+|++ .|++|+|||++.
T Consensus        21 ~M~~~~~DVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~   59 (484)
T 3o0h_A           21 SMGSFDFDLFVIGSGSGGVRAARLAGA-LGKRVAIAEEYR   59 (484)
T ss_dssp             ---CCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCcCCCCEEEECcCHHHHHHHHHHHh-CcCEEEEEeCCC
Confidence            344 46999999999999999999999 899999999953

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.83  E-value=5.2e-05  Score=78.90  Aligned_cols=63  Identities=19%  Similarity=0.266  Sum_probs=43.9

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ...++....++.|+++++++.|++|.  +  +   ++.+.. ++...++.++ .||+++|. ..|.++..+|.
T Consensus       202 ~~~~l~~~l~~~GV~~~~~~~v~~v~--~--~---~~~~~~~~g~~~~i~~d-~vi~~~G~-~~~~~~~~~~~  265 (430)
T 3hyw_A          202 SKRLVEDLFAERNIDWIANVAVKAIE--P--D---KVIYEDLNGNTHEVPAK-FTMFMPSF-QGPEVVASAGD  265 (430)
T ss_dssp             HHHHHHHHHHHTTCEEECSCEEEEEC--S--S---EEEEECTTSCEEEEECS-EEEEECEE-ECCHHHHTTCT
T ss_pred             HHHHHHHHHHhCCeEEEeCceEEEEe--C--C---ceEEEeeCCCceEeecc-eEEEeccC-CCchHHHhccc
Confidence            33456666678899999999999984  3  2   344443 3455589998 69999985 34567777764

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.81  E-value=1.2e-05  Score=85.85  Aligned_cols=38  Identities=26%  Similarity=0.452  Sum_probs=34.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+||||||||++|+++|.+|++ .|++|+|||+.+...
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~~G   40 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDRVG   40 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSSSB
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCCCC
Confidence            46899999999999999999999 799999999987654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.79  E-value=1.2e-05  Score=83.07  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=32.8

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~  104 (511)
                      ..+||||||||++|+++|..|++ .|.+ |+||||.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQ-AGIGKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-CCCCeEEEEECCCC
Confidence            46899999999999999999999 8999 999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.79  E-value=1.7e-05  Score=81.68  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=35.8

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ....+||+|||||++|+++|.+|++ .|.+|+|||+.+...
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSS
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHH-CCCceEEEeccCCCC
Confidence            3457999999999999999999999 799999999987654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.78  E-value=1.6e-05  Score=81.15  Aligned_cols=37  Identities=38%  Similarity=0.592  Sum_probs=33.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ++||+|||||++|+++|.+|++ .|++|+|+|+++...
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~-~g~~v~v~E~~~~~G   37 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRNHIG   37 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG-GTCCEEEECSSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCCC
Confidence            3799999999999999999999 799999999987654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.78  E-value=1.9e-05  Score=82.42  Aligned_cols=41  Identities=27%  Similarity=0.538  Sum_probs=36.9

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      +|..++|+||||+|.+|+++|.+|++ .|++|+|+|+.+...
T Consensus         2 ~~~~~~~v~iiG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~g   42 (433)
T 1d5t_A            2 HMDEEYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPYYG   42 (433)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCcc
Confidence            35668999999999999999999999 899999999987654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.76  E-value=1.9e-05  Score=83.37  Aligned_cols=40  Identities=25%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      +...+||+|||||++|+++|++|++ .|++|+|+|+.+...
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~-~g~~v~v~E~~~~~G   47 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRPG   47 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSSC
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeccCCCC
Confidence            4457899999999999999999999 899999999987654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.76  E-value=2e-05  Score=81.41  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=34.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~~~  106 (511)
                      ..+||||||||++|+++|++|++ .| ++|+|+|+.+...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~-~g~~~v~v~E~~~~~G   43 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ-AGFHDYTILERTDHVG   43 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSSCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCCcEEEEECCCCCC
Confidence            46899999999999999999999 79 8999999987654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.75  E-value=1.9e-05  Score=83.06  Aligned_cols=39  Identities=26%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+||||||||++|+++|+.|++ .|.+|+|||+.+...
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~-~g~~v~v~E~~~~~G   52 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARLG   52 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHT-TTCCEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCCC
Confidence            456899999999999999999999 799999999987654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.73  E-value=1.3e-05  Score=80.73  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=31.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCC------CeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPH------WKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G------~~VLVLEaG~~  104 (511)
                      .||||||||++|+++|++|++ .|      .+|+|||++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~-~G~~~~p~~~V~vlE~~~~   40 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHE-RYHSVLQPLDIKVYADRFT   40 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HHTTTSSSCEEEEEESSCG
T ss_pred             CcEEEECCCHHHHHHHHHHHH-hccccCCCceEEEEECCCC
Confidence            389999999999999999999 66      99999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.73  E-value=0.00011  Score=75.34  Aligned_cols=36  Identities=25%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +...|+|||||+||+.+|.+|+. .+.+|+|+|+.+.
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~-~~~~itlie~~~~   43 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALG-KCDDITMINSEKY   43 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTT-TCSCEEEECSSSS
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhC-CCCEEEEEECCCC
Confidence            45779999999999999999966 8999999999854

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.73  E-value=1.3e-05  Score=84.39  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=33.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+|||||||||++|+++|.+|++ .|++|+|+|+++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~~   37 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKG   37 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-HTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCEEEEEeCCCc
Confidence            46999999999999999999999 7999999999863

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.72  E-value=2.2e-05  Score=82.36  Aligned_cols=36  Identities=22%  Similarity=0.452  Sum_probs=33.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGHYFN  106 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~~~~  106 (511)
                      +||||||||++|+++|++|++ .|.  +|+|||+.+...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~-~G~~~~V~vlEa~~~~G   40 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSR-APCPPKVVLVESSERLG   40 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHT-SSSCCEEEEECSSSSSB
T ss_pred             ceEEEECCcHHHHHHHHHHHh-CCCCCcEEEEeCCCCCC
Confidence            699999999999999999999 799  999999987654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.72  E-value=2.1e-05  Score=80.14  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+||||||||++|+++|..|++ .|.+|+|+|+.+.
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~-~G~~v~viE~~~~   45 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQ-NGWDVRLHEKSSE   45 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            5899999999999999999999 8999999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.71  E-value=1.8e-05  Score=84.40  Aligned_cols=39  Identities=31%  Similarity=0.354  Sum_probs=35.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCCCCc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYFNY  107 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~~~~  107 (511)
                      ..+||||||||++|+++|.+|++ .| .+|+|||+.+....
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~-~G~~~V~VlEa~~riGG   46 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQ-NGIQDCLVLEARDRVGG   46 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHH-TTCCSEEEECSSSSSBT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCCCCC
Confidence            35899999999999999999999 79 99999999876643

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.71  E-value=1.3e-05  Score=83.64  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCC------CeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPH------WKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G------~~VLVLEaG~~~~  106 (511)
                      .+||||||||++|+++|++|++ .|      ++|+|||+.+...
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~-~G~~~~~~~~V~vlEa~~~~G   47 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEK-EIKEKNLPLELTLVEASPRVG   47 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-HHTTTTCSEEEEEECSSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-hccccCCCCCEEEEECCCCCC
Confidence            4899999999999999999999 78      9999999986654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.70  E-value=2.2e-05  Score=84.20  Aligned_cols=35  Identities=29%  Similarity=0.674  Sum_probs=32.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +||+||||||++|.++|.++|+ .|.+|+|+|+...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~-~G~kValIE~~~~   76 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAA-HGARVLLFDYVKP   76 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT-TTCCEEEECCCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            5999999999999999999999 8999999998653

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.70  E-value=1.6e-05  Score=83.82  Aligned_cols=36  Identities=28%  Similarity=0.599  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...|||||||||++|+++|.+|++ .|++|+|+|++.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~-~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAE-LGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            357999999999999999999999 799999999874

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.70  E-value=2.8e-05  Score=82.37  Aligned_cols=40  Identities=20%  Similarity=0.211  Sum_probs=34.6

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      |...+||||||||++|+++|++|++ .|++|+|+|+.+...
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~G   49 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAG   49 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHT-TSCEEEEECSSSSSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCCC
Confidence            4557999999999999999999999 799999999987764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.69  E-value=2.9e-05  Score=82.00  Aligned_cols=37  Identities=35%  Similarity=0.552  Sum_probs=34.1

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ++||||||||++|+++|.+|++ .|++|+|||+.+...
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~G   75 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRIG   75 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSBSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHH-CCCCEEEEeCCCCCC
Confidence            3999999999999999999999 799999999987654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.66  E-value=3.3e-05  Score=78.96  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC-CCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG-HYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG-~~~  105 (511)
                      ...+||+|||||++|+++|++|++ .|++|+|+|+. +..
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~-~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTR-AGHDVTILEANANRV   80 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHH-TSCEEEEECSCSSCC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH-CCCcEEEEecccccc
Confidence            456899999999999999999999 79999999998 654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.66  E-value=2.6e-05  Score=81.32  Aligned_cols=38  Identities=34%  Similarity=0.535  Sum_probs=34.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .++||||||||++|+++|++|++ .|++|+|||+.+...
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~G   41 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRVG   41 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCCC
Confidence            36899999999999999999999 799999999987654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.64  E-value=2.6e-05  Score=81.99  Aligned_cols=33  Identities=24%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +|||||||||++|+++|.+|++ .|++|+|+|++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~-~G~~V~liEk~   37 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAA-LGKKVAIAEEF   37 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            6999999999999999999999 79999999994

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.63  E-value=2.9e-05  Score=81.35  Aligned_cols=36  Identities=36%  Similarity=0.539  Sum_probs=32.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..+||+||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (450)
T 1ges_A            2 TKHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   37 (450)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHh-CCCeEEEEcCCC
Confidence            346999999999999999999999 899999999974

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.61  E-value=3e-05  Score=81.56  Aligned_cols=36  Identities=28%  Similarity=0.527  Sum_probs=33.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         2 ~~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (463)
T 2r9z_A            2 TQHFDLIAIGGGSGGLAVAEKAAA-FGKRVALIESKA   37 (463)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CccCcEEEECCCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            346999999999999999999999 899999999974

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.60  E-value=3.6e-05  Score=81.36  Aligned_cols=56  Identities=9%  Similarity=-0.003  Sum_probs=40.3

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC--CeEEEEEeCcEEEEccCCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--GIDHKILARKEVILSAGAF  328 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~--g~~~~v~A~k~VILAAGa~  328 (511)
                      ..+....++.|++|++++.|++|..+++ +++ .|++.+.  ++..++.++ .||+|+|--
T Consensus       231 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~-~v~~~~~~~~~~~~~~~D-~vi~a~G~~  288 (483)
T 3dgh_A          231 ELVAASMEERGIPFLRKTVPLSVEKQDD-GKL-LVKYKNVETGEESEDVYD-TVLWAIGRK  288 (483)
T ss_dssp             HHHHHHHHHTTCCEEETEEEEEEEECTT-SCE-EEEEEETTTCCEEEEEES-EEEECSCEE
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEcCC-CcE-EEEEecCCCCceeEEEcC-EEEECcccc
Confidence            3455556778999999999999987553 333 3666543  345578998 699999973

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.59  E-value=2.9e-05  Score=80.86  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=31.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||||||||++|+++|+.|++ .|++|+|||+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~-~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQ-HDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence            4799999999999999999999 899999999985

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.59  E-value=3.5e-05  Score=81.68  Aligned_cols=34  Identities=26%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~-~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKK-HTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-TCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence            5999999999999999999999 899999999975

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.57  E-value=4e-05  Score=81.84  Aligned_cols=37  Identities=30%  Similarity=0.537  Sum_probs=33.7

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +..+|||||||||++|+++|.+|++ .|++|+|+|+.+
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~-~G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQ-YGKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeccC
Confidence            3457999999999999999999999 799999999964

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.57  E-value=3.6e-05  Score=81.26  Aligned_cols=36  Identities=36%  Similarity=0.615  Sum_probs=33.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..+|||||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~-~g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAAS-YGAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TSCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            357999999999999999999999 899999999974

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.57  E-value=4.3e-05  Score=80.33  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...+||||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         2 ~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~~   37 (467)
T 1zk7_A            2 EPPVQVAVIGSGGAAMAAALKAVE-QGAQVTLIERGT   37 (467)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            356999999999999999999999 799999999984

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.56  E-value=0.00044  Score=70.53  Aligned_cols=58  Identities=10%  Similarity=0.048  Sum_probs=40.7

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..++.|+++++++.|++|..++  + ...|++ .+++  ++.++ .||+|+|..-...++..+|+
T Consensus       196 ~l~~~gv~i~~~~~v~~i~~~~--~-~~~v~~-~~g~--~i~~d-~vv~a~G~~p~~~l~~~~g~  253 (384)
T 2v3a_A          196 GLEGLGVRFHLGPVLASLKKAG--E-GLEAHL-SDGE--VIPCD-LVVSAVGLRPRTELAFAAGL  253 (384)
T ss_dssp             HHHTTTCEEEESCCEEEEEEET--T-EEEEEE-TTSC--EEEES-EEEECSCEEECCHHHHHTTC
T ss_pred             HHHHcCCEEEeCCEEEEEEecC--C-EEEEEE-CCCC--EEECC-EEEECcCCCcCHHHHHHCCC
Confidence            3456799999999999998764  2 223433 2343  68898 69999997544457777775

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.55  E-value=4e-05  Score=81.11  Aligned_cols=35  Identities=20%  Similarity=0.450  Sum_probs=32.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+|||||||||++|+++|.+|++ .|.+|+|+|+.+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~-~G~~V~liEk~~   39 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQ-LGKKVAVADYVE   39 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEEecc
Confidence            46999999999999999999999 799999999843

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.55  E-value=3.5e-05  Score=81.21  Aligned_cols=37  Identities=22%  Similarity=0.341  Sum_probs=33.6

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+|||||||||++|+++|.+|++ .|++|+|+|+.+.
T Consensus         3 ~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~~   39 (478)
T 1v59_A            3 NKSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRGK   39 (478)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            346999999999999999999999 7999999999654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.55  E-value=0.00012  Score=76.46  Aligned_cols=33  Identities=27%  Similarity=0.570  Sum_probs=28.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~  103 (511)
                      .|||||||+||+++|.+|++. ...+|+|+|+++
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~   35 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR   35 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            389999999999999999882 336899999975

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.52  E-value=4.7e-05  Score=79.91  Aligned_cols=36  Identities=33%  Similarity=0.454  Sum_probs=33.1

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~~  105 (511)
                      .+||||||||++|+++|++|++ .|  .+|+|||+.+..
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~-~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAER-AFPDLNITLLEAGERL   41 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHH-HCTTSEEEEECSSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHH-hCCCCCEEEEECCCCC
Confidence            4899999999999999999999 68  999999997654

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.51  E-value=4.8e-05  Score=77.65  Aligned_cols=35  Identities=29%  Similarity=0.622  Sum_probs=31.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCC--CCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~--G~~VLVLEaG~~~  105 (511)
                      .||||||||++|+++|..|++ .  |.+|+|+||.+..
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~-~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQ-ARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCCCCEEEEECCCCC
Confidence            389999999999999999998 5  9999999998653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.48  E-value=9.2e-05  Score=75.90  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=33.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ++||+|||||++|+++|.+|++ .|++|+|+|+.+...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~-~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCcEEEEEecCCcC
Confidence            4899999999999999999999 799999999987654

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.47  E-value=6.9e-05  Score=76.34  Aligned_cols=34  Identities=26%  Similarity=0.207  Sum_probs=32.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +||||||||.||+.+|+.|++ .|.+|+|+|+.+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~-~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR-LGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            699999999999999999999 8999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.46  E-value=6.3e-05  Score=79.06  Aligned_cols=36  Identities=25%  Similarity=0.517  Sum_probs=33.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      +|||||||||++|+++|.+|++ .|++|+|+|+.+..
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~~~~   37 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ-LGMKTACVEKRGAL   37 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence            5899999999999999999999 79999999998643

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.46  E-value=7.3e-05  Score=79.00  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+||||||||++|+++|..|++ .|.+|+|||+.+...
T Consensus        31 ~~~~~v~IiGaG~~Gl~aA~~l~~-~g~~v~vlE~~~~~g   69 (498)
T 2iid_A           31 SNPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPG   69 (498)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHH-HTCEEEEECSSSSSB
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEECCCCCC
Confidence            346899999999999999999999 799999999987654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.46  E-value=6.7e-05  Score=79.65  Aligned_cols=34  Identities=35%  Similarity=0.679  Sum_probs=32.2

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +|||||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            4899999999999999999999 799999999985

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.45  E-value=6.6e-05  Score=78.60  Aligned_cols=35  Identities=34%  Similarity=0.619  Sum_probs=32.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +|||||||||++|+++|.+|++ .|++|+|+|+.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQ-LGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            4899999999999999999999 7999999999854

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.44  E-value=9.3e-05  Score=78.28  Aligned_cols=39  Identities=33%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCCCCc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYFNY  107 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~~~~  107 (511)
                      ..+||+|||||++|+++|++|++ .| .+|+|+|+.+....
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~-~g~~~v~v~E~~~~~GG   47 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTE-LGYKNWHLYECNDTPGG   47 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHH-TTCCSEEEEESSSSSSG
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH-cCCCCEEEEeCCCCCCC
Confidence            46899999999999999999999 67 79999999876643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.43  E-value=0.0013  Score=64.73  Aligned_cols=56  Identities=9%  Similarity=0.088  Sum_probs=41.5

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC---CeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK---GIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~---g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      +++.|+++++++.|++|..++  +++.+|++...   ++..++.++ .||+|+|.--.+.++
T Consensus       194 l~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~g~~~~i~~D-~vv~a~G~~p~~~~~  252 (320)
T 1trb_A          194 VENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF  252 (320)
T ss_dssp             HHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECS-EEEECSCEEESCGGG
T ss_pred             cccCCeEEEcCceeEEEEcCC--CceEEEEEEeccCCCceEEEEcC-EEEEEeCCCCChHHh
Confidence            456799999999999998664  57888988752   444478998 699999974333343

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.41  E-value=7.2e-05  Score=78.60  Aligned_cols=37  Identities=30%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      .+|||||||||++|+++|.+|++ .|++|+|+|+.+..
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~-~g~~V~liE~~~~~   41 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGAL   41 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence            46999999999999999999999 79999999998643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.40  E-value=0.0009  Score=67.26  Aligned_cols=59  Identities=14%  Similarity=-0.010  Sum_probs=43.1

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      ++.|+++++++.|++|..++  +++.+|++.. +|+..++.++ .||+|+|.-..+.+|...|
T Consensus       213 ~~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~  272 (360)
T 3ab1_A          213 ANGTIDVYLETEVASIEESN--GVLTRVHLRSSDGSKWTVEAD-RLLILIGFKSNLGPLARWD  272 (360)
T ss_dssp             HHTSEEEESSEEEEEEEEET--TEEEEEEEEETTCCEEEEECS-EEEECCCBCCSCGGGGGSS
T ss_pred             hcCceEEEcCcCHHHhccCC--CceEEEEEEecCCCeEEEeCC-EEEECCCCCCCHHHHHhhc
Confidence            45689999999999998765  6777888762 4544578998 6999999643334554444

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.39  E-value=0.00054  Score=71.18  Aligned_cols=58  Identities=21%  Similarity=0.339  Sum_probs=42.7

Q ss_pred             hhCCCcEEEeCceEEEEEE--cCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          276 KKRCNLTVKDSSFVKKILI--DPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~--d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++.|+++++++.|++|..  ++  +++.+|++. +|+  ++.++ .||+|+|..-...++..+|+
T Consensus       201 l~~~GV~i~~~~~v~~i~~~~~~--~~v~~v~~~-~G~--~i~~D-~Vv~a~G~~p~~~l~~~~gl  260 (431)
T 1q1r_A          201 HREAGVDIRTGTQVCGFEMSTDQ--QKVTAVLCE-DGT--RLPAD-LVIAGIGLIPNCELASAAGL  260 (431)
T ss_dssp             HHHHTCEEECSCCEEEEEECTTT--CCEEEEEET-TSC--EEECS-EEEECCCEEECCHHHHHTTC
T ss_pred             HHhCCeEEEeCCEEEEEEeccCC--CcEEEEEeC-CCC--EEEcC-EEEECCCCCcCcchhhccCC
Confidence            3456999999999999986  33  567677654 343  68898 69999997544457777775

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.38  E-value=8.7e-05  Score=77.91  Aligned_cols=33  Identities=33%  Similarity=0.649  Sum_probs=31.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      +|||||||||++|+++|.+|++ .|++|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~-~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ-LGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCC
Confidence            5899999999999999999999 79999999997

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.38  E-value=7e-05  Score=79.45  Aligned_cols=34  Identities=18%  Similarity=0.367  Sum_probs=32.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCC---CCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIP---HWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~---G~~VLVLEaG~  103 (511)
                      +|||||||||++|+++|.+|++ .   |++|+|+|+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~-~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAAT-SHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-HCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCCcCEEEEEeCCC
Confidence            4899999999999999999998 5   99999999986

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.34  E-value=0.00017  Score=75.71  Aligned_cols=38  Identities=21%  Similarity=0.390  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+||+|||||++|+++|..|++ .|++|+|+|+.+..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~-~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRA-KGYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            356899999999999999999999 79999999998754

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.33  E-value=0.00062  Score=67.20  Aligned_cols=59  Identities=25%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      +.|++++++++|++|..++  +++.+|++..  +|+..++.++ .||+|+|...++.+|..+|+
T Consensus       202 ~~gv~i~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~gl  262 (319)
T 3cty_A          202 KRNIPYIMNAQVTEIVGDG--KKVTGVKYKDRTTGEEKLIETD-GVFIYVGLIPQTSFLKDSGV  262 (319)
T ss_dssp             HTTCCEECSEEEEEEEESS--SSEEEEEEEETTTCCEEEECCS-EEEECCCEEECCGGGTTSCC
T ss_pred             cCCcEEEcCCeEEEEecCC--ceEEEEEEEEcCCCceEEEecC-EEEEeeCCccChHHHhhccc
Confidence            4689999999999998664  5688888874  5665578897 79999997444445554443

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.32  E-value=0.0023  Score=63.15  Aligned_cols=55  Identities=11%  Similarity=0.078  Sum_probs=42.1

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      ++.|+++++++.|++|..++  +++++|++..  +++..++.++ .||+|+|..-++.++
T Consensus       220 ~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  276 (338)
T 3itj_A          220 KNEKIEILYNTVALEAKGDG--KLLNALRIKNTKKNEETDLPVS-GLFYAIGHTPATKIV  276 (338)
T ss_dssp             HCTTEEEECSEEEEEEEESS--SSEEEEEEEETTTTEEEEEECS-EEEECSCEEECCGGG
T ss_pred             hcCCeEEeecceeEEEEccc--CcEEEEEEEECCCCceEEEEeC-EEEEEeCCCCChhHh
Confidence            34599999999999998765  6788898876  4555688998 699999974333343

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.32  E-value=0.00013  Score=76.52  Aligned_cols=38  Identities=39%  Similarity=0.547  Sum_probs=33.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHYFN  106 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~~~  106 (511)
                      ..+||+|||+|++|+++|++|++ .|. +|+|+|+++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~-~g~~~v~~~e~~~~~g   41 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDHIG   41 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSSSB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-cCCCceEEEeCCCCCC
Confidence            46899999999999999999999 798 899999987653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.30  E-value=0.00011  Score=77.06  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=32.2

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..||+||||||++|+++|.+|++ .|++|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEccCC
Confidence            35999999999999999999999 799999999943

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.29  E-value=0.00012  Score=76.79  Aligned_cols=34  Identities=44%  Similarity=0.822  Sum_probs=32.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||||+||+++|.+|++ .|++|+|+|+.+
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~-~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ-LGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            6999999999999999999999 799999999986

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.28  E-value=0.0017  Score=67.95  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  202 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRR-LGAEVTLIEYMP  202 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEEcCC
Confidence            469999999999999999999 799999999875

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.26  E-value=0.0028  Score=62.03  Aligned_cols=59  Identities=24%  Similarity=0.187  Sum_probs=45.9

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ++.|+++++++.|++|..+   +++.+|++.+  +|+..++.++ .||+|+|.--+..+|..+|+
T Consensus       201 ~~~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~g~  261 (323)
T 3f8d_A          201 KKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVN-GVFIEIGFDPPTDFAKSNGI  261 (323)
T ss_dssp             TCTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEECCHHHHHHTTC
T ss_pred             hCCCcEEEeCCEEEEEecc---CceeEEEEEECCCCceEEEEcC-EEEEEECCCCChhHHhhcCe
Confidence            4569999999999999765   4677788775  3555578998 69999998666578877775

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.25  E-value=0.00019  Score=73.27  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~  103 (511)
                      ..+||||||||++|+++|.+|++ .|  .+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRK-LDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHT-TCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHh-hCCCCCEEEEECCC
Confidence            46999999999999999999999 66  5799999874

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.25  E-value=0.0028  Score=61.94  Aligned_cols=53  Identities=17%  Similarity=0.155  Sum_probs=40.5

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      .|+++++++.|++|.-++  +++.+|++.+  +++..++.++ .||+|+|...++.+|
T Consensus       193 ~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l  247 (310)
T 1fl2_A          193 KNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELA-GIFVQIGLLPNTNWL  247 (310)
T ss_dssp             TTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             CCeEEecCCceEEEEcCC--CcEEEEEEEECCCCcEEEEEcC-EEEEeeCCccCchHH
Confidence            699999999999998654  6788888875  3555678998 699999963333344

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.23  E-value=0.0032  Score=61.62  Aligned_cols=56  Identities=9%  Similarity=0.036  Sum_probs=41.5

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLML  336 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~  336 (511)
                      +.|+++++++.|++|..++  +++.+|++..  +|+..++.++ .||+|+|.--+..+|..
T Consensus       191 ~~gv~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~  248 (311)
T 2q0l_A          191 NDKIEFLTPYVVEEIKGDA--SGVSSLSIKNTATNEKRELVVP-GFFIFVGYDVNNAVLKQ  248 (311)
T ss_dssp             CTTEEEETTEEEEEEEEET--TEEEEEEEEETTTCCEEEEECS-EEEECSCEEECCGGGBC
T ss_pred             CCCeEEEeCCEEEEEECCC--CcEeEEEEEecCCCceEEEecC-EEEEEecCccChhhhhc
Confidence            4699999999999998764  4677788874  5665678998 69999997333334443

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.22  E-value=0.00025  Score=77.02  Aligned_cols=42  Identities=21%  Similarity=0.452  Sum_probs=37.9

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      .++.+|||||||+|..|+++|..|++ .|++||+|||.+....
T Consensus         4 ~~~~~~D~~i~GtGl~~~~~a~~~~~-~g~~vl~id~~~~~gg   45 (650)
T 1vg0_A            4 NLPSDFDVIVIGTGLPESIIAAACSR-SGQRVLHVDSRSYYGG   45 (650)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSCG
T ss_pred             cCCCcCCEEEECCcHHHHHHHHHHHh-CCCEEEEEcCCCcccC
Confidence            45568999999999999999999999 8999999999987753

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.21  E-value=0.00018  Score=77.98  Aligned_cols=35  Identities=26%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ...|||||||||+||+++|.+|++ .|++|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~-~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAK-YGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHh-CCCeEEEEecc
Confidence            456999999999999999999999 79999999984

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.20  E-value=0.00098  Score=69.61  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|.+|+-+|..|++ .|.+|+|+|+++
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~-~g~~V~lv~~~~  200 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHR-LGAEVIVLEYMD  200 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCEEEEEecCC
Confidence            469999999999999999999 799999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.20  E-value=0.00038  Score=71.79  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=42.8

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..++.|+++++++.|++|..+   +++.+|++. +|+  ++.++ .||+|+|..-...++..+|+
T Consensus       194 ~l~~~GV~i~~~~~v~~i~~~---~~~~~v~~~-dg~--~i~aD-~Vv~a~G~~p~~~l~~~~gl  251 (410)
T 3ef6_A          194 LLTELGVQVELGTGVVGFSGE---GQLEQVMAS-DGR--SFVAD-SALICVGAEPADQLARQAGL  251 (410)
T ss_dssp             HHHHHTCEEECSCCEEEEECS---SSCCEEEET-TSC--EEECS-EEEECSCEEECCHHHHHTTC
T ss_pred             HHHHCCCEEEeCCEEEEEecc---CcEEEEEEC-CCC--EEEcC-EEEEeeCCeecHHHHHhCCC
Confidence            345679999999999999754   345566654 344  68898 69999998655568887776

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.20  E-value=0.00015  Score=76.95  Aligned_cols=37  Identities=16%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      .|..+||+||||||++|+++|.+|++..|++|+|+|+
T Consensus         3 ~M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~   39 (495)
T 2wpf_A            3 HMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV   39 (495)
T ss_dssp             CCCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CcccccCEEEECCChhHHHHHHHHHHhcCCeEEEEec
Confidence            3555799999999999999999998713899999994

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.17  E-value=0.0034  Score=65.49  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -+++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  203 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYAN-FGTKVTILEGAG  203 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCC
Confidence            479999999999999999999 899999999875

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.17  E-value=0.0039  Score=61.50  Aligned_cols=53  Identities=13%  Similarity=0.112  Sum_probs=39.9

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      +.|+++++++.|++|..+   +++.+|++..  +|+..++.++ .||+|+|.--+..+|
T Consensus       200 ~~gv~i~~~~~v~~i~~~---~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l  254 (325)
T 2q7v_A          200 NPKMKFIWDTAVEEIQGA---DSVSGVKLRNLKTGEVSELATD-GVFIFIGHVPNTAFV  254 (325)
T ss_dssp             CTTEEEECSEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             cCCceEecCCceEEEccC---CcEEEEEEEECCCCcEEEEEcC-EEEEccCCCCChHHH
Confidence            469999999999999764   4677888874  5665678998 699999863333344

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.16  E-value=0.0012  Score=68.12  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  178 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATART-AGVHVSLVETQP  178 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEEeCC
Confidence            479999999999999999999 799999999875

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.16  E-value=0.0024  Score=63.24  Aligned_cols=60  Identities=13%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++.|+++++++.|++|.-+   +++.+|++..  +++..++.++ .||+|+|.--...+|..+|+
T Consensus       201 l~~~gv~v~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~l~~~~~  262 (335)
T 2zbw_A          201 HEEGRLEVLTPYELRRVEGD---ERVRWAVVFHNQTQEELALEVD-AVLILAGYITKLGPLANWGL  262 (335)
T ss_dssp             HHTTSSEEETTEEEEEEEES---SSEEEEEEEETTTCCEEEEECS-EEEECCCEEEECGGGGGSCC
T ss_pred             cccCCeEEecCCcceeEccC---CCeeEEEEEECCCCceEEEecC-EEEEeecCCCCchHhhhcce
Confidence            35679999999999999763   4677787763  4554578998 69999997333235544443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.16  E-value=0.0042  Score=61.40  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=41.7

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLL  334 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL  334 (511)
                      ++.|+++++++.|++|..++++.++.+|++..  +++..++.++ .||+|+|.--+..++
T Consensus       206 ~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~p~~~~~  264 (333)
T 1vdc_A          206 SNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFAIGHEPATKFL  264 (333)
T ss_dssp             TCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEECSCEEESCGGG
T ss_pred             hCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEecC-EEEEEeCCccchHHh
Confidence            46799999999999998664212787888875  4555578998 699999974333343

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.16  E-value=0.0019  Score=67.90  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  216 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQP  216 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-cCCEEEEEEeCC
Confidence            469999999999999999999 899999999885

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.15  E-value=0.0016  Score=68.27  Aligned_cols=58  Identities=21%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..++.|++++++++|++|..++  ++++ |.+. +++  ++.++ .||+|+|..-+..++...|+
T Consensus       211 ~l~~~GV~i~~~~~v~~i~~~~--~~v~-v~~~-~g~--~i~aD-~Vv~a~G~~p~~~l~~~~gl  268 (472)
T 3iwa_A          211 DLEKNDVVVHTGEKVVRLEGEN--GKVA-RVIT-DKR--TLDAD-LVILAAGVSPNTQLARDAGL  268 (472)
T ss_dssp             HHHHTTCEEECSCCEEEEEESS--SBEE-EEEE-SSC--EEECS-EEEECSCEEECCHHHHHHTC
T ss_pred             HHHhcCCEEEeCCEEEEEEccC--CeEE-EEEe-CCC--EEEcC-EEEECCCCCcCHHHHHhCCc
Confidence            3456799999999999998754  4554 4443 444  68898 69999998544457766665

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.15  E-value=0.0016  Score=67.72  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=32.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...+++|||+|.+|+-+|..|++ .|.+|+|+|+++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~-~g~~Vtlv~~~~  182 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAK-AGKKVTVIDILD  182 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCc
Confidence            34789999999999999999999 899999999875

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.15  E-value=0.00028  Score=73.34  Aligned_cols=35  Identities=31%  Similarity=0.520  Sum_probs=32.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~~  104 (511)
                      .+||||||||++|+.+|..|++ .|.  +|+|+|+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~-~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRA-SGWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHc-cCcCCCEEEEECCCC
Confidence            5899999999999999999999 677  8999999764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.12  E-value=0.00021  Score=75.61  Aligned_cols=52  Identities=13%  Similarity=0.112  Sum_probs=37.4

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa  327 (511)
                      ..+....++.|++|++++.|++|..+++  ....|++. +|+  ++.++ .||+|+|.
T Consensus       235 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~~v~~~-~G~--~i~~D-~vv~a~G~  286 (490)
T 1fec_A          235 KQLTEQLRANGINVRTHENPAKVTKNAD--GTRHVVFE-SGA--EADYD-VVMLAIGR  286 (490)
T ss_dssp             HHHHHHHHHTTEEEEETCCEEEEEECTT--SCEEEEET-TSC--EEEES-EEEECSCE
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEcCC--CEEEEEEC-CCc--EEEcC-EEEEccCC
Confidence            3455556778999999999999987642  22345443 444  68898 69999997

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.11  E-value=0.00028  Score=77.64  Aligned_cols=36  Identities=39%  Similarity=0.612  Sum_probs=32.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC----CCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI----PHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~----~G~~VLVLEaG~~  104 (511)
                      ++||+|||||++|+++|..|++.    .|.+|+||||.+.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            69999999999999999999982    4999999999754

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.10  E-value=0.0024  Score=66.60  Aligned_cols=33  Identities=21%  Similarity=0.422  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  182 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSN-QNYNVNLIDGHE  182 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSS
T ss_pred             CeEEEECcCHHHHHHHHHHHh-cCCEEEEEEcCC
Confidence            369999999999999999999 799999999875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.07  E-value=0.00047  Score=76.64  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=34.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+||+|||||+||+.+|..|++ .|++|+|+|+.+..
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~-~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLME-SGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence            346899999999999999999999 79999999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.06  E-value=0.0003  Score=74.50  Aligned_cols=63  Identities=14%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..+....++.|+++++++.|++|..++  +++ .|++. +|+  ++.++ .||+|+|..-+..++..+|+
T Consensus       230 ~~~~~~l~~~GV~v~~~~~V~~i~~~~--~~~-~v~l~-dG~--~i~aD-~Vv~a~G~~pn~~l~~~~gl  292 (493)
T 1m6i_A          230 NWTMEKVRREGVKVMPNAIVQSVGVSS--GKL-LIKLK-DGR--KVETD-HIVAAVGLEPNVELAKTGGL  292 (493)
T ss_dssp             HHHHHHHHTTTCEEECSCCEEEEEEET--TEE-EEEET-TSC--EEEES-EEEECCCEEECCTTHHHHTC
T ss_pred             HHHHHHHHhcCCEEEeCCEEEEEEecC--CeE-EEEEC-CCC--EEECC-EEEECCCCCccHHHHHHcCC
Confidence            345555678899999999999997654  333 44443 444  68898 69999998544457777775

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.06  E-value=0.0022  Score=67.30  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  211 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQR-LGADVTAVEFLG  211 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-cCCEEEEEeccC
Confidence            369999999999999999999 799999999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.04  E-value=0.00042  Score=70.43  Aligned_cols=35  Identities=29%  Similarity=0.540  Sum_probs=31.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      .-|+||||||+||+.+|.+|++ .| +|+|+|+.+..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~-~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhh-cC-CEEEEECCCCC
Confidence            4799999999999999999998 78 99999998753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.04  E-value=0.00045  Score=76.00  Aligned_cols=38  Identities=24%  Similarity=0.409  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+||||||||+||+.+|..|++ .|++|+|+|+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence            346899999999999999999999 89999999998654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.04  E-value=0.00046  Score=75.89  Aligned_cols=39  Identities=28%  Similarity=0.334  Sum_probs=35.2

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+||+|||+|++|+++|..|++ .|++|+|+|+.+...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~g  143 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRVG  143 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSSB
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCCC
Confidence            456899999999999999999999 899999999987653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.01  E-value=0.0044  Score=60.41  Aligned_cols=49  Identities=16%  Similarity=0.167  Sum_probs=39.6

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~  328 (511)
                      ++.|+++++++.|++|..++  +++.+|++.. +|+..++.++ .||+|+|..
T Consensus       194 ~~~gv~~~~~~~v~~i~~~~--~~~~~v~~~~~~g~~~~~~~D-~vv~a~G~~  243 (315)
T 3r9u_A          194 KNEKIELITSASVDEVYGDK--MGVAGVKVKLKDGSIRDLNVP-GIFTFVGLN  243 (315)
T ss_dssp             HCTTEEEECSCEEEEEEEET--TEEEEEEEECTTSCEEEECCS-CEEECSCEE
T ss_pred             hcCCeEEEeCcEEEEEEcCC--CcEEEEEEEcCCCCeEEeecC-eEEEEEcCC
Confidence            46799999999999998765  6788888872 4555678898 699999973

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=96.96  E-value=0.0029  Score=66.18  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=30.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  204 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKN-YGVDVTIVEFLP  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            369999999999999999999 799999999875

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.93  E-value=0.0024  Score=67.15  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .-+++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  219 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVE-LGKKVRMIERND  219 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHH-TTCEEEEECCGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-cCCeEEEEEeCC
Confidence            3579999999999999999999 799999999874

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.88  E-value=0.00078  Score=75.84  Aligned_cols=39  Identities=28%  Similarity=0.334  Sum_probs=35.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ...+||+|||+|++|+++|++|++ .|++|+|+|+.+...
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~-~g~~v~v~E~~~~~G  314 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRVG  314 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSSC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCcCC
Confidence            456899999999999999999999 899999999987653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.84  E-value=0.0043  Score=65.39  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=30.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+.+
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  227 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQR-KGKEVVLIDVVD  227 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCeEEEEEccc
Confidence            469999999999999999999 799999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.0022  Score=67.43  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  218 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHG-LGSETHLVIRGE  218 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCceEEEEeCC
Confidence            369999999999999999999 799999999875

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.83  E-value=0.00056  Score=70.47  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=43.1

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ..+....++.|+++++++.|++|. +   +   +|++. +|+  ++.++ .||+|+|.--+..++..+|+
T Consensus       191 ~~l~~~l~~~GV~i~~~~~v~~i~-~---~---~v~~~-~g~--~i~~D-~vi~a~G~~p~~~l~~~~gl  249 (408)
T 2gqw_A          191 DFVARYHAAQGVDLRFERSVTGSV-D---G---VVLLD-DGT--RIAAD-MVVVGIGVLANDALARAAGL  249 (408)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEE-T---T---EEEET-TSC--EEECS-EEEECSCEEECCHHHHHHTC
T ss_pred             HHHHHHHHHcCcEEEeCCEEEEEE-C---C---EEEEC-CCC--EEEcC-EEEECcCCCccHHHHHhCCC
Confidence            345555677899999999999997 3   3   45543 443  68898 69999997544467877776

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=96.81  E-value=0.0043  Score=64.62  Aligned_cols=33  Identities=24%  Similarity=0.188  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  200 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVING-LGAKTHLFEMFD  200 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCEEEEEEeCC
Confidence            369999999999999999999 799999999874

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=96.80  E-value=0.005  Score=64.42  Aligned_cols=33  Identities=12%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  207 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWAR-LGAEVTVVEFAP  207 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-hCCEEEEEecCC
Confidence            368999999999999999999 899999999875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.80  E-value=0.0071  Score=62.97  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  180 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVK-MKKTVHVFESLE  180 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            359999999999999999999 899999999875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.79  E-value=0.0073  Score=64.23  Aligned_cols=47  Identities=15%  Similarity=0.145  Sum_probs=38.5

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCC
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~  328 (511)
                      .|+++++++.|++|.-++  +++++|++.+  +|+..++.++ .||+|+|..
T Consensus       404 ~gV~v~~~~~v~~i~~~~--~~v~~v~~~~~~~g~~~~i~~D-~vi~a~G~~  452 (521)
T 1hyu_A          404 KNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHSVALA-GIFVQIGLL  452 (521)
T ss_dssp             TTEEEECSEEEEEEEECS--SSEEEEEEEETTTCCEEEEECS-EEEECCCEE
T ss_pred             CCcEEEeCCEEEEEEcCC--CcEEEEEEEeCCCCceEEEEcC-EEEECcCCC
Confidence            699999999999997654  6888998875  4565688998 699999964

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.70  E-value=0.0081  Score=64.32  Aligned_cols=32  Identities=28%  Similarity=0.286  Sum_probs=30.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|+++|+.+
T Consensus       153 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  184 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHH-LGIKTTLLELAD  184 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCcEEEEEcCC
Confidence            79999999999999999999 799999999875

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=96.70  E-value=0.013  Score=61.36  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+++|+++
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  213 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWAR-LGAEVTVLEAMD  213 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Confidence            369999999999999999999 799999999875

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=96.68  E-value=0.0062  Score=64.15  Aligned_cols=32  Identities=22%  Similarity=0.268  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus       200 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  231 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWAR-LGAKVTVVEFLD  231 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeccc
Confidence            58999999999999999999 799999999875

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=96.67  E-value=0.012  Score=61.58  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|+|+.+
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~-~G~~Vtlv~~~~  199 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRS-FGSEVTVVALED  199 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCC
Confidence            69999999999999999999 799999999874

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.67  E-value=0.001  Score=69.75  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~~  105 (511)
                      .+||+|||||++|+.+|..|++ .|  .+|+|+|+.+..
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~-~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLK-HHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-HCSSCEEEEECSSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHh-cCCCCCEEEEeCCCcC
Confidence            5899999999999999999998 56  999999998754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.66  E-value=0.0037  Score=66.08  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  215 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTE-LGVPVTVVASQD  215 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            469999999999999999999 799999999875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.66  E-value=0.0028  Score=66.31  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~  210 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGR-IGSEVTVVEFAS  210 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHH-HTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCC
Confidence            369999999999999999999 799999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.63  E-value=0.0054  Score=66.13  Aligned_cols=55  Identities=18%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++.|++|++++.|++|..++  +   +|.+. +++  ++.++ .||+|+|..-+..+|...|+
T Consensus       238 l~~~GV~i~~~~~v~~i~~~~--~---~v~~~-~g~--~i~~D-~Vi~a~G~~p~~~~l~~~g~  292 (588)
T 3ics_A          238 MKNHDVELVFEDGVDALEENG--A---VVRLK-SGS--VIQTD-MLILAIGVQPESSLAKGAGL  292 (588)
T ss_dssp             HHHTTCEEECSCCEEEEEGGG--T---EEEET-TSC--EEECS-EEEECSCEEECCHHHHHTTC
T ss_pred             HHHcCCEEEECCeEEEEecCC--C---EEEEC-CCC--EEEcC-EEEEccCCCCChHHHHhcCc
Confidence            456799999999999997553  2   45543 343  68898 69999997555567777665

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.63  E-value=0.0069  Score=61.34  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=30.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  176 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE-AGYHVKLIHRGA  176 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence            469999999999999999999 799999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=96.62  E-value=0.007  Score=63.87  Aligned_cols=33  Identities=15%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus       175 k~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  207 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSR-LGVIVKVFGRSG  207 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHH-TTCEEEEECCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEECC
Confidence            369999999999999999999 899999999885

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.61  E-value=0.014  Score=60.99  Aligned_cols=32  Identities=13%  Similarity=0.211  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       178 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  209 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFAR-LGSKVTVLARNT  209 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCEEEEEEECC
Confidence            58999999999999999999 799999999874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.60  E-value=0.0012  Score=76.02  Aligned_cols=37  Identities=24%  Similarity=0.472  Sum_probs=33.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~~  105 (511)
                      ..+||+|||||+||+++|.+|++ .|+ +|+|+|+.+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~-~G~~~Vtv~E~~~~~  223 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR-LGYSDITIFEKQEYV  223 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-cCCCcEEEEeCCCCC
Confidence            46899999999999999999999 798 79999997654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=96.59  E-value=0.0071  Score=59.97  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++++.+
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~-~g~~V~l~~~~~  188 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTR-FARSVTLVHRRD  188 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTT-TCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHH-hCCeEEEEEcCC
Confidence            469999999999999999998 799999999864

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.52  E-value=0.0079  Score=63.55  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus       178 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  209 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKR-LGIDSYIFARGN  209 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSS
T ss_pred             eEEEECChHHHHHHHHHHHH-cCCeEEEEecCC
Confidence            69999999999999999999 799999999875

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.52  E-value=0.0085  Score=63.28  Aligned_cols=32  Identities=19%  Similarity=0.125  Sum_probs=29.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCC---CCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIP---HWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~---G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .   |.+|+|+|+++
T Consensus       193 ~vvViGgG~ig~E~A~~l~~-~~~~g~~Vtlv~~~~  227 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNA-YKPPGGKVTLCYRNN  227 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-HCCTTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-hCCCCCeEEEEEcCC
Confidence            69999999999999999998 6   99999999875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.52  E-value=0.0045  Score=64.69  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  204 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRK-LGAQVSVVEARE  204 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHH-CCCeEEEEEcCC
Confidence            369999999999999999999 799999999885

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=96.51  E-value=0.0083  Score=63.25  Aligned_cols=34  Identities=18%  Similarity=0.076  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCC---CCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIP---HWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~---G~~VLVLEaG~~  104 (511)
                      -.++|||+|..|+-+|..|++ .   |.+|+|+|+++.
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~-~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNA-YKARGGQVDLAYRGDM  224 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH-HSCTTCEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-hccCcCeEEEEEcCCC
Confidence            369999999999999999998 6   999999998853

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=96.50  E-value=0.02  Score=59.46  Aligned_cols=36  Identities=14%  Similarity=0.226  Sum_probs=31.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .-.|+|||||..|+-+|..|++. ++.+|.++++.+.
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            45799999999999999999983 3899999999864

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=96.47  E-value=0.0072  Score=63.49  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+.+
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~-~G~~Vtlv~~~~  218 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYST-LGSRLDVVEMMD  218 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHH-HTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEECC
Confidence            369999999999999999999 799999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.44  E-value=0.0019  Score=66.45  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCe--EEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWK--ILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~--VLVLEaG~~~  105 (511)
                      .||||||||++|+.+|.+|++ .|.+  |+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~-~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRA-EGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHc-cCcCCeEEEEECCCCC
Confidence            489999999999999999999 6776  9999998754

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.44  E-value=0.0077  Score=63.56  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-+|..|++.   .|.+|+++|+.+
T Consensus       182 ~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~  217 (493)
T 1m6i_A          182 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEK  217 (493)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc
Confidence            699999999999999999762   368899999764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.42  E-value=0.0014  Score=68.76  Aligned_cols=37  Identities=27%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhc-C-C----CCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSE-I-P----HWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe-~-~----G~~VLVLEaG~~~  105 (511)
                      .+||+|||||++|+.+|..|++ . +    |.+|+|+|+.+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            4899999999999999999987 4 2    8999999998654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=96.39  E-value=0.026  Score=59.35  Aligned_cols=31  Identities=16%  Similarity=0.111  Sum_probs=28.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|.++|+.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~  217 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTG-IGLDTTVMMRS  217 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCceEEEEcC
Confidence            59999999999999999999 79999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.38  E-value=0.0085  Score=62.97  Aligned_cols=33  Identities=33%  Similarity=0.377  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vtli~~~~  224 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHG-LGVKTTLLHRGD  224 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence            479999999999999999999 799999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.36  E-value=0.01  Score=62.01  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vt~v~~~~  203 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHG-LGVKTTLIYRGK  203 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence            469999999999999999999 799999999875

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.35  E-value=0.0015  Score=71.90  Aligned_cols=36  Identities=31%  Similarity=0.514  Sum_probs=32.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCC--------CeEEEEcCCC-CC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPH--------WKILLLEAGH-YF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G--------~~VLVLEaG~-~~  105 (511)
                      ..+|+|||||++|+++|++|++ .|        .+|+|+|+.+ ..
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~-~g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGR-LAATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-HHTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-cCcccccCCCceEEEEeccCccc
Confidence            5799999999999999999998 67        9999999987 54

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.34  E-value=0.0022  Score=65.51  Aligned_cols=56  Identities=11%  Similarity=0.006  Sum_probs=39.9

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .++.|+++++++.|+.+..+.+..   .|+. .+|+  ++.++ .||+++|- ..+.++..||+
T Consensus       212 l~~~gi~v~~~~~v~~v~~~~~~~---~v~~-~~g~--~i~~D-~vi~~~g~-~~~~~~~~~gl  267 (401)
T 3vrd_B          212 TENALIEWHPGPDAAVVKTDTEAM---TVET-SFGE--TFKAA-VINLIPPQ-RAGKIAQSASL  267 (401)
T ss_dssp             STTCSEEEECTTTTCEEEEETTTT---EEEE-TTSC--EEECS-EEEECCCE-EECHHHHHTTC
T ss_pred             HHhcCcEEEeCceEEEEEecccce---EEEc-CCCc--EEEee-EEEEecCc-CCchhHhhccc
Confidence            457899999999999998775311   2333 3344  68898 68888885 34468888887

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.33  E-value=0.016  Score=60.81  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|.++|+.
T Consensus       189 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~  219 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKG-LGYEPTVMVRS  219 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCEEEEEeCC
Confidence            58999999999999999999 79999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.28  E-value=0.015  Score=57.03  Aligned_cols=59  Identities=10%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ++.|+++++++.|++|..++  + +.+|.+.+  +++..++.++ .||+|+|.--++.++..+|+
T Consensus       200 ~~~gv~~~~~~~v~~i~~~~--~-~~~v~~~~~~~g~~~~~~~D-~vv~a~G~~p~~~~~~~~~~  260 (332)
T 3lzw_A          200 HASKVNVLTPFVPAELIGED--K-IEQLVLEEVKGDRKEILEID-DLIVNYGFVSSLGPIKNWGL  260 (332)
T ss_dssp             HHSSCEEETTEEEEEEECSS--S-CCEEEEEETTSCCEEEEECS-EEEECCCEECCCGGGGGSSC
T ss_pred             hcCCeEEEeCceeeEEecCC--c-eEEEEEEecCCCceEEEECC-EEEEeeccCCCchHHhhcCc
Confidence            35689999999999997654  2 55677765  3445578898 69999997554455555554

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.24  E-value=0.022  Score=59.59  Aligned_cols=33  Identities=30%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  220 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSA-LGSKTSLMIRHD  220 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHH-cCCeEEEEEeCC
Confidence            369999999999999999999 799999999875

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.17  E-value=0.021  Score=59.19  Aligned_cols=32  Identities=19%  Similarity=0.407  Sum_probs=30.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus       150 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~  181 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAA-QGKNVTMIVRGE  181 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCeEEEEEcCC
Confidence            79999999999999999999 799999999875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.07  E-value=0.035  Score=63.95  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      .|+|||||..|+-+|..|++ .|. +|+|+++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~-~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALR-CGARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHH-cCCCEEEEEEecC
Confidence            79999999999999999998 686 899999874

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.03  E-value=0.0089  Score=62.04  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|||||..|+-+|..+++ .|.+|+|+|+++
T Consensus       149 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~  180 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYE-RGLHPTLIHRSD  180 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEEESSS
T ss_pred             EEEEECCccchhhhHHHHHh-cCCcceeeeeec
Confidence            69999999999999999999 899999999875

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.88  E-value=0.054  Score=52.67  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=30.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~-~G~~Vt~v~~~~  185 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTK-YGSKVIILHRRD  185 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHH-hCCeeeeecccc
Confidence            469999999999999999999 899999999763

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.84  E-value=0.068  Score=55.76  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=38.2

Q ss_pred             CCcEEEeCceEEEEEEcCCCC-cEEEEEEEE--------------CCeEEEEEeCcEEEEccCCCCcH
Q psy760          279 CNLTVKDSSFVKKILIDPVTK-KACGVLATI--------------KGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~-ra~GV~~~~--------------~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      .|++|++++.+++|.-+++ + ++.+|++..              +|+..++.++ .||+|+|--.++
T Consensus       270 ~gv~~~~~~~~~~i~~~~~-~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d-~Vi~a~G~~p~~  335 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPD-GRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG-LVLSSIGYKSRP  335 (460)
T ss_dssp             EEEEEECSEEEEEEEECTT-SSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS-EEEECCCEECCC
T ss_pred             ceEEEECCCChheEEcCCC-CceEEEEEEEEEEEccccCCCcccCCCceEEEEcC-EEEECCCCCCCC
Confidence            7899999999999976532 4 788887753              2444578998 699999974444

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.81  E-value=0.0061  Score=64.55  Aligned_cols=35  Identities=14%  Similarity=0.457  Sum_probs=31.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...|||||||.||+.+|.+|++ .+++|+|||+.+.
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~-~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDT-KKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCT-TTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhh-CCCcEEEECCCCC
Confidence            3579999999999999999998 7999999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=95.75  E-value=0.027  Score=64.50  Aligned_cols=60  Identities=13%  Similarity=0.037  Sum_probs=44.0

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE------CCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI------KGIDHKILARKEVILSAGAFNSPKLLMLSG  338 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~------~g~~~~v~A~k~VILAAGa~~SP~LL~~SG  338 (511)
                      ++.|++|++++.|++|.-+++ +++.+|++..      +|+..++.++ .||+|+|-.-+..++...|
T Consensus       327 ~~~GV~v~~~~~v~~i~~~~~-~~v~~v~~~~~~~~~~~G~~~~i~~D-~Vv~a~G~~P~~~l~~~~~  392 (965)
T 2gag_A          327 VADGVQVISGSVVVDTEADEN-GELSAIVVAELDEARELGGTQRFEAD-VLAVAGGFNPVVHLHSQRQ  392 (965)
T ss_dssp             HHTTCCEEETEEEEEEEECTT-SCEEEEEEEEECTTCCEEEEEEEECS-EEEEECCEEECCHHHHHTT
T ss_pred             HhCCeEEEeCCEeEEEeccCC-CCEEEEEEEeccccCCCCceEEEEcC-EEEECCCcCcChHHHHhCC
Confidence            356899999999999976411 5788888875      3444589998 6999999744445766654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=95.74  E-value=0.043  Score=58.56  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=28.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||||..|+=.|..+++ -|.+|+|+++.
T Consensus       225 ~lvIIGgG~IGlE~A~~~~~-lG~~VTii~~~  255 (542)
T 4b1b_A          225 KTLVVGASYVALECSGFLNS-LGYDVTVAVRS  255 (542)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-HTCCEEEEESS
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEeccc
Confidence            59999999999999999999 89999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=95.60  E-value=0.057  Score=57.22  Aligned_cols=31  Identities=16%  Similarity=0.147  Sum_probs=28.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||+|..|+-+|..|++ .|.+|+|+|+.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEecc
Confidence            49999999999999999999 79999999874

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=95.33  E-value=0.051  Score=56.66  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~  205 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRL-MGVQTHIIEMLD  205 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCEEEEEEeCC
Confidence            359999999999999999999 899999999875

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=95.26  E-value=0.12  Score=55.54  Aligned_cols=31  Identities=13%  Similarity=0.122  Sum_probs=28.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||||..|+-+|..|++ .|.+|+|+|+.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLAS-LGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCEEEEEECC
Confidence            59999999999999999999 79999999976

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=95.20  E-value=0.034  Score=57.99  Aligned_cols=33  Identities=9%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      -.|+|||||..|+-+|..+.+ .|. +|.++++.+
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIR-QGATSVKCLYRRD  298 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHH-cCCCEEEEEEeCC
Confidence            469999999999999999988 676 699999874

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=94.85  E-value=0.12  Score=54.64  Aligned_cols=53  Identities=15%  Similarity=0.113  Sum_probs=33.4

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCe--EEEEEeCcEEEEccCCCCcHH
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGI--DHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~--~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ..++.|++|++++.|++|.-+   +....+.. .+++  ..++.++ .||.|+|.--+|.
T Consensus       281 ~L~~~GV~v~~~~~v~~v~~~---~~~~~~~~-~dg~~~~~~i~ad-~viwa~Gv~~~~~  335 (502)
T 4g6h_A          281 HLENTSIKVHLRTAVAKVEEK---QLLAKTKH-EDGKITEETIPYG-TLIWATGNKARPV  335 (502)
T ss_dssp             HHHHTTCEEETTEEEEEECSS---EEEEEEEC-TTSCEEEEEEECS-EEEECCCEECCHH
T ss_pred             HHHhcceeeecCceEEEEeCC---ceEEEEEe-cCcccceeeeccC-EEEEccCCcCCHH
Confidence            345779999999999998422   11111111 2232  2468898 6999999755553

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.32  E-value=0.25  Score=54.01  Aligned_cols=48  Identities=17%  Similarity=0.153  Sum_probs=35.3

Q ss_pred             HhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCC
Q psy760          273 DPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       273 ~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~  328 (511)
                      ....++.|+++++++.|++|.  ++     +|.+..+|+..++.++ .||+|+|.-
T Consensus       580 ~~~l~~~GV~v~~~~~v~~i~--~~-----~v~~~~~G~~~~i~~D-~Vi~a~G~~  627 (671)
T 1ps9_A          580 RTTLLSRGVKMIPGVSYQKID--DD-----GLHVVINGETQVLAVD-NVVICAGQE  627 (671)
T ss_dssp             HHHHHHTTCEEECSCEEEEEE--TT-----EEEEEETTEEEEECCS-EEEECCCEE
T ss_pred             HHHHHhcCCEEEeCcEEEEEe--CC-----eEEEecCCeEEEEeCC-EEEECCCcc
Confidence            334567899999999999985  32     3444356665689998 699999973

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.28  E-value=0.27  Score=51.14  Aligned_cols=49  Identities=16%  Similarity=0.104  Sum_probs=36.1

Q ss_pred             CCcEEEeCceEEEEEEcCCCCcEEEEEEEE---------------CCeEEEEEeCcEEEEccCCCCcH
Q psy760          279 CNLTVKDSSFVKKILIDPVTKKACGVLATI---------------KGIDHKILARKEVILSAGAFNSP  331 (511)
Q Consensus       279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---------------~g~~~~v~A~k~VILAAGa~~SP  331 (511)
                      .|++|++++.+.+|.-+   +++.+|++..               +|+..++.++ .||+|.|--.++
T Consensus       265 ~gv~i~~~~~~~~i~~~---~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d-~vi~a~G~~p~~  328 (456)
T 1lqt_A          265 RRMVFRFLTSPIEIKGK---RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQ-LVVRSVGYRGVP  328 (456)
T ss_dssp             EEEEEECSEEEEEEECS---SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECS-EEEECSCEECCC
T ss_pred             ceEEEEeCCCCeEEecC---CcEeEEEEEEEEecCCCcccccccCCCceEEEEcC-EEEEccccccCC
Confidence            68999999999999743   4566676652               3444578998 699999975444

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=93.04  E-value=0.088  Score=51.28  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=30.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..|++ .|.+|+|+|+++.
T Consensus       147 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTK-FADKVTIVHRRDE  179 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TCSEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEecccc
Confidence            69999999999999999999 8999999999864

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.69  E-value=0.094  Score=45.76  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=31.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .-.++|||+|..|..+|..|.+ .|.+|+++++.+.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~-~g~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS-SGHSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            3569999999999999999998 7999999998653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=92.41  E-value=0.083  Score=53.71  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      -.++|||+|..|+-+|..|++ .|.+|+|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~-~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIID-SGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCeEEEEEcCCcc
Confidence            369999999999999999999 79999999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=92.32  E-value=0.11  Score=43.73  Aligned_cols=33  Identities=36%  Similarity=0.510  Sum_probs=29.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..++|||+|..|..+|..|++ .|.+|+++|+.+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            369999999999999999999 799999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=92.28  E-value=0.1  Score=44.68  Aligned_cols=34  Identities=18%  Similarity=0.360  Sum_probs=30.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.++|||.|..|..+|..|.+ .|++|+++|+.+.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            359999999999999999999 7999999998753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.22  E-value=0.11  Score=44.42  Aligned_cols=32  Identities=19%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|+|+|..|..+|..|++ .|++|+++|+.+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~-~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTA-AGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            59999999999999999999 799999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.32  E-value=0.15  Score=44.28  Aligned_cols=32  Identities=13%  Similarity=0.153  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|+|+|..|..+|..|.+ .|++|+++|+.+
T Consensus         5 ~vlI~G~G~vG~~la~~L~~-~g~~V~vid~~~   36 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQ-RGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Confidence            58999999999999999999 799999999863

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=90.73  E-value=0.48  Score=45.88  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=33.4

Q ss_pred             CCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          278 RCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      +.|+.+++++ |+.+.-++  +++++|++. +++  ++.++ .||+++|+.....+|...|+
T Consensus       192 ~~g~~~~~~~-v~~~~~~~--~~~~~v~~~-~g~--~i~~~-~~vi~~g~~~~~~~~~~~g~  246 (304)
T 4fk1_A          192 NKNIPVITES-IRTLQGEG--GYLKKVEFH-SGL--RIERA-GGFIVPTFFRPNQFIEQLGC  246 (304)
T ss_dssp             TTTCCEECSC-EEEEESGG--GCCCEEEET-TSC--EECCC-EEEECCEEECSSCHHHHTTC
T ss_pred             ccceeEeeee-EEEeecCC--Ceeeeeecc-ccc--eeeec-ceeeeeccccCChhhhhcCe
Confidence            3456666554 55565443  566667654 333  56676 58888887654456666665

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=90.32  E-value=0.38  Score=49.79  Aligned_cols=57  Identities=19%  Similarity=0.023  Sum_probs=41.9

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCC
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~  328 (511)
                      .....|...+++.|++|+++++|++|..+.+++++++|+.  +++  +++|+ .||+|+|.+
T Consensus       243 ~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~--~g~--~~~ad-~VV~a~~~~  299 (453)
T 2bcg_G          243 ELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT--KLG--TFKAP-LVIADPTYF  299 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE--TTE--EEECS-CEEECGGGC
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE--CCe--EEECC-EEEECCCcc
Confidence            3333454556678999999999999998721168888865  454  58897 599999975

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.30  E-value=0.23  Score=40.37  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=29.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~  103 (511)
                      -.++|+|+|..|..+|..|.+ .| .+|.++++.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~-~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKT-SSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-CSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCceEEEEeCCH
Confidence            359999999999999999999 68 8999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=89.53  E-value=0.22  Score=42.03  Aligned_cols=32  Identities=19%  Similarity=0.427  Sum_probs=29.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .++|+|+|..|..+|..|.+ .|.+|.++++.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~-~g~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHR-MGHEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            49999999999999999999 799999999864

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=89.39  E-value=0.27  Score=48.79  Aligned_cols=33  Identities=18%  Similarity=0.352  Sum_probs=28.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|+|||+|..|+-+|..|++ .|.+|.++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~-~g~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAK-NGSDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHh-cCCeEEEEecCCC
Confidence            69999999999999999999 7999999999854

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.09  E-value=0.23  Score=44.38  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG~  103 (511)
                      -.++|||.|..|..+|..|.+ . |++|+++|+.+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~-~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRA-RYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH-HHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHh-ccCCeEEEEECCH
Confidence            469999999999999999998 8 99999999865

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=88.73  E-value=0.34  Score=47.67  Aligned_cols=32  Identities=13%  Similarity=0.310  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|.+|.++.|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAK-TGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHH-TTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCh
Confidence            58999999999999999999 799999999975

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=88.63  E-value=0.4  Score=46.69  Aligned_cols=32  Identities=16%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|++|+++++.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            49999999999999999999 799999999874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.50  E-value=0.32  Score=48.02  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.|.|||+|..|...|..+|. .|++|+|+|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~-~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFAS-GGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            359999999999999999999 899999999764

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=88.29  E-value=0.76  Score=49.81  Aligned_cols=58  Identities=12%  Similarity=0.132  Sum_probs=43.2

Q ss_pred             cchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccC
Q psy760          265 RSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAG  326 (511)
Q Consensus       265 ~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAG  326 (511)
                      .......|.+.+++.|.+|+++++|++|++++++++++||. ..+|+  +++|+ .||.++.
T Consensus       377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~-~~~Ge--~i~A~-~VVs~~~  434 (650)
T 1vg0_A          377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVI-DQFGQ--RIISK-HFIIEDS  434 (650)
T ss_dssp             TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEE-ETTSC--EEECS-EEEEEGG
T ss_pred             hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEE-eCCCC--EEEcC-EEEEChh
Confidence            44555566667788999999999999999986447899987 33454  57896 5776554

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=88.26  E-value=0.35  Score=47.45  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||+|..|...|..|++ .|.+|.++.|..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQR-SGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHH-TSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCeEEEEEcCc
Confidence            58999999999999999999 799999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=88.13  E-value=0.39  Score=49.51  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=30.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~  104 (511)
                      -.|+|||+|..|+=+|..|++ .+.+ |+|+++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~-~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTP-VAKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTT-TSCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHH-HhCCcEEEEeCCCC
Confidence            469999999999999999999 7888 999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=87.83  E-value=0.42  Score=50.79  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=31.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|+|||+|..|+-+|..|++ .+.+|.|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAP-EVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            469999999999999999999 7999999999975

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=87.70  E-value=0.43  Score=49.09  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=41.7

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCC
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~  328 (511)
                      .....|...+++.|++|+++++|++|..++  +++++|.  .+++  +++|+ .||+|+|..
T Consensus       235 ~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~--~~v~~v~--~~g~--~~~ad-~VV~a~~~~  289 (433)
T 1d5t_A          235 ELPQGFARLSAIYGGTYMLNKPVDDIIMEN--GKVVGVK--SEGE--VARCK-QLICDPSYV  289 (433)
T ss_dssp             HHHHHHHHHHHHHTCCCBCSCCCCEEEEET--TEEEEEE--ETTE--EEECS-EEEECGGGC
T ss_pred             HHHHHHHHHHHHcCCEEECCCEEEEEEEeC--CEEEEEE--ECCe--EEECC-EEEECCCCC
Confidence            344445555666799999999999999876  6788776  3554  68897 699999974

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=87.62  E-value=0.32  Score=44.83  Aligned_cols=33  Identities=12%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|+|||+|..|..+|..|.+ .|++|+++|+.+.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~-~g~~v~vid~~~~   34 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS-RKYGVVIINKDRE   34 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            38999999999999999999 7999999998653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=87.54  E-value=0.42  Score=50.89  Aligned_cols=34  Identities=12%  Similarity=0.223  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|+|||+|..|+-+|..|++ .+.+|+|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~-~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAE-TAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHh-hCCEEEEEEcCCC
Confidence            469999999999999999999 7999999999975

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=87.33  E-value=0.52  Score=45.14  Aligned_cols=33  Identities=12%  Similarity=0.057  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+.|||+|..|...|..|++ .|++|.++++.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCcc
Confidence            37899999999999999999 7999999998753

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=86.65  E-value=0.43  Score=49.56  Aligned_cols=34  Identities=12%  Similarity=0.029  Sum_probs=30.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|+|||+|..|+=+|..|++ .|.+|+|+++.+.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~-~g~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYK-YGAKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHH-TTCSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHH-hCCeEEEEEECCC
Confidence            369999999999999999999 7999999998753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.57  E-value=0.57  Score=45.23  Aligned_cols=33  Identities=12%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.|||+|..|...|..|++ .|++|++.++.+.
T Consensus         6 kV~VIGaG~mG~~iA~~la~-~G~~V~l~d~~~~   38 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAF-HGFAVTAYDINTD   38 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSHH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence            48999999999999999999 8999999998753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=86.42  E-value=0.66  Score=42.61  Aligned_cols=34  Identities=12%  Similarity=0.235  Sum_probs=30.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+.|||+|..|...|..|++ .|.+|.++++.+.
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~-~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEI-AGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence            469999999999999999999 7999999998753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=86.13  E-value=0.51  Score=46.76  Aligned_cols=31  Identities=35%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .|.|||+|..|...|..|++ .|.+|.++++.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~-~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLAL-AGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHH-TTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCEEEEEECh
Confidence            58999999999999999999 79999999985

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=86.11  E-value=0.64  Score=47.16  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARA-KGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCCcc
Confidence            469999999999999999999 79999999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=85.86  E-value=0.63  Score=47.35  Aligned_cols=35  Identities=26%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.++|+.+..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTK-FGVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCch
Confidence            469999999999999999999 89999999998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=85.86  E-value=0.62  Score=43.51  Aligned_cols=33  Identities=12%  Similarity=0.150  Sum_probs=29.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .--|+|||||-.|...|..|.+ .|.+|+|++..
T Consensus        31 gk~VLVVGgG~va~~ka~~Ll~-~GA~VtVvap~   63 (223)
T 3dfz_A           31 GRSVLVVGGGTIATRRIKGFLQ-EGAAITVVAPT   63 (223)
T ss_dssp             TCCEEEECCSHHHHHHHHHHGG-GCCCEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCEEEEECCC
Confidence            4569999999999999999999 89999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=85.23  E-value=0.71  Score=45.19  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=30.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~  103 (511)
                      ..|.|||+|..|...|..|++ .|.  +|.++++..
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~-~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQ-RGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCCh
Confidence            469999999999999999999 788  999999874

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=85.22  E-value=0.48  Score=50.44  Aligned_cols=34  Identities=12%  Similarity=0.257  Sum_probs=31.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|+|||+|..|+-+|..|++ .+.+|+|++|.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAE-QAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            469999999999999999999 7899999999975

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=85.13  E-value=0.69  Score=44.79  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=29.5

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|++|.++++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~   36 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQ-GGNDVTLIDQWP   36 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             eEEEECcCHHHHHHHHHHHh-CCCcEEEEECCH
Confidence            48999999999999999999 799999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=84.93  E-value=0.49  Score=45.64  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .--|+|||||-.|...|..|.+ .|.+|+|++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~-~Ga~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMP-TGCKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGG-GTCEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHh-CCCEEEEEcCC
Confidence            3559999999999999999999 89999999864

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=84.83  E-value=0.43  Score=46.35  Aligned_cols=32  Identities=25%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||+|..|...|..|++ .|.+|.++.|..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~-~g~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQ-SLPHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HCTTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEEecc
Confidence            58999999999999999999 789999999874

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=84.58  E-value=0.65  Score=44.02  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=31.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      ...|+|||+|..|+.+|..|++ .|. +|+|+|+...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~-~Gv~~i~lvD~d~v   66 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS-AGVGNLTLLDFDTV   66 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH-HTCSEEEEECCCBC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH-cCCCeEEEEcCCCc
Confidence            4679999999999999999999 787 8999998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.51  E-value=0.57  Score=48.73  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=30.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.+||+|+|-.|..+|..|++ .|++|+|+|+.+.
T Consensus         4 M~iiI~G~G~vG~~la~~L~~-~~~~v~vId~d~~   37 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVG-ENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCS-TTEEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            359999999999999999998 7999999998754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=84.41  E-value=0.73  Score=48.18  Aligned_cols=34  Identities=18%  Similarity=0.397  Sum_probs=31.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ...|.|||.|..|+..|..|++ .|++|+++++.+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~-~G~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLAD-IGHDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            4679999999999999999999 899999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=83.99  E-value=0.85  Score=44.79  Aligned_cols=34  Identities=15%  Similarity=0.344  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      ..|.|||+|..|..+|..|++ .|+ +|.++|+...
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~-~g~~~V~l~D~~~~   39 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGK-DNLADVVLFDIAEG   39 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCceEEEEeCCch
Confidence            469999999999999999998 788 9999998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=83.40  E-value=0.86  Score=44.74  Aligned_cols=31  Identities=29%  Similarity=0.549  Sum_probs=28.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..|.|||+|..|...|..|++ .|.+|.++ +.
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~-~G~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLAR-AGHEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH-TTCEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHH-CCCeEEEE-Ec
Confidence            458999999999999999999 79999999 64

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=83.35  E-value=0.92  Score=47.83  Aligned_cols=35  Identities=9%  Similarity=0.143  Sum_probs=32.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      -.++|||+|..|+-+|..|++ .|.+|.|+|+.+..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~-~G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNA-TGRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence            569999999999999999999 89999999998754

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=83.00  E-value=0.63  Score=48.03  Aligned_cols=55  Identities=13%  Similarity=0.078  Sum_probs=37.9

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCC
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF  328 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~  328 (511)
                      .....|...+++.|++|+++++|++|..++  +++..|  ..+++  ++.|+ .||+|+++.
T Consensus       235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~v--~~~~~--~~~ad-~vv~a~p~~  289 (477)
T 3nks_A          235 MLPQALETHLTSRGVSVLRGQPVCGLSLQA--EGRWKV--SLRDS--SLEAD-HVISAIPAS  289 (477)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCCCEEEECG--GGCEEE--ECSSC--EEEES-EEEECSCHH
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEcC--CceEEE--EECCe--EEEcC-EEEECCCHH
Confidence            333445455566799999999999998875  332334  33444  58897 699999863

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=82.83  E-value=1.1  Score=42.62  Aligned_cols=32  Identities=16%  Similarity=0.100  Sum_probs=29.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .| +|.++++++
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~-~g-~v~~v~~~~  173 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPD-WG-ETTFFTNGI  173 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGG-TS-EEEEECTTT
T ss_pred             CEEEEEecCccHHHHHHHhhh-cC-cEEEEECCC
Confidence            469999999999999999999 68 999999875

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=82.71  E-value=1  Score=46.82  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=29.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|..+|..|++ .|++|+++|+.+
T Consensus        39 kV~VIGaG~MG~~iA~~la~-~G~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFAR-VGISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            59999999999999999999 899999999865

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=82.49  E-value=1  Score=44.41  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +..+.|||+|..|...|.+|++ .|++|.+++|.+
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~-~G~~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHE-NGEEVILWARRK   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             CCcEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence            4569999999999999999999 799999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=82.38  E-value=1  Score=44.53  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=29.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..|.|||+|..|...|..|++ .|++|.++++.+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~-~g~~V~~~~r~~   37 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDA   37 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCH
Confidence            369999999999999999999 799999999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=82.13  E-value=0.68  Score=39.55  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=29.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.+.|||+|..|..+|..|++ .|.+|.+.++..
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~-~g~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSY-PQYKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCT-TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCH
Confidence            459999999999999999998 789999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=81.94  E-value=1  Score=46.37  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||.|..|+..|..|++ .|++|+++++.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~-~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSA-RGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            37899999999999999999 799999999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=81.88  E-value=1.1  Score=46.52  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|.|||.|..|+..|..|++ .|++|+++++.+.
T Consensus         4 kI~VIG~G~vG~~lA~~La~-~G~~V~~~D~~~~   36 (450)
T 3gg2_A            4 DIAVVGIGYVGLVSATCFAE-LGANVRCIDTDRN   36 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHh-cCCEEEEEECCHH
Confidence            58999999999999999999 7999999998753

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=81.85  E-value=1.3  Score=43.23  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|.|||.|..|...|..|++ .|++|.+.++.+.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~-~G~~V~~~dr~~~   55 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLK-NGFKVTVWNRTLS   55 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSGG
T ss_pred             CEEEEECccHHHHHHHHHHHH-CCCeEEEEeCCHH
Confidence            469999999999999999999 8999999998753

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=81.80  E-value=1.1  Score=46.67  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=31.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCC-CC-eEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIP-HW-KILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~-G~-~VLVLEaG~~  104 (511)
                      -.|.|||.|..|+.+|..|++ . |+ +|+++++.+.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~-~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFAD-APCFEKVLGFQRNSK   54 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-STTCCEEEEECCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHH-hCCCCeEEEEECChh
Confidence            469999999999999999999 7 99 9999998865

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=81.71  E-value=0.9  Score=44.57  Aligned_cols=29  Identities=21%  Similarity=0.316  Sum_probs=27.7

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEA  101 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEa  101 (511)
                      +.|||+|..|...|..|++ .|++|.++++
T Consensus         3 I~iiG~G~mG~~~a~~L~~-~g~~V~~~~r   31 (335)
T 1txg_A            3 VSILGAGAMGSALSVPLVD-NGNEVRIWGT   31 (335)
T ss_dssp             EEEESCCHHHHHHHHHHHH-HCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHh-CCCeEEEEEc
Confidence            7899999999999999999 7999999998

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=81.58  E-value=1.1  Score=46.43  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=30.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      --|.|||+|..|...|..|++ .|++|+++|+.+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~-aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGL-AGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEECcHH
Confidence            359999999999999999999 8999999998754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=81.23  E-value=1.4  Score=43.05  Aligned_cols=31  Identities=23%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+.|||+|..|+..|..|+  .|.+|.++.|.+
T Consensus         4 kI~IiGaGa~G~~~a~~L~--~g~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS--LYHDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH--TTSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh--cCCceEEEECCH
Confidence            5899999999999999999  489999999875

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=81.10  E-value=1.3  Score=45.71  Aligned_cols=36  Identities=11%  Similarity=0.168  Sum_probs=32.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      ...+.|||.|..|+..|..|++ .|++|+++++.+..
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~-~G~~V~~~D~~~~k   43 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSD-FGHEVVCVDKDARK   43 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCSTT
T ss_pred             ceEEEEEcCCHHHHHHHHHHHH-CCCEEEEEeCCHHH
Confidence            4678999999999999999999 89999999997653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=80.81  E-value=1.3  Score=44.42  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ..|.|||+|.-|...|..|++ .|++|.+.++.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~-~G~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLAR-KGQKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHT-TTCCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence            469999999999999999999 799999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=80.58  E-value=1.1  Score=45.86  Aligned_cols=34  Identities=24%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.|||||.|-.|..+|..|.+ .|.+|+|||+.+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            359999999999999999999 7999999998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=80.54  E-value=1.4  Score=42.82  Aligned_cols=32  Identities=16%  Similarity=0.310  Sum_probs=28.6

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||+|..|+-+|..|++ .+ +|+++++..
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~-~~-~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVST-VA-ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHh-hC-CEEEEECCC
Confidence            479999999999999999999 66 699999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=80.47  E-value=1.5  Score=44.67  Aligned_cols=35  Identities=11%  Similarity=0.099  Sum_probs=31.1

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .-.|+|||+|.+|+.+|..|.. .|.+|+++|+.+.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~-lGa~V~v~D~~~~  224 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARR-LGAVVSATDVRPA  224 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSTT
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEcCCHH
Confidence            3579999999999999999888 8999999998764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=80.46  E-value=1.1  Score=44.68  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .|.|||+|..|...|..|++ .|++|.++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~-~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK-KCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence            69999999999999999999 799999999864

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=80.46  E-value=1.5  Score=43.32  Aligned_cols=34  Identities=24%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      ..|.|||+|..|..+|..|+. .|+ +|.++|....
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~-~g~~~V~L~Di~~~   49 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQ-KDLGDVYMFDIIEG   49 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEECCHH
Confidence            369999999999999999999 788 9999998753

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=80.43  E-value=1.5  Score=39.84  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=28.4

Q ss_pred             EEEEC-CCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVG-AGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVG-gG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +.||| +|..|...|..|++ .|++|.++++.+
T Consensus         3 i~iiGa~G~~G~~ia~~l~~-~g~~V~~~~r~~   34 (212)
T 1jay_A            3 VALLGGTGNLGKGLALRLAT-LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHT-TTCEEEEEESSH
T ss_pred             EEEEcCCCHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence            78999 99999999999999 799999998863

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=80.32  E-value=1.2  Score=43.98  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=30.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      ..|.|||+|..|..+|..|++ .|+ +|.++|....
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~-~g~~~V~L~D~~~~   44 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCAL-RELADVVLYDVVKG   44 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCeEEEEECChh
Confidence            469999999999999999998 687 9999998753

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=80.29  E-value=1.4  Score=43.67  Aligned_cols=36  Identities=28%  Similarity=0.437  Sum_probs=31.4

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      ...-|+|||+|..|+.+|..|+. .|. ++.|+|....
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~-aGVg~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIA-WGVRKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCEe
Confidence            45779999999999999999999 786 7899998753

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=80.23  E-value=1.6  Score=42.34  Aligned_cols=35  Identities=17%  Similarity=0.215  Sum_probs=31.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...|.|||.|..|...|.+|++ .|++|.+.++.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~-~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE-WPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT-STTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCHH
Confidence            3579999999999999999999 7999999998764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=80.19  E-value=1.4  Score=42.98  Aligned_cols=32  Identities=25%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~  103 (511)
                      .|.|||+|..|..+|..|+. .|+  .|.++|...
T Consensus         2 kI~VIGaG~vG~~la~~la~-~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVL-RGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCCCEEEEEeCCH
Confidence            37899999999999999999 788  999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=80.02  E-value=1.5  Score=42.01  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=29.7

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      --++|+|+|.+|..+|..|++ .|.+|.|+.|..
T Consensus       120 k~vlViGaGg~g~a~a~~L~~-~G~~V~v~~R~~  152 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLS-LDCAVTITNRTV  152 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             CEEEEECCcHHHHHHHHHHHH-cCCEEEEEECCH
Confidence            359999999999999999999 789999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	511
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	1e-67
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	4e-64
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	2e-50
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	6e-47
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	2e-45
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	5e-44
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	9e-39
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	2e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	4e-06
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	5e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	7e-05
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	8e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	8e-05
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	2e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	3e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	3e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	3e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	4e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	5e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	6e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	6e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.001
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.001
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.001
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.001
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.001
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.002
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.002
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.002
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	0.002
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.002
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.002
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.002
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.002
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	0.002
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.003
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	0.004
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	0.004
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.004

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  220 bits (561), Expect = 1e-67
 Identities = 95/383 (24%), Positives = 164/383 (42%), Gaps = 46/383 (12%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF---NYLVDIPVLNTNLILSPLNW 125
            YD+II G G  G TVA +L+E P  K+L++E G Y      +++ P     +  + ++ 
Sbjct: 24  TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWS 184
            Y T          +  +     +GKG+GG++LIN   +TR +K   D W K  G  GW+
Sbjct: 84  NYLTVPL-------INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136

Query: 185 YNEVLPYFKKAERIQISELQ--------NSSYHGTQGFIGV---DYTEYNTPMLDAFLQA 233
           ++ +  Y KKAE  +             N++ HGT G +     D  +  +P++ A +  
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196

Query: 234 GMEAGYPLVDYN--GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKK 291
               G P+      G  +            + R  +A+ ++ P  +R NL +     V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256

Query: 292 ILID--PVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
           +L        +A GV   T K ++  + A+ EV+L+AG+  SP +L  SGIG +  L+  
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQA 316

Query: 349 NIPVIKNLR--VGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPIT 406
           N+  + +L   +   +   L             G + D   K         +  S+ P  
Sbjct: 317 NVTQLLDLPVGICSMMSREL-------------GGVVDATAKVYGTQGLRVIDGSIPPT- 362

Query: 407 NSETLSTNIKTIFAAHHDKINKS 429
               +S+++ TIF     K+  +
Sbjct: 363 ---QVSSHVMTIFYGMALKVADA 382

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  211 bits (537), Expect = 4e-64
 Identities = 92/321 (28%), Positives = 151/321 (47%), Gaps = 28/321 (8%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF---NYLVDIPVLNTNLILSPLNW 125
             D+II G G  G T A RL+E P+  +L++E+G Y      +++      ++  S ++ 
Sbjct: 17  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 76

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW-S 184
            Y+T        L    Q     SG G+GG++L+N   +TR +K   D W  +      +
Sbjct: 77  AYETV------ELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 130

Query: 185 YNEVLPYFKKAER--------IQISELQNSSYHGTQGFIGVDYTEYN---TPMLDAFLQA 233
           ++ V  Y  +AER        I      N+S HG  G +     +     +P++ A + A
Sbjct: 131 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 190

Query: 234 GMEAGYPLV-DYNGKTQTGFARAQATLHKRSRRS-SAKDYIDPIKKRCNLTVKDSSFVKK 291
             + G P   D+      G +    TLH+   RS +A++++ P  +R NL V    +V K
Sbjct: 191 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGK 250

Query: 292 ILID--PVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
           +L+     T +A GV   T KG  H + A+ EV+L+AG+  SP +L  SGIG +  L  L
Sbjct: 251 VLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPL 310

Query: 349 NIPVIKNLRVG--ENLQEHLA 367
            I  + +L VG    + + + 
Sbjct: 311 GIDTVVDLPVGLCSMMPKEMG 331

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  174 bits (441), Expect = 2e-50
 Identities = 79/334 (23%), Positives = 132/334 (39%), Gaps = 34/334 (10%)

Query: 52  FEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDI 111
           F  L +     D +L   YD++IVG G  GC +A  LSE   +K+L+LE G       ++
Sbjct: 9   FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNV 66

Query: 112 PVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRN 171
              +  +         KT  E       +         G+ +GGTS+IN  +Y R N   
Sbjct: 67  LTADGFVYNLQQEDDGKTPVER-----FVSEDGIDNVRGRVLGGTSIINAGVYARANTSI 121

Query: 172 YDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFL 231
           Y          W  + V   ++  E                     +   + +    AFL
Sbjct: 122 YSAS----GVDWDMDLVNQTYEWVED--------------TIVYKPNSQSWQSVTKTAFL 163

Query: 232 QAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKK 291
           +AG+   +    ++   + G     +T   +  R +A + ++            +S  K 
Sbjct: 164 EAGVHPNHG---FSLDHEEGTRITGSTFDNKGTRHAADELLNKGNSNNLRVGVHASVEKI 220

Query: 292 ILIDPVTKKACGVLATIKGIDHK---ILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
           I  +     A GV+            + ++ EVI+SAG   +P+LL+LSG+GP+ +L+ L
Sbjct: 221 IFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSL 280

Query: 349 NIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGL 381
           NIPV+ +   VG+ L   +      F V     L
Sbjct: 281 NIPVVLSHPYVGQCLVGKVLDG--DFRVTGINAL 312

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  165 bits (418), Expect = 6e-47
 Identities = 43/308 (13%), Positives = 95/308 (30%), Gaps = 26/308 (8%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGY 127
           ++YD +IVG+GP GCT A  L     +K+ + + G   + L         +        +
Sbjct: 3   IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 61

Query: 128 KTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK---------- 177
               +     L              +  TS   +  + R       D  +          
Sbjct: 62  VNVIQ---GQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRV 118

Query: 178 LGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEA 237
           +G     +    P F + +R  + +    +       +      Y     D F ++    
Sbjct: 119 VGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHN 178

Query: 238 GYP-LVDYNGKTQTGF----------ARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDS 286
                +    K Q  F          +         +     ++  +         +  +
Sbjct: 179 LVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPA 238

Query: 287 SFVKKILIDPVTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHL 345
              ++++ + +  +   + +  +   D   +     +L+AGA ++ +LL+ SG G     
Sbjct: 239 VACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRP 298

Query: 346 NDLNIPVI 353
           N  N P +
Sbjct: 299 NPTNPPEL 306

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  161 bits (407), Expect = 2e-45
 Identities = 48/339 (14%), Positives = 96/339 (28%), Gaps = 62/339 (18%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSP------ 122
               +++G+G GG   A RL++       ++E G  ++       +   ++         
Sbjct: 7   RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 65

Query: 123 -------------LNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNK 169
                               ++         +        G+GVGG SL+N  +     +
Sbjct: 66  ADKTDQPVSNFMGFGINKSIDRYV-GVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 124

Query: 170 RNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
             +++     +    YN    YF +A                        +         
Sbjct: 125 NYFEEILPSVDSNEMYN---KYFPRANTG---------LGVNNIDQAWFESTEWYKFART 172

Query: 230 FLQAGMEAGYP------LVDYNGKTQTGFARAQA--------TLHKRSRRSSAKDYIDPI 275
             +    +G+       + D+    +    +             +   ++S  K Y+   
Sbjct: 173 GRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQA 232

Query: 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILAR-----KEVILSAGAFNS 330
                LT+     V K+           V          ++A        V  +AG+  +
Sbjct: 233 AATGKLTITTLHRVTKVAPAT--GSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGT 290

Query: 331 PKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLAMA 369
            KLL+      Q HL +L+       +VGE     L  A
Sbjct: 291 SKLLVSM--KAQGHLPNLSS------QVGEGWGVLLNKA 321

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score =  157 bits (396), Expect = 5e-44
 Identities = 76/364 (20%), Positives = 122/364 (33%), Gaps = 26/364 (7%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPV---LNTNLILSPLNW 125
            YD+IIVGAGPGG   A+RLSE    K+LLLE G                T+  L+  + 
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSY 185
               E     +      +     +G  VGG + +N  LY   N  ++        +  S+
Sbjct: 61  PGLFESLFTDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVG---WPSSW 117

Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN 245
               PY  K                     G  Y E +  ++   L+        + D  
Sbjct: 118 TNHAPYTSKLSSRLP-------STDHPSTDGQRYLEQSFNVVSQLLKGQGYNQATINDNP 170

Query: 246 GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVL 305
                 F  +        R      Y+     R N T K +  V  ++ +    +  GV 
Sbjct: 171 NYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN--GSQILGVQ 228

Query: 306 ATIKGID----HKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI-PVIKNLRVGE 360
                +       +  +  VILSAGAF + ++L  SGIGP + +  +   P        +
Sbjct: 229 TNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQ 288

Query: 361 NLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSL-SPITNSETLSTNIKTIF 419
           N   +L +   T   +    ++   +     V     L       I +  T +     + 
Sbjct: 289 NQWINLPVGMTTIGSSPQSAVVDSNVK----VFGTNNLFIVDAGIIPHLPTGNPQGTLMS 344

Query: 420 AAHH 423
           AA  
Sbjct: 345 AAEQ 348

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score =  143 bits (360), Expect = 9e-39
 Identities = 55/328 (16%), Positives = 106/328 (32%), Gaps = 41/328 (12%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLI---------- 119
              +++G G G    A RL E    + L+LE G  +N       +   ++          
Sbjct: 3   VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 120 ------LSPLNWGYKTEKEDCR---ACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKR 170
                 L    W     +           +   +     G+GVGG SL+N  +     + 
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAER-IQISELQNSSYHGTQGFIGVDYTEY---NTPM 226
            +++         S      YF +A   ++++ +    +  T+ +     +        +
Sbjct: 122 YFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVSREQAGKAGL 178

Query: 227 LDAFLQAGMEAGYPLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKD 285
              F+    + GY          ++  A      +   ++S  K Y+        +T++ 
Sbjct: 179 GTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTGKVTIQT 238

Query: 286 SSFVKKILIDPVTKKACGVL---ATIKGIDHKILARKEVILSAGAFNSPKLLMLSG-IGP 341
              VK I        A  V       K +  K ++ + + L AG+  S +LL+ +   G 
Sbjct: 239 LHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRARDTGT 298

Query: 342 QEHLNDLNIPVIKNLRVGENLQEHLAMA 369
             +LN           VG      L  A
Sbjct: 299 LPNLNS---------EVGAGWGCVLGKA 317

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.0 bits (113), Expect = 1e-06
 Identities = 14/59 (23%), Positives = 28/59 (47%)

Query: 47  IEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           I++ I  +   +    D     E D ++VGAG  G + A  +S+ P+ ++ ++E     
Sbjct: 11  IKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 69

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           EYD I++G G   C ++  +S     K+L ++   Y+
Sbjct: 6   EYDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNPYY 41

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           +YD I++G G   C ++  LS     K+L ++   ++
Sbjct: 5   DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHY 40

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           YD+IIVG+G  G   AN L ++ + K+L++E  ++ 
Sbjct: 2   YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNHI 36

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 42.0 bits (97), Expect = 7e-05
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           + YD I++G GP G   A   +E     +LLL+ G+  
Sbjct: 1   MHYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNKL 37

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPH-----WKILLLEAGHY 104
           E D +IVGAGP G + A RL ++        ++ L+E   +
Sbjct: 32  EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 47  IEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 105
           I +    +       KD D     D IIVGAG  G + A  +++  P  K+ ++E+    
Sbjct: 28  IRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
           D +I GAG GG + A  L +    K+ LLE+
Sbjct: 3   DILIAGAGIGGLSCALALHQAGIGKVTLLES 33

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
            Y+ +++G G  G  +A  L++  +    L E+G 
Sbjct: 4   HYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGT 37

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
             D ++VG+G  G + A   ++    K++L+E    
Sbjct: 16  TVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPV 50

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
           +D I+VGAG  G     +L++    K LL++A  
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 23/157 (14%), Positives = 45/157 (28%), Gaps = 1/157 (0%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKT 129
           YD I++G G GG   A R +   + K+ L+E        V++  +   ++ +  +     
Sbjct: 2   YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDIL 60

Query: 130 EKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVL 189
           E               P    +       +N +     +K   D +    ++      ++
Sbjct: 61  ENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILI 120

Query: 190 PYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPM 226
              K         L      G    I V         
Sbjct: 121 KGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSP 157

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.4 bits (91), Expect = 5e-04
 Identities = 27/197 (13%), Positives = 52/197 (26%), Gaps = 16/197 (8%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY----FNYLVDIPVLNTNLILSPL 123
           +E + ++VGAGPGG   A R +++   K+ ++E G+      N          +      
Sbjct: 2   IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYE 60

Query: 124 NWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL--GNY 181
              +  E       + +   +        V   +     L            A     N 
Sbjct: 61  QAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANT 120

Query: 182 GWSYNEVLPYFKKAERIQISELQNSSYH-----GTQGF----IGVDYTEYNTPMLDAFLQ 232
               N         +   I+              T       IG+  T      +D   +
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180

Query: 233 AGMEAGYPLVDYNGKTQ 249
             +   + + D      
Sbjct: 181 TSVPNIFAIGDIVPGPA 197

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
             I+VGAG  G + A RLSE     +L+LEA  +
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH 35

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
            YD+I +G G GG    NR +     K  L+EA   
Sbjct: 2   HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKEL 36

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
             D +I+G+G  G   A    +    K++LLE    
Sbjct: 23  TTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPI 57

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           +  +VG G  G  VA+ L        +LLE+    
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSARL 35

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPH----WKILLLEA 101
            D +IVGAGP G   A  LSE        K+ +++ 
Sbjct: 8   CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 43

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
            YD++++G G GG   A R +E+   +  ++E+   
Sbjct: 3   SYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKL 37

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (88), Expect = 0.001
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
             D +I+G+G  G ++A RL++    ++++L  G 
Sbjct: 7   SCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGP 39

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
           ++   +I+G GPGG   A R  ++     +L+E    
Sbjct: 4   IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQAL 39

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 70  YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
            + II+GAG  G   A +L+++    + + + G 
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK 37

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           E D +I+G GPGG   A + +++  +K   +E     
Sbjct: 3   ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGAL 38

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYK 128
            +D +++GAG GG   A   + +   ++ +++       +V  P   + L  + +N G  
Sbjct: 3   IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQ-----MVHGPPFFSALGGTCVNVGCV 57

Query: 129 TEKEDCRAC 137
            +K      
Sbjct: 58  PKKLMVTGA 66

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH 103
            + D  IVGAG  G   A   ++  P+ KI L+   +
Sbjct: 4   FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 68  LEYDFIIVGAGPGGCTVANRLSEIPHW---KILLLEAGH 103
           +E D +I+G G  GC  A   +        K+ L+E   
Sbjct: 20  VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 58

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           EYD +++G GPGG + A   ++    K+ ++E     
Sbjct: 6   EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTL 41

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 73  IIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           +IVGAG  G + A  L+   H ++ +LEA    
Sbjct: 34  VIVGAGMAGLSAAYVLAGAGH-QVTVLEASERP 65

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 71  DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
           D ++VG G  G   A  L +     +++LEA    
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGL-NVVVLEARDRV 34

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
            +D +I+G GP G   A + +++  +    +E  
Sbjct: 5   SHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKR 37

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 1/40 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNY 107
              F+++G G      A  +    P  ++L++       Y
Sbjct: 4   HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPY 43

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 60  SNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
            N D++   EYD I +G G  G   +  L  +   + L+++   + 
Sbjct: 33  YNVDENDPREYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPFL 77

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 73  IIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
            ++GAG  G   A +L       + + EA   
Sbjct: 5   AVIGAGVSGLAAAYKLKIHGL-NVTVFEAEGK 35

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 5/133 (3%)

Query: 73  IIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKE 132
            ++GAGP   + A+ L+ + +  I + E   Y   L    +    L    +N+  +  K+
Sbjct: 8   ALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKD 67

Query: 133 DCRAC-----LGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNE 187
                     L            +G     +   +     + +  +  + +    W   E
Sbjct: 68  LGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPE 127

Query: 188 VLPYFKKAERIQI 200
           V P   +     +
Sbjct: 128 VDPETMQTSEPWV 140

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 69  EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
               ++VGAG  G   +    +     ++L++   +
Sbjct: 19  TTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPF 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	511
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	100.0
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.97
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.96
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.9
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.73
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.68
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.66
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.61
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.57
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.56
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.53
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.52
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.49
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.44
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.44
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.4
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.31
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.1
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.04
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.01
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.65
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.63
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.61
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.53
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.5
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.45
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.44
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.44
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.43
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.43
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.41
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.36
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.33
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.33
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.33
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.32
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.31
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.31
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.28
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.28
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.25
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.23
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.23
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.22
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.21
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.19
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.17
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.16
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.14
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.11
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.08
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.06
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.05
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.02
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.01
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.99
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.97
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.96
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.94
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.93
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.93
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.93
d1kdga2	181	Flavoprotein domain of flavocytochrome cellobiose	97.92
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.92
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.9
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.89
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.87
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.85
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.81
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.77
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.74
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.66
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.63
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.49
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.46
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.28
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.1
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.09
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.05
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.75
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.75
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.53
d2i0za2	169	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	96.43
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.25
d1cf3a2	196	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	96.23
d2gqfa2	148	Hypothetical protein HI0933 {Haemophilus influenza	96.21
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	96.21
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.2
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.18
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.45
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.22
d1gpea2	196	Glucose oxidase {Penicillium amagasakiense [TaxId:	95.19
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.12
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.11
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.0
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.96
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.55
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.25
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.15
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.18
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.84
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.4
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	91.33
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.16
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.74
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	89.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	89.46
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.58
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.39
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.18
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.04
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	85.12
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	85.06
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.95
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	84.61
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	84.09
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.42
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	83.06
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	81.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	80.62
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	80.35

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=1.6e-53  Score=441.24  Aligned_cols=295  Identities=29%  Similarity=0.484  Sum_probs=251.1

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC---cccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN---YLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~---~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      .++|||||||||++||++|.||||+++.+|||||||+...   ....+|........+.++|.|.++|+.       +++
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~-------~~r   94 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLI-------NNR   94 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCT-------TSC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecC-------CCc
Confidence            4579999999999999999999996558999999997643   235677777777788899999998865       578


Q ss_pred             ccccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhccc--------ccCCCCCCCCcc
Q psy760          144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISE--------LQNSSYHGTQGF  214 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~--------~~~~~~~g~~G~  214 (511)
                      .+.|++|+++||+|.+|+|+|.|+++.||+.|.+. |+++|+|++++|||+|+|.+..+.        ..+..+|+..++
T Consensus        95 ~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~  174 (391)
T d1gpea1          95 TNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT  174 (391)
T ss_dssp             CCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSS
T ss_pred             EeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCc
Confidence            89999999999999999999999999999999876 889999999999999999876542        125568888899


Q ss_pred             cccccCC---CCChHHHHHHHHHHHcCCCC-CCCCCCCccceeeccccc-CCCcccchhHHhhHhhhhCCCcEEEeCceE
Q psy760          215 IGVDYTE---YNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATL-HKRSRRSSAKDYIDPIKKRCNLTVKDSSFV  289 (511)
Q Consensus       215 l~v~~~~---~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~-~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V  289 (511)
                      +.+....   ...+..+.+.++.+++|++. .+.+.....+.+...... ..+.|.++..+++.+...+.|++|++++.|
T Consensus       175 ~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~~~~~~~~~~~~~~~~r~s~a~~~~~p~~~r~nl~i~t~a~V  254 (391)
T d1gpea1         175 VQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMV  254 (391)
T ss_dssp             EEEBCCCCSSCBCTHHHHHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEE
T ss_pred             ccccccccccccCHHHHHHHHHHHhcCCceeeccccCcccccccccceeeccccccchhhhccCccccchhhhhhcccee
Confidence            8876543   34678889999999999987 456666666666555544 345678888888988888999999999999


Q ss_pred             EEEEEcCC--CCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc--cchhhhh
Q psy760          290 KKILIDPV--TKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR--VGENLQE  364 (511)
Q Consensus       290 ~~I~~d~~--~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P--VG~nl~D  364 (511)
                      ++|+++++  +.||+||++.. ++.+++++|+||||||||+|+||+|||+|||||+++|+++||++++|+|  ||+||||
T Consensus       255 ~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIGp~~~L~~~gI~~v~dlP~Gvg~nl~d  334 (391)
T d1gpea1         255 GKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGICSMMSR  334 (391)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCTCBSCG
T ss_pred             eEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCCCcHHHHHHCCCCEEEECCccccccccc
Confidence            99998753  24899999874 5677789999999999999999999999999999999999999999999  9999999


Q ss_pred             cccC
Q psy760          365 HLAM  368 (511)
Q Consensus       365 H~~~  368 (511)
                      |+..
T Consensus       335 h~~~  338 (391)
T d1gpea1         335 ELGG  338 (391)
T ss_dssp             GGTC
T ss_pred             Cccc
Confidence            9874

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=8.6e-51  Score=419.84  Aligned_cols=295  Identities=30%  Similarity=0.478  Sum_probs=245.8

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC---cccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN---YLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~---~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      .++|||||||||++||++|.||+|+++++|||||||+...   .....|.....+..+.++|.|.+.++      ..+++
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~------~~~~r   88 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL------ATNNQ   88 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCC------TTTSC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCc------CCCCc
Confidence            4579999999999999999999996668999999997543   23445555555667889999988765      46788


Q ss_pred             ccccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccc--------cCCCCCCCCcc
Q psy760          144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISEL--------QNSSYHGTQGF  214 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~--------~~~~~~g~~G~  214 (511)
                      .+.|++|+++||+|.+|+|.|.|+.+.||+.|++. +..+|+|++++|||+|+|++..+..        .+..+++..++
T Consensus        89 ~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~  168 (385)
T d1cf3a1          89 TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGT  168 (385)
T ss_dssp             CCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSS
T ss_pred             eeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCccc
Confidence            99999999999999999999999999999999988 7899999999999999998765431        24456777788


Q ss_pred             cccccCC---CCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCC-CcccchhHHhhHhhhhCCCcEEEeCceE
Q psy760          215 IGVDYTE---YNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHK-RSRRSSAKDYIDPIKKRCNLTVKDSSFV  289 (511)
Q Consensus       215 l~v~~~~---~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~-g~r~~~~~~~L~~~~~r~gv~v~~~t~V  289 (511)
                      +.+....   ...+..+.+.++++++|++. .+.++....+...++..... ..+..+...++.++.++.|++|++++.|
T Consensus       169 ~~~~~~~~~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~nl~i~t~~~V  248 (385)
T d1cf3a1         169 VHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYV  248 (385)
T ss_dssp             EEEBCCCCSSCBCTHHHHHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTGGGTTCTTEEEEESCEE
T ss_pred             ccccccccccccCHHHHHHHHHHHHcCCCCcCCcccccccccccccccccccccchhhhhhhcCchhcCCcccccCCceE
Confidence            7776433   34678899999999999997 57888777777766655443 4455677789999899999999999999


Q ss_pred             EEEEEcCCC--CcEEEEEEE-ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhc
Q psy760          290 KKILIDPVT--KKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEH  365 (511)
Q Consensus       290 ~~I~~d~~~--~ra~GV~~~-~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH  365 (511)
                      ++|++++++  .|++||++. .+|+.++++|+|+||||||+++||+|||+|||||+++|+++||++++|+| ++.++++|
T Consensus       249 ~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp~~~L~~~gI~~~~dlP~g~~~~~~~  328 (385)
T d1cf3a1         249 GKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLCSMMPK  328 (385)
T ss_dssp             EEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCTCBSCG
T ss_pred             EEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCCcHHHHHHCCCCeEEECCcchhccCCC
Confidence            999998753  389999986 57888899999999999999999999999999999999999999999999 44444444


Q ss_pred             cc
Q psy760          366 LA  367 (511)
Q Consensus       366 ~~  367 (511)
                      +.
T Consensus       329 ~~  330 (385)
T d1cf3a1         329 EM  330 (385)
T ss_dssp             GG
T ss_pred             Cc
Confidence            43

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=100.00  E-value=1.5e-48  Score=398.13  Aligned_cols=275  Identities=27%  Similarity=0.380  Sum_probs=217.4

Q ss_pred             cccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760           64 QDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ  143 (511)
Q Consensus        64 ~~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  143 (511)
                      .++..+|||||||||+||+++|.|||| . .+|||||||+.......++............|.+.+.++.     ...++
T Consensus        21 ~~~~~~YD~IIVGsG~aG~vlA~rLae-~-~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   93 (351)
T d1ju2a1          21 LELEGSYDYVIVGGGTSGCPLAATLSE-K-YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER-----FVSED   93 (351)
T ss_dssp             SCSEEEEEEEEECCSTTHHHHHHHHTT-T-SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEE-----EECTT
T ss_pred             ccccCCccEEEECccHHHHHHHHHhcC-C-CCEEEEecCCCCcCccccccchhhhccCcCCCCCCCcccc-----ccCCC
Confidence            356678999999999999999999999 4 8999999998643222222222222222345555566655     56778


Q ss_pred             ccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCC
Q psy760          144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN  223 (511)
Q Consensus       144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~  223 (511)
                      .+.++||++|||+|.+|+|+|.|+.+.||+.|.    .+|+|+++.|||++.|......                  +..
T Consensus        94 ~~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~~~~------------------~~~  151 (351)
T d1ju2a1          94 GIDNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTIVYK------------------PNS  151 (351)
T ss_dssp             SCEEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHHCBC------------------CCC
T ss_pred             ceeeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeecccccccc------------------ccc
Confidence            899999999999999999999999999999983    5899999999999999764321                  112


Q ss_pred             ChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCC-CCcE
Q psy760          224 TPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPV-TKKA  301 (511)
Q Consensus       224 ~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~-~~ra  301 (511)
                      ......+.+++.+.|++. .+.+.....+..+...++..+.+.++...|+.+ +.+.|++|++++.|++|++++. +.+|
T Consensus       152 ~~~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-a~~~nl~i~~~~~V~rv~~~~~~g~~a  230 (351)
T d1ju2a1         152 QSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHASVEKIIFSNAPGLTA  230 (351)
T ss_dssp             CHHHHHHHHHHHHTTCCCEEEECCBCCSEEEECEESBCTTSBBCCGGGGGGG-SCTTTEEEEESCEEEEEEECCSSSCBE
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccCCCcccccchhhcc-chhhhhhhhccchhhceeeecccccee
Confidence            234455667778888876 355555556666666667666677777778865 5788999999999999999864 3589


Q ss_pred             EEEEEEECC---eEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccC
Q psy760          302 CGVLATIKG---IDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAM  368 (511)
Q Consensus       302 ~GV~~~~~g---~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~  368 (511)
                      +||++...+   ++..++|+|+||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+..
T Consensus       231 ~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIGp~~~L~~~gI~~~~dlPgVG~NL~DH~~~  301 (351)
T d1ju2a1         231 TGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQCLVGKVLD  301 (351)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTESCBTTTBC
T ss_pred             eEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCCCCHHHHHHcCCCeeccCCCcccccccCcCc
Confidence            999998532   24468888899999999999999999999999999999999999999 99999999876

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=100.00  E-value=1.2e-43  Score=362.93  Aligned_cols=260  Identities=27%  Similarity=0.345  Sum_probs=205.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccc----cccccc-cccC---CCCcCCCccccccccccccC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVD----IPVLNT-NLIL---SPLNWGYKTEKEDCRACLGL  140 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~----ip~~~~-~~~~---~~~~w~~~t~p~~~~~~~~~  140 (511)
                      .|||||||||++||++|.|||| .|.+|||||||+.......    .|.... ....   ....|.+.+.++.     ..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae-~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   75 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP-----FW   75 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC-----TT
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-CCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCc-----cc
Confidence            6999999999999999999999 7999999999975432111    111111 1111   1234555666666     56


Q ss_pred             CCCccccCCcceecccccccccccccCCcccchHHhhcCCCCC--ChhchHHHHHHHHhhhcccccCCCCCCCCcccccc
Q psy760          141 KGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVD  218 (511)
Q Consensus       141 ~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~  218 (511)
                      .++.+.+++|++|||+|.+|+|+|.|+.+.||+.|.     +|  +|++++|||+++|+.....    .+++..|++.+ 
T Consensus        76 ~~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~-----gwp~~~~~l~py~~~~e~~~~~~----~~~~~~g~~~~-  145 (360)
T d1kdga1          76 WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV-----GWPSSWTNHAPYTSKLSSRLPST----DHPSTDGQRYL-  145 (360)
T ss_dssp             BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG-----TCCGGGSCCHHHHHHHHHHSCCB----SCCSTTSCCCS-
T ss_pred             CCccccccceeeecchhccccccccccchhhheecc-----cccccccchhhhhhhhhcccccc----ceecCCCcccc-
Confidence            778899999999999999999999999999999884     45  8999999999999986542    24455555432 


Q ss_pred             cCCCCChHHHHHHHHHHHcCCCC---CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEc
Q psy760          219 YTEYNTPMLDAFLQAGMEAGYPL---VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILID  295 (511)
Q Consensus       219 ~~~~~~~~~~~~~~a~~~~G~~~---~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d  295 (511)
                           .+....+.+.+++.|+..   .+.+.....++.++..++.+|.|+++..+||.++.++.|++|++++.|++|+++
T Consensus       146 -----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~G~R~s~~~~yl~~a~~r~nl~i~t~~~V~rI~~d  220 (360)
T d1kdga1         146 -----EQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN  220 (360)
T ss_dssp             -----CHHHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE
T ss_pred             -----cchhHHHHHHHHHhhccCCCcccCCCccccccceeeeeccccccccccchhhhhhhcccccccccCcEEEEEEEe
Confidence                 344556667777777653   344455566777888888899999999999999889999999999999999998


Q ss_pred             CCCCcEEEEEEEE----CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCC
Q psy760          296 PVTKKACGVLATI----KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIP  351 (511)
Q Consensus       296 ~~~~ra~GV~~~~----~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~  351 (511)
                      +  ++|+||++..    .++..++.|+|+||||||+++||+|||+|||||+++|+.+||.
T Consensus       221 ~--~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp~~~L~~~gi~  278 (360)
T d1kdga1         221 G--SQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSN  278 (360)
T ss_dssp             T--TEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTS
T ss_pred             C--CEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCchhhhHHhhcC
Confidence            7  7999999974    2456688888899999999999999999999999999999985

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.97  E-value=2e-31  Score=271.87  Aligned_cols=254  Identities=16%  Similarity=0.138  Sum_probs=172.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCccccccccccc-------------------ccCCCCcCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTN-------------------LILSPLNWGY  127 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~-------------------~~~~~~~w~~  127 (511)
                      -++|||||||||++|+++|.+|+| +|++|||||||.........+.....                   .....+.|.+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINK   83 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCc
Confidence            357999999999999999999999 89999999999654211111100000                   0011223444


Q ss_pred             ccccccccccccCCCCccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCC
Q psy760          128 KTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSS  207 (511)
Q Consensus       128 ~t~p~~~~~~~~~~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~  207 (511)
                      ...+.. ........+.+.+++|+++||+|.+|++.+.|+.+.||+.|...   .+.++++.+||+++|+.......+  
T Consensus        84 ~~~~~~-~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~~---~~~~~~~~~~y~~~e~~lgv~~~~--  157 (370)
T d3coxa1          84 SIDRYV-GVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILPS---VDSNEMYNKYFPRANTGLGVNNID--  157 (370)
T ss_dssp             BCCCCB-CSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCTT---SCHHHHHHTHHHHHHHHHTCBCCC--
T ss_pred             cccccc-ccccccCCCcceeeeeccccccccccCceeccCCHHHhhccccc---CCcHHHHHHHHHHHHHhcCCcccc--
Confidence            444333 33334455677888999999999999999999999999999642   234677899999999987653211  


Q ss_pred             CCCCCcccccccCCCCChHHHHHHHHHHHcCCCCC--CCC-----------C-CCccceeecccccCCCcccchhHHhhH
Q psy760          208 YHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLV--DYN-----------G-KTQTGFARAQATLHKRSRRSSAKDYID  273 (511)
Q Consensus       208 ~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~--~~~-----------~-~~~~G~~~~~~~~~~g~r~~~~~~~L~  273 (511)
                             ..........+..+.+.+...+.|++..  +..           + .....++.+...+..+.+.++..+||.
T Consensus       158 -------~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~s~~~~~L~  230 (370)
T d3coxa1         158 -------QAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLA  230 (370)
T ss_dssp             -------HHHHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSTTTTCSTTCCSSSBCCGGGTHHH
T ss_pred             -------CCcccCCCCccHHHHHHHHHHHcCCccccccccccccccccccccccccceecccccccccccccChHHHHHH
Confidence                   1111122234566778888888887642  110           0 011111122233445667888888998


Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE---CC---eEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI---KG---IDHKILARKEVILSAGAFNSPKLLMLS  337 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---~g---~~~~v~A~k~VILAAGa~~SP~LL~~S  337 (511)
                      ++.++.|++|+++++|++|++++  +++++|.+..   .+   +..+++|+ +||||||+++||+|||+|
T Consensus       231 ~a~~~g~~~i~t~~~V~~I~~~~--~~~~~V~v~~~~~~~~~~~~~~~~A~-~VILaAGai~Tp~LLL~S  297 (370)
T d3coxa1         231 QAAATGKLTITTLHRVTKVAPAT--GSGYSVTMEQIDEQGNVVATKVVTAD-RVFFAAGSVGTSKLLVSM  297 (370)
T ss_dssp             HHHHTTCEEEECSEEEEEEEECS--SSSEEEEEEEECTTSCEEEEEEEEEE-EEEECSHHHHHHHHHHHH
T ss_pred             HHHhCCCcEEEecCcEEEEEEcC--CCeEEEEEEEeCCccceeeEEEEECC-EEEEeeCHHHhHHHHHhC
Confidence            88888889999999999999997  4445555542   11   33578996 799999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.96  E-value=7.7e-30  Score=259.63  Aligned_cols=274  Identities=20%  Similarity=0.146  Sum_probs=178.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCccc-cccccccccc-CCCCcCCC--cccc--------------
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV-DIPVLNTNLI-LSPLNWGY--KTEK--------------  131 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~-~ip~~~~~~~-~~~~~w~~--~t~p--------------  131 (511)
                      +||||||||++|+++|.+|+| +|++|+|||||....... ..+....... .....|..  ...+              
T Consensus         3 v~VIVVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNI   81 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBC
T ss_pred             CeEEEeCcCHHHHHHHHHHHH-CcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCccc
Confidence            799999999999999999999 899999999997543211 1111100000 00111111  0000              


Q ss_pred             --ccccccccCCCCccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCC
Q psy760          132 --EDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYH  209 (511)
Q Consensus       132 --~~~~~~~~~~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~  209 (511)
                        .. ........+.+.+++|+++||+|.+|++.+.|+.+.+|+.|..   ..|.++++.|||+++|+...+...     
T Consensus        82 ~~~~-g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~~-----  152 (367)
T d1n4wa1          82 DPYA-GVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNHI-----  152 (367)
T ss_dssp             CCCB-CSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCC-----
T ss_pred             cccc-CccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCCC-----
Confidence              00 0111233456678899999999999999999999999999853   233578899999999998765321     


Q ss_pred             CCCcccccccCCCCChHHHHHHHHHHHcCCCCCCCC-------------CC-CccceeecccccCCCcccchhHHhhHhh
Q psy760          210 GTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN-------------GK-TQTGFARAQATLHKRSRRSSAKDYIDPI  275 (511)
Q Consensus       210 g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~-------------~~-~~~G~~~~~~~~~~g~r~~~~~~~L~~~  275 (511)
                          +..........+..+.+.+.....|+......             +. ....++.....+..+.+.++...||.++
T Consensus       153 ----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~k~s~~~~yl~~a  228 (367)
T d1n4wa1         153 ----DTKWFEDTEWYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAA  228 (367)
T ss_dssp             ----CHHHHHHCGGGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSSBCCTTTTHHHHH
T ss_pred             ----CCCccccCCCChHHHHHHHHHHHcCcccccccchhhcCCcccccccccCcccccccccccccccccChhHhhhHHH
Confidence                11111112223455667777788877642110             10 1111111112234456778888899888


Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC----CeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK----GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIP  351 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~----g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~  351 (511)
                      .++.|++|+++|.|++|+++++++++++|++...    +++++++|+ +||||||+++||+|||+|.-       ..++ 
T Consensus       229 ~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak-~VVLaAGai~Tp~LLl~S~~-------~g~l-  299 (367)
T d1n4wa1         229 LGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCR-YLFLGAGSLGSTELLVRARD-------TGTL-  299 (367)
T ss_dssp             HHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEE-EEEECSHHHHHHHHHHHHHH-------TTSS-
T ss_pred             HhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecC-EEEEecchhcCHHHHHhCCC-------CCCC-
Confidence            8888899999999999999886566777777642    234578896 79999999999999999931       0011 


Q ss_pred             ccccC-c-cchhhhhcccC
Q psy760          352 VIKNL-R-VGENLQEHLAM  368 (511)
Q Consensus       352 vv~~~-P-VG~nl~DH~~~  368 (511)
                        .++ + +|+|+.||...
T Consensus       300 --~~~s~~lG~~~~~~l~~  316 (367)
T d1n4wa1         300 --PNLNSEVGAGWGCVLGK  316 (367)
T ss_dssp             --TTCCTTTTCCBSSCTTT
T ss_pred             --CCccHhhcCCccccccc
Confidence              123 3 89998888654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.90  E-value=1.2e-24  Score=220.44  Aligned_cols=266  Identities=19%  Similarity=0.147  Sum_probs=145.9

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCccc--cccccccc-----------cc-------CCCCc-
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV--DIPVLNTN-----------LI-------LSPLN-  124 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~--~ip~~~~~-----------~~-------~~~~~-  124 (511)
                      |+.+|||||||||++|+++|.+||+ +|+||||||+|+......  ..+.....           ..       ..... 
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~-~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTL   79 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCC
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhh-CCCeEEEEecCCCCCCcccccchhhccccccccccccccccccccccccccccc
Confidence            4678999999999999999999999 899999999997553211  00100000           00       00000 


Q ss_pred             ---------CCCccccccc--cccccCCCCccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHH
Q psy760          125 ---------WGYKTEKEDC--RACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFK  193 (511)
Q Consensus       125 ---------w~~~t~p~~~--~~~~~~~~~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~  193 (511)
                               |.........  ............+.+++.+||.+..|.+.+.|+.+.|++.+......+ .-......|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~-~~~~~~~~~~  158 (379)
T d2f5va1          80 VVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADA-DDAEWDRLYT  158 (379)
T ss_dssp             CCCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHH-HHHHHHHHHH
T ss_pred             cccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCc-cCCcCccchh
Confidence                     0000000000  000000111122345678999999999999999998887664321000 0011223444


Q ss_pred             HHHhhhcccccCCCCCCCCcccccccCCCCChHHHHHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHH---
Q psy760          194 KAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKD---  270 (511)
Q Consensus       194 k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~---  270 (511)
                      ..+.+.....   ...            ........+.+...........+.... .......   ....+......   
T Consensus       159 ~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~  219 (379)
T d2f5va1         159 KAESYFQTGT---DQF------------KESIRHNLVLNKLAEEYKGQRDFQQIP-LAATRRS---PTFVEWSSANTVFD  219 (379)
T ss_dssp             HHHHHHTEES---CTT------------TTCHHHHHHHHHHHHHTTTSSCCEECC-EEEEEEE---TTEEEECCHHHHCC
T ss_pred             hhhhhhhHHH---HHH------------HHHHHhcCCCCCcccccccccCccccc-chhccCC---CCCCCcCCCCcccc
Confidence            4444432210   000            001112222233322211111000000 0000000   00001111111   


Q ss_pred             ---hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCcccc
Q psy760          271 ---YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHL  345 (511)
Q Consensus       271 ---~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L  345 (511)
                         .+...+.+.|++|++++.|++|++++++++|+||++.+  ++++++++|+ +||||+|+++||+||++|||++...+
T Consensus       220 ~~~~~~~~~~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~-~vilaaGa~~tp~lL~~Sg~~~~~~~  298 (379)
T d2f5va1         220 LQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKAD-VYVLTAGAVHNTQLLVNSGFGQLGRP  298 (379)
T ss_dssp             CCCEEETTEEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEE-EEEECSCHHHHHHHHHHTTSSCCSSC
T ss_pred             hhhcchHHhcCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEece-EEEeccCccCCHHHHhhccccccccc
Confidence               11223456799999999999999987667999999874  5777889995 89999999999999999999998887


Q ss_pred             ccCCCCcc
Q psy760          346 NDLNIPVI  353 (511)
Q Consensus       346 ~~~gi~vv  353 (511)
                      ....++..
T Consensus       299 ~~~~~~~~  306 (379)
T d2f5va1         299 NPTNPPEL  306 (379)
T ss_dssp             CTTSCCSS
T ss_pred             ccccCccc
Confidence            76665543

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.73  E-value=1.4e-17  Score=164.11  Aligned_cols=59  Identities=19%  Similarity=0.142  Sum_probs=48.3

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHH
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      +...+.+.|++|+++++|++|+.+++ ++|+||.+.. ++...+|+|+ .||||||+|....
T Consensus       151 l~~~a~~~gv~i~~~~~v~~li~~~~-G~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~  210 (308)
T d1y0pa2         151 LYDNAVKRNIDLRMNTRGIEVLKDDK-GTVKGILVKGMYKGYYWVKAD-AVILATGGFAKNN  210 (308)
T ss_dssp             HHHHHHHTTCEEESSEEEEEEEECTT-SCEEEEEEEETTTEEEEEECS-EEEECCCCCTTCH
T ss_pred             HHHHHHhccceEEEeeccchhhhhcc-cccccccccccccceeEeecC-eEEEccCcccccH
Confidence            33446678999999999999998764 7999999875 4566789996 7999999997644

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.68  E-value=7.4e-17  Score=160.09  Aligned_cols=62  Identities=24%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ..|...+.+.|++|+++++|++|+.+++ ++|+||.+.. +++...|+|+ .||||||+|....-
T Consensus       156 ~~l~~~a~~~gv~i~~~t~v~~li~d~~-G~V~Gv~~~~~~~~~~~i~Ak-~VIlAtGG~~~n~~  218 (322)
T d1d4ca2         156 QVLWDNAVKRGTDIRLNSRVVRILEDAS-GKVTGVLVKGEYTGYYVIKAD-AVVIAAGGFAKNNE  218 (322)
T ss_dssp             HHHHHHHHHTTCEEETTEEEEEEECCSS-SCCCEEEEEETTTEEEEEECS-EEEECCCCCTTCHH
T ss_pred             HHHHHHHHhcCceEEEeeeccccccccc-ccccceEEEeecccEEEEeCC-eEEEcCCCcccCHH
Confidence            3455556678999999999999998764 7999999875 4566678995 79999999976443

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.66  E-value=2.1e-16  Score=156.53  Aligned_cols=63  Identities=19%  Similarity=0.206  Sum_probs=50.5

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPK  332 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~  332 (511)
                      ....|...+++.|++++++++|++|+.+++ ++|+||.+.. +++.+.+.|+ .||||||+|....
T Consensus       150 i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~-g~V~Gv~~~~~~~~~~~i~Ak-~VVlAtGG~~~n~  213 (317)
T d1qo8a2         150 IIDTLRKAAKEQGIDTRLNSRVVKLVVNDD-HSVVGAVVHGKHTGYYMIGAK-SVVLATGGYGMNK  213 (317)
T ss_dssp             HHHHHHHHHHHTTCCEECSEEEEEEEECTT-SBEEEEEEEETTTEEEEEEEE-EEEECCCCCTTCH
T ss_pred             hhHHHHHHhhhccceeeeccchhheeeccc-ccceeeEeecccceEEEEecc-ceEEeccccccCH
Confidence            334555667789999999999999988764 8999999885 4566678895 8999999997544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.61  E-value=4e-15  Score=144.00  Aligned_cols=199  Identities=18%  Similarity=0.149  Sum_probs=110.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcccc
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPW  147 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~  147 (511)
                      .+|||||||||++|+++|++|++ .|.+|+||||.......                                       
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~-~G~~V~viE~~~~~~~~---------------------------------------   41 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDPPHTN---------------------------------------   41 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCSSCSS---------------------------------------
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCCCcc---------------------------------------
Confidence            47999999999999999999999 89999999997542210                                       


Q ss_pred             CCcceeccccccccccccc--CCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCCh
Q psy760          148 PSGKGVGGTSLINTMLYTR--GNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTP  225 (511)
Q Consensus       148 ~rGk~lGGsS~~n~~~~~r--~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~  225 (511)
                             |++.-+..++..  ....++..+..         .-..+++..++....     ......|.+..... ....
T Consensus        42 -------~s~~~~~~~~~~~~~~~~~~~~l~~---------~s~~~~~~l~~e~~~-----~~~~~~g~l~~~~~-~~~~   99 (281)
T d2gf3a1          42 -------GSHHGDTRIIRHAYGEGREYVPLAL---------RSQELWYELEKETHH-----KIFTKTGVLVFGPK-GESA   99 (281)
T ss_dssp             -------SSSCSSEEEECSSCTTCGGGHHHHH---------HHHHHHHHHHHHCSS-----CCEECCCEEEEEET-TCCH
T ss_pred             -------cccCCCcceeecccCCcchhhhhcc---------cccceeecchhhhhh-----ccccccceeeeeec-chhh
Confidence                   000000001100  01111111111         112233333332221     11122344443322 2345


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC------------CCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEE
Q psy760          226 MLDAFLQAGMEAGYPLVDYNG------------KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKIL  293 (511)
Q Consensus       226 ~~~~~~~a~~~~G~~~~~~~~------------~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~  293 (511)
                      ......+..++.|++...++.            ....+..+.+...  ..........|...+++.|++++++++|++|.
T Consensus       100 ~~~~~~~~~~~~g~~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g--~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~  177 (281)
T d2gf3a1         100 FVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNSG--VLFSENCIRAYRELAEARGAKVLTHTRVEDFD  177 (281)
T ss_dssp             HHHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTCE--EEEHHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred             hhhhhhhhhccccchhhhhhhHhhhhhhhcccccccceeeeccccc--cccccccccccccccccccccccCCcEEEEEE
Confidence            566777888888877532221            1111111111100  01122334455566788999999999999999


Q ss_pred             EcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          294 IDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       294 ~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      .+++  +   |.+..++.  +++|+ .||+|||+ +|++|+..-|+
T Consensus       178 ~~~~--~---v~V~t~~g--~i~a~-~VViAaG~-~s~~l~~~lg~  214 (281)
T d2gf3a1         178 ISPD--S---VKIETANG--SYTAD-KLIVSMGA-WNSKLLSKLNL  214 (281)
T ss_dssp             ECSS--C---EEEEETTE--EEEEE-EEEECCGG-GHHHHGGGGTE
T ss_pred             EECC--E---EEEEECCc--EEEcC-EEEECCCC-cchhhHHhcCC
Confidence            8873  3   34444444  58897 69999997 58888776554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.57  E-value=8.5e-16  Score=148.22  Aligned_cols=65  Identities=14%  Similarity=0.065  Sum_probs=48.6

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCc
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQ  342 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~  342 (511)
                      ...|...+++.|++|+.+++|++|..++   ++++|++  ++.  +++|+ .||+|||+ +|++|+...|+.+.
T Consensus       154 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~~~V~t--~~g--~i~a~-~vV~AaG~-~s~~l~~~~G~~~~  218 (276)
T d1ryia1         154 CKAYVKAAKMLGAEIFEHTPVLHVERDG---EALFIKT--PSG--DVWAN-HVVVASGV-WSGMFFKQLGLNNA  218 (276)
T ss_dssp             HHHHHHHHHHTTCEEETTCCCCEEECSS---SSEEEEE--TTE--EEEEE-EEEECCGG-GTHHHHHHTTCCCC
T ss_pred             hhHHHHHHHHcCCEEecceEEEeEEeec---ceEEEec--CCe--EEEcC-EEEECCCc-cHHHHHhhcCCCcc
Confidence            3345556778999999999999998664   4556654  333  68997 69999997 68999988776443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.57  E-value=4.8e-15  Score=145.19  Aligned_cols=63  Identities=21%  Similarity=0.163  Sum_probs=50.4

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI  339 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI  339 (511)
                      ...+...+++.|++|+.+++|++|..++  +++++|++.  ..  +++|+ .||+|||+ +|++|+.+.|+
T Consensus       151 ~~~l~~~a~~~gv~i~~~~~V~~i~~~~--~~v~~V~T~--~g--~i~a~-~VV~aaG~-~s~~l~~~~g~  213 (305)
T d1pj5a2         151 VQLLIKRTESAGVTYRGSTTVTGIEQSG--GRVTGVQTA--DG--VIPAD-IVVSCAGF-WGAKIGAMIGM  213 (305)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEET--TE--EEECS-EEEECCGG-GHHHHHHTTTC
T ss_pred             hhhHHhhhhcccccccCCceEEEEEEeC--CEEEEEecc--ce--eEECC-EEEEecch-hHHHHHHHcCC
Confidence            3345556678899999999999999987  789998752  33  68998 69999997 59999987664

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.56  E-value=1.2e-15  Score=146.03  Aligned_cols=85  Identities=14%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccc
Q psy760          267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN  346 (511)
Q Consensus       267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~  346 (511)
                      ....+|...+++.|++|+++++|++|...+++..+. +.+..+++  +++|+ .||+|+|+...|++- .+|.| -..++
T Consensus       110 ~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~-~~~~~~~~--~~~a~-~VIiAtGG~S~p~~G-~~g~g-~~~a~  183 (253)
T d2gqfa1         110 QIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNST--QWQCK-NLIVATGGLSMPGLG-ATPFG-YQIAE  183 (253)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTE--EEEES-EEEECCCCSSCGGGT-CCSHH-HHHHH
T ss_pred             HHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeE-EEEecCCE--EEEeC-EEEEcCCcccccccC-CCchH-HHHHH
Confidence            344566666778899999999999998876533333 33444554  68897 699999999888752 11111 01256


Q ss_pred             cCCCCccccCc
Q psy760          347 DLNIPVIKNLR  357 (511)
Q Consensus       347 ~~gi~vv~~~P  357 (511)
                      ++||+++.+.|
T Consensus       184 ~~~~~i~~~~~  194 (253)
T d2gqfa1         184 QFGIPVIPPRA  194 (253)
T ss_dssp             HTTCCEEEEEE
T ss_pred             hcccccccccc
Confidence            78888877665

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.53  E-value=4.5e-15  Score=141.10  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=46.8

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ....|...+++.|++|+++++|++|..++  +++.+|... +++  +++|+ .||+|+|+...|++
T Consensus       112 i~~~L~~~~~~~gv~i~~~~~v~~i~~~~--~~~~~v~~~-~g~--~i~a~-~vI~AtGg~S~p~~  171 (251)
T d2i0za1         112 VVDALLTRLKDLGVKIRTNTPVETIEYEN--GQTKAVILQ-TGE--VLETN-HVVIAVGGKSVPQT  171 (251)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEET--TEEEEEEET-TCC--EEECS-CEEECCCCSSSGGG
T ss_pred             HHHHHHHHHHHcCCcccCCcEEEEEEEEC--CEEEEEEeC-CCC--eEecC-eEEEccCCcccccc
Confidence            34455566778899999999999999887  677777654 343  68897 59999999988863

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=6.2e-14  Score=138.30  Aligned_cols=57  Identities=23%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760          270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~  329 (511)
                      ..+..+.++.+++|+.++.|++|+.++  ++++||....  +|+.+.+.|+ .||||||++.
T Consensus       139 ~~l~~~~~~~~v~i~~~~~v~~Ll~d~--g~v~Gvv~~~~~~g~~~~~~Ak-aVILATGG~g  197 (311)
T d1kf6a2         139 TLFQTSLQFPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAG  197 (311)
T ss_dssp             HHHHHHTTCTTEEEEETEEEEEEEEET--TEEEEEEEEETTTTEEEEEECS-CEEECCCCCG
T ss_pred             hHHHHHHccCcceeEeeeEeeeeEecC--CcceeEEEEEcCCCcEEEEECC-EEEEcCCCcc
Confidence            345555667899999999999999987  8999998764  5777788895 7999999974

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.49  E-value=1e-13  Score=137.44  Aligned_cols=56  Identities=11%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~  329 (511)
                      .|...+++.|++|+.++.|++++.++  ++++|+.+..  +|+...+.|+ .||||||++.
T Consensus       163 ~l~~~~~~~gv~i~~~~~~~~li~~~--~~v~g~~~~~~~~g~~~~i~Ak-~VvlATGG~~  220 (336)
T d2bs2a2         163 AVANECLKLGVSIQDRKEAIALIHQD--GKCYGAVVRDLVTGDIIAYVAK-GTLIATGGYG  220 (336)
T ss_dssp             HHHHHHHHHTCEEECSEEEEEEEEET--TEEEEEEEEETTTCCEEEEECS-EEEECCCCCG
T ss_pred             HHHHHHHhccccccceeeeeeccccc--ccccceeEEeccCCcEEEEecC-eEEEeccccc
Confidence            34445677899999999999999987  7899888864  5777789995 8999999985

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=3.1e-13  Score=126.03  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=37.3

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      |.++|||||||||++|+++|++||+ .|++|+||||++...
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~-~G~~V~vlE~~~~~G   41 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQDHYG   41 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEcCCCCCC
Confidence            6789999999999999999999999 899999999987664

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.1e-13  Score=130.90  Aligned_cols=57  Identities=18%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             hHhhhhCCCcEEEeCceEEEEEEcCC-----CCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760          272 IDPIKKRCNLTVKDSSFVKKILIDPV-----TKKACGVLATI--KGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       272 L~~~~~r~gv~v~~~t~V~~I~~d~~-----~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~  329 (511)
                      +....++.+++++.++.+++|+.+++     .++|+||....  +++.+.+.+ |.||||+|++.
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~a-k~VilAtGG~~  207 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGAS  207 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCG
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEee-cceEEeeeccc
Confidence            44456788999999999999999863     14899998864  456666777 58999999975

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.1e-12  Score=126.79  Aligned_cols=59  Identities=14%  Similarity=0.104  Sum_probs=44.7

Q ss_pred             HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760          269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      ...|...+++.+++++.++.+++++.+++ ++++|+...  .+++...+.|+ .||||+|++.
T Consensus       146 ~~~L~~~~~~~~v~~~~~~~~~~l~~~~~-~~~~g~~~~~~~~g~~~~~~a~-~vIlAtGG~~  206 (330)
T d1neka2         146 LHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTALCIETGEVVYFKAR-ATVLATGGAG  206 (330)
T ss_dssp             HHHHHHHHHHTTCEEECSEEEEEEEECTT-SCEEEEEEEETTTCCEEEEEES-CEEECCCCCG
T ss_pred             HHHHHHHHHhcCCeEEEEEEEEEeeeecc-ccceeeeeEEccCCcEEEEecc-EEEEcCCCcc
Confidence            33454556678999999999999988654 566666544  35777788896 7999999975

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.28  E-value=1.1e-11  Score=123.43  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             hhCCCcEEEeCceEEEEEEcCC-CCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPV-TKKACGVLAT--IKGIDHKILARKEVILSAGAFN  329 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~-~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~  329 (511)
                      ....+..++..+.+++++.... .+++.++...  .+|+.+.|+|+ .||||||++.
T Consensus       162 ~~~~~~~i~~~~~~~~l~~~~~~~~~v~~~~~~~~~~G~~~~i~Ak-~VILATGG~~  217 (356)
T d1jnra2         162 MAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAK-AVILATGGAT  217 (356)
T ss_dssp             HHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECS-EEEECCCCBC
T ss_pred             hhhcceEEEEEEEEEEeeeecccccceeeeEEEEeecCcEEEeeCC-EEEEcCCCcc
Confidence            3456778888999999886542 3567776654  35777789995 8999999975

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.10  E-value=5.2e-11  Score=113.80  Aligned_cols=61  Identities=18%  Similarity=0.168  Sum_probs=45.2

Q ss_pred             hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760          271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM  335 (511)
Q Consensus       271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~  335 (511)
                      .+...+++.|++|+++++|++|..+++  +++ |.+..+++..++.|+ .||+|+++..+++||.
T Consensus       224 ~~~~l~~~~g~~i~~~~~V~~I~~~~~--~~~-v~~~~~~~~~~~~ad-~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         224 LIDALAASLGDAAHVGARVEGLAREDG--GWR-LIIEEHGRRAELSVA-QVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHHHHHHHGGGEESSEEEEEEECC----CCE-EEEEETTEEEEEECS-EEEECSCHHHHHHHHT
T ss_pred             HHHHHHHHhhcccccCCEEEEEEEeCC--eEE-EEEEcCCeEEEEECC-EEEECCCHHHHHHhcc
Confidence            334445666899999999999988763  333 445667777789998 6999999888888764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.04  E-value=4.5e-10  Score=104.39  Aligned_cols=33  Identities=33%  Similarity=0.482  Sum_probs=31.5

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .|||||||||.||+.||+.+|+ .|.+|+|||..
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR-~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-CCCcEEEEEec
Confidence            5999999999999999999999 89999999975

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.01  E-value=5.5e-10  Score=108.78  Aligned_cols=39  Identities=28%  Similarity=0.311  Sum_probs=35.6

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++++++||||||||++|+++|.+|.+ .|.+|+|+||++.
T Consensus         3 ~p~~~~dV~IIGAG~sGl~~a~~L~~-~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           3 QPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD   41 (298)
T ss_dssp             CCCSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEEcCCC
Confidence            34568999999999999999999999 8999999999865

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.95  E-value=4.9e-10  Score=107.75  Aligned_cols=37  Identities=30%  Similarity=0.523  Sum_probs=33.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++||||||||++|+++|++||++.|++|+|||+++.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            5899999999999999999999746999999999864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.65  E-value=1.1e-08  Score=96.90  Aligned_cols=33  Identities=36%  Similarity=0.718  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ||+||||||+||+++|.++|+ .|++|+|+|++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~-~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            999999999999999999999 899999999863

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.63  E-value=1.6e-07  Score=91.99  Aligned_cols=62  Identities=15%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE---CCeEEEEEeCcEEEEccCCCCcHHH
Q psy760          268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI---KGIDHKILARKEVILSAGAFNSPKL  333 (511)
Q Consensus       268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---~g~~~~v~A~k~VILAAGa~~SP~L  333 (511)
                      ...||...+++.+..|+.+++|++|..++  ++.. |.+..   +++..+..++ .||+|+|.+..|.+
T Consensus       115 ~~~yl~~~~~~~~~~I~~~t~V~~v~~~~--~~w~-Vt~~~~~~~~~~~~~~~d-~VI~AtG~~s~p~~  179 (335)
T d2gv8a1         115 IQEYQRIYAQPLLPFIKLATDVLDIEKKD--GSWV-VTYKGTKAGSPISKDIFD-AVSICNGHYEVPYT  179 (335)
T ss_dssp             HHHHHHHHHGGGGGGEECSEEEEEEEEET--TEEE-EEEEESSTTCCEEEEEES-EEEECCCSSSSBCC
T ss_pred             HHHHHHHHHHHhhhcccCceEEEEEEecC--CEEE-EEEEecCCCCeEEEEEee-EEEEccccccccee
Confidence            34577666666778899999999999876  4422 44443   2334456787 79999999877753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.61  E-value=7e-09  Score=100.40  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=33.7

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+|||||||++|+++|++|++ .|++|+||||.+...
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~-~G~~V~vlE~~~~~G   66 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERPG   66 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHH-HTCEEEEECSSSSSB
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCCCC
Confidence            3589999999999999999999 899999999987654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.53  E-value=2.2e-07  Score=78.76  Aligned_cols=48  Identities=19%  Similarity=0.293  Sum_probs=37.8

Q ss_pred             hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccC
Q psy760          275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAG  326 (511)
Q Consensus       275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAG  326 (511)
                      ..++.|+++++++.|++|....++++++.|.+.+ |+  ++.++ .||+|+|
T Consensus        86 ~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~-G~--~i~~D-~vi~a~G  133 (133)
T d1q1ra2          86 LHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCED-GT--RLPAD-LVIAGIG  133 (133)
T ss_dssp             HHHHHTCEEECSCCEEEEEECTTTCCEEEEEETT-SC--EEECS-EEEECCC
T ss_pred             cccccccEEEeCCeEEEEEEeCCCceEEEEECCC-CC--EEECC-EEEEeeC
Confidence            3456799999999999998876557788776643 44  68898 6999988

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.50  E-value=2.7e-08  Score=99.84  Aligned_cols=40  Identities=35%  Similarity=0.543  Sum_probs=34.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhc-----CCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSE-----IPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe-----~~G~~VLVLEaG~~~~  106 (511)
                      ..+|||||||||+||+++|++||+     +.|++|+||||+..+.
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG   74 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG   74 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence            347999999999999999999985     3799999999997643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=3.6e-08  Score=91.10  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=35.1

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.++|||||||||+||+++|.+|++ .|++|+|+|+.+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~-~G~kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            5678999999999999999999999 8999999998754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.44  E-value=1.3e-06  Score=72.32  Aligned_cols=51  Identities=22%  Similarity=0.170  Sum_probs=40.8

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccC
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAG  326 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAG  326 (511)
                      ...++.|+++++++.|++|..+++ +++..+.....+...++.|+ .||+|+|
T Consensus        71 ~~l~~~gI~v~~~~~v~~i~~~~~-~~~~~~~~~~~~~~~~i~~D-~Vi~a~G  121 (121)
T d1mo9a2          71 DRMKEQGMEIISGSNVTRIEEDAN-GRVQAVVAMTPNGEMRIETD-FVFLGLG  121 (121)
T ss_dssp             HHHHHTTCEEESSCEEEEEEECTT-SBEEEEEEEETTEEEEEECS-CEEECCC
T ss_pred             hhhhccccEEEcCCEEEEEEecCC-ceEEEEEEEeCCCCEEEEcC-EEEEEEC
Confidence            344667999999999999998765 67777776666666689998 6999987

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=5.5e-08  Score=90.26  Aligned_cols=36  Identities=28%  Similarity=0.522  Sum_probs=33.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      +||+||||||+||+++|.++|+ .|++|+|||+++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~-~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGG-GCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            6999999999999999999999 89999999998653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.43  E-value=1.4e-06  Score=72.09  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=31.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -.++|||||..||-.|..|++ .|.+|.|+|+.+.
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~-~G~~Vtiv~~~~~   56 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWAR-LGAEVTVLEAMDK   56 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             CeEEEECCChHHHHHHHHHHH-cCCceEEEEeecc
Confidence            359999999999999999999 8999999998853

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.43  E-value=1.6e-06  Score=71.45  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=31.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..|++ .|.+|+|+|+++.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~   56 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYAN-FGTKVTILEGAGE   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             eEEEECCCccceeeeeeecc-cccEEEEEEecce
Confidence            59999999999999999999 8999999999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.41  E-value=6.4e-08  Score=88.80  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=33.6

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +.||+||||||+||+++|.+|++ .|++|+|||+...
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar-~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-HTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            57999999999999999999999 8999999999754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.36  E-value=1e-07  Score=87.33  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      ++||+||||||+||+.+|.+|++ .|.+|+|+|++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~-~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEeccC
Confidence            47999999999999999999999 899999999974

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.33  E-value=9.5e-08  Score=91.39  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=32.0

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||+|||||++|+++|..|++ .|++|+||||.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~-~G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            3699999999999999999999 899999999975

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.33  E-value=1.2e-07  Score=86.91  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=33.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ++|||||||||+||+.+|..+++ .|.+|+|||+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~-~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            47999999999999999999999 8999999999754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-07  Score=89.87  Aligned_cols=39  Identities=28%  Similarity=0.334  Sum_probs=35.5

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .++.+|||||||.+||+||++|++ .|++|+||||.+...
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~-~G~~V~VlEa~~r~G   41 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRVG   41 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSSB
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCCCc
Confidence            456889999999999999999999 899999999987764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.6e-07  Score=90.72  Aligned_cols=37  Identities=38%  Similarity=0.574  Sum_probs=34.3

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      |||||||||++||++|.+|++ .|++|+|+|+.+..+.
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~-~g~~V~iiEk~~~iGG   38 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRNHIGG   38 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG-GTCCEEEECSSSSSSG
T ss_pred             ccEEEECCcHHHHHHHHHHHh-CCCcEEEEECCCCccc
Confidence            899999999999999999999 7999999999877653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.31  E-value=1.3e-07  Score=87.40  Aligned_cols=37  Identities=30%  Similarity=0.548  Sum_probs=34.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+||||||+||+++|.+|++ .|++|+|||+.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~-~G~~V~viE~~~~   40 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            357999999999999999999999 8999999999754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.7e-06  Score=71.31  Aligned_cols=33  Identities=24%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -++|||||..|+-+|..|++ .|.+|+|+|+++.
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~   55 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVING-LGAKTHLFEMFDA   55 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             EEEEECCChhhHHHHHHhhc-cccEEEEEeecch
Confidence            49999999999999999999 8999999999853

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.28  E-value=4.5e-06  Score=77.76  Aligned_cols=35  Identities=20%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .-.|+|||||++|+++|..|++ .|++|+||||.+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~-~G~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4569999999999999999999 8999999999753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.28  E-value=1.2e-06  Score=73.00  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..+++ .|.+|+|+|+++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~-~G~~Vtvi~~~~~   59 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGR-IGSEVTVVEFASE   59 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHH-HTCEEEEECSSSS
T ss_pred             eEEEEccchHHHHHHHHHHh-cCCeEEEEEEccc
Confidence            59999999999999999999 8999999999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.25  E-value=2.4e-07  Score=84.68  Aligned_cols=35  Identities=37%  Similarity=0.644  Sum_probs=32.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +||+||||||+||+++|..+++ .|.+|+|||++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar-~G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCEEEEEecCCC
Confidence            6999999999999999999999 8999999999853

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=8e-06  Score=67.69  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=30.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..|++ .|.+|+|+|+.+.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~-lG~~Vtii~~~~~   57 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQ   57 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEEEECCCchHHHHHHHHHh-hCcceeEEEeccc
Confidence            59999999999999999999 8999999999854

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.23  E-value=3.3e-07  Score=84.41  Aligned_cols=36  Identities=42%  Similarity=0.568  Sum_probs=32.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHYFN  106 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~~~  106 (511)
                      .||||||||++|+++|++|++ .|. +|+||||.+...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~-~G~~~V~vlE~~~~~G   37 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDHIG   37 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSSSB
T ss_pred             CCEEEECCcHHHHHHHHHHHh-CCCCcEEEEECCCCCC
Confidence            389999999999999999999 796 699999987653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3e-07  Score=84.11  Aligned_cols=34  Identities=29%  Similarity=0.628  Sum_probs=32.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+||||||++|+.+|.++++ .|++|+|||++.
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar-~G~kV~vIEk~~   36 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAE-LGARAAVVESHK   36 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCEEEEEeccC
Confidence            6999999999999999999999 899999999874

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.2e-07  Score=89.08  Aligned_cols=35  Identities=29%  Similarity=0.512  Sum_probs=32.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ||||||||++|+++|++|++ .|++|+||||.+...
T Consensus         1 DViVIGaG~aGL~aA~~L~~-~G~~V~VlE~~~~~G   35 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDRVG   35 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH-TTCCEEEEESSSSSB
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCCCc
Confidence            89999999999999999999 899999999987654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=4.2e-07  Score=80.61  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=31.1

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .|||||||||++|+.+|..+++ .|.+|+|||+.
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar-~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR-KGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-cCCeEEEEEEe
Confidence            3999999999999999999999 89999999974

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.17  E-value=1.5e-06  Score=71.46  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=30.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||+.|+-+|..|++ .|.+|+|+|+++.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~-~g~~Vtlve~~~~   55 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRK-LGAQVSVVEARER   55 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhh-cccceEEEeeecc
Confidence            59999999999999999999 8999999999853

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.16  E-value=7.9e-07  Score=82.54  Aligned_cols=37  Identities=16%  Similarity=0.220  Sum_probs=33.4

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ....+|||||||++|+++|++|++ .|.+|+||||...
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~-~G~~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILAR-KGYSVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            445689999999999999999999 8999999999753

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.14  E-value=5.4e-06  Score=68.70  Aligned_cols=35  Identities=23%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .-.++|||||..|+-+|..|++ .|.+|.|+|+++.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATART-AGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHhhc-ccceEEEEeeccc
Confidence            3579999999999999999999 8999999999853

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.11  E-value=9.1e-07  Score=83.38  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      .|||||||++|++||++|++ .|++|+||||++...
T Consensus         3 kV~IIGaG~aGL~aA~~La~-~G~~V~vlE~~~~~G   37 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKAG   37 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TSCEEEEECSSSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCCEEEEeCCCCCc
Confidence            49999999999999999999 899999999987654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.08  E-value=7.3e-07  Score=81.68  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=32.9

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .+||+||||||++|+.+|.++++ .|.+|+|+|++.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~-~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            47999999999999999999999 899999999974

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.1e-05  Score=67.17  Aligned_cols=33  Identities=30%  Similarity=0.183  Sum_probs=30.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..|++ .|.+|+|+|+++.
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~   56 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSA-LGSKTSLMIRHDK   56 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhc-CCcEEEEEeeccc
Confidence            59999999999999999999 8999999999853

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.05  E-value=7.9e-06  Score=68.08  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=30.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+=+|..+++ .|.+|.|+|+++.
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~-~G~~Vtive~~~~   60 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYST-LGSRLDVVEMMDG   60 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-HTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhc-CCCEEEEEEeecc
Confidence            59999999999999999999 8999999999853

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.02  E-value=1.2e-06  Score=85.33  Aligned_cols=40  Identities=35%  Similarity=0.454  Sum_probs=34.4

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhc----CCCCeEEEEcCCCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSE----IPHWKILLLEAGHYF  105 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe----~~G~~VLVLEaG~~~  105 (511)
                      ....|||||||||++|+++|..||+    ..|++|+||||.+..
T Consensus         4 ~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           4 SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            3456999999999999999999973    379999999998654

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.01  E-value=1.1e-06  Score=81.39  Aligned_cols=37  Identities=22%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHYF  105 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~~  105 (511)
                      ++||+||||||+||+++|.++|+ .| .+|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~-~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAAS-LHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-HHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH-cCCCEEEEEEEeccC
Confidence            57999999999999999999998 66 469999987643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.6e-05  Score=65.84  Aligned_cols=35  Identities=20%  Similarity=0.176  Sum_probs=29.4

Q ss_pred             ccEEEECCCcHHHHHHHHHhc---CCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSE---IPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe---~~G~~VLVLEaG~~  104 (511)
                      -.++|||||..|+-+|..|++   +.|.+|.++|+++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            369999999999999998864   25889999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.98  E-value=2.4e-05  Score=64.01  Aligned_cols=47  Identities=15%  Similarity=0.099  Sum_probs=34.0

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccC
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAG  326 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAG  326 (511)
                      ...++.|++|++++.|++|..+++ + +..|.+ .+|+  ++.++ .||+|+|
T Consensus        70 ~~l~~~GI~v~~~~~v~~i~~~~~-g-~~~v~~-~~g~--~i~~D-~Vi~a~G  116 (117)
T d1feca2          70 EQLRANGINVRTHENPAKVTKNAD-G-TRHVVF-ESGA--EADYD-VVMLAIG  116 (117)
T ss_dssp             HHHHHTTEEEEETCCEEEEEECTT-S-CEEEEE-TTSC--EEEES-EEEECSC
T ss_pred             HHHhhCcEEEEcCCEEEEEEECCC-C-EEEEEE-CCCC--EEEcC-EEEEecC
Confidence            344567999999999999987654 3 233443 3444  57898 6999998

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.97  E-value=1.3e-05  Score=66.35  Aligned_cols=33  Identities=30%  Similarity=0.491  Sum_probs=30.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -+++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAE-AGYHVKLIHRGA   65 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-TTCEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHhhc-ccceEEEEeccc
Confidence            469999999999999999999 899999999875

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.96  E-value=2.2e-05  Score=65.05  Aligned_cols=33  Identities=15%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -.++|||||..|+-+|..|++ .|.+|+|+|+.+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~-~g~~Vtlie~~~   63 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAK-AGKKVTVIDILD   63 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CEEEEECChHHHHHHHHHhhc-cceEEEEEEecC
Confidence            369999999999999999999 899999999975

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.94  E-value=2.9e-06  Score=79.81  Aligned_cols=40  Identities=23%  Similarity=0.311  Sum_probs=36.0

Q ss_pred             cccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           64 QDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        64 ~~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +..+++||+||||||++|+.+|..|++ .|.+|+|||+.+.
T Consensus        37 ~~~~k~yDvvVIGgG~aG~~aA~~~a~-~G~kv~vve~~~~   76 (261)
T d1mo9a1          37 ENDPREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWPF   76 (261)
T ss_dssp             TTCCSCBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCCccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCc
Confidence            345678999999999999999999999 8999999999764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.93  E-value=3.1e-06  Score=77.72  Aligned_cols=36  Identities=19%  Similarity=0.404  Sum_probs=31.5

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      +.||+||||+|+||+++|.++|+ .|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~-~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAAT-LYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHH-TSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH-cCCCEEEEEEeecc
Confidence            57999999999999999999998 564 7999998643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2e-06  Score=76.81  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +..||+|||||++|+.+|..|++ .|.+|+|||+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar-~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEEeecc
Confidence            46899999999999999999999 8999999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=5.9e-06  Score=73.29  Aligned_cols=38  Identities=24%  Similarity=0.409  Sum_probs=34.3

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      .....|+|||||+||+.+|..|++ .|++|+|+|+.+..
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~-~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI   78 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHh-hccceEEEeccCcc
Confidence            445789999999999999999999 89999999998754

>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), substrate-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.92  E-value=8.2e-06  Score=72.50  Aligned_cols=103  Identities=12%  Similarity=-0.034  Sum_probs=64.4

Q ss_pred             hhhhcccCceEEEEEcCCCCcchh--hhhcchHHHHHhHHhcCCCCcccCcccceee-eehhccchhhhhccCCCeEEEE
Q psy760          361 NLQEHLAMAGLTFLVNQPIGLLQD--RLIKEMPVHFAGKLRHSLSPITNSETLSTNI-KTIFAAHHDKINKSGEDITIRL  437 (511)
Q Consensus       361 nl~DH~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  437 (511)
                      ||||||.+ .+.|.+++..+....  ...+....++.+|+.+++|||+.......+. +...      .+...+++++.+
T Consensus         1 NLQDHp~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~Yl~~rtGpla~~~~~~~~~~~~~~------~d~~~p~~q~~~   73 (181)
T d1kdga2           1 NAQDNPSI-NLVFTHPSIDAYENWADVWSNPRPADAAQYLANQSGVFAGASPKLNFWRAYSG------SDGFTRYAQGTV   73 (181)
T ss_dssp             TBBCCCCE-EEEEECTTCCCGGGGTTTTTSCCHHHHHHHHHHSCSGGGSCSCCEEEEEEEEC------TTSCEEEEEEEE
T ss_pred             CCCCCCCe-eEEEEECCcccHHHHHhhccCccHHHHHHHHhcCCcccccchhhcccccccCC------cccCCccceeec
Confidence            89999998 899988654433211  1111356788999999999998764333332 1110      112234555555


Q ss_pred             ecC------------cceeEEEeccCC-CCCCCceEEEecCCCchhH
Q psy760          438 IKD------------LIGILIALALPR-KFSTWGKFQVSSSFVVPVW  471 (511)
Q Consensus       438 ~~~------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~  471 (511)
                      .+.            ..+..+...+.+ |+|| |+++|+|.++.|.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SR-G~V~L~Sp~~~P~I  119 (181)
T d1kdga2          74 RPGAASVNSSLPYNASQIFTITVYLSTGIQSR-GRIGIDAALRGTVL  119 (181)
T ss_dssp             EESCSCCCCSSCCCGGGEEEEEEEECTTCCCC-BEEEECTTCCEEEE
T ss_pred             CceeeccCCccCCCCCCceEEEEeeccCCCCC-CeEEeCCCCCCCcc
Confidence            421            124667776775 9999 99999887766654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.92  E-value=5.8e-05  Score=61.84  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=30.7

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..|++ .|.+|.|+|+++.
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~   56 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKR-LGIDSYIFARGNR   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSSS
T ss_pred             EEEEECCchHHHHHHHHHHh-ccccceeeehhcc
Confidence            49999999999999999999 8999999999853

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.90  E-value=3.4e-06  Score=79.12  Aligned_cols=34  Identities=38%  Similarity=0.537  Sum_probs=31.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      +||+|||||++||++|+.|++ .|. +|+|+||.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~-~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ-AGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh-CCCCeEEEEeCCCC
Confidence            699999999999999999999 795 9999999864

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.89  E-value=4.3e-06  Score=81.08  Aligned_cols=37  Identities=22%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY  107 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~  107 (511)
                      -.|+|||||++||++|++|++ .|++|+|+|+.+..+.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k-~G~~V~viEk~~~iGG   39 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHIGG   39 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSSSG
T ss_pred             CEEEEECCcHHHHHHHHHHHh-CCCCEEEEECCCCCcC
Confidence            458999999999999999999 7999999999987654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=7.4e-05  Score=61.64  Aligned_cols=31  Identities=16%  Similarity=0.147  Sum_probs=29.0

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .++|||||..|+-.|..|++ -|.+|+|+|+.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~-lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhh-cCCeEEEEEec
Confidence            59999999999999999999 89999999864

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=6.2e-06  Score=79.58  Aligned_cols=40  Identities=30%  Similarity=0.444  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhc-CCCCeEEEEcCCCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFN  106 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe-~~G~~VLVLEaG~~~~  106 (511)
                      ..++||+|||||++|+++|+.|++ ++|++|+|+|+++...
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~   88 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG   88 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCc
Confidence            347999999999999999999996 3799999999987643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.85  E-value=3.6e-06  Score=75.41  Aligned_cols=36  Identities=31%  Similarity=0.322  Sum_probs=33.1

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..+||+|||||++|+.+|..|++ .|++|+|+|+...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar-~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAAR-AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-cCCcEEEEEeecc
Confidence            36999999999999999999999 8999999998754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.81  E-value=8.1e-05  Score=60.83  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             cEEEECCCcHHHHHHHHHhc--CCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSE--IPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe--~~G~~VLVLEaG~~  104 (511)
                      .++|||||..|+-+|..|++  ..+.+|.|+|+++.
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            59999999999999965543  15778999999853

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.3e-05  Score=71.25  Aligned_cols=38  Identities=16%  Similarity=0.359  Sum_probs=31.9

Q ss_pred             CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      +.++++||||||.+|+.+|..|.+. ...+|+++++.+.
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            4679999999999999999999762 5568999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.74  E-value=1.5e-05  Score=73.52  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=35.6

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      .....-+|+|||||++|+++|..|++ .|++|+|+|+.+..
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~-~G~~v~l~E~~~~~   84 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLME-SGYTVHLTDTAEKI   84 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHH-hccceeeEeecccc
Confidence            33466899999999999999999999 89999999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.66  E-value=7.3e-05  Score=66.68  Aligned_cols=45  Identities=18%  Similarity=0.182  Sum_probs=34.8

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGA  327 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa  327 (511)
                      ++.|++++++++|++|..+++     +|.+.  .++++.++.++ .+|+|+|.
T Consensus        67 ~~~gi~v~~~~~V~~i~~~~~-----~v~~~~~~~g~~~~~~~D-~li~a~G~  113 (198)
T d1nhpa1          67 ESRGVNVFSNTEITAIQPKEH-----QVTVKDLVSGEERVENYD-KLIISPGA  113 (198)
T ss_dssp             HHTTCEEEETEEEEEEETTTT-----EEEEEETTTCCEEEEECS-EEEECCCE
T ss_pred             HHCCcEEEEeeceeeEeeccc-----cceeeecccccccccccc-eeeEeecc
Confidence            457999999999999976652     34444  35667788898 69999997

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.63  E-value=1.5e-05  Score=70.70  Aligned_cols=35  Identities=26%  Similarity=0.493  Sum_probs=31.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~~  105 (511)
                      --|+|||||++|+.+|..|++ .|++ |+|+||.+..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~-~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLAR-LGYSDITIFEKQEYV   40 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSSSC
T ss_pred             CEEEEECChHHHHHHHHHHHH-CCCCeEEEEEecCcc
Confidence            359999999999999999999 8985 9999998754

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.49  E-value=2.1e-05  Score=71.94  Aligned_cols=36  Identities=28%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCC-------CeEEEEcCCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPH-------WKILLLEAGHYFN  106 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G-------~~VLVLEaG~~~~  106 (511)
                      +.|+|||||+||++||++|++ .|       ++|+|+||.+...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~-~G~~~~~~~~~V~v~E~~~~~G   45 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLK-AADTTEDLDMAVDMLEMLPTPW   45 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-HHHHSTTCCEEEEEEESSSSCS
T ss_pred             cEEEEECcCHHHHHHHHHHHH-cCCccccCCCceEEEecCCCCC
Confidence            789999999999999999988 55       6899999987643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.46  E-value=3.4e-05  Score=70.49  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~  105 (511)
                      ..|+|||||+||++||.+|++. .|++|+|+|+.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            3699999999999999999763 58899999999754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.28  E-value=0.00059  Score=58.49  Aligned_cols=30  Identities=33%  Similarity=0.773  Sum_probs=27.3

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |+|||||.+|+-+|..|++  +.+|+|+|+.+
T Consensus         3 VvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~   32 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQ--TYEVTVIDKEP   32 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTT--TSEEEEECSSS
T ss_pred             EEEECCcHHHHHHHHHHHc--CCCEEEEeccc
Confidence            8999999999999999976  67999999875

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0044  Score=50.80  Aligned_cols=47  Identities=17%  Similarity=0.124  Sum_probs=38.9

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAG  326 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAG  326 (511)
                      +..|+++++++.|++|.-++  +++++|++.+  ++++.++.++ .|.++-|
T Consensus        77 ~~~~I~v~~~~~v~~i~G~~--~~v~~v~l~~~~tge~~~l~vd-gvFv~IG  125 (126)
T d1fl2a2          77 SLKNVDIILNAQTTEVKGDG--SKVVGLEYRDRVSGDIHNIELA-GIFVQIG  125 (126)
T ss_dssp             TCTTEEEESSEEEEEEEESS--SSEEEEEEEETTTCCEEEEECS-EEEECSC
T ss_pred             cccceeEEcCcceEEEEccc--cceeeEEEEECCCCCEEEEECC-EEEEEeC
Confidence            45689999999999998765  5799999885  4677789998 6998876

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.09  E-value=2.7e-05  Score=71.21  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=28.4

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      |+|||||++|+++|++|++ .|.+|+|+|+..
T Consensus         3 V~VIGaGi~GlstA~~L~~-~G~~v~v~e~~~   33 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHE-RYHSVLQPLDVK   33 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHH-HHTTTSSSCEEE
T ss_pred             EEEECchHHHHHHHHHHHH-CCCCceEEeeee
Confidence            8999999999999999999 899988888753

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00013  Score=66.81  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             ccEEEECCCcHHHHHHHHHhcC--CCCeEEEEcCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEI--PHWKILLLEAGH  103 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~--~G~~VLVLEaG~  103 (511)
                      .+|||||||+||+++|.++|+.  .+++|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            4799999999999999988762  567899999864

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.75  E-value=0.014  Score=47.90  Aligned_cols=48  Identities=13%  Similarity=-0.004  Sum_probs=37.8

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEc
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILS  324 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILA  324 (511)
                      .+.+|+++++++.|.+|.=++..+.+.++++.+  +++..++.++ .|.++
T Consensus        80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~d-GvFVa  129 (130)
T d1vdca2          80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVS-GLFFA  129 (130)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECS-EEEEC
T ss_pred             ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECC-EEEEE
Confidence            456789999999999998876445688898874  4667789998 68775

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0043  Score=52.75  Aligned_cols=45  Identities=18%  Similarity=0.195  Sum_probs=36.7

Q ss_pred             hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccC
Q psy760          274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAG  326 (511)
Q Consensus       274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAG  326 (511)
                      ...++.|+++++++.|.+|.  ++     |+.+..+|++..+.|| .||+|+|
T Consensus       116 ~~~~~~gv~~~~~~~v~~i~--~~-----gv~~~~~g~e~~i~aD-~Vv~A~G  160 (162)
T d1ps9a2         116 TTLLSRGVKMIPGVSYQKID--DD-----GLHVVINGETQVLAVD-NVVICAG  160 (162)
T ss_dssp             HHHHHTTCEEECSCEEEEEE--TT-----EEEEEETTEEEEECCS-EEEECCC
T ss_pred             HHHhhCCeEEEeeeEEEEEc--CC-----CCEEecCCeEEEEECC-EEEECCC
Confidence            34567899999999999984  32     6777777888889998 6999998

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.53  E-value=0.0008  Score=57.84  Aligned_cols=34  Identities=29%  Similarity=0.565  Sum_probs=29.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~  104 (511)
                      .|||||||.+|+.+|.+|.+. +..+|+|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            489999999999999999883 4469999998753

>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=96.43  E-value=2.5e-05  Score=68.44  Aligned_cols=106  Identities=9%  Similarity=0.029  Sum_probs=82.5

Q ss_pred             cCCCCcccCccccee---eeehhccchhhhhcc--CCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhHH
Q psy760          400 HSLSPITNSETLSTN---IKTIFAAHHDKINKS--GEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVWF  472 (511)
Q Consensus       400 ~~~Gpl~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~  472 (511)
                      ..+|.+..||.+.+|   +++|.+..+.+.+.+  ...+.|+|.++.+.+++...+.+.+..++++++.+.  -.+|.++
T Consensus        40 ~~~GellfTh~GiSGpavl~lS~~~~~~l~~~~~~~~~l~id~~P~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~lp~~l  119 (169)
T d2i0za2          40 SHKMDMLFTHFGLSGPAALRCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVLKGYVPERY  119 (169)
T ss_dssp             EEEEEEEECSSEEESHHHHHHHHHHHHHHHHHCCSCEEEEEESCTTSCHHHHHHHHHHHHTTSTTSBHHHHTTTSSCHHH
T ss_pred             eeeccEEEEcCCccchHHHHHhHHHHHHHHhcccCceEEEEecCCcccHHHHHHHHHHHHHhccchhHhhhcccccchHH
Confidence            467999999999998   888888877776554  457888899887666666666666666688888777  5699999


Q ss_pred             H---HHhhccccccccceeee--------eecceEEeccccccC
Q psy760          473 W---LVQNGCQMSGKWSNLYW--------YTDGFEVDLSGSFGL  505 (511)
Q Consensus       473 ~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~  505 (511)
                      |   +.++||..+.+|++|-.        .--.|++.++|..|.
T Consensus       120 ~~~ll~~~~i~~~~~~~~ls~~~~~~L~~~Lk~~~l~v~g~~~~  163 (169)
T d2i0za2         120 FLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEFTVNVNGTQSI  163 (169)
T ss_dssp             HHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHEEEEECEECCG
T ss_pred             HHHHHHHcCCcccCCHHHCCHHHHHHHHHHHhCCEeeccCCCCC
Confidence            9   89999999999999765        235677777776654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.25  E-value=0.019  Score=48.50  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=27.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH  103 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~  103 (511)
                      .|||||||-.|+=+|..|.+ .|. +|.+++|.+
T Consensus        47 kVvVIGGGdtA~D~A~~a~r-~GA~~V~vi~rr~   79 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALR-CGARRVFLVFRKG   79 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-TTCSEEEEECSSC
T ss_pred             EEEEECCChhHHHHHHHHHH-cCCcceeEEEeCC
Confidence            59999999999999999988 554 688887753

>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=96.23  E-value=0.00082  Score=59.87  Aligned_cols=109  Identities=9%  Similarity=0.013  Sum_probs=64.3

Q ss_pred             hhhhcccCceEEEEEcCCCCcchh--------hhhcchHHHHHhHHhcCCCCcccCccccee-eee-----hhccchhhh
Q psy760          361 NLQEHLAMAGLTFLVNQPIGLLQD--------RLIKEMPVHFAGKLRHSLSPITNSETLSTN-IKT-----IFAAHHDKI  426 (511)
Q Consensus       361 nl~DH~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~-----~~~~~~~~~  426 (511)
                      |||||+.+ .+.++++...+....        ...........+|+..+.|+++.......+ ++.     .+..+++++
T Consensus         1 NLQDH~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~q~~~~   79 (196)
T d1cf3a2           1 NLQDQTTA-TVRSRITSAGAGQGQAAWFATFNETFGDYSEKAHELLNTKLEQWAEEAVARGGFHNTTALLIQYENYRDWI   79 (196)
T ss_dssp             CBBCCEEE-EEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred             CccCcccc-eEEEEeccCccCcchhhhHHHHHHHHHHHHHHHHHHHhhcCcchhhchhhccccccChhhhhccccccccc
Confidence            89999998 899999865332110        010013445667877787877643221122 221     222333445


Q ss_pred             hccCCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--C-CchhH
Q psy760          427 NKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--F-VVPVW  471 (511)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~p~~  471 (511)
                      ..........+.....+..+...+.+|+|| |+++|+|+  + +.|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~Sr-G~V~l~S~dP~~d~P~I  126 (196)
T d1cf3a2          80 VNHNVAYSELFLDTAGVASFDVWDLLPFTR-GYVHILDKDPYLHHFAY  126 (196)
T ss_dssp             HTTCCEEEEEEEECTTEEEEEEEESSCCCC-BEEEESSSCGGGCCEEE
T ss_pred             cccCccccccccCCCCceeeeeeecCCCcc-eEEEeeCCCcccCCCcc
Confidence            554433333333323457788888999999 99999998  6 57775

>d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Multi-domain proteins (alpha and beta)
fold: HI0933 insert domain-like
superfamily: HI0933 insert domain-like
family: HI0933 insert domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=6.1e-05  Score=64.40  Aligned_cols=95  Identities=11%  Similarity=0.049  Sum_probs=65.9

Q ss_pred             CCCCcccCccccee---eeehhccchhhhhccCCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhHHH--
Q psy760          401 SLSPITNSETLSTN---IKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVWFW--  473 (511)
Q Consensus       401 ~~Gpl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~--  473 (511)
                      .+|++..||++.+|   +++|.+.      +.+..++|+|.++.+   +.+.|.+.+.++|++++.+.  ..+|.|||  
T Consensus        34 ~~G~lLfTh~GlSGPavL~lS~~~------~~~~~~~i~l~p~~~---~~~~l~~~~~~~~kk~i~~~L~~~lPkrl~~~  104 (148)
T d2gqfa2          34 FYNQLLFTHRGISGPAVLQISNYW------QPTESVEIDLLPNHN---VEEEINQAKQSSPKQMLKTILVRLLPKKLVEL  104 (148)
T ss_dssp             EEEEEEECSSEEESHHHHHHTTTC------CTTCCEEEESCSSSC---HHHHHHHHHHHCTTSBHHHHHTTTSCHHHHHH
T ss_pred             eecceEEEcCCccchHHHHHHHHh------ccCceEEEecCChhh---HHHHHHHHHHhhhhhhHHHHHHHHhHHHHHHH
Confidence            36999999999999   7777542      335779999988743   33445555556788888777  55999999  


Q ss_pred             -HHhhccccccccceeeee--------ecceEEeccccccC
Q psy760          474 -LVQNGCQMSGKWSNLYWY--------TDGFEVDLSGSFGL  505 (511)
Q Consensus       474 -~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~  505 (511)
                       +.+.++ .+.+|++|---        --.|++-.+|..|.
T Consensus       105 ll~~~~~-~~~~~~~lsk~~~~~L~~~Lk~~~~~v~Gt~Gf  144 (148)
T d2gqfa2         105 WIEQGIV-QDEVIANISKVRVKNLVDFIHHWEFTPNGTEGY  144 (148)
T ss_dssp             HHHTTSS-CCCBGGGCCHHHHHHHHHHHHCEEECCSEECCT
T ss_pred             HHHHcCc-ccchHHHCCHHHHHHHHHHHhCCEEeecCCCCh
Confidence             555555 58999987531        12455555555553

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.038  Score=44.81  Aligned_cols=48  Identities=10%  Similarity=0.098  Sum_probs=36.9

Q ss_pred             hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC--C-eEEEEEeCcEEEEccC
Q psy760          276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--G-IDHKILARKEVILSAG  326 (511)
Q Consensus       276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~--g-~~~~v~A~k~VILAAG  326 (511)
                      .+..++.+++++.|.+|.-++  .++++|++.+.  + +..++.++ .|+++-|
T Consensus        76 ~~~~~i~~~~~~~v~~i~G~~--~~v~~v~l~~~~~~e~~~~l~~d-gvFv~iG  126 (126)
T d1trba2          76 VENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVA-GLFVAIG  126 (126)
T ss_dssp             HHTSSEEEECSCEEEEEEECS--SSEEEEEEECCTTCCCCEEEECS-EEEECSC
T ss_pred             hcccceeEecceEEEEEECCC--CceEEEEEEECCCCceEEEEECC-EEEEEeC
Confidence            456789999999999998765  56999999852  2 23578887 6998876

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.20  E-value=0.002  Score=64.93  Aligned_cols=41  Identities=22%  Similarity=0.495  Sum_probs=37.9

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN  106 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~  106 (511)
                      ..+.+|||||+|.|..=+.+|..||+ .|.|||-||+....+
T Consensus         2 ~lP~e~DVII~GTGL~ESILAaAlSr-~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           2 NLPSDFDVIVIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCCccCEEEECCChHHHHHHHHHHh-cCCEEEEecCCCcCC
Confidence            46789999999999999999999999 899999999988765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.18  E-value=0.0021  Score=55.51  Aligned_cols=35  Identities=29%  Similarity=0.396  Sum_probs=30.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF  105 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~  105 (511)
                      =||||||||.+|+-+|..|++ .|.+|.|+|+.+..
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~-~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRA-SGWEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHH-cCCceEEEEecCcc
Confidence            379999999999999999999 78888888877643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.45  E-value=0.0053  Score=52.57  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=30.4

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|+|||+|..|..+|.+|++ .|++|+|++|...
T Consensus         4 ~IliiGaG~~G~~~a~~L~~-~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTD-SGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHT-TTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCEEEEEECChH
Confidence            48999999999999999999 7999999999754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.22  E-value=0.0061  Score=52.61  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|.|||+|..|+.+|..|++ .|++|.++++.+.
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~   35 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQ   35 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCEEEEEECCHH
Confidence            37899999999999999999 8999999999753

>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GMC oxidoreductases
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=95.19  E-value=0.0035  Score=55.63  Aligned_cols=106  Identities=9%  Similarity=0.027  Sum_probs=61.2

Q ss_pred             hhhhcccCceEEEEEcCCCCcchh--------hhhcchHHHHHhHHhcCCCCcccCccccee-eee-----hhccchhhh
Q psy760          361 NLQEHLAMAGLTFLVNQPIGLLQD--------RLIKEMPVHFAGKLRHSLSPITNSETLSTN-IKT-----IFAAHHDKI  426 (511)
Q Consensus       361 nl~DH~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~-----~~~~~~~~~  426 (511)
                      |||||+.. .+.++++...+....        ....-......+|+..+.|+++.......+ ++.     .+..++.++
T Consensus         1 NLQDH~~~-~i~~r~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~q~~~~   79 (196)
T d1gpea2           1 NMQDQTTT-TVSSRASSAGAGQGQAVFFANFTETFGDYAPQARDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWL   79 (196)
T ss_dssp             SBBCCEEE-EEEEEECGGGCSBCEEEEEEEHHHHHGGGHHHHHHHHHHSHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCc-eEEEEecCCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCccccchhccccccccchhhhhhHHHHhhc
Confidence            89999998 899998764332111        000012456677777777776553322222 222     112222333


Q ss_pred             hccCCC-eEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCch
Q psy760          427 NKSGED-ITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVP  469 (511)
Q Consensus       427 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p  469 (511)
                      .....+ .++.+.. ..+..+...+.+|+|| |+++|+|.  ++-|
T Consensus        80 ~~~~~~~~~~~~~~-~~~~~~~~~~l~P~Sr-G~V~l~S~dP~~~p  123 (196)
T d1gpea2          80 LDEDVAFAELFMDT-EGKINFDLWDLIPFTR-GSVHILSSDPYLWQ  123 (196)
T ss_dssp             HHSCCEEEEEEEEC-TTEEEEEEEESSCCCC-BEEEESSSCGGGTC
T ss_pred             cccccchhhhccCC-CCceEEeeeccCCccc-eEEEeeCCCchhcc
Confidence            344333 3333333 3568888889999999 99999998  6544

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.12  E-value=0.0043  Score=53.74  Aligned_cols=34  Identities=18%  Similarity=0.342  Sum_probs=28.9

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ..|+|||||.+|+-+|..|.+ .|.+|.|++.++.
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~-~g~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQ-AGYQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHH-HTCCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHh-cCCceEEEEEecc
Confidence            349999999999999999998 7888777777654

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.11  E-value=0.0092  Score=50.55  Aligned_cols=32  Identities=13%  Similarity=0.053  Sum_probs=30.2

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.|||+|..|+..|..|++ .|++|.++.|.+.
T Consensus         3 I~IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~   34 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHH-CCCceEEEEcCHH
Confidence            7999999999999999999 8999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.00  E-value=0.018  Score=47.01  Aligned_cols=32  Identities=38%  Similarity=0.528  Sum_probs=29.8

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |||+|+|..|..+|..|.+ .|+.|+++|+.+.
T Consensus         3 IvI~G~G~~G~~la~~L~~-~g~~v~vid~d~~   34 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCCcceecCChh
Confidence            8999999999999999998 7999999998753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.021  Score=43.71  Aligned_cols=33  Identities=12%  Similarity=0.212  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|+|+|.|.+|.++|..|++ .|.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~-~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLA-RGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHH-CCCEEEEeeCCcC
Confidence            48999999999999999999 7999999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.55  E-value=0.032  Score=46.73  Aligned_cols=33  Identities=12%  Similarity=0.193  Sum_probs=29.1

Q ss_pred             cEEEE--CCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIV--GAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVV--GgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+|||  |||..|+-+|..|++ .|.+|+|+|+.+.
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~-~G~~Vtlv~~~~~   75 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLAT-AGHEVTIVSGVHL   75 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHH-TTCEEEEEESSCT
T ss_pred             ceEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCc
Confidence            45555  999999999999999 8999999999864

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.25  E-value=0.025  Score=46.06  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|||||.|-.|..+|..|.+ .|++|+++|+.+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~-~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR-MGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEecCcHH
Confidence            48999999999999999999 8999999998754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.035  Score=48.63  Aligned_cols=33  Identities=15%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|.|||+|..|...|..++. .|++|.++|+.+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            48999999999999999999 8999999998753

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.18  E-value=0.041  Score=47.80  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      |.|||+|..|...|..++. .|++|.++|+.+.
T Consensus         7 vaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~   38 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSAS-KGTPILMKDINEH   38 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHH-TTCCEEEECSSHH
T ss_pred             EEEECcCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence            8999999999999999999 8999999998643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.84  E-value=0.059  Score=47.35  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=28.9

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +.|||.|..|+++|..||+ .|++|..+|...
T Consensus         3 I~ViGlG~vGl~~a~~la~-~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSA-RGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHh-CCCcEEEEeCCH
Confidence            7899999999999999999 899999999764

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.40  E-value=0.073  Score=46.32  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=30.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      -..+.|||+|.-|.+.|..|++ .|++|.+..+.+
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~-~g~~V~l~~r~~   40 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSK-KCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-TEEEEEEECSCH
T ss_pred             eceEEEECCCHHHHHHHHHHHH-cCCeEEEEEecH
Confidence            3469999999999999999999 799999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.33  E-value=1.1  Score=39.32  Aligned_cols=49  Identities=16%  Similarity=0.190  Sum_probs=36.7

Q ss_pred             hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--------------CCeEEEEEeCcEEEEccC
Q psy760          277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--------------KGIDHKILARKEVILSAG  326 (511)
Q Consensus       277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--------------~g~~~~v~A~k~VILAAG  326 (511)
                      ...++.+.......+|.-++++++++++++.+              .|+..++.|+ -||+|.|
T Consensus       162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipad-lVi~AiG  224 (225)
T d1cjca1         162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG-LVLSSIG  224 (225)
T ss_dssp             CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS-EEEECCC
T ss_pred             cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECC-EEEECCC
Confidence            45578888888888988876556888887653              2455678887 6888887

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.16  E-value=0.14  Score=44.05  Aligned_cols=35  Identities=9%  Similarity=0.112  Sum_probs=31.3

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      ...|+|||+|.+|+.+|..+.. -|.+|.++|....
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~-lGA~V~v~D~~~~   63 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKR-LGAVVMATDVRAA   63 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCST
T ss_pred             CcEEEEEcCcHHHHHHHHHHHH-cCCEEEEEeccHH
Confidence            4689999999999999988888 8999999998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.98  E-value=0.12  Score=43.75  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=31.3

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +...|+|||+|.+|+.+|..+.. -|.+|.++|...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~-lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG-LGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhh-CCCEEEEEeCcH
Confidence            34789999999999999999888 899999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.74  E-value=0.091  Score=43.62  Aligned_cols=31  Identities=23%  Similarity=0.389  Sum_probs=28.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEc
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE  100 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLE  100 (511)
                      .--++|||||..|+.-|..|.+ .|.+|+|+-
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~-~GA~VtVva   43 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMP-TGCKLTLVS   43 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGG-GTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            4569999999999999999999 899999994

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.73  E-value=0.12  Score=43.80  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             EEEE-CCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           72 FIIV-GAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        72 vIVV-GgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      +.|| |+|..|..+|.+|++ .|++|+|..|.+.
T Consensus         3 i~vigGaG~iG~alA~~la~-~G~~V~l~~R~~e   35 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLAT-LGHEIVVGSRREE   35 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHT-TTCEEEEEESSHH
T ss_pred             EEEEeCCcHHHHHHHHHHHH-CCCEEEEEECCHH
Confidence            6788 679999999999999 8999999998753

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.46  E-value=0.11  Score=44.59  Aligned_cols=31  Identities=19%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .|.|||+|.-|.+.|..|++ .|.+|.+..|.
T Consensus         2 kI~ViGaG~~GtalA~~la~-~g~~V~l~~r~   32 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVD-NGNEVRIWGTE   32 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHH-HCCEEEEECCG
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCEEEEEEec
Confidence            47899999999999999999 79999999764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.58  E-value=0.18  Score=39.51  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      .--++|||+|..|..-|..|.+ .|.+|+|+...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~-~ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLE-AGARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-TTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            4569999999999999999999 89999998643

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.39  E-value=0.19  Score=42.04  Aligned_cols=31  Identities=19%  Similarity=0.248  Sum_probs=28.8

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +.|||.|..|.+.|..|++ .|++|.+.++.+
T Consensus         3 I~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHH-CCCEEEEEECCc
Confidence            7899999999999999999 899999999874

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.18  E-value=0.15  Score=39.72  Aligned_cols=34  Identities=9%  Similarity=0.108  Sum_probs=27.3

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG  102 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG  102 (511)
                      ..-+|+|||+|.+|.=+|..|++ -..+|+++-+-
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~-~ak~v~~~~~r   64 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTP-VAKHPIYQSLL   64 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTT-TSCSSEEEECT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHH-hcCEEEEEEec
Confidence            34689999999999999999998 56666655543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.04  E-value=0.26  Score=40.63  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=29.9

Q ss_pred             cEEEEC-CCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVG-AGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVG-gG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      -|.||| .|..|...|.+|.+ .|++|.+.++...
T Consensus        11 kI~iIGg~G~mG~~la~~L~~-~G~~V~~~d~~~~   44 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRA-SGYPISILDREDW   44 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHT-TTCCEEEECTTCG
T ss_pred             eEEEEcCCCHHHHHHHHHHHH-cCCCcEecccccc
Confidence            599999 69999999999999 8999999998653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=85.12  E-value=0.35  Score=39.87  Aligned_cols=37  Identities=14%  Similarity=0.274  Sum_probs=30.8

Q ss_pred             cCCcccEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCC
Q psy760           66 LLLEYDFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGH  103 (511)
Q Consensus        66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~  103 (511)
                      |++.--+.|||+|..|.++|+.|+. .+  ..|.++|+..
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~-~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQ-QGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHH-HTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHh-cCCCcEEEEeeccc
Confidence            3455679999999999999999998 45  4799999764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=85.06  E-value=0.37  Score=40.63  Aligned_cols=34  Identities=15%  Similarity=0.176  Sum_probs=30.6

Q ss_pred             cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      .-.|+|+|+|.++-++++.|++ .|.+|.|+-|..
T Consensus        18 ~k~vlIlGaGGaarai~~al~~-~g~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLS-LDCAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcc-cceEEEeccchH
Confidence            4579999999999999999999 788999998865

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.95  E-value=5.2  Score=34.42  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=18.5

Q ss_pred             ccEEEECCCcHHHHHHHHHhc
Q psy760           70 YDFIIVGAGPGGCTVANRLSE   90 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe   90 (511)
                      -.|||||+|-.++=+|..|++
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~   60 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLT   60 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHS
T ss_pred             ceEEEECCCchhHhhhhhhcc
Confidence            479999999999999988773

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.61  E-value=0.39  Score=41.31  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=26.3

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +.|||.|..|+++|..+|+  |++|+.+|-.+
T Consensus         3 I~ViGlG~vGl~~a~~~a~--g~~V~g~Din~   32 (196)
T d1dlja2           3 IAVAGSGYVGLSLGVLLSL--QNEVTIVDILP   32 (196)
T ss_dssp             EEEECCSHHHHHHHHHHTT--TSEEEEECSCH
T ss_pred             EEEECCChhHHHHHHHHHC--CCcEEEEECCH
Confidence            7899999999999987764  89999999764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=84.09  E-value=0.41  Score=39.38  Aligned_cols=31  Identities=13%  Similarity=0.154  Sum_probs=29.1

Q ss_pred             EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760           72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH  103 (511)
Q Consensus        72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~  103 (511)
                      +||+|.|..|..+|..|.+ .|.+|+|+|..+
T Consensus         6 iII~G~g~~g~~l~~~L~~-~~~~v~vId~d~   36 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQ-RGQNVTVISNLP   36 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHH-cCCCEEEEeccc
Confidence            8999999999999999999 799999999865

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.42  E-value=0.41  Score=40.05  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=27.8

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .|+|+|+|..|+.++.-+.. .|.+|+++|+.+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~-~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKA-YGAFVVCTARSPR   61 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             EEEEEcccccchhhHhhHhh-hcccccccchHHH
Confidence            48999999999998766655 8999999998754

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=83.06  E-value=0.64  Score=38.55  Aligned_cols=39  Identities=13%  Similarity=0.103  Sum_probs=31.9

Q ss_pred             ccCCcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      -+.+..-+.|||+|..|.++|..|+. .+. +++++|..+.
T Consensus         3 ~~~k~~KI~IIGaG~VG~~lA~~l~~-~~~~el~L~D~~~~   42 (154)
T d1pzga1           3 LVQRRKKVAMIGSGMIGGTMGYLCAL-RELADVVLYDVVKG   42 (154)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSSS
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHh-CCCceEEEEEeccc
Confidence            34567889999999999999999988 454 7999987653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=81.20  E-value=1.1  Score=37.43  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             CcccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCC
Q psy760           68 LEYDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGH  103 (511)
Q Consensus        68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~  103 (511)
                      ...-|.|||+|..|.++|+.|+. .|.  .+.++|...
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~-~~l~~ElvLiD~~~   55 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILG-KSLADELALVDVLE   55 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHH-TTCCSEEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-cCCCcEEEEEEecc
Confidence            35689999999999999999998 565  799999754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.62  E-value=0.59  Score=39.11  Aligned_cols=33  Identities=15%  Similarity=0.227  Sum_probs=27.6

Q ss_pred             cEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760           71 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY  104 (511)
Q Consensus        71 DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~  104 (511)
                      .|+|+|+|+.|+.++.-+.. .|. +|.++|+.+.
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~-~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDLSAT   62 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCSEEEEEESCHH
T ss_pred             EEEEECCCccHHHHHHHHHH-cCCceEEeccCCHH
Confidence            48999999999998877766 677 7999998754

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=80.35  E-value=0.79  Score=38.62  Aligned_cols=34  Identities=9%  Similarity=0.156  Sum_probs=31.2

Q ss_pred             ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760           70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY  104 (511)
Q Consensus        70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~  104 (511)
                      .+|-|||-|..|...|.+|.+ .|++|.+.+|.+.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~-~G~~V~v~dr~~~   36 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMND-HGFVVCAFNRTVS   36 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSTH
T ss_pred             CcEEEEeEhHHHHHHHHHHHH-CCCeEEEEcCCHH
Confidence            578999999999999999999 8999999998764